Query 001311
Match_columns 1102
No_of_seqs 857 out of 4634
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 4.8E-67 1.6E-71 635.1 74.0 566 340-1064 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 2E-65 7E-70 621.1 66.5 577 345-1066 17-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 9.7E-63 3.3E-67 597.3 68.4 565 292-1011 6-577 (577)
4 1nr0_A Actin interacting prote 100.0 8.5E-62 2.9E-66 589.4 67.2 575 312-1013 22-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-61 1.5E-65 636.6 64.2 600 341-1066 610-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.9E-58 6.4E-63 564.7 61.3 559 344-1067 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 9.7E-57 3.3E-61 595.0 63.0 568 403-1070 610-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-55 4.4E-60 553.5 68.1 621 339-1056 10-818 (902)
9 1pgu_A Actin interacting prote 100.0 1.8E-55 6.3E-60 538.2 62.9 547 312-1015 22-615 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-54 6.1E-59 543.1 55.6 581 404-1069 13-785 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 8.1E-46 2.8E-50 468.5 60.2 467 341-1011 8-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 7E-44 2.4E-48 450.8 52.7 467 403-1064 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 8.9E-40 3E-44 375.4 41.0 307 341-768 103-409 (410)
14 1got_B GT-beta; complex (GTP-b 100.0 8.7E-39 3E-43 357.6 43.1 290 341-767 50-340 (340)
15 2pbi_B Guanine nucleotide-bind 100.0 1.1E-38 3.8E-43 358.3 41.8 293 341-767 59-354 (354)
16 1vyh_C Platelet-activating fac 100.0 3.8E-39 1.3E-43 370.1 38.6 306 448-919 103-409 (410)
17 3ow8_A WD repeat-containing pr 100.0 2.3E-38 7.8E-43 350.2 42.6 288 403-877 27-319 (321)
18 3ow8_A WD repeat-containing pr 100.0 1.6E-38 5.4E-43 351.5 40.7 287 448-920 27-320 (321)
19 1r5m_A SIR4-interacting protei 100.0 1.8E-38 6.2E-43 368.1 42.5 341 404-921 41-425 (425)
20 1got_B GT-beta; complex (GTP-b 100.0 1.1E-37 3.6E-42 348.8 41.5 287 445-918 47-340 (340)
21 4g56_B MGC81050 protein; prote 100.0 7.9E-39 2.7E-43 359.7 32.3 324 348-880 7-344 (357)
22 3frx_A Guanine nucleotide-bind 100.0 1.5E-37 5.1E-42 343.9 40.9 301 342-770 13-317 (319)
23 2ynn_A Coatomer subunit beta'; 100.0 2.3E-37 7.8E-42 340.0 41.8 254 342-643 9-264 (304)
24 4g56_B MGC81050 protein; prote 100.0 1.5E-38 5.2E-43 357.4 31.7 318 705-1069 19-345 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-37 7.3E-42 346.9 40.4 208 403-637 10-225 (345)
26 3frx_A Guanine nucleotide-bind 100.0 8.5E-37 2.9E-41 337.9 44.7 214 403-638 12-228 (319)
27 2ynn_A Coatomer subunit beta'; 100.0 3.6E-37 1.2E-41 338.4 40.7 289 447-921 7-302 (304)
28 3iz6_a 40S ribosomal protein R 100.0 5.4E-38 1.8E-42 356.9 35.1 298 403-881 61-377 (380)
29 3iz6_a 40S ribosomal protein R 100.0 6.6E-38 2.3E-42 356.2 35.4 300 340-769 60-374 (380)
30 2pm9_A Protein WEB1, protein t 100.0 6.7E-39 2.3E-43 370.7 27.7 331 409-921 13-414 (416)
31 1r5m_A SIR4-interacting protei 100.0 4E-37 1.4E-41 356.7 41.9 358 341-878 40-424 (425)
32 4gqb_B Methylosome protein 50; 100.0 7.7E-38 2.6E-42 348.4 34.2 295 738-1069 29-333 (344)
33 4gqb_B Methylosome protein 50; 100.0 9.4E-38 3.2E-42 347.6 34.8 293 404-881 26-333 (344)
34 2pbi_B Guanine nucleotide-bind 100.0 1.2E-36 4.3E-41 341.6 42.1 289 403-876 59-354 (354)
35 2xzm_R RACK1; ribosome, transl 100.0 1.9E-36 6.7E-41 339.1 41.7 216 403-637 16-244 (343)
36 3vl1_A 26S proteasome regulato 100.0 4E-37 1.4E-41 356.3 36.9 264 347-639 57-324 (420)
37 1gxr_A ESG1, transducin-like e 100.0 2.9E-36 9.8E-41 337.5 40.5 324 345-878 8-336 (337)
38 4ery_A WD repeat-containing pr 100.0 1.1E-35 3.9E-40 328.5 43.7 289 342-768 19-310 (312)
39 2pm9_A Protein WEB1, protein t 100.0 4.2E-38 1.5E-42 363.9 24.3 373 343-880 9-415 (416)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.9E-36 1.3E-40 336.6 37.3 298 737-1069 13-337 (345)
41 4ery_A WD repeat-containing pr 100.0 2.7E-35 9.4E-40 325.4 42.3 291 446-920 16-311 (312)
42 1k32_A Tricorn protease; prote 100.0 1.2E-34 3.9E-39 373.6 54.6 526 345-1069 13-639 (1045)
43 2j04_B YDR362CP, TAU91; beta p 100.0 8.1E-37 2.8E-41 357.1 28.8 356 337-921 124-517 (524)
44 1erj_A Transcriptional repress 100.0 3.2E-35 1.1E-39 335.8 40.9 274 339-638 57-342 (393)
45 1gxr_A ESG1, transducin-like e 100.0 1E-35 3.4E-40 333.0 36.1 320 407-919 8-335 (337)
46 3vl1_A 26S proteasome regulato 100.0 1.6E-35 5.5E-40 342.7 37.6 346 409-921 57-419 (420)
47 2hes_X YDR267CP; beta-propelle 100.0 4.4E-35 1.5E-39 325.8 39.0 252 341-638 9-281 (330)
48 3v7d_B Cell division control p 100.0 9.6E-35 3.3E-39 340.9 43.4 341 403-918 116-460 (464)
49 4aow_A Guanine nucleotide-bind 100.0 1.9E-34 6.5E-39 323.2 43.7 211 403-638 33-247 (340)
50 1erj_A Transcriptional repress 100.0 8.5E-35 2.9E-39 332.2 41.5 304 450-921 61-389 (393)
51 2xzm_R RACK1; ribosome, transl 100.0 5.9E-35 2E-39 327.0 39.4 291 445-922 13-341 (343)
52 3gre_A Serine/threonine-protei 100.0 5.5E-36 1.9E-40 348.5 31.5 373 353-918 34-437 (437)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-34 6.6E-39 336.1 44.5 317 403-921 113-442 (445)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6E-34 2E-38 331.9 45.6 320 341-879 113-442 (445)
55 1k32_A Tricorn protease; prote 100.0 1.1E-33 3.9E-38 364.4 52.6 493 337-1016 43-639 (1045)
56 2hes_X YDR267CP; beta-propelle 100.0 1E-34 3.5E-39 322.9 36.8 292 736-1067 11-328 (330)
57 2j04_B YDR362CP, TAU91; beta p 100.0 4E-36 1.4E-40 351.2 25.7 355 407-1014 132-517 (524)
58 4aow_A Guanine nucleotide-bind 100.0 4E-34 1.4E-38 320.5 40.7 303 342-770 34-337 (340)
59 3gre_A Serine/threonine-protei 100.0 7.3E-36 2.5E-40 347.5 26.2 386 415-1011 34-437 (437)
60 3v7d_B Cell division control p 100.0 1.7E-33 5.9E-38 330.3 46.1 320 340-877 115-461 (464)
61 3zwl_B Eukaryotic translation 100.0 1.1E-33 3.9E-38 320.8 39.7 302 403-923 27-348 (369)
62 3dm0_A Maltose-binding peripla 100.0 1E-33 3.4E-38 349.3 40.6 260 342-646 378-640 (694)
63 4a11_B DNA excision repair pro 100.0 1E-33 3.5E-38 326.2 37.1 356 368-921 22-405 (408)
64 3k26_A Polycomb protein EED; W 100.0 8.7E-35 3E-39 329.6 27.4 317 403-920 13-365 (366)
65 3dm0_A Maltose-binding peripla 100.0 4.2E-33 1.4E-37 343.8 41.7 211 403-638 377-593 (694)
66 1sq9_A Antiviral protein SKI8; 100.0 4.9E-33 1.7E-37 319.2 37.3 301 445-922 8-396 (397)
67 3ei3_B DNA damage-binding prot 100.0 5.5E-33 1.9E-37 316.9 36.5 302 403-879 68-382 (383)
68 3zwl_B Eukaryotic translation 100.0 3.1E-32 1.1E-36 308.9 42.0 306 337-771 23-347 (369)
69 4e54_B DNA damage-binding prot 100.0 1.5E-33 5.1E-38 326.9 31.4 241 342-625 115-363 (435)
70 4e54_B DNA damage-binding prot 100.0 7.9E-34 2.7E-38 329.2 28.3 310 404-882 115-433 (435)
71 4a11_B DNA excision repair pro 100.0 3.8E-33 1.3E-37 321.3 33.7 362 582-1067 21-405 (408)
72 2pm7_B Protein transport prote 100.0 8.7E-33 3E-37 302.3 33.9 255 342-637 5-285 (297)
73 3ei3_B DNA damage-binding prot 100.0 6.6E-33 2.3E-37 316.2 33.7 308 588-1014 57-382 (383)
74 3i2n_A WD repeat-containing pr 100.0 1.2E-32 4.3E-37 310.7 35.3 299 448-922 13-354 (357)
75 3i2n_A WD repeat-containing pr 100.0 1.9E-32 6.4E-37 309.2 36.5 322 403-882 13-356 (357)
76 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-32 7.5E-37 310.7 36.7 326 404-881 4-363 (372)
77 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-32 8.1E-37 310.4 36.9 244 345-637 7-274 (372)
78 3k26_A Polycomb protein EED; W 100.0 1.1E-32 3.8E-37 312.3 34.0 265 343-638 15-319 (366)
79 3odt_A Protein DOA1; ubiquitin 100.0 9.6E-32 3.3E-36 297.2 38.7 244 340-638 12-256 (313)
80 3dwl_C Actin-related protein 2 100.0 1.3E-33 4.6E-38 321.3 24.3 257 345-636 10-280 (377)
81 1sq9_A Antiviral protein SKI8; 100.0 2.4E-32 8.3E-37 313.4 33.9 256 342-646 12-330 (397)
82 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-31 6.3E-36 294.9 39.4 287 403-886 13-303 (313)
83 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-33 4.6E-38 318.2 21.8 327 451-1002 13-349 (588)
84 4h5i_A Guanine nucleotide-exch 100.0 1.1E-32 3.8E-37 310.5 29.3 291 453-922 14-344 (365)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-33 3.9E-38 318.7 21.0 318 345-867 14-349 (588)
86 4aez_A CDC20, WD repeat-contai 100.0 2E-31 6.8E-36 305.6 39.3 289 342-770 87-380 (401)
87 4h5i_A Guanine nucleotide-exch 100.0 3.7E-32 1.3E-36 306.1 32.0 203 805-1015 132-344 (365)
88 4gga_A P55CDC, cell division c 100.0 4.9E-31 1.7E-35 304.3 42.1 239 348-638 107-354 (420)
89 3dwl_C Actin-related protein 2 100.0 1E-32 3.5E-37 314.0 26.4 341 404-877 7-377 (377)
90 4gga_A P55CDC, cell division c 100.0 4.8E-31 1.6E-35 304.4 40.5 299 409-899 106-415 (420)
91 4aez_A CDC20, WD repeat-contai 100.0 4.9E-31 1.7E-35 302.4 37.6 292 404-886 87-387 (401)
92 4ggc_A P55CDC, cell division c 100.0 8.9E-31 3E-35 290.2 38.4 283 410-921 27-315 (318)
93 2pm7_B Protein transport prote 100.0 6.2E-31 2.1E-35 287.6 34.4 248 804-1067 7-285 (297)
94 3dw8_B Serine/threonine-protei 100.0 7.2E-31 2.5E-35 306.4 36.7 273 343-639 25-375 (447)
95 3bg1_A Protein SEC13 homolog; 100.0 2.3E-31 8E-36 293.7 29.1 226 403-638 8-248 (316)
96 3bg1_A Protein SEC13 homolog; 100.0 6.8E-32 2.3E-36 298.0 24.0 255 343-637 10-293 (316)
97 3f3f_A Nucleoporin SEH1; struc 100.0 1.8E-30 6.2E-35 291.7 35.6 226 403-638 6-250 (351)
98 1yfq_A Cell cycle arrest prote 100.0 3.7E-30 1.3E-34 288.5 35.9 294 403-876 6-321 (342)
99 3mmy_A MRNA export factor; mRN 100.0 3.6E-30 1.2E-34 291.7 35.1 301 403-878 34-345 (368)
100 1p22_A F-BOX/WD-repeat protein 100.0 8.7E-30 3E-34 295.5 37.2 233 344-638 131-366 (435)
101 3mmy_A MRNA export factor; mRN 100.0 5E-30 1.7E-34 290.6 33.9 250 342-638 35-305 (368)
102 1yfq_A Cell cycle arrest prote 100.0 2.5E-30 8.6E-35 289.8 30.6 245 344-638 9-283 (342)
103 4ggc_A P55CDC, cell division c 100.0 3.1E-29 1.1E-33 277.7 38.4 283 741-1069 27-317 (318)
104 1p22_A F-BOX/WD-repeat protein 100.0 8.3E-30 2.8E-34 295.6 35.3 276 449-924 129-417 (435)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 3.3E-30 1.1E-34 295.8 30.9 254 347-639 35-301 (402)
106 3jrp_A Fusion protein of prote 100.0 1.4E-29 4.8E-34 288.2 34.1 253 342-638 7-288 (379)
107 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-29 5.1E-34 284.2 32.8 260 342-638 7-338 (351)
108 3dw8_B Serine/threonine-protei 100.0 1.3E-28 4.5E-33 287.2 38.3 335 562-969 28-445 (447)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-29 1.3E-33 287.0 31.1 288 743-1069 38-344 (402)
110 3jrp_A Fusion protein of prote 100.0 1.2E-28 4.2E-33 280.4 31.0 250 805-1069 10-289 (379)
111 2w18_A PALB2, fancn, partner a 100.0 8.3E-28 2.8E-32 254.3 34.6 230 738-1065 110-355 (356)
112 3bws_A Protein LP49; two-domai 100.0 2E-27 6.7E-32 276.0 41.1 356 345-921 26-432 (433)
113 1l0q_A Surface layer protein; 100.0 3.4E-27 1.2E-31 269.8 41.6 227 359-638 2-234 (391)
114 2xyi_A Probable histone-bindin 100.0 1.4E-28 4.7E-33 284.5 30.3 267 339-638 121-411 (430)
115 3jro_A Fusion protein of prote 100.0 8E-29 2.7E-33 306.8 29.2 253 342-638 5-286 (753)
116 2w18_A PALB2, fancn, partner a 100.0 2.8E-27 9.5E-32 250.3 35.6 294 455-919 41-355 (356)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-27 5.7E-32 277.5 35.9 262 347-635 5-337 (450)
118 1l0q_A Surface layer protein; 100.0 9.2E-27 3.1E-31 266.2 40.4 329 421-957 3-364 (391)
119 4gq1_A NUP37; propeller, trans 100.0 1.6E-28 5.4E-33 279.9 25.5 267 344-635 87-387 (393)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-27 1E-31 275.3 35.4 248 804-1073 100-397 (450)
121 3vu4_A KMHSV2; beta-propeller 100.0 3.1E-27 1.1E-31 265.1 33.9 297 404-837 15-337 (355)
122 3bws_A Protein LP49; two-domai 100.0 4.8E-27 1.6E-31 272.7 36.2 296 409-879 123-432 (433)
123 4gq1_A NUP37; propeller, trans 100.0 6.4E-28 2.2E-32 274.9 25.7 291 404-878 85-388 (393)
124 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-27 2.2E-31 262.5 33.1 252 343-638 16-272 (355)
125 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-27 8.8E-32 265.0 29.1 280 460-921 43-333 (343)
126 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-27 6.6E-32 266.0 27.5 198 805-1015 124-334 (343)
127 3jro_A Fusion protein of prote 100.0 2.3E-27 7.9E-32 293.7 29.4 251 804-1069 7-287 (753)
128 2xyi_A Probable histone-bindin 100.0 2.4E-26 8.3E-31 265.6 34.7 205 409-638 46-310 (430)
129 1nir_A Nitrite reductase; hemo 100.0 2.4E-25 8.1E-30 262.7 39.8 333 354-889 145-524 (543)
130 1nir_A Nitrite reductase; hemo 100.0 1.6E-25 5.3E-30 264.2 38.1 333 415-924 144-517 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 5E-23 1.7E-27 256.5 37.1 258 346-636 36-366 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.1E-23 3.6E-28 241.3 27.7 303 452-902 61-409 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-23 5.5E-28 239.8 28.6 242 346-638 62-345 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-23 4.2E-28 261.3 28.0 235 347-638 17-290 (723)
135 2ecf_A Dipeptidyl peptidase IV 99.9 8.3E-23 2.8E-27 254.5 33.7 343 408-922 36-460 (741)
136 2z3z_A Dipeptidyl aminopeptida 99.9 9.3E-22 3.2E-26 243.5 32.8 249 348-636 27-341 (706)
137 1xfd_A DIP, dipeptidyl aminope 99.9 5.5E-22 1.9E-26 246.5 29.2 379 409-975 17-448 (723)
138 1ri6_A Putative isomerase YBHE 99.9 3E-21 1E-25 215.8 30.8 299 704-1046 7-333 (343)
139 2z3z_A Dipeptidyl aminopeptida 99.9 3.6E-21 1.2E-25 238.2 34.1 336 410-923 27-437 (706)
140 3u4y_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 206.1 35.4 239 352-638 3-253 (331)
141 1ri6_A Putative isomerase YBHE 99.9 2.3E-20 7.8E-25 208.7 32.6 245 805-1069 36-310 (343)
142 3u4y_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 205.9 32.5 285 745-1069 3-306 (331)
143 1pby_B Quinohemoprotein amine 99.9 3.8E-20 1.3E-24 206.2 32.1 181 826-1022 114-318 (337)
144 3vgz_A Uncharacterized protein 99.9 9.4E-20 3.2E-24 204.6 35.0 273 739-1058 40-335 (353)
145 3vgz_A Uncharacterized protein 99.9 1.2E-19 4.1E-24 203.8 35.1 250 343-638 37-304 (353)
146 1pby_B Quinohemoprotein amine 99.9 1.7E-20 5.7E-25 209.2 26.7 271 752-1074 2-317 (337)
147 3hfq_A Uncharacterized protein 99.9 1.6E-19 5.4E-24 202.2 32.2 246 805-1067 38-317 (347)
148 2ojh_A Uncharacterized protein 99.8 1.2E-19 4E-24 197.9 25.2 233 805-1058 40-293 (297)
149 2ojh_A Uncharacterized protein 99.8 2.7E-19 9.2E-24 195.1 25.8 243 336-628 31-293 (297)
150 2oit_A Nucleoporin 214KDA; NH2 99.8 3.2E-18 1.1E-22 196.2 34.8 315 739-1067 36-405 (434)
151 1z68_A Fibroblast activation p 99.8 5.6E-19 1.9E-23 218.9 30.3 285 742-1069 62-445 (719)
152 3hfq_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 195.0 30.0 279 710-1019 14-324 (347)
153 1z68_A Fibroblast activation p 99.8 4.1E-19 1.4E-23 220.1 28.7 335 567-1022 20-451 (719)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.6E-23 197.1 31.5 266 346-636 36-332 (434)
155 4a5s_A Dipeptidyl peptidase 4 99.8 4.8E-18 1.6E-22 210.3 36.0 233 347-638 17-295 (740)
156 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-18 6.1E-23 193.8 27.9 241 811-1074 4-332 (349)
157 1jmx_B Amine dehydrogenase; ox 99.8 6.5E-18 2.2E-22 189.2 31.3 288 569-1022 6-333 (349)
158 3o4h_A Acylamino-acid-releasin 99.8 2.1E-18 7.3E-23 207.7 28.6 233 346-635 21-274 (582)
159 3o4h_A Acylamino-acid-releasin 99.8 1.5E-18 5E-23 209.2 26.0 271 452-921 20-315 (582)
160 3scy_A Hypothetical bacterial 99.8 5.7E-17 2E-21 182.4 37.1 166 847-1019 154-344 (361)
161 4a5s_A Dipeptidyl peptidase 4 99.8 5.5E-17 1.9E-21 200.8 40.1 342 565-1022 19-457 (740)
162 3scy_A Hypothetical bacterial 99.8 5.6E-17 1.9E-21 182.5 34.3 245 805-1069 48-339 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-17 5.1E-22 187.2 28.8 251 806-1068 39-342 (365)
164 2oiz_A Aromatic amine dehydrog 99.8 4.7E-16 1.6E-20 173.8 34.0 219 808-1046 109-358 (361)
165 3pe7_A Oligogalacturonate lyas 99.8 2.2E-16 7.5E-21 179.7 29.0 250 340-638 24-330 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.4E-16 8.1E-21 177.3 28.2 250 741-1016 41-343 (365)
167 3pe7_A Oligogalacturonate lyas 99.7 5.7E-16 2E-20 176.2 30.4 207 404-638 26-274 (388)
168 2oiz_A Aromatic amine dehydrog 99.7 2.5E-15 8.5E-20 167.9 33.6 229 357-626 14-273 (361)
169 3fvz_A Peptidyl-glycine alpha- 99.7 5.2E-15 1.8E-19 163.5 27.7 251 806-1068 23-323 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.7 1.3E-14 4.6E-19 160.1 30.0 250 346-637 23-322 (329)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.5E-13 5.2E-18 160.9 40.2 332 575-1022 168-546 (567)
172 1q7f_A NHL, brain tumor CG1071 99.7 2.2E-14 7.6E-19 155.2 30.6 243 805-1068 28-281 (286)
173 3c5m_A Oligogalacturonate lyas 99.7 3E-15 1E-19 170.7 24.7 294 410-878 37-381 (396)
174 1qks_A Cytochrome CD1 nitrite 99.7 3.2E-13 1.1E-17 158.2 41.2 338 462-978 162-546 (567)
175 3azo_A Aminopeptidase; POP fam 99.7 1.3E-14 4.6E-19 177.7 29.6 245 341-635 18-321 (662)
176 3c5m_A Oligogalacturonate lyas 99.7 3.8E-15 1.3E-19 169.8 23.0 239 348-638 37-330 (396)
177 4a2l_A BT_4663, two-component 99.7 2.8E-10 9.4E-15 141.9 68.3 554 346-1068 87-660 (795)
178 1q7f_A NHL, brain tumor CG1071 99.7 1.3E-13 4.4E-18 149.1 32.9 248 344-637 27-280 (286)
179 3azo_A Aminopeptidase; POP fam 99.7 1.6E-14 5.4E-19 177.0 28.9 334 449-919 19-409 (662)
180 4a2l_A BT_4663, two-component 99.6 1.9E-10 6.6E-15 143.3 64.0 545 346-1069 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 2.4E-13 8.2E-18 151.7 29.4 220 808-1066 60-330 (347)
182 3e5z_A Putative gluconolactona 99.6 7.7E-13 2.6E-17 143.7 32.0 245 342-638 23-287 (296)
183 2gop_A Trilobed protease; beta 99.6 3.6E-13 1.2E-17 150.3 28.1 222 347-638 15-292 (347)
184 2dg1_A DRP35, lactonase; beta 99.6 6.2E-13 2.1E-17 147.4 28.9 274 740-1058 6-301 (333)
185 3sjl_D Methylamine dehydrogena 99.6 2.9E-12 9.9E-17 140.0 32.1 204 809-1022 139-371 (386)
186 3dsm_A Uncharacterized protein 99.6 8.9E-13 3.1E-17 145.2 28.4 241 807-1072 44-306 (328)
187 3no2_A Uncharacterized protein 99.6 7.2E-13 2.5E-17 141.2 26.4 253 817-1085 4-270 (276)
188 2xdw_A Prolyl endopeptidase; a 99.6 4.8E-13 1.6E-17 164.7 28.6 249 345-639 123-416 (710)
189 2z2n_A Virginiamycin B lyase; 99.5 1.5E-11 5.2E-16 133.7 36.5 281 738-1069 13-297 (299)
190 2mad_H Methylamine dehydrogena 99.5 2.4E-11 8.4E-16 135.3 38.4 204 809-1021 127-357 (373)
191 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.1E-17 142.2 28.7 273 710-1022 15-309 (328)
192 2xdw_A Prolyl endopeptidase; a 99.5 3.7E-12 1.2E-16 156.8 33.3 245 738-1016 123-416 (710)
193 2dg1_A DRP35, lactonase; beta 99.5 2.2E-12 7.4E-17 142.9 28.3 195 409-637 6-213 (333)
194 2bkl_A Prolyl endopeptidase; m 99.5 4E-13 1.4E-17 164.8 24.3 240 805-1069 119-399 (695)
195 3v9f_A Two-component system se 99.5 1.3E-08 4.3E-13 126.6 64.9 559 347-1067 66-656 (781)
196 3v9f_A Two-component system se 99.5 2.1E-08 7E-13 124.7 66.6 574 346-1069 18-613 (781)
197 3e5z_A Putative gluconolactona 99.5 3.3E-12 1.1E-16 138.8 28.3 234 805-1068 26-287 (296)
198 2z2n_A Virginiamycin B lyase; 99.5 4.7E-11 1.6E-15 129.7 36.0 237 740-1016 57-297 (299)
199 2bkl_A Prolyl endopeptidase; m 99.5 6E-13 2.1E-17 163.2 22.7 248 345-639 119-399 (695)
200 1rwi_B Serine/threonine-protei 99.5 3.8E-12 1.3E-16 136.2 25.7 239 808-1069 25-266 (270)
201 1rwi_B Serine/threonine-protei 99.5 5.9E-12 2E-16 134.7 27.0 239 348-638 25-265 (270)
202 3sjl_D Methylamine dehydrogena 99.5 7.2E-12 2.4E-16 136.9 27.4 280 745-1070 38-366 (386)
203 3c75_H MADH, methylamine dehyd 99.5 3.2E-11 1.1E-15 134.5 31.4 206 809-1021 179-409 (426)
204 2mad_H Methylamine dehydrogena 99.5 1E-10 3.6E-15 130.2 35.2 237 811-1069 70-352 (373)
205 3no2_A Uncharacterized protein 99.5 1.4E-11 4.8E-16 131.2 26.2 234 361-647 7-261 (276)
206 1yr2_A Prolyl oligopeptidase; 99.4 2.9E-11 1E-15 149.3 27.5 242 807-1069 163-443 (741)
207 2qc5_A Streptogramin B lactona 99.4 5.6E-10 1.9E-14 121.2 34.3 278 738-1066 18-299 (300)
208 1yr2_A Prolyl oligopeptidase; 99.4 3.5E-11 1.2E-15 148.6 26.3 282 699-1017 115-444 (741)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.1E-10 1E-14 124.3 30.0 257 343-637 14-299 (314)
210 2qc5_A Streptogramin B lactona 99.4 2.5E-09 8.6E-14 116.0 37.0 240 345-635 18-258 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.8E-10 6.1E-15 126.2 26.8 245 740-1014 18-299 (314)
212 3dr2_A Exported gluconolactona 99.3 3.6E-10 1.2E-14 123.0 27.0 237 342-631 40-301 (305)
213 3hrp_A Uncharacterized protein 99.3 7.3E-10 2.5E-14 125.3 29.3 250 807-1065 131-408 (409)
214 3c75_H MADH, methylamine dehyd 99.3 7.4E-10 2.5E-14 123.5 27.7 257 356-645 82-409 (426)
215 3hrp_A Uncharacterized protein 99.3 1.7E-09 5.7E-14 122.4 30.6 255 347-635 131-408 (409)
216 2qe8_A Uncharacterized protein 99.3 1.1E-10 3.8E-15 129.3 20.5 274 740-1064 17-318 (343)
217 1mda_H Methylamine dehydrogena 99.3 2.4E-10 8.3E-15 125.4 22.3 198 810-1022 127-354 (368)
218 3g4e_A Regucalcin; six bladed 99.3 1.3E-09 4.4E-14 118.0 26.9 229 741-1003 14-261 (297)
219 3g4e_A Regucalcin; six bladed 99.3 2.2E-09 7.4E-14 116.2 28.5 236 346-627 12-262 (297)
220 1kb0_A Quinohemoprotein alcoho 99.2 4.3E-09 1.5E-13 127.0 32.1 203 851-1067 246-567 (677)
221 1xip_A Nucleoporin NUP159; bet 99.2 1.9E-10 6.5E-15 126.4 18.3 173 807-1000 38-230 (388)
222 3iuj_A Prolyl endopeptidase; h 99.2 6.6E-10 2.3E-14 135.7 24.0 245 345-638 127-406 (693)
223 4a0p_A LRP6, LRP-6, low-densit 99.2 3.2E-05 1.1E-09 91.7 66.1 526 360-1069 8-551 (628)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 1.1E-08 3.7E-13 112.3 30.3 232 348-628 50-293 (326)
225 1kb0_A Quinohemoprotein alcoho 99.2 8E-09 2.7E-13 124.7 30.8 79 827-907 457-536 (677)
226 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.6E-14 121.4 21.4 251 347-629 17-313 (343)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.9E-08 9.8E-13 111.6 33.5 158 419-602 52-216 (376)
228 2ghs_A AGR_C_1268P; regucalcin 99.2 1.1E-08 3.7E-13 112.3 29.1 225 742-1004 51-292 (326)
229 3s94_A LRP-6, low-density lipo 99.2 2.4E-05 8.2E-10 92.7 59.7 503 408-1069 39-553 (619)
230 1yiq_A Quinohemoprotein alcoho 99.2 6.5E-09 2.2E-13 125.7 28.9 191 851-1055 238-537 (689)
231 3iuj_A Prolyl endopeptidase; h 99.2 4.8E-09 1.6E-13 128.1 27.9 242 738-1018 127-409 (693)
232 1xip_A Nucleoporin NUP159; bet 99.1 6.7E-10 2.3E-14 122.0 18.0 177 410-625 39-232 (388)
233 1yiq_A Quinohemoprotein alcoho 99.1 1E-08 3.5E-13 123.9 30.1 78 827-906 455-533 (689)
234 3dr2_A Exported gluconolactona 99.1 6.2E-09 2.1E-13 113.1 25.0 228 740-1008 45-301 (305)
235 1fwx_A Nitrous oxide reductase 99.1 2.2E-08 7.4E-13 113.8 27.0 244 812-1073 90-437 (595)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.4E-08 2.5E-12 108.3 31.8 233 362-638 56-297 (376)
237 2ece_A 462AA long hypothetical 99.1 5.6E-08 1.9E-12 106.5 28.6 230 816-1055 93-399 (462)
238 1mda_H Methylamine dehydrogena 99.1 8.1E-09 2.8E-13 113.3 22.0 252 359-646 32-354 (368)
239 3hxj_A Pyrrolo-quinoline quino 99.1 7.8E-09 2.7E-13 113.9 22.2 180 414-638 25-204 (330)
240 2ece_A 462AA long hypothetical 99.1 3E-08 1E-12 108.6 25.5 193 808-1002 139-399 (462)
241 4a0p_A LRP6, LRP-6, low-densit 99.1 8.6E-05 3E-09 88.0 57.6 505 345-1021 35-556 (628)
242 3s94_A LRP-6, low-density lipo 99.1 3.7E-05 1.3E-09 91.1 54.3 198 807-1016 349-553 (619)
243 3hxj_A Pyrrolo-quinoline quino 99.0 3.1E-08 1.1E-12 109.1 21.3 218 351-634 24-241 (330)
244 2hz6_A Endoplasmic reticulum t 98.9 6.4E-10 2.2E-14 124.2 4.7 189 859-1075 8-200 (369)
245 1fwx_A Nitrous oxide reductase 98.9 8.2E-08 2.8E-12 109.1 21.4 237 748-1018 98-435 (595)
246 2hz6_A Endoplasmic reticulum t 98.9 6E-10 2.1E-14 124.3 4.1 186 817-1022 8-200 (369)
247 2iwa_A Glutamine cyclotransfer 98.8 3.4E-07 1.2E-11 94.5 21.5 216 838-1069 10-239 (266)
248 1kv9_A Type II quinohemoprotei 98.8 1.5E-06 5.1E-11 104.7 30.3 168 851-1022 233-496 (668)
249 3ei3_A DNA damage-binding prot 98.8 0.0012 4E-08 83.7 56.7 224 820-1067 708-999 (1158)
250 1w6s_A Methanol dehydrogenase 98.8 4.7E-06 1.6E-10 97.8 32.0 167 852-1022 245-511 (599)
251 2iwa_A Glutamine cyclotransfer 98.7 1.8E-06 6E-11 89.2 24.2 200 808-1015 22-238 (266)
252 1npe_A Nidogen, entactin; glyc 98.7 7.7E-06 2.6E-10 86.5 29.8 202 808-1022 37-246 (267)
253 3nok_A Glutaminyl cyclase; bet 98.7 4E-07 1.4E-11 92.3 18.1 201 838-1055 44-254 (268)
254 3nol_A Glutamine cyclotransfer 98.7 6.8E-07 2.3E-11 90.7 19.5 202 838-1055 32-244 (262)
255 1kv9_A Type II quinohemoprotei 98.7 3.9E-06 1.3E-10 101.1 29.1 81 827-909 438-520 (668)
256 2ad6_A Methanol dehydrogenase 98.7 1E-05 3.4E-10 95.3 31.3 167 852-1022 239-502 (571)
257 3ott_A Two-component system se 98.7 0.0031 1E-07 77.6 63.1 534 346-1067 62-626 (758)
258 2ad6_A Methanol dehydrogenase 98.6 2.3E-05 7.7E-10 92.3 32.3 82 869-958 443-524 (571)
259 3nol_A Glutamine cyclotransfer 98.6 2.5E-06 8.7E-11 86.6 20.1 184 809-1003 45-244 (262)
260 1npe_A Nidogen, entactin; glyc 98.6 1.9E-05 6.5E-10 83.4 28.0 228 819-1069 2-240 (267)
261 1flg_A Protein (quinoprotein e 98.6 5.1E-05 1.8E-09 89.3 34.2 167 852-1022 250-524 (582)
262 2fp8_A Strictosidine synthase; 98.6 2.3E-05 7.8E-10 85.5 29.0 238 808-1069 20-315 (322)
263 3ei3_A DNA damage-binding prot 98.6 0.0071 2.4E-07 76.6 63.9 175 827-1014 807-999 (1158)
264 3nok_A Glutaminyl cyclase; bet 98.5 3.9E-06 1.3E-10 85.1 19.5 184 807-1002 55-253 (268)
265 3mbr_X Glutamine cyclotransfer 98.5 1.5E-05 5.2E-10 80.2 23.1 203 838-1056 10-224 (243)
266 2p4o_A Hypothetical protein; p 98.5 0.00015 5E-09 78.3 32.6 245 335-628 20-279 (306)
267 1w6s_A Methanol dehydrogenase 98.5 3.7E-05 1.3E-09 90.3 29.4 250 812-1077 111-513 (599)
268 1flg_A Protein (quinoprotein e 98.5 2.9E-05 1E-09 91.4 27.2 79 826-906 465-544 (582)
269 3mbr_X Glutamine cyclotransfer 98.4 4.1E-05 1.4E-09 77.1 22.9 187 806-1002 20-222 (243)
270 2xe4_A Oligopeptidase B; hydro 98.4 2.6E-05 8.9E-10 95.6 25.7 159 348-530 175-354 (751)
271 2p4o_A Hypothetical protein; p 98.4 0.00013 4.6E-09 78.6 28.3 228 740-1005 32-279 (306)
272 2fp8_A Strictosidine synthase; 98.4 0.00012 4.1E-09 79.7 27.4 255 347-637 19-313 (322)
273 2xe4_A Oligopeptidase B; hydro 98.4 3E-05 1E-09 95.1 24.5 195 808-1012 175-398 (751)
274 2xbg_A YCF48-like protein; pho 98.3 0.0011 3.6E-08 72.1 32.8 236 806-1065 79-320 (327)
275 3tc9_A Hypothetical hydrolase; 98.3 0.00025 8.5E-09 80.2 28.5 247 808-1066 138-429 (430)
276 3qqz_A Putative uncharacterize 98.3 0.00028 9.6E-09 72.3 26.0 217 842-1064 21-250 (255)
277 3qqz_A Putative uncharacterize 98.3 0.00055 1.9E-08 70.1 27.3 212 345-592 25-252 (255)
278 4hw6_A Hypothetical protein, I 98.2 0.00029 9.9E-09 79.6 27.7 248 808-1066 140-432 (433)
279 1ijq_A LDL receptor, low-densi 98.2 0.00091 3.1E-08 72.2 30.4 208 806-1022 29-246 (316)
280 3v64_C Agrin; beta propeller, 98.2 0.0015 5.1E-08 71.6 32.0 205 807-1022 73-283 (349)
281 3v64_C Agrin; beta propeller, 98.2 0.00074 2.5E-08 74.0 29.5 237 809-1069 36-277 (349)
282 1k3i_A Galactose oxidase precu 98.2 0.00015 5E-09 87.6 24.6 237 808-1056 244-530 (656)
283 3v65_B Low-density lipoprotein 98.2 0.001 3.6E-08 74.0 29.5 205 807-1022 116-326 (386)
284 2xbg_A YCF48-like protein; pho 98.1 0.0043 1.5E-07 67.2 32.9 193 807-1011 122-319 (327)
285 3p5b_L Low density lipoprotein 98.1 0.0022 7.4E-08 71.7 30.8 208 806-1022 111-328 (400)
286 1ijq_A LDL receptor, low-densi 98.1 0.0042 1.4E-07 66.9 31.8 224 369-638 10-239 (316)
287 3v65_B Low-density lipoprotein 98.1 0.0018 6.3E-08 72.0 29.4 216 340-601 109-326 (386)
288 1k3i_A Galactose oxidase precu 98.1 0.00025 8.5E-09 85.6 23.6 243 811-1069 190-499 (656)
289 3amr_A 3-phytase; beta-propell 98.0 0.0019 6.3E-08 68.6 25.7 196 817-1022 39-272 (355)
290 3kya_A Putative phosphatase; s 98.0 0.0024 8.2E-08 72.0 28.2 253 808-1069 140-477 (496)
291 3tc9_A Hypothetical hydrolase; 98.0 0.0022 7.7E-08 72.3 28.2 253 347-635 137-428 (430)
292 4hw6_A Hypothetical protein, I 98.0 0.0031 1.1E-07 71.1 28.7 253 347-635 139-431 (433)
293 3ott_A Two-component system se 97.9 0.095 3.3E-06 64.2 57.4 496 347-1012 103-624 (758)
294 3p5b_L Low density lipoprotein 97.9 0.0086 2.9E-07 66.8 30.4 226 369-638 92-321 (400)
295 3kya_A Putative phosphatase; s 97.9 0.0035 1.2E-07 70.6 26.6 254 741-1019 140-480 (496)
296 3sov_A LRP-6, low-density lipo 97.8 0.005 1.7E-07 66.2 26.5 204 808-1022 36-246 (318)
297 1n7d_A LDL receptor, low-densi 97.8 0.00016 5.5E-09 87.2 16.2 207 807-1022 406-622 (699)
298 3m0c_C LDL receptor, low-densi 97.8 0.0074 2.5E-07 73.1 30.2 208 806-1022 423-640 (791)
299 3sov_A LRP-6, low-density lipo 97.7 0.013 4.3E-07 63.0 26.9 210 346-601 34-246 (318)
300 3m0c_C LDL receptor, low-densi 97.6 0.024 8.3E-07 68.6 30.2 206 408-638 423-633 (791)
301 3amr_A 3-phytase; beta-propell 97.6 0.012 3.9E-07 62.6 23.4 190 860-1066 40-262 (355)
302 2p9w_A MAL S 1 allergenic prot 97.5 0.018 6.2E-07 60.5 23.5 204 807-1014 13-265 (334)
303 3a9g_A Putative uncharacterize 97.5 0.047 1.6E-06 59.5 27.7 230 807-1055 29-330 (354)
304 2xzh_A Clathrin heavy chain 1; 97.4 0.16 5.5E-06 52.7 31.5 248 351-638 71-333 (365)
305 1n7d_A LDL receptor, low-densi 97.4 0.00087 3E-08 80.7 13.1 222 340-601 399-622 (699)
306 2ism_A Putative oxidoreductase 97.3 0.032 1.1E-06 60.9 24.4 229 808-1055 32-333 (352)
307 2xzh_A Clathrin heavy chain 1; 97.3 0.2 6.8E-06 52.0 32.3 235 809-1069 69-334 (365)
308 1bpo_A Protein (clathrin); cla 97.3 0.26 9E-06 53.2 30.1 248 351-638 70-332 (494)
309 2g8s_A Glucose/sorbosone dehyd 97.2 0.092 3.2E-06 57.2 26.3 239 808-1065 19-350 (353)
310 2ism_A Putative oxidoreductase 97.2 0.18 6.2E-06 54.8 28.2 109 345-473 29-152 (352)
311 2p9w_A MAL S 1 allergenic prot 97.2 0.095 3.2E-06 55.1 24.1 163 348-530 14-215 (334)
312 2vpj_A Kelch-like protein 12; 97.1 0.067 2.3E-06 56.9 23.8 217 827-1069 31-280 (301)
313 3ii7_A Kelch-like protein 7; p 97.1 0.082 2.8E-06 56.4 24.4 224 820-1069 14-274 (306)
314 3a9g_A Putative uncharacterize 97.1 0.47 1.6E-05 51.5 31.3 108 346-473 28-152 (354)
315 1bpo_A Protein (clathrin); cla 97.1 0.5 1.7E-05 51.1 32.7 235 809-1069 68-333 (494)
316 2xn4_A Kelch-like protein 2; s 97.0 0.11 3.9E-06 55.1 24.4 229 818-1074 16-281 (302)
317 2vpj_A Kelch-like protein 12; 96.9 0.11 3.9E-06 55.0 23.2 188 816-1018 61-282 (301)
318 4asc_A Kelch repeat and BTB do 96.8 0.31 1.1E-05 52.1 25.7 224 826-1075 12-283 (315)
319 1zgk_A Kelch-like ECH-associat 96.8 0.2 6.9E-06 53.3 23.9 228 816-1069 23-289 (308)
320 3pbp_A Nucleoporin NUP82; beta 96.8 0.08 2.7E-06 57.2 19.9 109 811-921 25-158 (452)
321 1cru_A Protein (soluble quinop 96.7 0.39 1.3E-05 54.1 25.8 103 808-910 28-163 (454)
322 3ii7_A Kelch-like protein 7; p 96.6 0.22 7.4E-06 53.0 22.3 188 816-1018 54-276 (306)
323 3das_A Putative oxidoreductase 96.4 1.4 4.9E-05 47.0 28.7 99 809-909 204-326 (347)
324 2uvk_A YJHT; unknown function, 96.3 0.47 1.6E-05 51.7 23.5 232 817-1069 19-344 (357)
325 2g8s_A Glucose/sorbosone dehyd 96.3 0.99 3.4E-05 48.9 25.3 112 347-473 18-148 (353)
326 2nxp_A Transcription initiatio 96.3 0.0037 1.3E-07 58.1 4.9 78 60-137 52-136 (156)
327 2j4b_A TAF5, transcription ini 96.2 0.0012 4.1E-08 59.7 1.4 77 60-137 33-116 (138)
328 3pbp_A Nucleoporin NUP82; beta 96.1 0.06 2E-06 58.2 13.8 125 347-481 66-207 (452)
329 2xn4_A Kelch-like protein 2; s 96.1 0.54 1.9E-05 49.7 22.0 187 817-1018 61-280 (302)
330 3sre_A PON1, serum paraoxonase 96.0 0.42 1.4E-05 51.4 20.4 188 409-626 50-286 (355)
331 2uvk_A YJHT; unknown function, 96.0 0.73 2.5E-05 50.1 23.0 59 962-1022 286-350 (357)
332 2be1_A Serine/threonine-protei 95.9 0.019 6.6E-07 61.2 9.2 199 861-1072 11-236 (339)
333 4asc_A Kelch repeat and BTB do 95.9 0.71 2.4E-05 49.1 22.0 192 813-1019 41-282 (315)
334 2woz_A Kelch repeat and BTB do 95.9 1.5 5E-05 46.7 24.5 222 827-1074 24-292 (318)
335 1xi4_A Clathrin heavy chain; a 95.8 0.41 1.4E-05 59.9 21.1 236 810-1069 69-333 (1630)
336 1zgk_A Kelch-like ECH-associat 95.8 0.82 2.8E-05 48.5 21.5 187 817-1018 70-291 (308)
337 3sbq_A Nitrous-oxide reductase 95.7 2.2 7.6E-05 47.7 24.1 195 816-1015 140-409 (638)
338 1tl2_A L10, protein (tachylect 95.5 0.1 3.5E-06 50.9 11.3 146 808-964 42-204 (236)
339 2j49_A Transcription initiatio 95.4 0.0037 1.3E-07 57.1 1.1 63 60-123 35-97 (148)
340 2woz_A Kelch repeat and BTB do 95.4 1.2 4E-05 47.5 21.3 192 814-1020 53-293 (318)
341 1tl2_A L10, protein (tachylect 95.2 0.17 5.9E-06 49.3 12.0 147 849-1007 42-203 (236)
342 3das_A Putative oxidoreductase 95.2 4.1 0.00014 43.4 28.1 113 346-474 31-158 (347)
343 2be1_A Serine/threonine-protei 95.0 0.2 7E-06 53.3 13.1 116 361-495 12-139 (339)
344 3s25_A Hypothetical 7-bladed b 94.7 4.9 0.00017 42.1 23.2 172 815-1016 22-218 (302)
345 1xi4_A Clathrin heavy chain; a 94.6 0.93 3.2E-05 56.8 18.9 246 352-637 71-331 (1630)
346 1cru_A Protein (soluble quinop 94.6 2.8 9.6E-05 47.0 22.0 109 892-1003 28-163 (454)
347 2zwa_A Leucine carboxyl methyl 93.1 4 0.00014 48.8 20.8 197 816-1018 396-639 (695)
348 3sre_A PON1, serum paraoxonase 92.3 14 0.00047 39.5 31.8 163 346-530 49-252 (355)
349 3qhy_B Beta-lactamase inhibito 91.6 8.7 0.0003 39.7 18.6 223 808-1068 25-247 (282)
350 3b7f_A Glycosyl hydrolase, BNR 90.9 21 0.00072 38.9 26.7 260 806-1074 54-377 (394)
351 3s25_A Hypothetical 7-bladed b 90.1 20 0.00069 37.4 25.7 175 812-1015 58-256 (302)
352 2zwa_A Leucine carboxyl methyl 89.9 10 0.00035 45.2 19.6 198 859-1073 397-639 (695)
353 3q6k_A 43.2 kDa salivary prote 89.3 26 0.0009 37.6 21.5 155 828-1014 124-306 (381)
354 3qhy_B Beta-lactamase inhibito 89.2 22 0.00075 36.6 20.1 184 808-1015 64-247 (282)
355 4hvt_A Ritya.17583.B, post-pro 88.5 36 0.0012 40.4 22.5 236 810-1066 132-429 (711)
356 3sbq_A Nitrous-oxide reductase 86.1 3.8 0.00013 45.9 11.1 115 806-923 322-480 (638)
357 2wg3_C Hedgehog-interacting pr 83.9 11 0.00036 42.3 14.0 113 892-1005 15-160 (463)
358 4gq2_M Nucleoporin NUP120; bet 80.6 6.7 0.00023 48.6 11.7 82 983-1069 235-319 (950)
359 3uc1_A DNA gyrase subunit A; D 78.7 69 0.0024 33.6 19.4 211 408-635 41-277 (327)
360 2wg3_C Hedgehog-interacting pr 77.1 96 0.0033 34.4 29.0 115 347-474 14-158 (463)
361 4gq2_M Nucleoporin NUP120; bet 77.0 84 0.0029 38.8 20.0 73 564-636 237-316 (950)
362 3b7f_A Glycosyl hydrolase, BNR 71.5 1.2E+02 0.004 32.8 21.6 204 860-1074 22-267 (394)
363 3no0_A DNA gyrase subunit A; D 70.8 96 0.0033 31.6 21.4 113 805-921 66-196 (276)
364 3uc1_A DNA gyrase subunit A; D 66.5 1.3E+02 0.0045 31.5 26.3 158 806-970 94-279 (327)
365 4hvt_A Ritya.17583.B, post-pro 61.9 2.5E+02 0.0085 33.1 28.5 181 827-1017 216-432 (711)
366 1zi0_A DNA gyrase subunit A; b 61.7 1.5E+02 0.0052 30.6 24.7 202 361-592 5-225 (307)
367 3no0_A DNA gyrase subunit A; D 59.6 1.5E+02 0.0053 30.0 20.4 197 807-1014 24-246 (276)
368 4gco_A Protein STI-1; structur 58.5 28 0.00095 30.3 7.7 15 33-47 24-38 (126)
369 4ga2_A E3 SUMO-protein ligase 57.7 37 0.0013 30.6 8.7 97 6-109 10-111 (150)
370 2wpv_A GET4, UPF0363 protein Y 57.6 38 0.0013 35.2 9.4 110 26-174 17-127 (312)
371 2xtc_A F-box-like/WD repeat-co 56.6 3 0.0001 33.7 0.7 23 2-24 14-36 (90)
372 1suu_A DNA gyrase subunit A; t 55.2 2E+02 0.0067 29.8 27.8 201 701-921 7-231 (312)
373 4fhn_B Nucleoporin NUP120; pro 53.3 6.6 0.00023 50.0 3.4 44 984-1027 238-281 (1139)
374 3ma5_A Tetratricopeptide repea 48.9 31 0.0011 28.4 6.0 71 31-107 16-87 (100)
375 3mkr_A Coatomer subunit epsilo 46.4 48 0.0016 34.1 8.3 16 33-48 141-156 (291)
376 3f7f_A Nucleoporin NUP120; nuc 45.6 45 0.0015 39.0 8.3 37 985-1023 223-259 (729)
377 3zwu_A Alkaline phosphatase PH 45.0 48 0.0016 38.0 8.4 59 942-1001 477-548 (592)
378 1wp5_A Topoisomerase IV; broke 45.0 2.9E+02 0.0098 28.8 22.3 167 408-593 38-225 (323)
379 3bu8_A Telomeric repeat-bindin 43.9 65 0.0022 30.7 7.5 116 39-174 89-207 (235)
380 4a9v_A PHOX; hydrolase, beta-p 43.6 57 0.002 36.9 8.5 60 942-1002 477-549 (592)
381 3lpz_A GET4 (YOR164C homolog); 43.0 85 0.0029 32.8 9.2 109 26-173 16-128 (336)
382 3q6k_A 43.2 kDa salivary prote 42.8 3.4E+02 0.012 29.0 23.9 62 431-493 124-197 (381)
383 2lni_A Stress-induced-phosphop 40.7 73 0.0025 27.0 7.6 69 32-107 26-94 (133)
384 1hxi_A PEX5, peroxisome target 40.4 58 0.002 27.9 6.7 72 30-108 25-96 (121)
385 1uuj_A Platelet-activating fac 39.8 5.8 0.0002 31.8 -0.1 45 4-48 21-67 (88)
386 4gcn_A Protein STI-1; structur 39.7 42 0.0015 29.1 5.7 73 32-106 52-125 (127)
387 4fhn_B Nucleoporin NUP120; pro 39.2 49 0.0017 42.0 8.2 40 564-603 239-278 (1139)
388 4gco_A Protein STI-1; structur 39.0 59 0.002 28.1 6.5 93 8-107 28-125 (126)
389 1na3_A Designed protein CTPR2; 38.6 72 0.0025 24.8 6.7 70 31-107 18-87 (91)
390 2lni_A Stress-induced-phosphop 37.8 66 0.0023 27.3 6.8 93 8-107 31-128 (133)
391 3upv_A Heat shock protein STI1 37.4 64 0.0022 27.5 6.6 72 31-109 13-84 (126)
392 2kck_A TPR repeat; tetratricop 36.1 82 0.0028 25.5 6.9 73 30-109 14-88 (112)
393 2dba_A Smooth muscle cell asso 34.5 77 0.0026 27.6 6.8 79 27-109 33-111 (148)
394 3sz7_A HSC70 cochaperone (SGT) 34.4 71 0.0024 28.9 6.7 73 30-109 19-91 (164)
395 1elw_A TPR1-domain of HOP; HOP 34.0 1.3E+02 0.0044 24.5 8.0 15 33-47 15-29 (118)
396 2xcb_A PCRH, regulatory protei 34.0 73 0.0025 28.0 6.5 73 30-109 26-98 (142)
397 3l6v_A GYRA, DNA gyrase subuni 33.6 4.6E+02 0.016 27.8 25.0 158 355-530 4-180 (370)
398 2zux_A YESW protein; beta-prop 33.3 5.7E+02 0.019 28.8 26.9 181 345-538 177-408 (591)
399 3gyz_A Chaperone protein IPGC; 33.1 70 0.0024 28.9 6.2 72 31-109 45-116 (151)
400 4a9v_A PHOX; hydrolase, beta-p 32.9 1.1E+02 0.0039 34.6 8.7 61 347-426 476-548 (592)
401 2nsz_A Programmed cell death p 32.2 1E+02 0.0035 27.0 6.7 21 68-88 13-33 (129)
402 1na0_A Designed protein CTPR3; 31.9 1.4E+02 0.0047 24.6 7.9 17 32-48 19-35 (125)
403 3upv_A Heat shock protein STI1 31.9 1E+02 0.0034 26.2 6.9 76 8-89 19-99 (126)
404 2ion_A PDCD4, programmed cell 31.8 98 0.0034 28.1 6.7 21 68-88 15-35 (152)
405 1elw_A TPR1-domain of HOP; HOP 31.2 85 0.0029 25.7 6.2 70 29-105 45-114 (118)
406 2kc7_A BFR218_protein; tetratr 30.9 95 0.0032 24.8 6.3 57 29-90 7-63 (99)
407 3bqo_A Telomeric repeat-bindin 30.9 1.1E+02 0.0039 28.7 6.8 108 26-141 68-189 (211)
408 4g26_A Pentatricopeptide repea 30.7 1.6E+02 0.0054 33.1 9.9 96 7-107 84-185 (501)
409 1wp5_A Topoisomerase IV; broke 29.8 4.9E+02 0.017 26.9 26.8 190 816-1014 3-225 (323)
410 2vyi_A SGTA protein; chaperone 28.8 1.1E+02 0.0038 25.6 6.7 72 30-108 20-91 (131)
411 2vgx_A Chaperone SYCD; alterna 28.7 1E+02 0.0034 27.5 6.5 73 30-109 29-101 (148)
412 4g26_A Pentatricopeptide repea 28.5 1.9E+02 0.0064 32.5 10.0 93 10-107 122-220 (501)
413 2xev_A YBGF; tetratricopeptide 28.5 1.2E+02 0.0041 25.6 6.9 74 30-108 10-87 (129)
414 2kck_A TPR repeat; tetratricop 28.3 1.2E+02 0.004 24.5 6.6 56 31-90 49-105 (112)
415 2dba_A Smooth muscle cell asso 28.2 2.1E+02 0.0074 24.5 8.8 92 8-106 43-142 (148)
416 2l6j_A TPR repeat-containing p 27.5 1.5E+02 0.0052 23.9 7.2 54 31-90 13-66 (111)
417 1na0_A Designed protein CTPR3; 27.2 1.2E+02 0.0043 24.9 6.7 19 30-48 51-69 (125)
418 3f7f_A Nucleoporin NUP120; nuc 26.8 76 0.0026 37.1 6.2 37 455-495 223-259 (729)
419 2vgx_A Chaperone SYCD; alterna 26.8 1.7E+02 0.0057 26.0 7.6 53 31-89 64-116 (148)
420 2zux_A YESW protein; beta-prop 26.3 7.4E+02 0.025 27.9 23.0 42 452-494 177-246 (591)
421 3kci_A Probable E3 ubiquitin-p 26.0 6.1E+02 0.021 26.9 23.6 199 420-636 62-292 (389)
422 1elr_A TPR2A-domain of HOP; HO 26.0 1.5E+02 0.005 24.8 7.0 59 32-90 48-107 (131)
423 1yqh_A DUF77, IG hypothetical 26.0 5.8 0.0002 33.7 -2.4 35 12-48 30-64 (109)
424 3q49_B STIP1 homology and U bo 25.7 1.3E+02 0.0045 25.6 6.7 73 30-109 17-89 (137)
425 2vyi_A SGTA protein; chaperone 25.6 2E+02 0.0069 23.7 7.9 71 30-107 54-124 (131)
426 3qou_A Protein YBBN; thioredox 25.3 1.1E+02 0.0038 31.1 6.8 15 33-47 128-142 (287)
427 2ibo_A Hypothetical protein SP 25.2 4.9 0.00017 33.9 -3.0 35 12-48 25-59 (104)
428 2epi_A UPF0045 protein MJ1052; 24.4 5.3 0.00018 33.4 -2.9 35 12-48 29-63 (100)
429 4b4t_R RPN7, 26S proteasome re 24.3 2E+02 0.0069 31.4 9.0 85 26-110 172-262 (429)
430 3kci_A Probable E3 ubiquitin-p 23.9 6.7E+02 0.023 26.6 27.1 110 808-921 160-293 (389)
431 1vk8_A Hypothetical protein TM 23.9 8.6 0.00029 32.4 -1.7 35 13-48 38-72 (106)
432 4i17_A Hypothetical protein; T 23.7 2E+02 0.0069 27.5 8.3 75 32-107 86-163 (228)
433 3zwu_A Alkaline phosphatase PH 23.7 1.6E+02 0.0054 33.8 8.0 56 568-624 481-548 (592)
434 2fo7_A Synthetic consensus TPR 23.1 2.3E+02 0.0078 23.4 7.8 70 31-107 44-113 (136)
435 3u4t_A TPR repeat-containing p 22.8 2.1E+02 0.0073 28.1 8.5 55 31-88 46-100 (272)
436 2v5f_A Prolyl 4-hydroxylase su 22.8 1.8E+02 0.006 23.9 6.5 59 31-89 14-73 (104)
437 3as5_A MAMA; tetratricopeptide 22.4 2E+02 0.0068 25.8 7.6 16 32-47 52-67 (186)
438 3sz7_A HSC70 cochaperone (SGT) 22.2 1.3E+02 0.0044 27.1 6.0 75 9-89 27-106 (164)
439 3uq3_A Heat shock protein STI1 22.0 2.1E+02 0.0071 27.7 8.1 73 30-109 147-219 (258)
440 2ho1_A Type 4 fimbrial biogene 21.8 3.8E+02 0.013 25.7 10.1 73 30-107 113-185 (252)
441 3as5_A MAMA; tetratricopeptide 21.8 3E+02 0.01 24.5 8.8 54 30-89 16-69 (186)
442 2kat_A Uncharacterized protein 21.7 1.4E+02 0.0048 24.7 5.8 53 31-89 28-80 (115)
443 3urz_A Uncharacterized protein 21.5 1.3E+02 0.0044 28.7 6.1 78 28-108 10-99 (208)
444 2xcb_A PCRH, regulatory protei 21.5 2.2E+02 0.0077 24.6 7.4 52 31-88 61-112 (142)
445 3k9i_A BH0479 protein; putativ 21.5 83 0.0028 26.4 4.2 55 30-91 35-90 (117)
446 4ga2_A E3 SUMO-protein ligase 21.2 1.4E+02 0.0048 26.5 5.9 95 8-109 46-146 (150)
447 2ovj_A Mgcracgap, RAC GTPase-a 21.1 2.4E+02 0.0082 26.8 7.8 77 26-107 48-135 (201)
448 3k9i_A BH0479 protein; putativ 20.5 44 0.0015 28.2 2.2 69 35-109 3-73 (117)
449 3byi_A RHO GTPase activating p 20.3 2.8E+02 0.0097 26.6 8.2 77 26-107 66-154 (214)
450 2ho1_A Type 4 fimbrial biogene 20.0 2.8E+02 0.0097 26.7 8.6 56 29-90 78-133 (252)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.8e-67 Score=635.12 Aligned_cols=566 Identities=24% Similarity=0.366 Sum_probs=470.7
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
.++.+|++.|+||+|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence 346679999999999999996 999999999999995 566665 37899999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
|++||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+||++ +|++++.|+.+++|+.. ......+.+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999975 44333 5889999999999999999 79999999999999965 4556677889999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|..+.++ +++..+++++.++.+++|+... ........+.. .+..+.++|+++++++
T Consensus 142 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------~v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSS---------------------SVWGVAFSPDGQTIAS 197 (577)
T ss_dssp EEEEEEC--TTSSCEEEEETTSEEEEECTTS-CEEEEEECCSS---------------------CEEEEEECTTSSCEEE
T ss_pred eeeeeee--cCCccceecccccceeccccce-eeeeeccCCCc---------------------ceeeeeecCCCCEEEE
Confidence 9988874 5567899999999999998643 22223333333 4455556666668999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
++.|+.|++||. +++.+..+..+.. .|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------ 266 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------ 266 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred EcCCCEEEEEeC-CCcEEEEEecCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence 999999999996 5677777776644 79999999999999999999999999954 3 45556665554322
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 739 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1102)
.+.+.+++..+++++.|+.+++|+... .....+ .+|.
T Consensus 267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~ 303 (577)
T 2ymu_A 267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS 303 (577)
T ss_dssp -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence 233556788999999999999999653 122222 3588
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..|.+++|+|+++.+++++.|+.+++|++... .+.. +. +|...+.+++|+|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence 99999999999999999999999999986321 1111 12 3888999999999999
Q ss_pred eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEE
Q 001311 820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 898 (1102)
Q Consensus 820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 898 (1102)
+|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 999999 899999995 5688889999999999999999 9999999999999999995 57788899999999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeee
Q 001311 899 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQW 977 (1102)
Q Consensus 899 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~ 977 (1102)
+||+++|++++.|++|++||.... .+....+|. ..|.+++|+|||++|+++ .|+.|++||. +++++..+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 999999999999999999997542 233334444 478999999999999995 8899999995 67777777
Q ss_pred ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311 978 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus 978 ~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
. +|...|++++|+|||++|++++.||.|+|||. +++.+..+. +|... |. +++|+| |+++|+|++.|
T Consensus 505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSD 570 (577)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETT
T ss_pred e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCC
Confidence 6 88999999999999999999999999999996 677777766 55444 66 899999 68999999999
Q ss_pred CcEEEEe
Q 001311 1058 GGVHVFE 1064 (1102)
Q Consensus 1058 g~v~vW~ 1064 (1102)
++|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-65 Score=621.13 Aligned_cols=577 Identities=14% Similarity=0.134 Sum_probs=448.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
+.+.+.+++|+|||++ ||+++ +++|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5778899999999996 77776 5799999998876655 4789999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC----CcEEEEeCCCCeeeEEeecCCCCe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999866543 2235789999999999999999 67777654 3677776 577788899999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++|+++.. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+| ++|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------------~~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------------CEEEEE
Confidence 9999965432 369999999999999988766666666666666666655555 579999
Q ss_pred eCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 655 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 655 (1102)
+.|++|++||+.+++.+..+... ++...|.+++|+|++++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988877421 34558999999999999999999999999999887 4444443221000
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311 656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 735 (1102)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1102)
........++..+++++.|+.+++|+..... ....+
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~---- 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR---- 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence 0000111256789999999999999976532 11111
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +...... ..+|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~--~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVF--PDVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECS--SCSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeec--ccCCcceEEEEEEC
Confidence 45899999999999999999999999999998743 2222111 12388999999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
+++. +++++ |+++++|++.++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8774 55665 99999999876543221 011234568899999 88777776 467899998 444 45554 788
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK 970 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~ 970 (1102)
.+.+++|+|||++||+++.|++|++||+.++.... ... .+|. ..|.+++|+|||++|+++ .|+.|++|++.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998754311 111 2333 479999999999999995 899999999998
Q ss_pred -ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee-E-EEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 971 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 971 -~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~-~-~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
++........+|...|.+++|+|||++||+|+.|++|+|||+.++.. . ..+ .+|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-------~~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-------GAHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-------TSSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-------ccCcccCee--EEEEcC-C
Confidence 66655423335999999999999999999999999999999988753 2 222 244233366 899999 5
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001311 1048 PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
+. |++++.|++|++|++.
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999983
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.7e-63 Score=597.31 Aligned_cols=565 Identities=22% Similarity=0.352 Sum_probs=465.0
Q ss_pred cccccccCCCCccccCCccccccccCCCCCcC-----CCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe
Q 001311 292 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT 366 (1102)
Q Consensus 292 ~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~ 366 (1102)
+++++|+.||++.| ..++|++++... ...+.+|..+ ...+..+.+|.+.|++++|+|||++ ||+|+
T Consensus 6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~-las~~ 76 (577)
T 2ymu_A 6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQT-IASAS 76 (577)
T ss_dssp CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence 35678899999999 999999998733 2334455432 2333444469999999999999996 99999
Q ss_pred cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeE
Q 001311 367 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 446 (1102)
Q Consensus 367 ~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~ 446 (1102)
.|++|+|||. +++.+. .+.+|.+.|.+++|+||+++|++++.|+.+++|+.......
T Consensus 77 ~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~--- 133 (577)
T 2ymu_A 77 DDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 133 (577)
T ss_dssp TTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred CCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence 9999999996 455554 37899999999999999999999999999999998765432
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w 526 (1102)
...+|...|.++.|++++. .+++++.++.+++|+. ..........|...|.++.+ .+++.+|++++.|+.|++|
T Consensus 134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLW 207 (577)
T ss_dssp -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSEEEEE
T ss_pred -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeee--cCCCCEEEEEcCCCEEEEE
Confidence 4678999999999999999 6899999999999994 55666777889999999987 4566899999999999999
Q ss_pred EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC
Q 001311 527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 606 (1102)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 606 (1102)
|.. .+....+..+...|.+++|+| ++++|++++.|+.|++||. +++.+..+..+.
T Consensus 208 ~~~-~~~~~~~~~~~~~v~~~~~s~---------------------dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~-- 262 (577)
T 2ymu_A 208 NRN-GQLLQTLTGHSSSVRGVAFSP---------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-- 262 (577)
T ss_dssp CTT-SCEEEEEECCSSCEEEEEECT---------------------TSSCEEEEETTSCEEEECT-TSCEEEEECCCS--
T ss_pred eCC-CcEEEEEecCCCCEEEEEECC---------------------CCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--
Confidence 964 344455555555555555554 4557999999999999996 567777777664
Q ss_pred CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311 607 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686 (1102)
Q Consensus 607 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
..|.+++|+|+++.|++++.|+.|++|+... +....+.+|...+.
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~--------------------------------- 307 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW--------------------------------- 307 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE---------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE---------------------------------
Confidence 4799999999999999999999999999643 45556666554322
Q ss_pred cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 766 (1102)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 766 (1102)
.+.+.+++..+++++.|+.+++|+.... ....+ .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus 308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 2335667889999999999999997642 22222 3478899999999999999999999999999
Q ss_pred eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC
Q 001311 767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 845 (1102)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~ 845 (1102)
+.. +..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+
T Consensus 372 ~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 372 NRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp ETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred cCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 852 111111 12 2888999999999999999998 899999995 5678889999
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccc
Q 001311 846 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 925 (1102)
Q Consensus 846 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~ 925 (1102)
|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +
T Consensus 425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-- 499 (577)
T 2ymu_A 425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-- 499 (577)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence 999999999999 8999999999999999996 5678889999999999999999999999999999999999653 2
Q ss_pred ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
.+....+|. ..|.+++|+|||++|+++ .|+.|++||. +++++..+. +|.+.|++++|+|||++|++++.|
T Consensus 500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 233445555 489999999999999995 8899999996 677777776 899999999999999999999999
Q ss_pred CeEEEEE
Q 001311 1005 ATVCVFS 1011 (1102)
Q Consensus 1005 g~I~vwd 1011 (1102)
++|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-62 Score=589.36 Aligned_cols=575 Identities=14% Similarity=0.166 Sum_probs=440.1
Q ss_pred cccccCCCCCcC----CCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeee
Q 001311 312 LPVSFTGHSHSH----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 387 (1102)
Q Consensus 312 ~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~ 387 (1102)
+.++|++++... .....+|.... ......+.+|.+.|++++|||||++ ||+|+.|++|+|||+.+++.....
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-- 97 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-- 97 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE--
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE--
Confidence 566777777522 11223343321 2233344579999999999999996 999999999999999765432210
Q ss_pred eeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcC
Q 001311 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 463 (1102)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~ 463 (1102)
.+.+|.+.|.+++|+|||++||+++.+ +.|++|| +++... .+.+|...|.+++|+|
T Consensus 98 ---------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 98 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred ---------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence 367899999999999999999998875 3677776 444443 4789999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe
Q 001311 464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543 (1102)
Q Consensus 464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1102)
++.. .|++|+.|++|++||..+++++..+.+|...|.+++|+ +++.+|++++.|++|++||+.+++....+....
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~-- 232 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-- 232 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccc--
Confidence 9874 59999999999999999999999999999999999985 567899999999999999998876655442100
Q ss_pred eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-CCCcCeEEEcCCCCEEE
Q 001311 544 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLA 622 (1102)
Q Consensus 544 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~ 622 (1102)
....+ +...+.+++|+|++++|++++.|++|++||+.+++++..+..... ...+..+.| ++..++
T Consensus 233 -----------~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 298 (611)
T 1nr0_A 233 -----------LKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV 298 (611)
T ss_dssp -----------SSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred -----------ccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence 00001 223555666666667899999999999999999998888864321 112334455 788999
Q ss_pred EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311 623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 702 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1102)
+++.||.+++|+..++ .....+.+|...+. .+.+.+++
T Consensus 299 s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~-----------------------------------------~l~~spdg 336 (611)
T 1nr0_A 299 SISANGFINFVNPELG-SIDQVRYGHNKAIT-----------------------------------------ALSSSADG 336 (611)
T ss_dssp EEETTCCEEEEETTTT-EEEEEECCCSSCEE-----------------------------------------EEEECTTS
T ss_pred EEeCCCcEEEEeCCCC-CcceEEcCCCCCEE-----------------------------------------EEEEeCCC
Confidence 9999999999999877 56666667765433 23456788
Q ss_pred CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311 703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 782 (1102)
Q Consensus 703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 782 (1102)
.++++++.|++|++||+....... ....+|...|.+++|++++ .+++++.|+.+++|+..........
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~~~~~~------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~----- 404 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK----- 404 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----
T ss_pred CEEEEEeCCCcEEEEECCCCceee------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----
Confidence 999999999999999998643211 1113588999999999876 5889999999999987432211000
Q ss_pred ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001311 783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 862 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 862 (1102)
..... ......+++++|+++.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++
T Consensus 405 ------------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~ 462 (611)
T 1nr0_A 405 ------------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQF 462 (611)
T ss_dssp ------------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCE
T ss_pred ------------eeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCE
Confidence 00000 23446789999999999888899999998 333 55554 778899999999 9999
Q ss_pred EEEEeCCCcEEEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCC
Q 001311 863 IAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPT 939 (1102)
Q Consensus 863 lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 939 (1102)
||+|+.|+.|++||+.+++. +.. .+|...|++|+|+|||++|++++.|++|++|++.+ ++.... ....+|.
T Consensus 463 lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~-- 536 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT-- 536 (611)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS--
T ss_pred EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc--
Confidence 99999999999999987653 233 67999999999999999999999999999999986 332110 0122344
Q ss_pred CCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCC-CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311 940 AQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 940 ~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
..|.+++|+|||++|+++ .|+.|++||+.++.........+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 537 -~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 537 -AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred -cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 489999999999999994 899999999988653221123478 89999999999999 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-61 Score=636.55 Aligned_cols=600 Identities=14% Similarity=0.158 Sum_probs=489.7
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
...+|.+.|++++|||||++ +++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 34569999999999999996 99999999999999999988763 77999999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|++++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998665 57899999999999997655589999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++|+ +++.++++++.||.|++||+.+......+........... ........+.+++|+|++..++++
T Consensus 747 ~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 747 NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED--------PPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------------CCCCCBCCCCBCTTSSEEEEE
T ss_pred EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC--------ccccccceEEEEEECCCCCEEEEE
Confidence 999985 4668999999999999999988766554433221110000 001112356677888888888887
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
+ ++.+.+||+.++..+..+.. .+...+.+++|+|++.++++++.||.|++|++.++ .....+.+|...+.
T Consensus 817 ~-~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~------- 886 (1249)
T 3sfz_A 817 A-KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVH------- 886 (1249)
T ss_dssp E-TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEE-------
T ss_pred c-CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceE-------
Confidence 7 68999999999988877752 33457999999999999999999999999999988 66666766655433
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc-----------
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR----------- 729 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~----------- 729 (1102)
.+.+.+++..+++++.|+.+++|++..........
T Consensus 887 ----------------------------------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 887 ----------------------------------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp ----------------------------------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred ----------------------------------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 23456678899999999999999976421110000
Q ss_pred ---------------cccC----CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccC
Q 001311 730 ---------------SLRL----PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 790 (1102)
Q Consensus 730 ---------------~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1102)
.... ....+...+.+++|+|+++.+++++.+|.|++|++..
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-------------------- 992 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-------------------- 992 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--------------------
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--------------------
Confidence 0000 0012346789999999999999999999999998732
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311 791 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 869 (1102)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 869 (1102)
+..... + .+|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.|
T Consensus 993 --~~~~~~-~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~d 1064 (1249)
T 3sfz_A 993 --NRVFSS-G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFD 1064 (1249)
T ss_dssp --TSCEEE-C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESS
T ss_pred --Cceeee-c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECC
Confidence 221111 2 23889999999999999999998 9999999999987764 557999999999999 55 56788999
Q ss_pred CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311 870 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949 (1102)
Q Consensus 870 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 949 (1102)
|.|++||+.+++....+.+|.+.|++++|+||+++|++++.|++|++||+.+++. .....+|. ..|.+++|+
T Consensus 1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~~~s 1136 (1249)
T 3sfz_A 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCSAFS 1136 (1249)
T ss_dssp SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEEEEC
T ss_pred CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999988653 33444554 479999999
Q ss_pred cCCcEEEEE-eCCeEEEEEcCCceEeeeec-------cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311 950 QDQIHFLVV-HETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 950 pdg~~l~~~-~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
|||++|+++ .||.|++||+.+++.+..+. ..+|.+.|++++|+|||++|++++ |.|++||+.+++.+..+
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence 999999995 78999999999998877651 136889999999999999999885 99999999999887655
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
. +| ...+. +++|+| |+.+|++++.||.|++|++.
T Consensus 1215 ~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1215 Y-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp C-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred e-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence 4 22 22255 799999 68999999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-58 Score=564.73 Aligned_cols=559 Identities=11% Similarity=0.143 Sum_probs=456.2
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC----eeEEeeeeeeeccCCCCccccccccCCCCCC-eEEEEEcc
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 418 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 418 (1102)
.|.+.|++++|+|||++ |++++ ++.|+|||+.++ +... .+.+|.+. |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 47899999999999996 77776 789999999987 5554 47899999 99999999
Q ss_pred --CCCeEEEEECCCeEEEEEccCCc-----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC----CcEEEEeCCCC
Q 001311 419 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 487 (1102)
Q Consensus 419 --dg~~las~~~d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~vWd~~~~ 487 (1102)
|+++||+|+.||.|+|||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| ++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999998651 1223446788999999999999999 78888877 6788887 77
Q ss_pred eeeEEeecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCC---eeeEEEEccCCceeeeccccC
Q 001311 488 AKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR 563 (1102)
Q Consensus 488 ~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~ 563 (1102)
+.+..+.+|...|.+++|+++ +. ++++++.|+.|++||+.+.+....+..+.. .|.+++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------------- 213 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--------------- 213 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE---------------
T ss_pred CcceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE---------------
Confidence 889999999999999998644 44 899999999999999988776666665555 455555
Q ss_pred ceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEE-c---CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 564 SLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 564 ~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
|+|+ +++|++++.||.|++||+.+++.+..+ . .+ ...|.+++|+ ++.+|++++.||.|++||+.++
T Consensus 214 ------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 214 ------FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp ------ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred ------ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 4555 568999999999999999999998888 3 34 4479999999 9999999999999999999987
Q ss_pred ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
+.+..+..+...... .......+++..+++++.++.+++|+
T Consensus 285 -~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 285 -KCVQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp -EEEEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred -cEEEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEE
Confidence 555555443211000 00011123678899999999999999
Q ss_pred cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 798 (1102)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1102)
+...... ..+ .+|...|.+++| |+ +++++.||.|++|++. .
T Consensus 326 ~~~~~~~---~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~--- 366 (615)
T 1pgu_A 326 LGHDEVL---KTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S--- 366 (615)
T ss_dssp TTEEEEE---EEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E---
T ss_pred CCCCcEE---EEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h---
Confidence 8863221 111 348899999999 88 9999999999999862 0
Q ss_pred ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
+. ..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++
T Consensus 367 -~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~ 434 (615)
T 1pgu_A 367 -MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQS 434 (615)
T ss_dssp -EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEET
T ss_pred -hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEec
Confidence 11 238899999999 6677788877 9999999987755432 688999999 88888877 8899999999
Q ss_pred ecceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311 878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 956 (1102)
.+++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+
T Consensus 435 ~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 435 FTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIA 504 (615)
T ss_dssp TTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEE
T ss_pred cCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEE
Confidence 8898888876 88899999999 889999999 9999999998854311 3344444 4899999999999999
Q ss_pred EE-eCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcC----------CCcEEEEEeCCCeEEEEEcCCc-eeEEEeCC
Q 001311 957 VV-HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINP 1023 (1102)
Q Consensus 957 ~~-~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~sp----------d~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~ 1023 (1102)
++ .|+.|++||+.+++.+..+. + |...|++++|+| |+++|++++.||.|++||+.++ +.+..+.
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~- 581 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN- 581 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-
T ss_pred EcCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-
Confidence 95 88999999999999988765 5 899999999999 9999999999999999999998 6776655
Q ss_pred CcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1024 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1024 ~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+|... |. +++|+| |+. |++++.||.|++|++.+
T Consensus 582 ------~h~~~-v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 ------AHKDG-VN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ------SSTTC-EE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ------cCccc-eE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 44333 55 899999 567 99999999999999975
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.7e-57 Score=594.98 Aligned_cols=568 Identities=17% Similarity=0.218 Sum_probs=462.9
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|++|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 5789999999999999999 89999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
|+.+++++..+.+|...|.+++|++..++.++++|+.|+.|++||+.++.....+..|...|.+++|+|++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~--------- 755 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--------- 755 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence 99999999999999999999999887777899999999999999999988777777776666666655555
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-----------CCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 631 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 631 (1102)
+++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 579999999999999999988777664321 123578999999999999987 68999
Q ss_pred EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311 632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 711 (1102)
Q Consensus 632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 711 (1102)
+||..++........+|...+ ....+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence 999998844333333443321 123456788999999999
Q ss_pred CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcc------------
Q 001311 712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 779 (1102)
Q Consensus 712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------ 779 (1102)
+.+++|++........ + .+|...|.+++|+|+|+.+++++.|+.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~---~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVAD---C----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEE---E----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeee---c----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 9999999986432211 1 35889999999999999999999999999999865321111000
Q ss_pred --cc----cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE
Q 001311 780 --TA----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 852 (1102)
Q Consensus 780 --~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~ 852 (1102)
.. .....+++..++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 00 00122333333332221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeec
Q 001311 853 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 932 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~ 932 (1102)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++.. ..
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence 99999 8999999999999999999998866 456899999999999976 6788999999999999987643 22
Q ss_pred CCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 933 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 933 ~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
..+|. ..|.+++|+|+|++++++ .|+.|++||+.+++.+..+. +|...|++++|+|||++|++++.||.|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 33443 378999999999999995 89999999999999887765 8899999999999999999999999999999
Q ss_pred cCCceeEEEeCCCccc--CCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCc
Q 001311 1012 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1070 (1102)
Q Consensus 1012 ~~~~~~~~~~~~~~~~--~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1070 (1102)
+.+++.+..+...... ..+|.. .+. +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATHGG-WVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------CCS-CCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEeccccccccccccCc-eEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999887655321111 112322 255 899999 688998885 9999999999874
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-55 Score=553.45 Aligned_cols=621 Identities=10% Similarity=0.099 Sum_probs=436.6
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
....++|.+.|++++|+|+|++ ||+|+.||+|+|||..+.+... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~-lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNL-LAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTE-EEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCCE-EEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 3445689999999999999995 9999999999999998776553 235788999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee--------
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-------- 490 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~-------- 490 (1102)
|++|++++.|++|+|||+.+++.+.. +. |.+.|++++|+|+++ +|++|+.||+|++||+.++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 88999999999999999999887653 43 778999999999999 7999999999999999998864
Q ss_pred ---EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc--eeeeccccCce
Q 001311 491 ---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSL 565 (1102)
Q Consensus 491 ---~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i 565 (1102)
..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+...- .+.+. .....++...+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCe
Confidence 234679999999999753 33689999999999 99999876665554431000 00000 00111223468
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-----CCC-----------CCCCcCeEEEc----CCC-CEEEEE
Q 001311 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVS 624 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~ 624 (1102)
.+++|+|++++|++++.||.|++||+.+++++.... .+. +...|.+++|+ |++ .+|++|
T Consensus 215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 888899999999999999999999999998776422 121 23368899995 443 567777
Q ss_pred ECC-----CcEEEEEccCCcc-----------------ceeecc-cccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311 625 TND-----NGIKILATSDGIR-----------------LLRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 681 (1102)
Q Consensus 625 ~~d-----g~i~iwd~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1102)
+.+ +.+.+|+...... ..+.+. .+...+. .+..
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~---------------- 350 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NILP---------------- 350 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EEEE----------------
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EEEE----------------
Confidence 665 3788888531100 000000 0000000 0000
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc----cccc--------------------------
Q 001311 682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ----CRSL-------------------------- 731 (1102)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~-------------------------- 731 (1102)
............+...+++.+.|+.+++|++........ ...+
T Consensus 351 -------~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~ 423 (902)
T 2oaj_A 351 -------IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSA 423 (902)
T ss_dssp -------CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHT
T ss_pred -------CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhc
Confidence 000000001112344677888899999999854321100 0000
Q ss_pred ----cCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 732 ----RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 732 ----~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
..+-.+|...+..++|+|+++.+++++.|++|++||+..+..... .++... ... ....+|..
T Consensus 424 ~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~ 489 (902)
T 2oaj_A 424 AQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKEL 489 (902)
T ss_dssp TBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSC
T ss_pred ccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCC
Confidence 001134555666777889999999999999999999865421000 000000 000 00124889
Q ss_pred CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc---------------------------------------------eee
Q 001311 808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMA 841 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~---------------------------------------------~~~ 841 (1102)
.|.+++|+||+++||+|+ ||+|+|||+.+++ ++.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 999999999999999999 9999999998652 367
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-----eec-cccccceeEEEe-----cCC---CEEEE
Q 001311 842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVS 907 (1102)
Q Consensus 842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s 907 (1102)
.+.+|.+.|++++||| || +||+|+.|++|+|||+.+...+. .+. +|.+.|++|+|+ ||| ++|++
T Consensus 570 ~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s 647 (902)
T 2oaj_A 570 AVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC 647 (902)
T ss_dssp EECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred EEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence 7889999999999999 88 99999999999999998876553 343 899999999999 885 89999
Q ss_pred EcCCCcEEEEEc---CCCcccceeeeecCCCCCC--CCCCCcEEE-Ec----------------------cCCcEEEEEe
Q 001311 908 SGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVH 959 (1102)
Q Consensus 908 ~s~Dg~i~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s----------------------pdg~~l~~~~ 959 (1102)
++.|++|++||+ .+++.. ..+.+|.. ....|..++ |+ ++|..|+++
T Consensus 648 gs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~- 721 (902)
T 2oaj_A 648 GTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG- 721 (902)
T ss_dssp EETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-
T ss_pred EecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-
Confidence 999999999999 555432 12222210 113556665 65 556555554
Q ss_pred CCeEEEEEcCCceEeeeeccCCCCCCeeEE---E------EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC
Q 001311 960 ETQLAIFETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1030 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l---~------~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g 1030 (1102)
+..|+||++.++++.+... .|.-.+.++ . |++++..|++++.||+|++|++.+++.+..+.......
T Consensus 722 ~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~-- 797 (902)
T 2oaj_A 722 FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA-- 797 (902)
T ss_dssp SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--
T ss_pred ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc--
Confidence 8899999999999987764 455556665 5 78899999999999999999999999999887322111
Q ss_pred CCCCcccceEEEecCCCCCEEEEEec
Q 001311 1031 VSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus 1031 h~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
...+. ...|++ +|+.+.-.+.
T Consensus 798 --~~~~~--~~~~~~-~G~~~~~~~~ 818 (902)
T 2oaj_A 798 --AKYIT--ESSVLR-NGDIAIRVSE 818 (902)
T ss_dssp --HHHHT--TCEECT-TSCEEEECSS
T ss_pred --ccccc--ceEEcC-CCCEEEEeCh
Confidence 00111 456666 4676665543
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-55 Score=538.22 Aligned_cols=547 Identities=12% Similarity=0.146 Sum_probs=448.4
Q ss_pred cccccCCCCCcC----CCCcCCCCCCCCC---ccceeeccCCCC-eeEEEEec--CCCeEEEEEecCCeEEEEeCCCC--
Q 001311 312 LPVSFTGHSHSH----SHSQAFSTPEDLP---KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR-- 379 (1102)
Q Consensus 312 ~~v~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~h~~~-v~~v~~sp--dg~~llasg~~d~~i~iWd~~~~-- 379 (1102)
..++|++++... ...+.+|..+... .....+.+|.+. |++++|+| ++++ |++|+.||.|+|||+.++
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCcc
Confidence 666677766422 2234455544220 344555569999 99999999 9995 999999999999999755
Q ss_pred ------eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC----CeEEEEEccCCceeeeEEEe
Q 001311 380 ------ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEI 449 (1102)
Q Consensus 380 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~v~vwd~~~~~~~~~~~~l 449 (1102)
+.+. .+.+|...|.+++|+|++++|++++.+ +.|++|| +++.+. .+
T Consensus 101 ~~~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~ 156 (615)
T 1pgu_A 101 SNSVEVNVKS-------------------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EV 156 (615)
T ss_dssp GTEEEEEEEE-------------------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---EC
T ss_pred cccccccccc-------------------hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---ee
Confidence 2222 367899999999999999999999988 6888888 444443 57
Q ss_pred eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC---CeEEEeeeecCC-ccEEEEEeCCCeEEE
Q 001311 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN-IQFIFSTALDGKIKA 525 (1102)
Q Consensus 450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~s~dg~i~~ 525 (1102)
.+|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|++ + +.+|++++.||.|++
T Consensus 157 ~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISC 233 (615)
T ss_dssp CSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEE
T ss_pred ecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEE
Confidence 899999999999999975 699999999999999999999999999999 999999854 4 689999999999999
Q ss_pred EEcCCCCCeeee-c---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc
Q 001311 526 WLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 526 wd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 601 (1102)
||+.+++....+ . .+...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL----------------------DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES----------------------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEeEEecccccccCCceEEEEEc----------------------CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 999987776666 4 555555555555 44679999999999999999999998887
Q ss_pred CCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001311 602 ADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 679 (1102)
Q Consensus 602 ~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1102)
.+.. ...+.++.|. ++.++++++.||.|++||+.++ +.+..+.+|...+..
T Consensus 292 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~------------------------- 344 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA------------------------- 344 (615)
T ss_dssp CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE-------------------------
T ss_pred CCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE-------------------------
Confidence 6521 2346677775 9999999999999999999886 666677666554331
Q ss_pred ccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec
Q 001311 680 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 759 (1102)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 759 (1102)
+.+ ++ +++++.|+.+++|++.. +. ..|...|.+++| +++..+++++.
T Consensus 345 ----------------~~~-~~---l~~~~~dg~i~~w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~ 391 (615)
T 1pgu_A 345 ----------------LTV-NP---LISGSYDGRIMEWSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISW 391 (615)
T ss_dssp ----------------EET-TT---TEEEETTSCEEETTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEET
T ss_pred ----------------EEe-cC---cEEECCCCeEEEEEchh---------hc---CcccCceEEEEE-CCCcEEEEEeC
Confidence 122 23 89999999999999871 11 348899999999 66778999999
Q ss_pred CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce
Q 001311 760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT 839 (1102)
Q Consensus 760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~ 839 (1102)
|+.+++|++..... ...+.+++++|++.+++++.++.+.+|++.+++.
T Consensus 392 d~~i~~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 439 (615)
T 1pgu_A 392 DDTLKVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 439 (615)
T ss_dssp TTEEEETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEcccCcc--------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence 99999998743211 1257889999999999998899999999999998
Q ss_pred eeeecCCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeecceee-eeeccccccceeEEEecCCCEEEEEcCCCcEEEE
Q 001311 840 MATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917 (1102)
Q Consensus 840 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw 917 (1102)
+..+. |...+.+++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++|
T Consensus 440 ~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 440 IKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp EEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEe
Confidence 88887 88899999998 679999999 999999999988766 7788899999999999999999999999999999
Q ss_pred EcCCCcccceeeeecCCC-CCCCCCCCcEEEEcc----------CCcEEEEE-eCCeEEEEEcCCc-eEeeeeccCCCCC
Q 001311 918 SSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ----------DQIHFLVV-HETQLAIFETTKL-ECVKQWVPRESSA 984 (1102)
Q Consensus 918 d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp----------dg~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~h~~ 984 (1102)
|+.+++. +....+ |. ..|.+++|+| ++++|+++ .|+.|++||+.++ +.+..+. +|..
T Consensus 516 ~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~ 585 (615)
T 1pgu_A 516 DLQSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKD 585 (615)
T ss_dssp ETTTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTT
T ss_pred eCCCCcc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCcc
Confidence 9998654 333333 43 4899999999 99999995 7999999999998 6666654 8899
Q ss_pred CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 985 PITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
.|++++|+||++ |++++.||+|++|+++++
T Consensus 586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 586 GVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp CEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred ceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 999999999999 999999999999998753
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-54 Score=543.07 Aligned_cols=581 Identities=11% Similarity=0.083 Sum_probs=415.9
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
..+|.+.|++++|+||+++||+|+.||+|+||+..+++... ...|...|.+++|+| ++ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45899999999999999999999999999999998766443 235888999999999 77 799999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-----------eeecCCCCeeeEEEEccC
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD 552 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 552 (1102)
+.+++++..+. |.+.|++++|+ +++++|++|+.||.|++||+++.... ..+..|..
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~---------- 152 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS---------- 152 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC----------
T ss_pred CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC----------
Confidence 99999999887 77899999985 56689999999999999999875432 11122333
Q ss_pred CceeeeccccCceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------CCCCCcCeEEEc
Q 001311 553 GTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFN 615 (1102)
Q Consensus 553 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s 615 (1102)
.+.+++|+|+ +..+++++.||.| +||+++++.+..+..+ .+...|.+++|+
T Consensus 153 -----------~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 153 -----------PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp -----------CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred -----------CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 4555555553 3578999999999 9999999998888755 112469999999
Q ss_pred CCCCEEEEEECCCcEEEEEccCCccceee--cc---cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311 616 KDGCLLAVSTNDNGIKILATSDGIRLLRT--FE---NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 690 (1102)
Q Consensus 616 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1102)
|+|++|++++.||.|++||+.++ +.+.. +. .|... ...+.. .+. ...++
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~-----------------~~~~V---- 274 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SST-----------------NAAKI---- 274 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSS-----------------CCCEE----
T ss_pred CCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Ccc-----------------ccCCe----
Confidence 99999999999999999999887 33321 21 11100 000000 000 00000
Q ss_pred CCCCCccc----cCCC-CccccccCC-----CccceEecccCCC---------------CCccccccCCCcccccceEEE
Q 001311 691 GMNGDVRS----LADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRL 745 (1102)
Q Consensus 691 ~~~~~~~~----~~~~-~~l~~~~~d-----~~i~~w~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~ 745 (1102)
..+.+ .+++ ..+++++.+ ..+.+|++..... ....+.+. ..+...|.++
T Consensus 275 ---~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~v~~~ 348 (902)
T 2oaj_A 275 ---SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP---LPTNVPIVNI 348 (902)
T ss_dssp ---EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC---CSSSSCEEEE
T ss_pred ---eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe---cCCCCceEEE
Confidence 00111 2333 455666554 3677888532100 00111111 1245678888
Q ss_pred EEcc----------CCceEEEeecCceEEeeeccccccCCC---------Cc---c----cccccceeccCCC---cccc
Q 001311 746 IFTN----------SGNAILALASNAIHLLWKWQRTERNSS---------GK---A----TASVAPQLWQPPS---GIMM 796 (1102)
Q Consensus 746 ~~s~----------~g~~l~~~~~dg~i~iw~~~~~~~~~~---------~~---~----~~~~~~~~w~~~~---~~~~ 796 (1102)
.+.+ +...+++++.|+.+++|++..+..... +. . ......++|+... +..
T Consensus 349 ~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~- 427 (902)
T 2oaj_A 349 LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK- 427 (902)
T ss_dssp EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-
T ss_pred EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-
Confidence 8765 334688888999999999854311000 00 0 0001112343210 111
Q ss_pred ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee--eee---------cCCCCCeeEEEEecCCCcEEE
Q 001311 797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MPPPPAATFLAFHPQDNNIIA 864 (1102)
Q Consensus 797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~--~~~---------~~~~~~i~~l~~sp~d~~~la 864 (1102)
...+. +|...+.+++|+||+++|++|+ |++|++||+.++... ..+ .+|...|.+++|+| |+++||
T Consensus 428 ~~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LA 504 (902)
T 2oaj_A 428 DYLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELA 504 (902)
T ss_dssp CCSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEE
T ss_pred CCccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEE
Confidence 11232 3777888899999999999999 999999999887432 111 17889999999999 999999
Q ss_pred EEeCCCcEEEEEeecce---------------------------------------------eeeeeccccccceeEEEe
Q 001311 865 IGMDDSSIQIYNVRVDE---------------------------------------------VKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 865 sg~~dg~v~vwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~s 899 (1102)
+|+.||+|+|||+.+++ ++..+.+|.+.|++|+||
T Consensus 505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS 584 (902)
T 2oaj_A 505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS 584 (902)
T ss_dssp EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC
T ss_pred EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec
Confidence 99999999999998762 467788999999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC-CCCCCCCCCcEEEEc-----cCC---cEEEEE-eCCeEEEEEc-
Q 001311 900 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLVV-HETQLAIFET- 968 (1102)
Q Consensus 900 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----pdg---~~l~~~-~d~~i~iwd~- 968 (1102)
||| +||+|+.|++|++||+++........+..+. +|. ..|++++|+ ||| ++|+++ .|++|++||+
T Consensus 585 pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 585 NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 999 9999999999999999875542211122332 555 489999999 886 888884 8999999999
Q ss_pred --CCceEeeeeccC---CCCCCeeEEE-Ec----------------------CCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311 969 --TKLECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus 969 --~~~~~~~~~~~~---~h~~~v~~l~-~s----------------------pd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
.+|++...+..+ .|.++|.+++ |+ +++.+|+++ +..||||++.+++..++
T Consensus 661 p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k 738 (902)
T 2oaj_A 661 PASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHK 738 (902)
T ss_dssp ECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEE
T ss_pred cCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceee
Confidence 888887776532 1357888887 66 556555544 88999999999998876
Q ss_pred eCCCcccCCCCCCCcccceEE---E------ecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1021 INPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1021 ~~~~~~~~~gh~~~~v~~~~v---~------f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.- +|. ..+. ++ . |++ ++..|++++.||+|++|++.+.+
T Consensus 739 ~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 739 GF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp EC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCC
T ss_pred Ec-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchH
Confidence 53 221 2233 33 5 666 57899999999999999999998
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.1e-46 Score=468.55 Aligned_cols=467 Identities=16% Similarity=0.216 Sum_probs=376.0
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
...+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+|++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARK 67 (814)
T ss_dssp EEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGG
T ss_pred eeecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCC
Confidence 34569999999999999996 99999999999999999987763 67899999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCC
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAP 499 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~ 499 (1102)
++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|...
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 999999999999999999988655 5788999999999999999 7999999999999999987 777889999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC--CCCEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRF 577 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~--~~~~l 577 (1102)
|.+++|++ .++..|++++.||.|++||+........+..+. ...+.+++|+| ++.++
T Consensus 143 v~~~~~~p-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 143 VMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EEEEEEET-TEEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEE
T ss_pred EEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEE
Confidence 99999864 155799999999999999998766554443322 23455555555 66789
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 657 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 657 (1102)
++++.||.|++||+.+++.+..+..+.. .|.+++|+|++.+|++++.||.|++||..++ .....+.
T Consensus 202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~----------- 267 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN----------- 267 (814)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-----------
Confidence 9999999999999999999988886644 7999999999999999999999999998776 3322221
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311 658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737 (1102)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 737 (1102)
.
T Consensus 268 -------------------------------------------------------------------------------~ 268 (814)
T 3mkq_A 268 -------------------------------------------------------------------------------V 268 (814)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred cccceEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 738 RATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
+...+.+++|+|++..+ ++++.++.+.+|++. .....+.++|
T Consensus 269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~ 311 (814)
T 3mkq_A 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDP 311 (814)
T ss_dssp SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECS
T ss_pred CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECC
Confidence 45678999999998753 666777778888751 1234577889
Q ss_pred CCCeEEEEe-CC---eEEE------EEcCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 817 NDSYVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 817 d~~~las~s-dg---~I~i------wd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
+++.+++++ +. .+.. |++..+... ..+..+...+.+++|+| ++++|++++ ||.+.+|++.....
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~ 389 (814)
T 3mkq_A 312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN 389 (814)
T ss_dssp SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE
T ss_pred CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc
Confidence 999988876 32 1222 333333322 33455677899999999 999999998 89999999764432
Q ss_pred eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC---cEEEE-E
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-V 958 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~-~ 958 (1102)
.+.+.|.+++|+||+++|++++.|++|++|+.-. ++. ..+..++|+|+| .+|++ +
T Consensus 390 -----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~ 448 (814)
T 3mkq_A 390 -----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVK 448 (814)
T ss_dssp -----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEE
T ss_pred -----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEe
Confidence 2457799999999999999999999999996432 111 256888999998 45555 6
Q ss_pred eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEE------eCCCeEEEEE
Q 001311 959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVFS 1011 (1102)
Q Consensus 959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~------s~Dg~I~vwd 1011 (1102)
.++.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|.
T Consensus 449 ~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 449 SDGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ETTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred cCCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 99999999999999988876 3333 99999999999999 6666555543
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-44 Score=450.80 Aligned_cols=467 Identities=16% Similarity=0.211 Sum_probs=373.3
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.||.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999987665 5778999999999999999 79999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
|+.+++.+..+.+|.+.|.+++|+ +++.+|++++.||.|++||+.+. .....+..+...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 999999999999999999999985 55679999999999999999876 333445555555555555551
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCc
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.+|++++.||.|++||..++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 34579999999999999999888877776543 24689999999 9999999999999999998776
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
.....+.
T Consensus 219 ~~~~~~~------------------------------------------------------------------------- 225 (814)
T 3mkq_A 219 SCVATLE------------------------------------------------------------------------- 225 (814)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 3332221
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 2567899999999999999999999999998732 221111
Q ss_pred cCCCCCCCCeeEEEEecCCC--eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc---EEE
Q 001311 800 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI 874 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~--~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~v 874 (1102)
+. .+...+.+++|+|++. +++++.++.+.+|++.... ..++++| +++++++++.+.. +..
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2678899999999997 5777779999999876432 3567888 8888888776652 211
Q ss_pred ------EEeeccee----eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311 875 ------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 944 (1102)
Q Consensus 875 ------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1102)
|++..+.. ...+..|...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence 22233322 234456777899999999999999998 8999999986532211 13678
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCCceeEEE
Q 001311 945 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus 945 ~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
+++|+|||++++++ .++.|++|+.. .+|...+.+++|+||+ ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999996 78999999632 2567789999999999 6889999999999999999999988
Q ss_pred eCCCcccCCCCCCCcccceEEEecCCCCCEEEEE------ecCCcEEEEe
Q 001311 1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1064 (1102)
Q Consensus 1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~------~~Dg~v~vW~ 1064 (1102)
+. +| .. .+.|+| |+++|+++ +.|+.+.+|.
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 87 22 11 699999 68999999 5555555554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.9e-40 Score=375.36 Aligned_cols=307 Identities=16% Similarity=0.308 Sum_probs=263.7
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.+.+|.+.|++++|+|++++ +++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~-l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG 162 (410)
T ss_dssp EEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred eecccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCC
Confidence 35679999999999999995 9999999999999999987765 478999999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
++|++|+.|++|+|||+.+++++. .+.+|...|.+++|+|++. +|++|+.|++|++||+.++.++..+.+|...|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 999999999999999999987665 5789999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.++.+ .+++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.+|++|
T Consensus 238 ~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 238 RMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG 314 (410)
T ss_dssp EEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred EEEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEE
Confidence 99987 4667899999999999999999998888999999999999999986532111111 11112233457899999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
+.|+.|++||+.++.++..+.+|.. .|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~-------------- 377 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN-------------- 377 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred eCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc--------------
Confidence 9999999999999999999887654 7999999999999999999999999998766 3332221
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
+|..
T Consensus 378 ----------------------------------------------------------------------------~h~~ 381 (410)
T 1vyh_C 378 ----------------------------------------------------------------------------AHEH 381 (410)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2677
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeec
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKW 768 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~ 768 (1102)
.|.+++|+|++.+|++++.|+.|++|++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8999999999999999999999999985
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.7e-39 Score=357.56 Aligned_cols=290 Identities=19% Similarity=0.301 Sum_probs=250.9
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.+.+|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+.. +..|...|.+++|+|+|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTTS
T ss_pred eecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCCC
Confidence 35569999999999999995 99999999999999999887763 67899999999999999
Q ss_pred CeEEEEECCCeEEEEEccCCce-eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
++||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|.+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9999999999999999987642 233446889999999999998875 889999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
|.+++|+ +++.++++|+.|+.|++||++++.....+..|...|.+++|+|+ +++|++
T Consensus 187 v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~---------------------~~~l~s 243 (340)
T 1got_B 187 VMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---------------------GNAFAT 243 (340)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT---------------------SSEEEE
T ss_pred eEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC---------------------CCEEEE
Confidence 9999985 46689999999999999999988777777666665655555555 458999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 659 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1102)
++.||.|++||+.+++.+..+........|.+++|+|++++|++|+.||.|++||+.++ .....+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~-------------- 308 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-------------- 308 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence 99999999999999988888775554457899999999999999999999999998766 222222
Q ss_pred CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 739 (1102)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 739 (1102)
.+|.
T Consensus 309 ----------------------------------------------------------------------------~~h~ 312 (340)
T 1got_B 309 ----------------------------------------------------------------------------AGHD 312 (340)
T ss_dssp ----------------------------------------------------------------------------ECCS
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 1377
Q ss_pred cceEEEEEccCCceEEEeecCceEEeee
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
..|.+++|+|+|.+|++++.|+.|++||
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8899999999999999999999999996
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-38 Score=358.32 Aligned_cols=293 Identities=17% Similarity=0.274 Sum_probs=252.9
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.+.+|.+.|+|++|+||+++ |++|+.||+|+|||..+++.... +..|...|.+++|+|+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPSG 118 (354)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTTS
T ss_pred EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCCC
Confidence 35579999999999999995 99999999999999998877663 56788899999999999
Q ss_pred CeEEEEECCCeEEEEEccCCce---eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
++||+|+.|+.+++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++||+.+++++..+.+|.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence 9999999999999999875421 122335778999999999999999 79999999999999999999999999999
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
..|.+++|++++++.+|++|+.||.|++||++++.....+..|...|.+++|+|++ ++|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l 255 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DAF 255 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CEE
Confidence 99999999887778899999999999999999888777777666666665555554 579
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 657 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 657 (1102)
++++.|++|++||+..++.+..+..+.....+.+++|+|++.+|++++.|+.|++||+.++ ..+..+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------ 322 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------ 322 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence 9999999999999999888887765554456789999999999999999999999998776 222222
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311 658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737 (1102)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 737 (1102)
.+
T Consensus 323 ------------------------------------------------------------------------------~~ 324 (354)
T 2pbi_B 323 ------------------------------------------------------------------------------FG 324 (354)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------EC
Confidence 13
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeee
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
|...|.+++|+|+|++|++++.|+.|++|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 778899999999999999999999999995
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-39 Score=370.07 Aligned_cols=306 Identities=17% Similarity=0.313 Sum_probs=259.4
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 527 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd 527 (1102)
.+.+|.++|++++|+|++. +|++|+.|++|+|||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||
T Consensus 103 ~l~gh~~~V~~~~~~p~~~--~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred eecccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence 4789999999999999999 89999999999999999999999999999999999985 5668999999999999999
Q ss_pred cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 607 (1102)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 607 (1102)
+.+......+..|...|.+++|+|++ ++|++++.|+.|++||+.++.++..+.+|..
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---------------------~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-- 235 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-- 235 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---------------------CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--
Confidence 99877777776666666655555554 5799999999999999999999999987644
Q ss_pred CcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001311 608 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 687 (1102)
Q Consensus 608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1102)
.|.++.+++++.+|++++.||.|++||+.++ .....+.
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~----------------------------------------- 273 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELR----------------------------------------- 273 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEec-----------------------------------------
Confidence 7999999999999999999999999998776 3322221
Q ss_pred ccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311 688 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 767 (1102)
Q Consensus 688 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~ 767 (1102)
+|...|.+++|+|++.+.......
T Consensus 274 -------------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~~------- 297 (410)
T 1vyh_C 274 -------------------------------------------------EHRHVVECISWAPESSYSSISEAT------- 297 (410)
T ss_dssp -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGCC-------
T ss_pred -------------------------------------------------CCCceEEEEEEcCcccccchhhhc-------
Confidence 266778899999887532110000
Q ss_pred ccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001311 768 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 846 (1102)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~ 846 (1102)
.........++.+|++|+ |++|++||+.++.++..+.+|
T Consensus 298 ----------------------------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 298 ----------------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp ----------------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ----------------------------------------cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 001112234678999999 999999999999999999999
Q ss_pred CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.|++|+||++
T Consensus 338 ~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 338 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999986
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=350.18 Aligned_cols=288 Identities=17% Similarity=0.280 Sum_probs=247.9
Q ss_pred ccCCCCCCeEEEEEccC----CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 403 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
.+.+|.+.|++++|+|+ +++||+|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~ 103 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAH 103 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCc
Confidence 36799999999999984 67999999999999999988753 23346889999999999999999 8999999999
Q ss_pred EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
|++||+.+++++..+..|...+.+++|+ +++++|++++.||.|++|++.++.....+..+...+.+++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~---------- 171 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA---------- 171 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE----------
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE----------
Confidence 9999999999999999999999999884 5668999999999999999998777666665555555554
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
|+|++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 172 -----------~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 172 -----------YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred -----------ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC--ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 555556899999999999999999999999886644 7999999999999999999999999997654
Q ss_pred ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
.....+
T Consensus 239 -~~~~~~------------------------------------------------------------------------- 244 (321)
T 3ow8_A 239 -NLAGTL------------------------------------------------------------------------- 244 (321)
T ss_dssp -CEEEEE-------------------------------------------------------------------------
T ss_pred -ceeEEE-------------------------------------------------------------------------
Confidence 111100
Q ss_pred cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 798 (1102)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1102)
T Consensus 245 -------------------------------------------------------------------------------- 244 (321)
T 3ow8_A 245 -------------------------------------------------------------------------------- 244 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
.+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus 245 ----~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 245 ----SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred ----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 01677788999999999999998 89999999999999999999999999999999 8999999999999999996
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=351.49 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=246.9
Q ss_pred EeeccccCEEEEEEcCC----CCeeEEEEecCCCcEEEEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCC
Q 001311 448 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 521 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d----~~~~~l~s~~~d~~i~vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg 521 (1102)
.+.+|.+.|++++|+++ +. +|+||+.|++|+|||+.+++. ...+.+|...|.+++|+ +++.++++++.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDA 102 (321)
T ss_dssp ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTS
T ss_pred ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCC
Confidence 46789999999999985 45 799999999999999988764 45789999999999985 5567999999999
Q ss_pred eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc
Q 001311 522 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 601 (1102)
+|++||+.+++....+..+...+.++ +|+|++++|++++.||.|++||+.+++....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~---------------------~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTL---------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCE---------------------EECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEE---------------------EECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 99999999877666665555444444 455555689999999999999999999888887
Q ss_pred CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311 602 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 681 (1102)
Q Consensus 602 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1102)
.+.. .+.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 162 ~~~~--~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~----------------------------------- 203 (321)
T 3ow8_A 162 TRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLE----------------------------------- 203 (321)
T ss_dssp CSSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------------------------------
T ss_pred CCCc--eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc-----------------------------------
Confidence 6644 6899999999999999999999999998765 2111110
Q ss_pred ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCc
Q 001311 682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 761 (1102)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg 761 (1102)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee
Q 001311 762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 840 (1102)
Q Consensus 762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~ 840 (1102)
+|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus 204 ------------------------------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 204 ------------------------------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp ------------------------------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred ------------------------------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 1666788899999999999998 899999999999999
Q ss_pred eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 841 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 841 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
..+.+|...|.+++|+| ++++|++|+.||+|+|||+.+++++..+.+|.+.|++++|+|++++|++++.|++|+|||..
T Consensus 242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999963
No 19
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=368.10 Aligned_cols=341 Identities=16% Similarity=0.212 Sum_probs=275.0
Q ss_pred cCCCCCCeEEEEEccCCC-eEEEEECCCeEEEEEc----cCCce---eeeEEEeec----------cccCEEEEEEcCCC
Q 001311 404 VKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE---VRQHLEIDA----------HVGGVNDIAFSHPN 465 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~-~las~~~d~~v~vwd~----~~~~~---~~~~~~l~~----------h~~~V~~v~~s~d~ 465 (1102)
...|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++. +.....+.. |.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345678999999999999 9999999999999999 88772 001112332 68899999999999
Q ss_pred CeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe--
Q 001311 466 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-- 543 (1102)
Q Consensus 466 ~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-- 543 (1102)
+ +|++++.|+.|++|| .+++.+..+.+|...|.+++|+ +++.+|++++.||.|++||+.++.....+..+...
T Consensus 121 ~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 121 N--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp S--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred C--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 9 799999999999999 7888999999999999999985 56689999999999999999988777766655443
Q ss_pred -eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEE
Q 001311 544 -CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 622 (1102)
Q Consensus 544 -v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 622 (1102)
+....+.+++. .+.++.++++ ..+++++.+|.|++||+.+++.+..+..+. ..|.+++|+|++++|+
T Consensus 196 ~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 196 SINAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLL 263 (425)
T ss_dssp ----------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEE
T ss_pred ceeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEE
Confidence 11111111111 2445555554 348899999999999999999888887654 4799999999999999
Q ss_pred EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311 623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 702 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1102)
+++.||.|++||+.++ +....+
T Consensus 264 ~~~~d~~i~i~d~~~~-~~~~~~--------------------------------------------------------- 285 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG-NSQNCF--------------------------------------------------------- 285 (425)
T ss_dssp EEETTSCEEEECSSSB-SCSEEE---------------------------------------------------------
T ss_pred EEcCCCEEEEEECCCC-ccceEe---------------------------------------------------------
Confidence 9999999999997654 111000
Q ss_pred CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311 703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 782 (1102)
Q Consensus 703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 782 (1102)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001311 783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 861 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 861 (1102)
..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus 286 --------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 343 (425)
T 1r5m_A 286 --------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQ 343 (425)
T ss_dssp --------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSS
T ss_pred --------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCC
Confidence 0156678888899988 777777 89999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecce--------------------eeeeeccccc--cceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 862 IIAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 862 ~lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
+|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999999999888 8899999976 9999999999999999999999999998
Q ss_pred CC
Q 001311 920 DG 921 (1102)
Q Consensus 920 ~~ 921 (1102)
++
T Consensus 424 ~g 425 (425)
T 1r5m_A 424 PG 425 (425)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-37 Score=348.76 Aligned_cols=287 Identities=14% Similarity=0.264 Sum_probs=242.4
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 524 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~ 524 (1102)
...++.+|.+.|++++|+||++ +|++|+.|++|++||+.+++.+..+..|...|.+++|+ +++.+|++|+.|+.|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA--PSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC--TTSSEEEEEETTCEEE
T ss_pred hheeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC--CCCCEEEEEeCCCeEE
Confidence 3446899999999999999999 89999999999999999999999999999999999985 5668999999999999
Q ss_pred EEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311 525 AWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600 (1102)
Q Consensus 525 ~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 600 (1102)
+|++.+... ...+..|...+.++.|++++ .+++++.|+.|++||+.+++.+..+
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----------------------QIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC----------------------cEEEEECCCcEEEEECCCCcEEEEE
Confidence 999987542 22344455555555554443 3899999999999999999999988
Q ss_pred cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311 601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 680 (1102)
Q Consensus 601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1102)
.+|. ..|.+++|+|+++++++++.||.|++||+.++ .....+
T Consensus 181 ~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~----------------------------------- 222 (340)
T 1got_B 181 TGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTF----------------------------------- 222 (340)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE-----------------------------------
T ss_pred cCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEE-----------------------------------
Confidence 8664 47999999999999999999999999998665 111111
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311 681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T 1got_B 223 -------------------------------------------------------------------------------- 222 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311 761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 839 (1102)
Q Consensus 761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~ 839 (1102)
.+|...|.+++|+|++++|++++ |++|++||+.+++.
T Consensus 223 ------------------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 223 ------------------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp ------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ------------------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 01566677888888888888888 78888888888777
Q ss_pred eeeecC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEE
Q 001311 840 MATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917 (1102)
Q Consensus 840 ~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw 917 (1102)
+..+.. +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+||+++|++++.|++|+||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 666643 334799999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred E
Q 001311 918 S 918 (1102)
Q Consensus 918 d 918 (1102)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.9e-39 Score=359.74 Aligned_cols=324 Identities=14% Similarity=0.173 Sum_probs=232.1
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
.-..+.+.+++. ++.++.+.....|++... ....|...|++++|||||++||+|+
T Consensus 7 ~~sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s 61 (357)
T 4g56_B 7 HSSGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAAS 61 (357)
T ss_dssp ----------------------------------------------------------CCCSEEEEEEECSSSCEEEEEE
T ss_pred cccCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEc
Confidence 334556666665 344444577888987532 2457999999999999999999999
Q ss_pred C------CCeEEEEEccCCceeee-EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE----EeecC
Q 001311 428 S------RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGH 496 (1102)
Q Consensus 428 ~------d~~v~vwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~----~~~~h 496 (1102)
. |+.|++|+..++..... .....+|...|.+++|+|+++ +++++.||+|+|||+.+++.+. ...+|
T Consensus 62 ~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h 138 (357)
T 4g56_B 62 SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEH 138 (357)
T ss_dssp CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence 8 77899999887654321 123457999999999999986 6678889999999999887643 44589
Q ss_pred CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
...|.+++|+ +++.+|++|+.|+.|++||+.++.....+..|...|.+++|++++. .+
T Consensus 139 ~~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~ 196 (357)
T 4g56_B 139 DDIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TI 196 (357)
T ss_dssp SSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SC
T ss_pred CCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ce
Confidence 9999999985 5668999999999999999999888888888888888888877764 45
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311 577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 655 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 655 (1102)
+++++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~--------- 266 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA--------- 266 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC---------
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe---------
Confidence 89999999999999999988877766555667899999997 578999999999999998765 2211110
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311 656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 735 (1102)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1102)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
+|...|++++|+
T Consensus 267 --------------------------------------------------------------------~~~~~v~~l~~s 278 (357)
T 4g56_B 267 --------------------------------------------------------------------VHSQNITGLAYS 278 (357)
T ss_dssp --------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred --------------------------------------------------------------------ccceeEEEEEEc
Confidence 155667788888
Q ss_pred cCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 816 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 816 ~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
|++ ++|++++ |++|+|||++++++++.+ +|...|++++|+|.++++|++|+.||+|++|++.+.
T Consensus 279 p~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 279 YHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 876 4688888 899999999988777655 799999999999877999999999999999999764
No 22
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-37 Score=343.94 Aligned_cols=301 Identities=19% Similarity=0.254 Sum_probs=243.5
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|+|||+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCC
Confidence 44699999999999987546999999999999998643221111 1114789999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
+|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||++ ++++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999998655 5889999999999999999 79999999999999985 677888999999999
Q ss_pred EEeeeecC----CccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 502 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 502 ~v~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
++.|.+.. ++.++++++.|+.|++||+.+......+..|...|.+++|+|+ +++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~---------------------g~~l 211 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD---------------------GTLI 211 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT---------------------SSEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC---------------------CCEE
Confidence 99986532 4558999999999999999887666666666655555555554 4589
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 657 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 657 (1102)
++++.||.|++||+.+++.+..+..+. .|.+++|+|++.+|++++.+ .+++|++... ..+..+..+...
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------ 280 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------ 280 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------
Confidence 999999999999999999998887543 59999999999999988764 5999998765 333222211000
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311 658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737 (1102)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 737 (1102)
....
T Consensus 281 ----------------------------------------------------------------------------~~~~ 284 (319)
T 3frx_A 281 ----------------------------------------------------------------------------YSKA 284 (319)
T ss_dssp ----------------------------------------------------------------------------CCGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0012
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQR 770 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 770 (1102)
+...+.+++|+|+|++|++++.|+.|++|++.+
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 556789999999999999999999999999743
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-37 Score=340.00 Aligned_cols=254 Identities=21% Similarity=0.348 Sum_probs=217.5
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|+++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred ecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence 3459999999999999996 99999999999999999887763 678999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCe
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 500 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v 500 (1102)
+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|...|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 99999999999999999988665 5889999999999999999 7999999999999999987 5567889999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 579 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 579 (1102)
.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+. +++.+|++
T Consensus 144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s 203 (304)
T 2ynn_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT 203 (304)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence 99999652 457999999999999999987655444332 2233444433331 25578999
Q ss_pred EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311 580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 643 (1102)
Q Consensus 580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 643 (1102)
++.|+.|++||+.+++++..+.+|.. .|.+++|+|++.+|++++.||+|++||..++ +..+
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~ 264 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEK 264 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceee
Confidence 99999999999999999999987754 7999999999999999999999999998877 4433
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-38 Score=357.39 Aligned_cols=318 Identities=15% Similarity=0.201 Sum_probs=232.1
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 784 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 784 (1102)
++.+..+.....|+++.... ..|...|.+++|+|||++|++++.|. +++||. .
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~ 71 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------S 71 (357)
T ss_dssp --------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------E
T ss_pred EEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------e
Confidence 34445557778888763211 24889999999999999999999853 355542 2
Q ss_pred ceeccCCCccccccc-cCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee----eecCCCCCeeEEEEecCC
Q 001311 785 PQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQD 859 (1102)
Q Consensus 785 ~~~w~~~~~~~~~~~-~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~----~~~~~~~~i~~l~~sp~d 859 (1102)
+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| +
T Consensus 72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d 150 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-D 150 (357)
T ss_dssp EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-S
T ss_pred EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-C
Confidence 344554444322111 111237888999999999987776669999999998876543 3457999999999999 9
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311 860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 938 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 938 (1102)
+++|++|+.||.|++||+.+++++..+.+|...|++++|++++. ++++++.|++|++||+.+++...... ...+
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~-- 225 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS-- 225 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC--
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc--
Confidence 99999999999999999999999999999999999999999875 78999999999999998866432211 1111
Q ss_pred CCCCCcEEEEccCC-cEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCC-cEEEEEeCCCeEEEEEcCCc
Q 001311 939 TAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 939 ~~~~v~~~~~spdg-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
...+.+++|+|++ .+|+++ .|+.|++||+.+++.+..+. +|...|++++|+|++ ++||+|+.|++|+|||+.++
T Consensus 226 -~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 226 -DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp -CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred -cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 2468899999985 677775 78999999999999888776 789999999999987 57999999999999999999
Q ss_pred eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1016 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1016 ~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+++..+ +|... |. +++|+|.|+.+|++++.||+|++|++.+..
T Consensus 303 ~~~~~~--------~H~~~-V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 303 EVFRDL--------SHRDF-VT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEEEC--------CCSSC-EE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred cEeEEC--------CCCCC-EE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 887654 24333 66 899999888999999999999999997654
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=346.86 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=173.8
Q ss_pred ccCCCCC-CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 403 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 403 ~~~~h~~-~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.+.+|.+ .|++++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4778887 999999999999999999999999999998865443334578999999999999999 8999999999999
Q ss_pred EeCCCC--eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe---eeecCCCCeeeEEEEccCCcee
Q 001311 482 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 482 Wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~ 556 (1102)
||+.++ +++..+.+|...|.+++|+ +++++|++|+.|++|++||++..... ..+..|..
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~-------------- 151 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ-------------- 151 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--------------
Confidence 998876 4678899999999999985 46689999999999999999875432 22333333
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 634 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 634 (1102)
.+.+++|+|++++|++++.|+.|++||..++... ..+.+| ...|.+++|+|++++|++++.||+|++|+
T Consensus 152 -------~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 152 -------DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp -------CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -------CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 4555666666678999999999999999887644 455544 55899999999999999999999999998
Q ss_pred ccC
Q 001311 635 TSD 637 (1102)
Q Consensus 635 ~~~ 637 (1102)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 26
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.5e-37 Score=337.85 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=183.8
Q ss_pred ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCce--eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 588999999999999965 8999999999999999975432 223456889999999999999999 89999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
++||+.+++++..+.+|...|.+++|+ +++.+|++|+.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 999999999999999999999999985 5668999999999999999964 55666777777888888877653
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
..+++..+++++.|+.|++||+.+++....+.+|.. .|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 123456799999999999999999998888876644 7999999999999999999999999998765
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.6e-37 Score=338.41 Aligned_cols=289 Identities=19% Similarity=0.265 Sum_probs=244.7
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w 526 (1102)
.++.+|.+.|.+++|+|+++ +|++++.||+|++||+.++..+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence 46889999999999999999 899999999999999999999999999999999999864 55799999999999999
Q ss_pred EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCC
Q 001311 527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG 605 (1102)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 605 (1102)
|+.+++....+..|...|.+++|+|++ ++|++++.|++|++||+.++. ....+.+|.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~- 140 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHE- 140 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS---------------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCC---------------------CEEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence 999988877777777666666665555 579999999999999998874 455666554
Q ss_pred CCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001311 606 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 684 (1102)
Q Consensus 606 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1102)
..|.+++|+| ++.+|++|+.|++|++||+.++..... +.
T Consensus 141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~-~~-------------------------------------- 180 (304)
T 2ynn_A 141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LT-------------------------------------- 180 (304)
T ss_dssp -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE-EE--------------------------------------
T ss_pred -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce-ec--------------------------------------
Confidence 4799999999 689999999999999999765411000 00
Q ss_pred cccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEE
Q 001311 685 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 764 (1102)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~ 764 (1102)
T Consensus 181 -------------------------------------------------------------------------------- 180 (304)
T 2ynn_A 181 -------------------------------------------------------------------------------- 180 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec--CCCeEEEEe-CCeEEEEEcCCCceee
Q 001311 765 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 841 (1102)
Q Consensus 765 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~--d~~~las~s-dg~I~iwd~~~~~~~~ 841 (1102)
.++...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 00334455666654 677899998 9999999999999999
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC--EEEEEcCCCcEEEEEc
Q 001311 842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 919 (1102)
Q Consensus 842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~i~vwd~ 919 (1102)
++.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++. ++++++.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 578887666 888887
Q ss_pred CC
Q 001311 920 DG 921 (1102)
Q Consensus 920 ~~ 921 (1102)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.4e-38 Score=356.93 Aligned_cols=298 Identities=13% Similarity=0.227 Sum_probs=244.1
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999987654 5788999999999999999 89999999999999
Q ss_pred eCCCCe-------eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-----cCCCCeeeEEEEc
Q 001311 483 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS 550 (1102)
Q Consensus 483 d~~~~~-------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s 550 (1102)
|+.+.. ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+ ..|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~-------- 206 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA-------- 206 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS--------
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc--------
Confidence 987542 345688999999999986543 357999999999999999987766544 22333
Q ss_pred cCCceeeeccccCceeEEEEcC-CCCEEEEEeCCCeEEEEECC-CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 628 (1102)
.+.++.+++ ++++|++|+.|+.|++||++ .++.+..+.+|. ..|.+++|+|++++|++++.||
T Consensus 207 -------------~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 207 -------------DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp -------------CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS--SCCCEEEECTTSSEEEEECSSS
T ss_pred -------------CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC--CCeEEEEEecCCCeEEEEcCCC
Confidence 444555544 55789999999999999997 456777777664 4799999999999999999999
Q ss_pred cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccc
Q 001311 629 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 708 (1102)
Q Consensus 629 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 708 (1102)
+|++||+.++ ..+..+..+..
T Consensus 272 ~i~lwd~~~~-~~~~~~~~~~~---------------------------------------------------------- 292 (380)
T 3iz6_a 272 TCRLFDMRTG-HQLQVYNREPD---------------------------------------------------------- 292 (380)
T ss_dssp CEEEEETTTT-EEEEEECCCCS----------------------------------------------------------
T ss_pred eEEEEECCCC-cEEEEeccccc----------------------------------------------------------
Confidence 9999999877 22222211000
Q ss_pred cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceec
Q 001311 709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 788 (1102)
Q Consensus 709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 788 (1102)
.
T Consensus 293 ------------------------------------------~------------------------------------- 293 (380)
T 3iz6_a 293 ------------------------------------------R------------------------------------- 293 (380)
T ss_dssp ------------------------------------------S-------------------------------------
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeee----cCCCCCeeEEEEecCCCcEE
Q 001311 789 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNII 863 (1102)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~----~~~~~~i~~l~~sp~d~~~l 863 (1102)
...+...+.+++|+|+|++|++|+ ||.|++||+.+++.+..+ .+|.+.|++++|+| ++++|
T Consensus 294 -------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 359 (380)
T 3iz6_a 294 -------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSAL 359 (380)
T ss_dssp -------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEE
T ss_pred -------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEE
Confidence 000334578899999999999998 899999999888887776 67999999999999 99999
Q ss_pred EEEeCCCcEEEEEeecce
Q 001311 864 AIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~~~ 881 (1102)
++|+.||.|+||++...+
T Consensus 360 ~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 360 CTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECTTSCEEEEECCSSS
T ss_pred EEeeCCCCEEEEecCCCc
Confidence 999999999999987643
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.6e-38 Score=356.20 Aligned_cols=300 Identities=18% Similarity=0.288 Sum_probs=248.2
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
..+.+|.+.|++++|+|+|++ |++|+.|++|+|||+.+++... .+.+|...|.+++|+|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFAPN 119 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEECTT
T ss_pred ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEECCC
Confidence 335569999999999999996 9999999999999999998776 37789999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe--
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 493 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-- 493 (1102)
|++||+|+.|+.|+|||+.+... ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999999999976421 1122347899999999999998654 6999999999999999999999887
Q ss_pred ---ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 494 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 494 ---~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
.+|...|.+++|++ .++.+|++|+.|++|++||++. ......+.+|...|.+++|+|+
T Consensus 199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~----------------- 260 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD----------------- 260 (380)
T ss_dssp CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT-----------------
T ss_pred ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC-----------------
Confidence 68999999999854 3568999999999999999984 3455556666655555555554
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-----CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
+++|++++.|++|++||+.+++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||..++ +....
T Consensus 261 ----~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~ 335 (380)
T 3iz6_a 261 ----GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLN 335 (380)
T ss_dssp ----SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEE
T ss_pred ----CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEE
Confidence 45899999999999999999999888765432 234889999999999999999999999998766 22222
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311 645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 724 (1102)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 724 (1102)
+..
T Consensus 336 ~~~----------------------------------------------------------------------------- 338 (380)
T 3iz6_a 336 LGT----------------------------------------------------------------------------- 338 (380)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311 725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769 (1102)
Q Consensus 725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~ 769 (1102)
...+|...|.+++|+|+|++|++++.|+.|++|++.
T Consensus 339 ---------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 339 ---------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ---------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ---------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 002378899999999999999999999999999974
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-39 Score=370.66 Aligned_cols=331 Identities=13% Similarity=0.174 Sum_probs=269.2
Q ss_pred CCeEEEEEccCCC-eEEEE----------ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311 409 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 477 (1102)
Q Consensus 409 ~~V~~l~~spdg~-~las~----------~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 477 (1102)
..|.+++|+|+|+ +||+| +.|+.|+|||+.+++...... ...|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-SLQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-CCCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-EEecCCceEEEEECCCCC--eEEEEccCC
Confidence 4688999999997 99999 899999999999876332222 236899999999999999 799999999
Q ss_pred cEEEEeCCC----CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC------Ceeee---cCCCCee
Q 001311 478 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 544 (1102)
Q Consensus 478 ~i~vWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~---~~~~~~v 544 (1102)
.|++||+.+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+.. ....+ ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999988 4588899999999999999654 25799999999999999998865 22221 2334444
Q ss_pred eEEEEccCCceeeeccccCceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEEcCCCC----CCCcCeEEEcCCC-
Q 001311 545 TTMAYSADGTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG- 618 (1102)
Q Consensus 545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~- 618 (1102)
.+++|+|+ +.+|++++.|+.|++||+.+++.+..+..+.. ...+.+++|+|++
T Consensus 169 ---------------------~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 169 ---------------------ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227 (416)
T ss_dssp ---------------------CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred ---------------------eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC
Confidence 44555555 46899999999999999999999988876531 3479999999997
Q ss_pred CEEEEEECCC---cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCC
Q 001311 619 CLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 695 (1102)
Q Consensus 619 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1102)
.++++++.|+ .|++||+.++......+
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-------------------------------------------------- 257 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTL-------------------------------------------------- 257 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCC--------------------------------------------------
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEe--------------------------------------------------
Confidence 6899999998 99999986641111000
Q ss_pred ccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCC
Q 001311 696 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 775 (1102)
Q Consensus 696 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 775 (1102)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEE
Q 001311 776 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFL 853 (1102)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l 853 (1102)
. .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+.+|...|.++
T Consensus 258 -------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~ 311 (416)
T 2pm9_A 258 -------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT 311 (416)
T ss_dssp -------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred -------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence 0 01667788888888 888888888 8999999999999999999999999999
Q ss_pred EEecCCC-cEEEEEeCCCcEEEEEeecceeeeeec-----------------------------------cccccceeEE
Q 001311 854 AFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLA 897 (1102)
Q Consensus 854 ~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~ 897 (1102)
+|+| ++ .+|++++.||.|++||+.+++...... .|...+.+++
T Consensus 312 ~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
T 2pm9_A 312 KFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH 390 (416)
T ss_dssp EECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred EECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence 9999 66 899999999999999998765433221 1677888999
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCC
Q 001311 898 FSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 898 ~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
|+|||++|++++.|++|+||++.+
T Consensus 391 ~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 391 WAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp EETTTEEECBCTTSSCBCCBCCCC
T ss_pred EeeCCeEEEEeCCCCeEEEEEecc
Confidence 999999999999999999999986
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-37 Score=356.72 Aligned_cols=358 Identities=11% Similarity=0.149 Sum_probs=268.5
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeC----CCCee------EEeeeeeeeccCCCCccccccccCCCCCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGVS 410 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1102)
....|.+.|++++|+|+|+.+|++|+.||.|+|||+ .+++. ....... ........+|.+.
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTNQ 110 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CBC
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCCc
Confidence 344577999999999999933999999999999999 88773 2210000 0000012347889
Q ss_pred eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 490 (1102)
Q Consensus 411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~ 490 (1102)
|.+++|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEE
Confidence 99999999999999999999999999 4444443 4788999999999999999 7999999999999999999999
Q ss_pred EEeecCCCC---------------eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311 491 YIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 491 ~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
..+..+... +.+++|++. ..+++++.||.|++||+.+......+..+...+.+++|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--- 258 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT--- 258 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT---
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC---
Confidence 999888777 888888653 46999999999999999988777666666665555555554
Q ss_pred eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
+++|++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++ ++++++.||.|++||+
T Consensus 259 ------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 259 ------------------NKLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp ------------------TTEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred ------------------CCEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 4579999999999999999999988887654 479999999999 9999999999999998
Q ss_pred cCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccc
Q 001311 636 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 715 (1102)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 715 (1102)
.++ ..+..+.
T Consensus 318 ~~~-~~~~~~~--------------------------------------------------------------------- 327 (425)
T 1r5m_A 318 KQN-TLLALSI--------------------------------------------------------------------- 327 (425)
T ss_dssp TTT-EEEEEEE---------------------------------------------------------------------
T ss_pred CCC-cEeEecc---------------------------------------------------------------------
Confidence 776 3222221
Q ss_pred eEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccc
Q 001311 716 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 795 (1102)
Q Consensus 716 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 795 (1102)
.|...|.+++|+|+++++++++.||.|++|++.....
T Consensus 328 ---------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~---------------------- 364 (425)
T 1r5m_A 328 ---------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS---------------------- 364 (425)
T ss_dssp ---------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----------------------
T ss_pred ---------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc----------------------
Confidence 1456788888888888888888888888888632110
Q ss_pred cccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEeCCCcEE
Q 001311 796 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQ 873 (1102)
Q Consensus 796 ~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~ 873 (1102)
.. ..+ ....++. +.......+..+.+|.. .|++++|+| ++++|++++.||.|+
T Consensus 365 ~~------------~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 365 KS------------RSL---------YGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS 419 (425)
T ss_dssp --------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred ce------------eee---------ecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence 00 000 0001222 22233456788888876 999999999 899999999999999
Q ss_pred EEEee
Q 001311 874 IYNVR 878 (1102)
Q Consensus 874 vwd~~ 878 (1102)
+||+.
T Consensus 420 iw~~~ 424 (425)
T 1r5m_A 420 VVAIP 424 (425)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 99975
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=348.35 Aligned_cols=295 Identities=15% Similarity=0.156 Sum_probs=230.4
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcc-ccccccCCCCCCCCeeEEEEec
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
+...|.+++|+|||++|++++ |+++++|+.... +|+..... ..........+...|.+++|++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 778899975221 12111100 0000000011567799999999
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
++. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 964 55666 99999999998876544 458999999999999 999999999999999999999999999999999
Q ss_pred cceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEc
Q 001311 892 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFET 968 (1102)
Q Consensus 892 ~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~-~d~~i~iwd~ 968 (1102)
.|++++|++++ .+|++++.|++|++||+.+++....... ..+ ...+.+++|+|+ +++++++ .|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---cee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999998 4789999999999999998764321111 111 135789999995 5677775 7899999999
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCC-cEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
.+++++..+. +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|... |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999988876 889999999999998 579999999999999999998753 33 45444 66 99999976
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001311 1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
..+|++++.||+|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 6678899999999999997744
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=347.61 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=231.6
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC--------ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
...|...|.+++|||||++|++++ |+++++||.... ...........|...|.+++|++++. |++|+.
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~ 101 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASD 101 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEET
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEEC
Confidence 345778899999999999999888 778888874211 00000111334678899999999864 889999
Q ss_pred CCcEEEEeCCCCeeeEE----eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEcc
Q 001311 476 DKTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 551 (1102)
Q Consensus 476 d~~i~vWd~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 551 (1102)
||+|+|||+.+++.+.. +.+|.+.|++++|+ +++++|++|+.|++|++||+.+++.+..+.+|...|.+++|++
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999999886644 45899999999985 5678999999999999999999888888888888888888887
Q ss_pred CCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcE
Q 001311 552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGI 630 (1102)
Q Consensus 552 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 630 (1102)
++. ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|
T Consensus 180 ~~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 180 HKD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp SCT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 765 468999999999999999999988886555555788999999 56788999999999
Q ss_pred EEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccC
Q 001311 631 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 710 (1102)
Q Consensus 631 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 710 (1102)
++||+.++ +.+..+.
T Consensus 240 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 254 (344)
T 4gqb_B 240 SLVDTKST-SCVLSSA---------------------------------------------------------------- 254 (344)
T ss_dssp EEEESCC---CCEEEE----------------------------------------------------------------
T ss_pred EEEECCCC-cEEEEEc----------------------------------------------------------------
Confidence 99998765 2211111
Q ss_pred CCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccC
Q 001311 711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 790 (1102)
Q Consensus 711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 790 (1102)
T Consensus 255 -------------------------------------------------------------------------------- 254 (344)
T 4gqb_B 255 -------------------------------------------------------------------------------- 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311 791 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 868 (1102)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 868 (1102)
+|...|++++|+|++ ++|++++ |++|+|||+.++++. .+.+|.+.|++++|+|++..+|++|+.
T Consensus 255 -------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 255 -------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp -------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred -------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 166667788888877 4688887 899999999887654 578899999999999955568889999
Q ss_pred CCcEEEEEeecce
Q 001311 869 DSSIQIYNVRVDE 881 (1102)
Q Consensus 869 dg~v~vwd~~~~~ 881 (1102)
||+|++|++.+..
T Consensus 321 D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 321 DHQVVHHVVPTEP 333 (344)
T ss_dssp TSCEEEEECCC--
T ss_pred CCeEEEEECCCCC
Confidence 9999999998654
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=341.59 Aligned_cols=289 Identities=14% Similarity=0.189 Sum_probs=247.1
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|++++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887554 4677999999999999999 89999999999999
Q ss_pred eCCCC------eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCcee
Q 001311 483 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 483 d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 556 (1102)
++... .....+.+|...|.+++|+ +++..|++++.|++|++||+.+++....+..|...|.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98654 3456788899999999985 455799999999999999999988877777777767666665532
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
++++|++++.||.|++||+++++++..+..|.. .|.+++|+|++.+|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 246899999999999999999999998876644 79999999999999999999999999986
Q ss_pred CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311 637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 716 (1102)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 716 (1102)
.+. .+..+.
T Consensus 271 ~~~-~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 ADR-EVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TTE-EEEEEC----------------------------------------------------------------------
T ss_pred CCc-EEEEEc----------------------------------------------------------------------
Confidence 541 111000
Q ss_pred EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311 717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 796 (1102)
Q Consensus 717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1102)
.
T Consensus 280 --------------------------------~----------------------------------------------- 280 (354)
T 2pbi_B 280 --------------------------------K----------------------------------------------- 280 (354)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
..+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|+||
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00233467888999999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred E
Q 001311 876 N 876 (1102)
Q Consensus 876 d 876 (1102)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-36 Score=339.09 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=180.6
Q ss_pred ccCCCCCCeEEEEE-----cc-CCCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEE
Q 001311 403 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 472 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 472 (1102)
.+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 999999999999999999986532 123446889999999999999999 7999
Q ss_pred ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEE
Q 001311 473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 549 (1102)
Q Consensus 473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1102)
|+.|++|++||+++++++..+.+|...|.+++|+ +++.+|++++.|++|++||+.. ...... ..+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999985 4568999999999999999974 322222 256667888888
Q ss_pred ccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311 550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 629 (1102)
Q Consensus 550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 629 (1102)
+|++... ..+.|.+.+|++++.|+.|++||. ..+....+..|. ..|.+++|+|++++|++++.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence 8876421 123455678999999999999994 556666776654 47999999999999999999999
Q ss_pred EEEEEccC
Q 001311 630 IKILATSD 637 (1102)
Q Consensus 630 i~iwd~~~ 637 (1102)
|++||+..
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-37 Score=356.27 Aligned_cols=264 Identities=13% Similarity=0.140 Sum_probs=229.0
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
..+++++|+|+|++ |++|+.|+.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999997 9999999999999998765432 24445 455566889999999999
Q ss_pred ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~ 506 (1102)
+.|+.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887544 4679999999999999999 89999999999999999999999999999999999986
Q ss_pred ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC---CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311 507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 583 (1102)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 583 (1102)
+++.+|++++.||.|++||+++++....+.. +...+.++++.+++...........+..++|+|++++|++++.|
T Consensus 191 --~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 --DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp --TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred --CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 4568999999999999999999888777764 56789999999887766666666788899999999999999999
Q ss_pred CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCCc
Q 001311 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 639 (1102)
|.|++||+.+++.+..+.. .+...|.+++|+|++. +|++++.||.|++||+.++.
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9999999999988877753 3345799999999999 99999999999999998763
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-36 Score=337.46 Aligned_cols=324 Identities=14% Similarity=0.163 Sum_probs=263.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
|.+.|.+++|+|||++ ++++..++.+.+|+........ ...+|.+.|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999996 7777767777777655443332 1457999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEee--ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe--eeEEeecCCCCe
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 500 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~~~h~~~v 500 (1102)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999877554444444 7999999999999999 79999999999999999887 667788999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++|+ +++.++++++.||.|++||+++.+....+..+...+.+++|+ |++++++++
T Consensus 145 ~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~---------------------~~~~~l~~~ 201 (337)
T 1gxr_A 145 YALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---------------------NDGTKLWTG 201 (337)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---------------------TTSSEEEEE
T ss_pred EEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC---------------------CCCCEEEEE
Confidence 999985 466899999999999999999877666666555555555554 455679999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
+.||.|++||+.+++.+..+... ..+.+++|+|++++|++++.+|.|++||+.++. ... +
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~-~--------------- 261 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ-L--------------- 261 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-E---------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-E---------------
Confidence 99999999999999988887633 358999999999999999999999999976541 000 0
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
T Consensus 262 -------------------------------------------------------------------------------- 261 (337)
T 1gxr_A 262 -------------------------------------------------------------------------------- 261 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 820 (1102)
..|...+.+++|+|++++
T Consensus 262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence 015566778888888888
Q ss_pred EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 821 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
|++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88887 788888888887776544 3788899999999 89999999999999999974
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-35 Score=328.46 Aligned_cols=289 Identities=18% Similarity=0.263 Sum_probs=245.7
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|++++|+|+|++ |++|+.||.|+||++.+++... .+.+|...|.+++|+|+++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 78 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSN 78 (312)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSS
T ss_pred EcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCC
Confidence 4569999999999999995 9999999999999999887765 3789999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
+|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+++++++..+.+|...|.
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence 99999999999999999987665 5789999999999999999 799999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
+++|+ +++.+|++++.||.|++||+.+......+.. .....+..++|+|++++|++++
T Consensus 154 ~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 154 AVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLID--------------------DDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECC--------------------SSCCCEEEEEECTTSSEEEEEE
T ss_pred EEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEec--------------------cCCCceEEEEECCCCCEEEEEc
Confidence 99985 5668999999999999999987665443321 1123456667777778899999
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
.|+.|++||+.+++.+..+..+..........++ +++.+|++++.||.|++||+.++ +.+..+.
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~-------------- 276 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQ-------------- 276 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEEC--------------
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhh--------------
Confidence 9999999999999999988876554333334444 57899999999999999998876 3333332
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
+|..
T Consensus 277 ----------------------------------------------------------------------------~h~~ 280 (312)
T 4ery_A 277 ----------------------------------------------------------------------------GHTD 280 (312)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------ccCC
Confidence 2667
Q ss_pred ceEEEEEccCCceEEEee--cCceEEeeec
Q 001311 741 KISRLIFTNSGNAILALA--SNAIHLLWKW 768 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~--~dg~i~iw~~ 768 (1102)
.|.+++|+|++..+++++ .|+.|++|+.
T Consensus 281 ~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 281 VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999887 5899999985
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-38 Score=363.95 Aligned_cols=373 Identities=15% Similarity=0.185 Sum_probs=269.1
Q ss_pred ccCCCCeeEEEEecCCCeEEEEE----------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 412 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg----------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1102)
+.+...|.+++|+|+|+.++++| +.|+.|+|||+.+++.... .....|...|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~ 71 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFN 71 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEE
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceE
Confidence 34556899999999998679999 8899999999988753210 01346889999
Q ss_pred EEEEccCCCeEEEEECCCeEEEEEccCCce-eeeEEEeeccccCEEEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCe--
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA-- 488 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~vWd~~~~~-- 488 (1102)
+++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence 999999999999999999999999987211 1133357899999999999998 66 79999999999999999887
Q ss_pred ----eeE---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 489 ----KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 489 ----~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
... .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+... . .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~-~~ 213 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--------------S-GI 213 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--------------S-CC
T ss_pred cccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccc--------------c-cc
Confidence 333 346799999999996542 479999999999999999987766665554100 0 00
Q ss_pred cCceeEEEEcCCC-CEEEEEeCCC---eEEEEECCCc-ceEEEEc-CCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEE
Q 001311 562 KRSLGVVQFDTTK-NRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILA 634 (1102)
Q Consensus 562 ~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd 634 (1102)
...+.+++|+|++ .++++++.|+ .|++||++++ ..+..+. .+ ...|.+++|+| ++.+|++++.||.|++||
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 1244445555554 5799999998 9999999986 4555555 44 44799999999 999999999999999999
Q ss_pred ccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCcc
Q 001311 635 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 714 (1102)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 714 (1102)
+.++ +.+..+.
T Consensus 292 ~~~~-~~~~~~~-------------------------------------------------------------------- 302 (416)
T 2pm9_A 292 PESA-EQLSQFP-------------------------------------------------------------------- 302 (416)
T ss_dssp SSSC-CEEEEEE--------------------------------------------------------------------
T ss_pred CCCC-ccceeec--------------------------------------------------------------------
Confidence 8876 3333322
Q ss_pred ceEecccCCCCCccccccCCCcccccceEEEEEccCC-ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311 715 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 793 (1102)
Q Consensus 715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1102)
.|...|.+++|+|++ ..+++++.|+.|++|++...
T Consensus 303 ----------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~---------------------- 338 (416)
T 2pm9_A 303 ----------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL---------------------- 338 (416)
T ss_dssp ----------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC----------------------
T ss_pred ----------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC----------------------
Confidence 255678889999999 88999999999999987321
Q ss_pred cccccccCCCCCCC-----CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311 794 IMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 868 (1102)
Q Consensus 794 ~~~~~~~~~~~~~~-----~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 868 (1102)
... .. ... ......+.+.+..++.+.. +. .... .....|...+.+++|+| +|++||+|+.
T Consensus 339 ~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la~~~~ 403 (416)
T 2pm9_A 339 TNT----LD--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQITPD 403 (416)
T ss_dssp CCS----SC--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEECBCTT
T ss_pred CCC----cc--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEEEeCC
Confidence 100 00 100 0011111122222221110 10 0111 22334677888999999 9999999999
Q ss_pred CCcEEEEEeecc
Q 001311 869 DSSIQIYNVRVD 880 (1102)
Q Consensus 869 dg~v~vwd~~~~ 880 (1102)
||.|+||++.+.
T Consensus 404 d~~v~~w~~~~~ 415 (416)
T 2pm9_A 404 GKGVSITNPKIS 415 (416)
T ss_dssp SSCBCCBCCCCC
T ss_pred CCeEEEEEeccC
Confidence 999999998764
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=336.61 Aligned_cols=298 Identities=16% Similarity=0.209 Sum_probs=238.5
Q ss_pred cccc-ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 737 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 737 ~~~~-~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
+|.. .|..++|+|+|++|++++.|+.|++|++.... .........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----------------------WICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----------------------EEEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----------------------ceeeeeeccccCCcEEEEEEC
Confidence 3666 89999999999999999999999999974321 000000112489999999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeeeeccc
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 889 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h 889 (1102)
|++++|++++ |++|++|++.+. +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998866 45778999999999999999 9999999999999999999875 456778899
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 968 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~ 968 (1102)
...|.+++|+|++++|++++.|++|++||+..++. .......+|. ..|.+++|+|+|++|++ +.|+.|++|+.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999887542 2233445555 48999999999999999 48999999996
Q ss_pred CCc---------------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee----EEEeCCCcccCC
Q 001311 969 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL----RCRINPSAYLPA 1029 (1102)
Q Consensus 969 ~~~---------------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~----~~~~~~~~~~~~ 1029 (1102)
... +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+.. ...+. .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~ 300 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ 300 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc
Confidence 322 2233332 24889999999999999999999999999999876531 11110 01123
Q ss_pred CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+|... |. +++|+|+++.+|++|+.||+|++|++.+.+
T Consensus 301 ~h~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 44333 66 999999655799999999999999998877
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-35 Score=325.41 Aligned_cols=291 Identities=22% Similarity=0.406 Sum_probs=247.3
Q ss_pred EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525 (1102)
Q Consensus 446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~ 525 (1102)
..++.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++....+.+|...|.+++|+ +++++|++++.|+.|++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSNLLVSASDDKTLKI 91 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEE
T ss_pred EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc--CCCCEEEEECCCCEEEE
Confidence 446889999999999999999 89999999999999999999999999999999999985 56689999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 605 (1102)
||+.+.+....+..|...|.++.| +|++++|++++.|+.|++||+.+++.+..+..+..
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNF---------------------NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE---------------------CSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence 999988777666666555555554 45556899999999999999999999988876644
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311 606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 685 (1102)
Q Consensus 606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1102)
.|.+++|+|++++|++++.||.|++||+.++. .+..+.
T Consensus 151 --~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~--------------------------------------- 188 (312)
T 4ery_A 151 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLI--------------------------------------- 188 (312)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEEC---------------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEEe---------------------------------------
Confidence 79999999999999999999999999986651 111000
Q ss_pred ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311 686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765 (1102)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 765 (1102)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T 4ery_A 189 -------------------------------------------------------------------------------- 188 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311 766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 844 (1102)
Q Consensus 766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~ 844 (1102)
..+...+..++|+|++++|++++ |+.|++||+.+++.+..+.
T Consensus 189 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 189 -------------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp -------------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred -------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 00345577788889999999888 8999999999999888888
Q ss_pred CCCCCee--EEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcC
Q 001311 845 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD 920 (1102)
Q Consensus 845 ~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~ 920 (1102)
+|...+. ...+++.++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++ .|++|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8876543 3345544889999999999999999999999999999999999999999999999987 69999999864
No 42
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.2e-34 Score=373.59 Aligned_cols=526 Identities=11% Similarity=0.059 Sum_probs=371.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
+...+.+.+|||+ + |+..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4 555544 799999998876543 678999999999999999999
Q ss_pred EEECC------CeEEEEEccCCceeeeEEEeeccccCE-------EEEEEcCCCCeeEEEEecCC------CcEEEEeCC
Q 001311 425 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 485 (1102)
Q Consensus 425 s~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~~~d------~~i~vWd~~ 485 (1102)
+++.+ ..|++||+.+++.. .+..|...+ .+++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 37999999987632 477888888 9999999998 67777754 458888887
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC------------CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1102)
+++... +..+. ...++|+ + | ++++++. +...++|..........+..+...+
T Consensus 143 ~g~~~~-l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v--------- 206 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV--------- 206 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC---------
T ss_pred CCCeEE-ecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc---------
Confidence 777543 33332 3345665 4 5 8888763 2345566433323333333444444
Q ss_pred ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
..+.|+++ ..+++++.++.+++|.+.. +.....+..+. .+..++|+|||++|+.+. ++.|++
T Consensus 207 ------------~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 207 ------------SSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp ------------EEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred ------------cceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 44455544 3466677889999998653 44445554443 366789999999998874 899999
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
|+.... . +..+.++... .
T Consensus 270 ~d~~~~-~-l~~l~~~~~~------------------------------------------------------------~ 287 (1045)
T 1k32_A 270 FNPDTE-K-IEKIEIGDLE------------------------------------------------------------S 287 (1045)
T ss_dssp ECTTTC-C-EEECCCCCCC------------------------------------------------------------B
T ss_pred ecCCce-E-eeeeccCccc------------------------------------------------------------c
Confidence 998322 1 2122111000 0
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEc-cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 791 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 791 (1102)
.. .. ..+...+..++|+ |||+.++.++ ++.+.+|++.
T Consensus 288 ~~--------------~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 288 PE--------------DR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp CC--------------SE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred cc--------------cc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 00 00 1145678899999 9999888877 7788888752
Q ss_pred CccccccccCCCCCCC-CeeEEEEecCCCeEEEEe-CCeEE-EEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311 792 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 868 (1102)
Q Consensus 792 ~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~las~s-dg~I~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 868 (1102)
.+.... +. .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++.. .+.+|...+..++|+| |+++|++++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222211 11 1555 78999999 999999988 67788 8999876654 4447888999999999 9999999999
Q ss_pred CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC----------cEEEEEcCCCcccceeeeecCCCCCC
Q 001311 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 938 (1102)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~ 938 (1102)
++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++||+.+++. . ....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----~-~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----F-AATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----E-ECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-----E-EeeCCC-
Confidence 99999999999988887778999999999999999999887654 899999988542 1 122222
Q ss_pred CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE-----------------------------------------eee
Q 001311 939 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-----------------------------------------VKQ 976 (1102)
Q Consensus 939 ~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~-----------------------------------------~~~ 976 (1102)
..+..++|+|||++|+.+ .++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 256789999999999885 555555565432211 001
Q ss_pred eccCCCCCCeeEEEEcCCCcEEEE-------------EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311 977 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus 977 ~~~~~h~~~v~~l~~spd~~~l~s-------------~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
.....|.+.+..++++|||+++++ ...+..|++||+.+++..... .+ +. ++.|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 111245678999999999998875 123567899999998754322 11 33 7899
Q ss_pred cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+| ||+.|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 68999988766 89999998876
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-37 Score=357.05 Aligned_cols=356 Identities=10% Similarity=0.047 Sum_probs=234.2
Q ss_pred ccceeeccCCCCeeEEEEecCC---------CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 407 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg---------~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 407 (1102)
.+...++.+.+.|.+|+|+|++ + +||+|+.++..
T Consensus 124 ~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~------------------------------------ 166 (524)
T 2j04_B 124 KRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD------------------------------------ 166 (524)
T ss_dssp CSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC---------------------------------------
T ss_pred CcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC------------------------------------
Confidence 4445566789999999999997 5 58888755310
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceee-eEEEeeccccCEEEEEEcCC------CCeeEEEEecCCCcEE
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTIK 480 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~~~d~~i~ 480 (1102)
-..+|++++||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +|++++.||+|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 0136899999999999999999999876432 12346778899999999997 45 799999999999
Q ss_pred EEeCCCCee-----------eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEE
Q 001311 481 VWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMA 548 (1102)
Q Consensus 481 vWd~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~ 548 (1102)
|||+.++.. ...+.+|...|.+++|++ + ..|++|+.||+|++||++++.. ...+..|...|.+++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 347889999999999964 2 4899999999999999987543 334555665555552
Q ss_pred EccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
+ .+++++ ++|++++.|++|++||++++++...+..+.....|.+++|+|+++.+++++.|
T Consensus 316 ~-------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 316 T-------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp E-------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred E-------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC
Confidence 1 234444 57999999999999999998877666554332347899999999999999999
Q ss_pred CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc
Q 001311 628 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 707 (1102)
Q Consensus 628 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 707 (1102)
++|++||++++ .....+.
T Consensus 377 ~tv~lwd~~~~-~~~~~l~------------------------------------------------------------- 394 (524)
T 2j04_B 377 SSLRAVPSRAA-FAVHPLV------------------------------------------------------------- 394 (524)
T ss_dssp SEEEEEETTCT-TCCEEEE-------------------------------------------------------------
T ss_pred CcEEEEECccc-ccceeee-------------------------------------------------------------
Confidence 99999998765 2211111
Q ss_pred ccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccccee
Q 001311 708 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 787 (1102)
Q Consensus 708 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 787 (1102)
+|...|.+++|+|+|+.|++++.|++|++|+
T Consensus 395 -----------------------------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd-------------------- 425 (524)
T 2j04_B 395 -----------------------------SRETTITAIGVSRLHPMVLAGSADGSLIITN-------------------- 425 (524)
T ss_dssp -----------------------------ECSSCEEEEECCSSCCBCEEEETTTEEECCB--------------------
T ss_pred -----------------------------cCCCceEEEEeCCCCCeEEEEECCCEEEEEe--------------------
Confidence 1445555556666555555555555555554
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecC-----CCCCeeEEEEecCCCcE
Q 001311 788 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQDNNI 862 (1102)
Q Consensus 788 w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~ 862 (1102)
+... .+..+.. +...+..++|+| ++..
T Consensus 426 ----------------------------------------------~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~ 457 (524)
T 2j04_B 426 ----------------------------------------------AARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDK 457 (524)
T ss_dssp ----------------------------------------------SCSS-TTTCC------CCCCEEEECBCCS-SSCE
T ss_pred ----------------------------------------------chHh-hccccccCccceeeeEEEEeccCC-CCCe
Confidence 3221 1111100 112356788999 6765
Q ss_pred EEEEeCCCcEEEEEee-cceeeeeeccccccceeEEEecCCC---EEEEEcCCCcEEEEEcCC
Q 001311 863 IAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 863 lasg~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~ 921 (1102)
+. ...+ +.+|+.. ++.++..+.+|...|.+|+|+|++. +||+|+.||+|+||++..
T Consensus 458 ~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 458 YR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 43 2222 3344433 4677888999999999999999954 999999999999999876
No 44
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-35 Score=335.75 Aligned_cols=274 Identities=14% Similarity=0.239 Sum_probs=207.3
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
+...++|.+.|+|++|||||++ ||+|+ |++++||++.+++.+.......-.. .............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECC
Confidence 4456689999999999999996 78876 6899999999998765421100000 0000000011123445699999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||++++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999987554 5889999999999999999 79999999999999999999988887 567
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.+.+++|++ .++.+|++|+.|+.|++||++++.....+.... ....+ +...+.+++|+|++++|+
T Consensus 208 ~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 208 GVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp CEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEEE
T ss_pred CcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEEE
Confidence 788898864 366899999999999999998866554432110 00011 223566777777778999
Q ss_pred EEeCCCeEEEEECCCcc------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 579 AAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.|+.|++||+.+.. +...+.+| ...|.+++|+|++.+|++++.||.|++||..++
T Consensus 273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999997632 34455544 447999999999999999999999999998877
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-35 Score=333.04 Aligned_cols=320 Identities=12% Similarity=0.150 Sum_probs=258.9
Q ss_pred CCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 407 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 407 h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
|.+.|.+++|+|||++++++..++.+.+|+....... ....+|.+.|++++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---EEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc---ceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 4568999999999999999988887777755443222 23457999999999999999 788888 99999999988
Q ss_pred Cee---eEEee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeec
Q 001311 487 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 487 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
++. +..+. +|...|.+++|+ +++++|++++.||.|++||+.+.+. ...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----------------- 142 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP----------------- 142 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----------------
T ss_pred CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-----------------
Confidence 753 33443 799999999985 4668999999999999999987652 223333333
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
.+.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++++|++++.||.|++||+.++.
T Consensus 143 ----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 143 ----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 45555666666789999999999999999999998887654 479999999999999999999999999986651
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
....+
T Consensus 217 -~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 217 -QLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp -EEEEE--------------------------------------------------------------------------
T ss_pred -eEeee--------------------------------------------------------------------------
Confidence 11100
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0334567778888888888887 78888888887664 46778999999999999 89999999999999999999
Q ss_pred cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
+++.+.. ..|...|.+++|+|++++|++++.||.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887754 458889999999999999999999999999996
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-35 Score=342.73 Aligned_cols=346 Identities=12% Similarity=0.102 Sum_probs=260.7
Q ss_pred CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 488 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~ 488 (1102)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999998876543 24445 4555667899999 79999999999999999999
Q ss_pred eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311 489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568 (1102)
Q Consensus 489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 568 (1102)
.+..+.+|...|.+++|+ +++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++
T Consensus 131 ~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--------------- 193 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG--------------- 193 (420)
T ss_dssp EEEETTSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------
T ss_pred eeeecccccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------
Confidence 999999999999999985 456899999999999999999888777777776666666665555
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
++|++++.|+.|++||+.+++.+..+..+. +...+.++++.+++... ++..... .
T Consensus 194 ------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~-------~- 249 (420)
T 3vl1_A 194 ------RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS-------K- 249 (420)
T ss_dssp ------TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC-------C-
T ss_pred ------CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC-------c-
Confidence 579999999999999999999998887542 23355566655432211 0011111 0
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
T Consensus 250 -------------------------------------------------------------------------------- 249 (420)
T 3vl1_A 250 -------------------------------------------------------------------------------- 249 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 01123455555566666666666665421 111111111 2677
Q ss_pred CeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCce-eeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---
Q 001311 808 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 880 (1102)
Q Consensus 808 ~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--- 880 (1102)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++||+...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 899999999998 889888 89999999998754 666766 5667788755 4 6789999999999999999863
Q ss_pred ------eeeeeeccccccceeEEEecCCC---EEEEEcCCCcEEEEEcCC
Q 001311 881 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 881 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~ 921 (1102)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234567889999999999999 788888899999999864
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-35 Score=325.76 Aligned_cols=252 Identities=17% Similarity=0.241 Sum_probs=196.2
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccc-cCCCCCCeEEEEEc
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAAL-VKDPGVSVNRVIWS 417 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s 417 (1102)
.+.+|.+.|++++|+|+ +||+|+.|++|+|||+.++. .... + ..+|.+.|.+++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~------------------~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV------------------LDETAHKKAIRSVAWR 67 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE------------------ECTTCCCSCEEEEEEC
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE------------------EecCCccCCEEEEEEC
Confidence 34569999999999998 59999999999999998753 2221 1 23499999999999
Q ss_pred cCCCeEEEEECCCeEEEEEccCCc----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC----Cee
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAK 489 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~----~~~ 489 (1102)
|++++||+|+.|++|+|||+.... .......+.+|.+.|.+++|+|+++ +|++|+.|++|++||+.. .++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~ 145 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYEC 145 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEE
Confidence 999999999999999999996432 1233446889999999999999999 899999999999999943 256
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
+..+.+|...|.+++|++ ++.+|++++.|++|++||.... .....+.+|...|.+++|+|++.
T Consensus 146 ~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------------- 210 (330)
T 2hes_X 146 ISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG------------- 210 (330)
T ss_dssp EEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS-------------
T ss_pred EEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC-------------
Confidence 788999999999999864 5689999999999999998765 34455666666666666665521
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCc--------ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 568 VQFDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.+|++++.|++|++||+..+ .+...+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 ------~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 ------VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ------SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ------eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 357999999999999998764 23333332 134579999999765 8999999999999997655
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.6e-35 Score=340.94 Aligned_cols=341 Identities=17% Similarity=0.299 Sum_probs=264.5
Q ss_pred ccCCCCCCe-EEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 403 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 403 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.+.+|.+.| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898885 55555 67899999999999999999988655 578999999999999887 4999999999999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce-eeecc
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-TYQGF 560 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~~~~ 560 (1102)
||+.+++++..+.+|...|.+++|.+.+++.++++++.||.|++||+.+............ ...+...+++.. .....
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665433222111 112222222221 11111
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 640 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 640 (1102)
........+++++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 11222334457788999999999999999999999999987664 47999999999999999999999999998766 2
Q ss_pred ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311 641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 720 (1102)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 720 (1102)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 222111
Q ss_pred cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311 721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 800 (1102)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1102)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
+|...|.+++++ ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 155556666665 46777777 7888888888776655554 666788899999 899999998 89999999999
Q ss_pred ceeeee-eccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311 880 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 880 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd 918 (1102)
++.+.. +.+|...|++++|+ ++.++++++.|+.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 998876 67899999999997 445556666777665553
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-34 Score=323.19 Aligned_cols=211 Identities=19% Similarity=0.295 Sum_probs=178.9
Q ss_pred ccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCcee--eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 403 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
++.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876532 23456889999999999999999 89999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeee
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
++|+...+........+...+..+.+ .+++.+|++++.|+.+++||+....... ....+...+..++|++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEE--eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 99999999999988888888888776 4556799999999999999987644332 3344555666666665543
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
..++++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 2467889999999999999999999888664 47999999999999999999999999998765
No 50
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-35 Score=332.21 Aligned_cols=304 Identities=16% Similarity=0.277 Sum_probs=236.3
Q ss_pred eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC------------------CeEEEeeeecCCc
Q 001311 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA------------------PVYSVCPHHKENI 511 (1102)
Q Consensus 450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~------------------~v~~v~~~~~~~~ 511 (1102)
.+|.+.|.+++|+|||+ +|++|+ ++.+++|++.+++.+..+.+|.. .|.+++|+ +++
T Consensus 61 ~~h~~~V~~v~fspdg~--~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~dg 135 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDG 135 (393)
T ss_dssp EECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTS
T ss_pred cCCCCEEEEEEECCCCC--EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--CCC
Confidence 36999999999999999 788876 68999999999999988876542 38889884 567
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 591 (1102)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 591 (1102)
.+|++|+.|+.|++||+.+.+....+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------------------~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---------------------DKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---------------------CEEEEecCCCcEEEEEC
Confidence 899999999999999999877766666666666665555554 57999999999999999
Q ss_pred CCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhh
Q 001311 592 DSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 670 (1102)
Q Consensus 592 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1102)
.+++....+..+. .+.+++|+| ++++|++++.||.|++||+.++ ..+..+.....
T Consensus 195 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~-------------------- 250 (393)
T 1erj_A 195 RTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENE-------------------- 250 (393)
T ss_dssp TTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------------------------
T ss_pred CCCeeEEEEEcCC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeeccccc--------------------
Confidence 9999888876443 488999999 9999999999999999998876 33222210000
Q ss_pred HhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccC
Q 001311 671 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 750 (1102)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 750 (1102)
...+|...|.+++|+|+
T Consensus 251 ---------------------------------------------------------------~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 251 ---------------------------------------------------------------SGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp -----------------------------------------------------------------CCCSSCEEEEEECTT
T ss_pred ---------------------------------------------------------------CCCCCCCCEEEEEECCC
Confidence 00236667777777777
Q ss_pred CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEE
Q 001311 751 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS 830 (1102)
Q Consensus 751 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~ 830 (1102)
|+.|++++.|+.|++||+... .. ....
T Consensus 268 g~~l~s~s~d~~v~~wd~~~~----------------------~~-------------~~~~------------------ 294 (393)
T 1erj_A 268 GQSVVSGSLDRSVKLWNLQNA----------------------NN-------------KSDS------------------ 294 (393)
T ss_dssp SSEEEEEETTSEEEEEEC--------------------------------------------------------------
T ss_pred CCEEEEEeCCCEEEEEECCCC----------------------CC-------------cccc------------------
Confidence 777777777777777775210 00 0000
Q ss_pred EEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec------CCCE
Q 001311 831 LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNV 904 (1102)
Q Consensus 831 iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~ 904 (1102)
-....+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++
T Consensus 295 -~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 295 -KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred -cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence 00012345566778999999999999 899999999999999999999999999999999999999986 6889
Q ss_pred EEEEcCCCcEEEEEcCC
Q 001311 905 LVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 905 l~s~s~Dg~i~vwd~~~ 921 (1102)
|++|+.|++|+||++..
T Consensus 373 l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 373 FATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred EEEECCCCcEEECcccc
Confidence 99999999999999865
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.9e-35 Score=327.03 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=221.8
Q ss_pred eEEEeeccccCEEEEEE-----cC-CCCeeEEEEecCCCcEEEEeCCCC-------eeeEEeecCCCCeEEEeeeecCCc
Q 001311 445 QHLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENI 511 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~-----s~-d~~~~~l~s~~~d~~i~vWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~ 511 (1102)
....+.+|.+.|++++| ++ |++ +|++|+.|++|++||+.++ .+...+.+|...|.+++|+ +++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~ 88 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QEN 88 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SST
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCC
Confidence 34468899999999999 76 787 8999999999999998753 4567889999999999985 556
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 591 (1102)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 591 (1102)
.++++++.|++|++||++++.....+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---------------------~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---------------------RQILSAGAEREIKLWNI 147 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---------------------TEEEEEETTSCEEEEES
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---------------------CEEEEEcCCCEEEEEec
Confidence 899999999999999999887777777776666666655555 57999999999999999
Q ss_pred CCcceEEEEcCCCCCCCcCeEEEcCCC----------CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311 592 DSVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 661 (1102)
Q Consensus 592 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1102)
.............+...|.+++|+|++ .+|++++.||.|++||.. . ....
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~------------------ 207 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRY------------------ 207 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEE------------------
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeE------------------
Confidence 744333322223445578899999876 455555555555555521 1 0000
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311 662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 741 (1102)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1102)
T Consensus 208 -------------------------------------------------------------------------------- 207 (343)
T 2xzm_R 208 -------------------------------------------------------------------------------- 207 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311 742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 821 (1102)
Q Consensus 742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l 821 (1102)
.+. +|...|.+++|+|++++|
T Consensus 208 ---------------------------------------------------------~~~--~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 208 ---------------------------------------------------------TFK--AHESNVNHLSISPNGKYI 228 (343)
T ss_dssp ---------------------------------------------------------EEE--CCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------EEc--CccccceEEEECCCCCEE
Confidence 000 167778888888888888
Q ss_pred EEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee--eec----------
Q 001311 822 MSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK---------- 887 (1102)
Q Consensus 822 as~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~---------- 887 (1102)
++++ |+.|++||+.. ......+. +...|.+++|+| ++.++++| .|+.|++||+.+++... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 8888 88888888843 33334443 455699999999 88888755 57889999998765443 333
Q ss_pred -cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311 888 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 922 (1102)
Q Consensus 888 -~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 922 (1102)
+|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 68889999999999999999999999999998764
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=348.51 Aligned_cols=373 Identities=11% Similarity=0.140 Sum_probs=268.8
Q ss_pred EEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEEEECCCe
Q 001311 353 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI 431 (1102)
Q Consensus 353 ~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~ 431 (1102)
.|+|+++. +++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 36777775 55544 3874 4555543 2389999999999999 9999999999999
Q ss_pred EEEEEccC---CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCeeeEEeec----------
Q 001311 432 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG---------- 495 (1102)
Q Consensus 432 v~vwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~---~~~~~~~~~~---------- 495 (1102)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||+. +++.+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 99999987 5433222233 5999999999999999 79999999999999995 6655544432
Q ss_pred --CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--CCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 496 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 496 --h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
+...+.++.+...+++.+|++++.||.|++||+++.+....+.. |.. .+.+++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~---------------------~v~~~~~s 223 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG---------------------AVSSICID 223 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC---------------------CEEEEEEC
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC---------------------ceEEEEEC
Confidence 45566666665667889999999999999999998777665554 334 45555555
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc----CCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
|++++|++++.||.|++||+++++++..+.... ...|.+++|+ +++.+|++++.||.|++||+.++ +....+.+
T Consensus 224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 301 (437)
T 3gre_A 224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN 301 (437)
T ss_dssp TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence 666789999999999999999999988886322 2368899655 56889999999999999999888 55555544
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
|...
T Consensus 302 ~~~~---------------------------------------------------------------------------- 305 (437)
T 3gre_A 302 SDEQ---------------------------------------------------------------------------- 305 (437)
T ss_dssp SSSC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3321
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
+..+.|+|+++.+ .+.. +.+..|..
T Consensus 306 --------------~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~ 330 (437)
T 3gre_A 306 --------------PSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLN 330 (437)
T ss_dssp --------------CCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGG
T ss_pred --------------Cccceeccccccc----ccce-------------------------------------ecccccCC
Confidence 1122233333221 0000 11112778
Q ss_pred CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
.|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....+++ +..+++.. |+...+...
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~ 400 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV 400 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence 89999999 888999998 99999999999999999888643 455666666 55444433 333344455
Q ss_pred eeeccccccceeEEEecC--CCEEEEEcCCCcEEEEE
Q 001311 884 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 918 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd 918 (1102)
..+..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666779999999999998 78999999999999995
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-34 Score=336.08 Aligned_cols=317 Identities=19% Similarity=0.311 Sum_probs=267.9
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 47789987643 356679999999999999999999988665 578999999999997 44 79999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
|+.+++++..+.+|...|.++.|+ +..+++|+.||.|++||+.+++....+..+...+.++.+
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~------------- 247 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------------- 247 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-------------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-------------
Confidence 999999999999999999999873 258999999999999999988877777777666666655
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
+++++++++.||.|++||+.+++.+..+..+. ..|.++.| ++.++++++.||.|++||+.++ +.+
T Consensus 248 ----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 248 ----------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ----------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ----------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 23469999999999999999999999887664 47888888 8899999999999999998766 221
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 03444555554 456888888 89999999999999888876 78889999995 4799999999999999999
Q ss_pred cceeeeee-----ccccccceeEEEecCCCEEEEEcCCCc----EEEEEcCC
Q 001311 879 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 921 (1102)
Q Consensus 879 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~ 921 (1102)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988887 578899999999999999999999998 99999976
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6e-34 Score=331.89 Aligned_cols=320 Identities=15% Similarity=0.272 Sum_probs=265.7
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
.+.+|.+.|.. +++++|++ +++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+ +
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--T
T ss_pred EecccCCCcEE-EEEEcCCE-EEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--C
Confidence 35568887533 35566885 9999999999999999998876 378999999999997 6
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 799999999999999999987654 578999999999995 45 69999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.++++ ++.++++|+.||.|++||+++......+..+...+.++.+ ++.+++++
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~~ 295 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-----------------------DGIHVVSG 295 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-----------------------CSSEEEEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-----------------------CCCEEEEE
Confidence 99987 4578999999999999999988777777777666666655 33579999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
+.|+.|++||+.+++.+..+..+.. .+.++.+ ++.+|++++.||.|++||+.++ +.+..+.++
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------ 358 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------ 358 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence 9999999999999999998876643 5655555 6779999999999999998766 222211100
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 820 (1102)
..|...|.+++++ +++
T Consensus 359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence 0155667777774 578
Q ss_pred EEEEe-CCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCcEEEEEeCCCc----EEEEEeec
Q 001311 821 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 879 (1102)
Q Consensus 821 las~s-dg~I~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~ 879 (1102)
+++++ ||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.++|+|+.||. |.|||+..
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 88888 899999999999888877 46788999999999 9999999999998 99999874
No 55
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.1e-33 Score=364.36 Aligned_cols=493 Identities=13% Similarity=0.072 Sum_probs=355.0
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEec------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 410 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1102)
.....+..|...|.+++|||||++ ||.++. +..|.+||+.+++.. .+..|...
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~ 101 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK 101 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence 445666779999999999999997 555433 247999999988643 26778888
Q ss_pred e-------EEEEEccCCCeEEEEECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--
Q 001311 411 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-- 475 (1102)
Q Consensus 411 V-------~~l~~spdg~~las~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-- 475 (1102)
+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~ 171 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF 171 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence 8 999999999977777754 458888888876432 3333 345678999 6 3666542
Q ss_pred ----------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCee
Q 001311 476 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWC 544 (1102)
Q Consensus 476 ----------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v 544 (1102)
+...++|....+.....+.+|...+.++.|+ ++ .++++++.|+.+.+|.++.. .....+..+. .+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s--~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~ 247 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY 247 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe--CC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence 3456677544444556668999999999985 44 57788888999999987642 2233332222 22
Q ss_pred eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC---------CCCCcCeEEEc
Q 001311 545 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN 615 (1102)
Q Consensus 545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s 615 (1102)
.. .+|+|+|++++.+ .++.|++||+.... +..+..+. +...+.+++|+
T Consensus 248 ~~---------------------~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S 304 (1045)
T 1k32_A 248 YP---------------------RHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFS 304 (1045)
T ss_dssp CE---------------------EEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred ce---------------------eeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeec
Confidence 33 3445555566666 48899999995443 44444321 11258899999
Q ss_pred -CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC
Q 001311 616 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 694 (1102)
Q Consensus 616 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1102)
|||++|++++ ++.|++|+..++. ... +.
T Consensus 305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------------------------------------ 333 (1045)
T 1k32_A 305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------------------------------------ 333 (1045)
T ss_dssp ECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS------------------------------------------------
T ss_pred CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc------------------------------------------------
Confidence 9999999888 7899999876551 111 10
Q ss_pred CccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc-ceEEEEEccCCceEEEeecCceEE-eeeccccc
Q 001311 695 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE 772 (1102)
Q Consensus 695 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~-iw~~~~~~ 772 (1102)
.+.. .+..++|+ ||+.++.++.++.+. +|++.
T Consensus 334 ------------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~--- 367 (1045)
T 1k32_A 334 ------------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR--- 367 (1045)
T ss_dssp ------------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT---
T ss_pred ------------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC---
Confidence 1333 67889999 999999888877666 66652
Q ss_pred cCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001311 773 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 851 (1102)
Q Consensus 773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~ 851 (1102)
++.... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.
T Consensus 368 -------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 368 -------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 222221 11 2677899999999999999998 78999999999998888878999999
Q ss_pred EEEEecCCCcEEEEEeCCC----------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 852 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
+++|+| |+++|++++.++ .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 99999999887 677888888899999999999999999888888887543
Q ss_pred Ccccce---ee--eec-----------------------CCCC-------CCCCCCCcEEEEccCCcEEEE---------
Q 001311 922 WEKQKN---RF--LQI-----------------------PTGR-------TPTAQSDTRVQFHQDQIHFLV--------- 957 (1102)
Q Consensus 922 ~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~~~~spdg~~l~~--------- 957 (1102)
...... .+ +.. ..+. ......+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 221000 00 000 0000 011245678999999998875
Q ss_pred ---E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 958 ---V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 958 ---~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
+ ....|.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2457889999988864432 468899999999999999866 89999998887
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=322.86 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=225.7
Q ss_pred cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311 736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 815 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s 815 (1102)
.+|...|.++.|+++ +|++++.|+.|++|++..... .... .+...+|...|.+++|+
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR 67 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence 358899999999998 899999999999999743110 1111 01112388999999999
Q ss_pred cCCCeEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec----ceee
Q 001311 816 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK 883 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~ 883 (1102)
|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999 99999999853 345677899999999999999 899999999999999999943 3567
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEE-EeC
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE 960 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~-~~d 960 (1102)
..+.+|...|.+++|+|++.+|++++.|++|++||+.++. ...+....+|. ..|.+++|+|+ +.+|++ +.|
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETT
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCC
Confidence 7889999999999999999999999999999999987642 12445556665 38999999999 778888 589
Q ss_pred CeEEEEEcCCc--------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee--EEEeCCCcccCCC
Q 001311 961 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1030 (1102)
Q Consensus 961 ~~i~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~g 1030 (1102)
+.|++||+.++ .+...+. ..|...|.+++|++++ +|++++.||+|+|||..+++. ..... .+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~ 292 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC 292 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence 99999999765 3333332 2489999999999765 899999999999999988743 32221 23
Q ss_pred CCCCcccceEEEecCC-CCCEEEEEecCCcEEEEeccC
Q 001311 1031 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1031 h~~~~v~~~~v~f~p~-d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
|....+. +++|+|. ++.+|++|+.||+|++|++.+
T Consensus 293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3332355 8999985 578999999999999999865
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=351.23 Aligned_cols=355 Identities=9% Similarity=0.014 Sum_probs=236.8
Q ss_pred CCCCeEEEEEccCC---------CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311 407 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 477 (1102)
Q Consensus 407 h~~~V~~l~~spdg---------~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 477 (1102)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56799999999987 799999866420 01368888 799999999
Q ss_pred cEEEEeCCCCeee----EEeecCCCCeEEEeeeec----CCccEEEEEeCCCeEEEEEcCCCCCeee-ecCCCCeeeEEE
Q 001311 478 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMA 548 (1102)
Q Consensus 478 ~i~vWd~~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~ 548 (1102)
+|+|||+.++++. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+........ .....
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~------- 256 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE------- 256 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC-------
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec-------
Confidence 9999999887653 456778899999999875 3467999999999999999986542200 00000
Q ss_pred EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeE--EEcCCC-CEEEEE
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRI--RFNKDG-CLLAVS 624 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~ 624 (1102)
.....+.+| ...+.+++|+++ ..|++|+.||+|++||+.++. +...+..|. ..|.++ +|++++ .+|+++
T Consensus 257 ---~p~~~l~~h-~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 257 ---KPSLTLSLA-DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD--SYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp ---SCSEEECCT-TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS--SCEEEEEEECCTTSCCEEEEE
T ss_pred ---CceEEEEcC-CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc--ccEEEEEEEcCCCCCeEEEEe
Confidence 000122222 236667777664 479999999999999998764 445566554 479998 578888 899999
Q ss_pred ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311 625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 704 (1102)
Q Consensus 625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1102)
+.|++|++||++++ +....+.+|.
T Consensus 330 S~D~tvklWD~~~~-~~~~~~~~~~------------------------------------------------------- 353 (524)
T 2j04_B 330 AVDGYFYIFNPKDI-ATTKTTVSRF------------------------------------------------------- 353 (524)
T ss_dssp ETTSEEEEECGGGH-HHHCEEEEEC-------------------------------------------------------
T ss_pred ccCCeEEEEECCCC-Cccccccccc-------------------------------------------------------
Confidence 99999999998765 2211111000
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 784 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 784 (1102)
T Consensus 354 -------------------------------------------------------------------------------- 353 (524)
T 2j04_B 354 -------------------------------------------------------------------------------- 353 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE
Q 001311 785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 863 (1102)
Q Consensus 785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l 863 (1102)
....|.+++|+|+++.+++++ |++|++||++++.++.++.+|.+.|++++|+| ++++|
T Consensus 354 --------------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l 412 (524)
T 2j04_B 354 --------------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV 412 (524)
T ss_dssp --------------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred --------------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence 112356788999998888887 88999999999998888999999999999999 89999
Q ss_pred EEEeCCCcEEEEEeecceeeeeecc-----ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311 864 AIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 938 (1102)
Q Consensus 864 asg~~dg~v~vwd~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 938 (1102)
++|+.||+|++||+..+ .+..+.. +...|++++|+|+++.+. ...+ +.+|+.
T Consensus 413 ~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~------------------- 469 (524)
T 2j04_B 413 LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPL------------------- 469 (524)
T ss_dssp EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------------
T ss_pred EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceeccc-------------------
Confidence 99999999999998643 2222211 112456777777776331 1111 111111
Q ss_pred CCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc---EEEEEeCCCeEEEEEcCC
Q 001311 939 TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 939 ~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~---~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+ .++.++..+. +|...|.+++|+|++. +||+|+.||.|+||++.-
T Consensus 470 ----------------------------~-~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 470 ----------------------------T-VNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -------------------------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ----------------------------c-cCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 0 0122333333 7889999999999954 999999999999999764
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-34 Score=320.52 Aligned_cols=303 Identities=18% Similarity=0.257 Sum_probs=245.1
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|++|+|+|++..+|+||+.|++|+|||+.+.+..... ....+.+|...|.+++|+|||+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEECTTSS
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEECCCCC
Confidence 34699999999999985446999999999999999876432211 1125789999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee-EEeecCCCCe
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPV 500 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~-~~~~~h~~~v 500 (1102)
+|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++||+...... ..+.+|...+
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred EEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 99999999999999999876554 3567888999999999999 7999999999999998876554 4557899999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
..++|++.....++++++.|+.|++||+.+......+..|...|.+++|+|++ ++|+++
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~l~s~ 233 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SLCASG 233 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CEEEEE
Confidence 99999887777889999999999999999877777776666656555555554 579999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
+.|+.|++||+.+.+.+..+..+. .+.++.|+|++.+++ ++.|+.|++||+.++ ..+..+......
T Consensus 234 s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~--------- 299 (340)
T 4aow_A 234 GKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS--------- 299 (340)
T ss_dssp ETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC------------
T ss_pred eCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee---------
Confidence 999999999999999998887553 588999999887655 556899999998876 333333211100
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
....+|..
T Consensus 300 ------------------------------------------------------------------------~~~~~h~~ 307 (340)
T 4aow_A 300 ------------------------------------------------------------------------TSSKAEPP 307 (340)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred ------------------------------------------------------------------------eeccCCCC
Confidence 00023778
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQR 770 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 770 (1102)
.|.+++|+|+|++|++++.||.|++|++.+
T Consensus 308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999999999999999999999999854
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-36 Score=347.46 Aligned_cols=386 Identities=15% Similarity=0.193 Sum_probs=283.1
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEe-eccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCC---Ce-
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 488 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~---~~- 488 (1102)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4678888888765 37743 34333 46 78999999999999 888 899999999999999877 43
Q ss_pred --eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC---CCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311 489 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563 (1102)
Q Consensus 489 --~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 563 (1102)
....+ +|...|.+++|+ +++.+|++++.||.|++||+. .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23344 499999999986 466899999999999999995 44444444433 67777777643 123
Q ss_pred ceeEEE--EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311 564 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 641 (1102)
Q Consensus 564 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 641 (1102)
.+.++. +++++++|++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 555665 678899999999999999999999999999987434558999999999999999999999999998765 22
Q ss_pred eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
+..+.
T Consensus 249 ~~~~~--------------------------------------------------------------------------- 253 (437)
T 3gre_A 249 IRSWS--------------------------------------------------------------------------- 253 (437)
T ss_dssp EEEEB---------------------------------------------------------------------------
T ss_pred EEEEe---------------------------------------------------------------------------
Confidence 22211
Q ss_pred CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311 722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801 (1102)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1102)
..|...|.+++++|
T Consensus 254 --------------~~~~~~v~~~~~~~---------------------------------------------------- 267 (437)
T 3gre_A 254 --------------FGDHAPITHVEVCQ---------------------------------------------------- 267 (437)
T ss_dssp --------------CTTCEEEEEEEECT----------------------------------------------------
T ss_pred --------------cCCCCceEEEEecc----------------------------------------------------
Confidence 00222333333322
Q ss_pred CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
.|++++++|++++ |+.|++||+.+++++..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 2335677899988 89999999999999999999999999999999 65554 111
Q ss_pred eeeeeecc--ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 881 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 881 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
.+.+ |...|++++|+ ++++|++++.|+.|++||+.+++... ...++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeecceEEEEEe
Confidence 1444 99999999999 88999999999999999999876532 222332222345556666666655443
Q ss_pred eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC--CcEEEEEeCCCeEEEEE
Q 001311 959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~s~s~Dg~I~vwd 1011 (1102)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 222233333332 368999999999998 88999999999999995
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-33 Score=330.25 Aligned_cols=320 Identities=15% Similarity=0.251 Sum_probs=262.7
Q ss_pred eeeccCCCCe-eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 340 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 340 ~~~~~h~~~v-~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
..+.+|...| .|+.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence 3455687775 66666 456 499999999999999999988763 789999999999999
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCee-------
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK------- 489 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~------- 489 (1102)
++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999987654 5789999999999995 556 899999999999999998753
Q ss_pred ----------------eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311 490 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553 (1102)
Q Consensus 490 ----------------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1102)
+..+.+|...|.++. +++.++++++.||.|++||+.+.+....+..|...+.+++|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 557788999998874 334799999999999999999877777766666656555555554
Q ss_pred ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311 554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 633 (1102)
Q Consensus 554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 633 (1102)
+++++++.||.|++||+.+++.+..+..|.. .|.+++|+ +.+|++++.||.|++|
T Consensus 323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 5799999999999999999999999986644 78889987 6899999999999999
Q ss_pred EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311 634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 713 (1102)
Q Consensus 634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 713 (1102)
|+.++..... .
T Consensus 378 d~~~~~~~~~-~-------------------------------------------------------------------- 388 (464)
T 3v7d_B 378 DANDYSRKFS-Y-------------------------------------------------------------------- 388 (464)
T ss_dssp ETTTCCEEEE-E--------------------------------------------------------------------
T ss_pred ECCCCceeee-e--------------------------------------------------------------------
Confidence 9865411000 0
Q ss_pred cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311 714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 793 (1102)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 793 (1102)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001311 794 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 872 (1102)
Q Consensus 794 ~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 872 (1102)
.+...+..++|+++++++++++||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+
T Consensus 389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence 033446678889999999999999999999999999876 67788999999997 46777778888877
Q ss_pred EEEEe
Q 001311 873 QIYNV 877 (1102)
Q Consensus 873 ~vwd~ 877 (1102)
.+|-+
T Consensus 457 ~i~~l 461 (464)
T 3v7d_B 457 FLEIL 461 (464)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66643
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=320.78 Aligned_cols=302 Identities=16% Similarity=0.251 Sum_probs=253.8
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999987665 5789999999999999999 79999999999999
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC-----CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
|+.+++++..+. |...|.+++|+ +++.++++++.+ +.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999988 88999999985 566899999998 99999998764332211
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
... ....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TKV------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EEE------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------ccc------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 000 111222333333334688999999999999999999999999865
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
.......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111110
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 797 (1102)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------
Q 001311 798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 870 (1102)
Q Consensus 798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 870 (1102)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 1566688888888888888888 8999999999988888887 778899999999 899999999988
Q ss_pred --------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311 871 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 923 (1102)
Q Consensus 871 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~ 923 (1102)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998754
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-33 Score=349.31 Aligned_cols=260 Identities=21% Similarity=0.304 Sum_probs=213.7
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+.+|.+.|++|+|+|++..+|+||+.|++|+|||+.+...... .....+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 4579999999999998766799999999999999976432110 01114789999999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecCCC
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 498 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h~~ 498 (1102)
+|++|+.|++|+|||+.++..++ .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987655 5789999999999999999 7999999999999997655443332 46899
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.|.+++|+++.....|++++.|++|++||+++......+..|...|.+++|+|++ ++|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence 9999999776555789999999999999999877776666666656555555554 5799
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++ ++.|++||+.++ ..+..+.
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~ 640 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK 640 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence 9999999999999999988777643 3589999999999888776 566999999887 5544443
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=326.15 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=247.2
Q ss_pred CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeE
Q 001311 368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 446 (1102)
Q Consensus 368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~ 446 (1102)
++.++||++.+++... ++.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4567788876665544 4788999999999999 9999999999999999999988765432
Q ss_pred EEe----------eccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC-CccEE
Q 001311 447 LEI----------DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 514 (1102)
Q Consensus 447 ~~l----------~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l 514 (1102)
... .+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+. +...+.++.+.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 111 25999999999999 555 79999999999999999999998887 77889988886543 45699
Q ss_pred EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q 001311 515 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594 (1102)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 594 (1102)
++++.||.|++||+.++.....+..+...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999998888877777777777777766664 25889999999999999877
Q ss_pred c-eEEEEcC-------------CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 595 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 595 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------- 290 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------- 290 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence 5 4444421 23345789999999999999999999999999987722 11111000000
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
.
T Consensus 291 -----------------------------------------------------------------------------~-- 291 (408)
T 4a11_B 291 -----------------------------------------------------------------------------S-- 291 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 820 (1102)
...............+
T Consensus 292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred ----------------------------------------------------------------cccceeEEecCCCceE
Confidence 0000011111223344
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec
Q 001311 821 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 900 (1102)
Q Consensus 821 las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 900 (1102)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555599999999999999999999999999999999 8999999999999999999998877655443322 22333
Q ss_pred -CCCEEEEEcCCCcEEEEEcCC
Q 001311 901 -ALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 901 -d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334556677889999998654
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.7e-35 Score=329.60 Aligned_cols=317 Identities=14% Similarity=0.195 Sum_probs=221.0
Q ss_pred ccCCCCCCeEEEEEccC----CCeEEEEECCCeEEEEEccCCceeeeEEEee--ccccCEEEEEEcCC----CCeeEEEE
Q 001311 403 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 472 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s 472 (1102)
+..+|.+.|.+++|+|+ ...+++++.++.|+|||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 56799999999999994 5566677777799999999887766544333 26788999999999 55 7999
Q ss_pred ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEE
Q 001311 473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 549 (1102)
Q Consensus 473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1102)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999998641 5579999999999999999875544433 222222
Q ss_pred ccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311 550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 629 (1102)
Q Consensus 550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 629 (1102)
|.+++|+|++.+|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 334444444444444444555
Q ss_pred EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccccc
Q 001311 630 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 709 (1102)
Q Consensus 630 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 709 (1102)
|++||+.++ +....+.... .+.+. +..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence 555554433 1111111000 00000 00000000
Q ss_pred CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311 710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 789 (1102)
Q Consensus 710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 789 (1102)
...... .+..
T Consensus 217 ~~~~~~-------------------------------------------------~~~~--------------------- 226 (366)
T 3k26_A 217 QKIHFP-------------------------------------------------DFST--------------------- 226 (366)
T ss_dssp EEECCC-------------------------------------------------SEEE---------------------
T ss_pred eeeccC-------------------------------------------------cccc---------------------
Confidence 000000 0000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce--------------eeeecCCCCCeeEEE
Q 001311 790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 854 (1102)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~--------------~~~~~~~~~~i~~l~ 854 (1102)
. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 1155566666666 45666666 66666776665433 667788999999999
Q ss_pred EecCC--CcEEEEEeCCCcEEEEEeecceee----eeeccc--cccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 855 FHPQD--NNIIAIGMDDSSIQIYNVRVDEVK----SKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 855 ~sp~d--~~~lasg~~dg~v~vwd~~~~~~~----~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
|+| + +++|++|+.||.|++||+.+++.. ..+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999 8 999999999999999999987543 477777 7999999999999999999999999999985
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-33 Score=343.75 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=175.4
Q ss_pred ccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCcee--eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311 403 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 479 (1102)
.+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999996 579999999999999999865321 22346889999999999999999 89999999999
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEEccCCcee
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~ 556 (1102)
+|||+.+++++..+.+|...|.+++|+ +++.+|++|+.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 999999999999999999999999985 55689999999999999997643221111 22333444444444431
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
...+++++.|+.|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 15799999999999999999999988886644 79999999999999999999999999987
Q ss_pred CC
Q 001311 637 DG 638 (1102)
Q Consensus 637 ~~ 638 (1102)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.9e-33 Score=319.17 Aligned_cols=301 Identities=15% Similarity=0.199 Sum_probs=243.8
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe------eeEEeecCCCCeEEEeeeec--CCc---cE
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF 513 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~------~~~~~~~h~~~v~~v~~~~~--~~~---~~ 513 (1102)
....+.+|.+.|++++|+| + +|++|+.||.|++||+.+++ .+..+.+|...|.+++|+++ .++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3445789999999999998 5 79999999999999999988 78899999999999999754 236 79
Q ss_pred EEEEeCCCeEEEEEcCCCCC-----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc----CCCCE-EEEEeCC
Q 001311 514 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD 583 (1102)
Q Consensus 514 l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~----~~~~~-l~~~~~d 583 (1102)
|++++.||.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.|
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 99999999999999988665 4444433100 002355666666 66678 9999999
Q ss_pred CeEEEEECCC------cceEE-----EEcC-----CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311 584 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 584 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
|.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ +|++++.||.|++||+.++ +.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence 9999999998 76665 6643 3345579999999999 9999999999999998765 22211110
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC--
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-- 805 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-- 805 (1102)
. .+|
T Consensus 226 ------------------------------------------------------------------------~--~~h~~ 231 (397)
T 1sq9_A 226 ------------------------------------------------------------------------Q--HSMIN 231 (397)
T ss_dssp ------------------------------------------------------------------------C--C---C
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 003
Q ss_pred -CCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCceeeeecC-------------CCCCeeEEEEecCCCcEEEEEe
Q 001311 806 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 806 -~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++|+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 310 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 310 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence 56678888888888888887 7 7889999888888888887 999999999999 899999999
Q ss_pred CCCcEEEEEeecceeeeeec------cc---------------cccceeEEEecCC----------CEEEEEcCCCcEEE
Q 001311 868 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV 916 (1102)
Q Consensus 868 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~i~v 916 (1102)
.||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++.||.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999998 88 9999999999998 79999999999999
Q ss_pred EEcCCC
Q 001311 917 WSSDGW 922 (1102)
Q Consensus 917 wd~~~~ 922 (1102)
|++.++
T Consensus 391 w~~~~g 396 (397)
T 1sq9_A 391 FREAGG 396 (397)
T ss_dssp EEEEC-
T ss_pred EEcCCC
Confidence 999875
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.5e-33 Score=316.91 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=235.1
Q ss_pred ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEE
Q 001311 403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~ 480 (1102)
.+.+|.+.|.+++|+|++ ++||+|+.||.|+|||+.+++.... ..+.+|...|.+++|+| ++. +|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence 478999999999999999 9999999999999999998876542 23457999999999999 556 799999999999
Q ss_pred EEeCCCCeeeEEeecC---CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311 481 VWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 481 vWd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
+||+.+ ..+..+..| ...|.+++|+ +++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~--- 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD--- 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence 999985 555666544 4889999985 456899999999999999994 455555666655555555555543
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC----cceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 632 (1102)
.++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++.+|++++.|+.|++
T Consensus 218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 2799999999999999987 66666663 3 44799999999 9999999999999999
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
||+.++ .....+.+|....
T Consensus 278 wd~~~~-~~~~~~~~~~~~~------------------------------------------------------------ 296 (383)
T 3ei3_B 278 YSSYDW-SKPDQIIIHPHRQ------------------------------------------------------------ 296 (383)
T ss_dssp EETTBT-TSCSEEEECCBCC------------------------------------------------------------
T ss_pred EECCCC-ccccccccccccc------------------------------------------------------------
Confidence 999887 3333333322110
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 792 (1102)
..|...+. +.|+|++
T Consensus 297 -----------------------~~~~~~~~-~~~~p~~----------------------------------------- 311 (383)
T 3ei3_B 297 -----------------------FQHLTPIK-ATWHPMY----------------------------------------- 311 (383)
T ss_dssp -----------------------CTTSCCCC-CEECSSS-----------------------------------------
T ss_pred -----------------------cccccceE-EeccCCC-----------------------------------------
Confidence 00112222 2344333
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC--CCCCeeEEEEecCCCcEEEEEeCC
Q 001311 793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD 869 (1102)
Q Consensus 793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d 869 (1102)
.+..++++||+++ +++ |+.|++||+.+++.+..+.+ |...+.+++|+| ++++|++|+ |
T Consensus 312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d 372 (383)
T 3ei3_B 312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G 372 (383)
T ss_dssp ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence 3456778889988 666 89999999999999999987 456788889999 999999997 9
Q ss_pred CcEEEEEeec
Q 001311 870 SSIQIYNVRV 879 (1102)
Q Consensus 870 g~v~vwd~~~ 879 (1102)
|.|+|||+.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=308.89 Aligned_cols=306 Identities=11% Similarity=0.115 Sum_probs=241.2
Q ss_pred ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
.+...+.+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 445556779999999999999995 9999999999999999988776 37889999999999
Q ss_pred ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-----CcEEEEeCCCCe---
Q 001311 417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 488 (1102)
Q Consensus 417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-----~~i~vWd~~~~~--- 488 (1102)
+|++++|++++.|+.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 99999999999999999999999887653 33 889999999999999 78888888 999999998764
Q ss_pred --------eeEEeecCCC--CeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceee
Q 001311 489 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 489 --------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
.+..+..|.+ .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~----------- 223 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD----------- 223 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE-----------
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE-----------
Confidence 3455666766 899999854 567999999999999999987 4444455555544444
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
++|+|++++|++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.+.+|....
T Consensus 224 ----------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 224 ----------MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp ----------EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred ----------EEECCCCCEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 455555568999999999999999999998888733 3589999999999999999998655554322
Q ss_pred CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311 638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 717 (1102)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 717 (1102)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 10 01245555
Q ss_pred ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecccc
Q 001311 718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 771 (1102)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 771 (1102)
+.......... .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 55432211111 237789999999999999999999999999998654
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-33 Score=326.92 Aligned_cols=241 Identities=15% Similarity=0.235 Sum_probs=189.1
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 420 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 420 (1102)
..+|...|+||+|+|....+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| |+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence 34588999999999965557999999999999999877543321 3578999999999998 78
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
++|++|+.||+|+|||++++.. ........+...+.+++|+++++ +|++|+.||.|++||++ ++.+..+.+|...|
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v 253 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV 253 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence 9999999999999999987643 32222233455688999999999 89999999999999975 56778899999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
.+++|++..+ .+|++|+.|+.|++||+++......+ ..|.. .+.+++|+|++++|
T Consensus 254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~---------------------~v~~~~~spdg~~l 311 (435)
T 4e54_B 254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH---------------------PVNAACFSPDGARL 311 (435)
T ss_dssp EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS---------------------CEEECCBCTTSSEE
T ss_pred EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccc---------------------cccceeECCCCCee
Confidence 9999975443 58899999999999999876544322 23333 45555566666789
Q ss_pred EEEeCCCeEEEEECCCcceEEEEcCCCCC----CCcCeEEEcCCCCEEEEEE
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST 625 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~ 625 (1102)
++++.||.|++||+.++.....+..+... ..+..+.|+|++..++++.
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 99999999999999999888877655321 1234567888887777664
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.9e-34 Score=329.24 Aligned_cols=310 Identities=13% Similarity=0.121 Sum_probs=227.6
Q ss_pred cCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEE
Q 001311 404 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 404 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~v 481 (1102)
..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++. +|+||+.|++|++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence 456888999999999 67899999999999999998876432 335678999999999998 566 7999999999999
Q ss_pred EeCCCCeeeEEeecCC--CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 482 WDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
||++++........|. ..+.+++| ++++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~----- 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD----- 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred eeccCCceeEEeccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence 9998766544444333 34566666 56678999999999999999874 45556677777777777777665
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.++++++.|+.|++||+.+.+....+. ...+...|.+++|+|+|.+|++++.||.|++||+.++
T Consensus 264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 468899999999999998876544332 2234557999999999999999999999999999887
Q ss_pred ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311 639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 718 (1102)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 718 (1102)
.....+..|.....
T Consensus 329 -~~~~~~~~~~~~~~----------------------------------------------------------------- 342 (435)
T 4e54_B 329 -DCPLGLIPHPHRHF----------------------------------------------------------------- 342 (435)
T ss_dssp -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred -ccceEEeccccccc-----------------------------------------------------------------
Confidence 33333322221100
Q ss_pred cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 798 (1102)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 798 (1102)
....+....|+|++..++++
T Consensus 343 -------------------~~~~~~~~~~~~~~~~~~~~----------------------------------------- 362 (435)
T 4e54_B 343 -------------------QHLTPIKAAWHPRYNLIVVG----------------------------------------- 362 (435)
T ss_dssp -------------------SSSCCCBCEECSSSSCEEEE-----------------------------------------
T ss_pred -------------------ccceeEEEEEcCCCCEEEEE-----------------------------------------
Confidence 00111123445555444333
Q ss_pred ccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEE-EEecCCCcEEEEEeCCCcEEE
Q 001311 799 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI 874 (1102)
Q Consensus 799 ~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~-~~~~~i~~l-~~sp~d~~~lasg~~dg~v~v 874 (1102)
+++++..++++. ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus 363 ---------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i 425 (435)
T 4e54_B 363 ---------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI 425 (435)
T ss_dssp ---------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred ---------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence 333444444333 4679999999999888764 677888887 6999 899999876 889999
Q ss_pred EEeeccee
Q 001311 875 YNVRVDEV 882 (1102)
Q Consensus 875 wd~~~~~~ 882 (1102)
||+++++.
T Consensus 426 W~~~~gk~ 433 (435)
T 4e54_B 426 WSQQEART 433 (435)
T ss_dssp CCCC----
T ss_pred EECCcCee
Confidence 99998765
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=321.31 Aligned_cols=362 Identities=12% Similarity=0.155 Sum_probs=248.0
Q ss_pred CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311 582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 660 (1102)
Q Consensus 582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1102)
.++.+++|++..++....+..|. ..|.+++|+| ++++|++++.||.|++||+.++. ....+......
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~--------- 88 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVC--------- 88 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEE---------
T ss_pred ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEeccccc---------
Confidence 35567888888888887777654 4899999999 99999999999999999998762 22111100000
Q ss_pred CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311 661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 740 (1102)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 740 (1102)
... .....+|..
T Consensus 89 ---------------------------------------------------------~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 89 ---------------------------------------------------------SIG-----------RDHPDVHRY 100 (408)
T ss_dssp ---------------------------------------------------------EEC-----------TTCTTCCSS
T ss_pred ---------------------------------------------------------ccc-----------ccccccCCC
Confidence 000 000023788
Q ss_pred ceEEEEEcc-CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC--
Q 001311 741 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 817 (1102)
Q Consensus 741 ~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d-- 817 (1102)
.|.+++|+| ++..+++++.|+.|++|++.. +...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----------------------LQTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT----------------------TEEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----------------------Cccceec----cCCCceeeeEeecCCC
Confidence 999999999 778999999999999998743 2211111 15677899999885
Q ss_pred -CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeecce-eeeee-------
Q 001311 818 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 886 (1102)
Q Consensus 818 -~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l------- 886 (1102)
+.++++++ |+.|++||+.+++.+..+.+|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899888 89999999999999999999999999999999 666 69999999999999997754 33333
Q ss_pred --------ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 887 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 887 --------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
.+|...|.+++|+|++++|++++.|+.|++||+.+++............. .............+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS--KKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC--SSCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc--cccceeEEecCCCceEEEEe
Confidence 57899999999999999999999999999999998764322111111110 01122333344456666668
Q ss_pred eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311 959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus 959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
.++.|++||+.+++.+..+. +|...|++++|+||+++|++++.||.|++||+.+++.+...... ..
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee-
Confidence 99999999999999998876 78999999999999999999999999999999999887654410 01
Q ss_pred eEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1039 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1039 ~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
...+.+.+...+.+.+.|+.+++|+...
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1233343456677888999999998753
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.7e-33 Score=302.29 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=206.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 418 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 418 (1102)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+. +.+. .+.+|.+.|.+++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 4569999999999999996 999999999999999753 3332 4789999999999987
Q ss_pred -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311 419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 493 (1102)
Q Consensus 419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~ 493 (1102)
++++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 4899999999999999999987522 22357789999999999998 67 79999999999999998764 24677
Q ss_pred ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCC----CeeeecCCCCeeeEEEEccCCceeee
Q 001311 494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
.+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999997642 25799999999999999998765 3345566666666666666541
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
.+.+|++++.|++|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02579999999999999998753 1223322344557899999999999999999999999997
Q ss_pred cC
Q 001311 636 SD 637 (1102)
Q Consensus 636 ~~ 637 (1102)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.6e-33 Score=316.25 Aligned_cols=308 Identities=12% Similarity=0.175 Sum_probs=240.4
Q ss_pred EEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccc
Q 001311 588 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 666 (1102)
Q Consensus 588 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1102)
+|++...+....+..|. ..|.+++|+|++ ++|++++.||.|++||+.++ .....+..
T Consensus 57 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~------------------- 114 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQG------------------- 114 (383)
T ss_dssp HHHHTTCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECC-------------------
T ss_pred cccccccceEEeccCCC--CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeec-------------------
Confidence 34445566666776554 479999999999 99999999999999998766 22111100
Q ss_pred hhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEE
Q 001311 667 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 746 (1102)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 746 (1102)
.+|...|.+++
T Consensus 115 ---------------------------------------------------------------------~~h~~~v~~~~ 125 (383)
T 3ei3_B 115 ---------------------------------------------------------------------MGPGDAITGMK 125 (383)
T ss_dssp ---------------------------------------------------------------------CSTTCBEEEEE
T ss_pred ---------------------------------------------------------------------CCcCCceeEEE
Confidence 13778999999
Q ss_pred Ecc-CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311 747 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825 (1102)
Q Consensus 747 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s 825 (1102)
|+| +++.+++++.|+.|++||+... ..........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGS-----------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSC-----------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCC-----------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 7899999999999999997421 1111111122568899999999999999999
Q ss_pred -CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeec----ceeeeeeccccccceeEEEe
Q 001311 826 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 826 -dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s 899 (1102)
|+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.|+.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 999999999 5788889999999999999999 777 999999999999999998 5666666 699999999999
Q ss_pred c-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecC--CCCCC-------CCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001311 900 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 969 (1102)
Q Consensus 900 ~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~ 969 (1102)
| ++++|++++.|+.|++||+.+++.......... ..+.. +...+..++|+|+|++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 999999999999999999998765332221110 01110 0012334556666665 22479999999999
Q ss_pred CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+++.+..+..+.|...+..++|+||+++|++|+ ||.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999988666788899999999999999997 99999999875
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=310.68 Aligned_cols=299 Identities=11% Similarity=0.166 Sum_probs=235.0
Q ss_pred EeeccccCEEEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecC-CccEEEEEeCCCe
Q 001311 448 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 522 (1102)
Q Consensus 448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~~l~s~s~dg~ 522 (1102)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 46789999999999999975 5667776 999999999998876543 3799999999996542 2589999999999
Q ss_pred EEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEE
Q 001311 523 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 600 (1102)
Q Consensus 523 i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 600 (1102)
|++||+.+.+ ....+..|...|.++.|.+. ++|++++++|++++.||.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 67777778777777765432 1356677789999999999999999887 67777
Q ss_pred cCCCC--CCCcCeEE----EcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhh
Q 001311 601 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 674 (1102)
Q Consensus 601 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1102)
..+.. ...+.+++ |+|++++|++++.||.|++||+.++. ....
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence 65433 23677787 67899999999999999999986651 1000
Q ss_pred hccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceE
Q 001311 675 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 754 (1102)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 754 (1102)
..
T Consensus 206 -------------------------------------------------------------~~----------------- 207 (357)
T 3i2n_A 206 -------------------------------------------------------------TN----------------- 207 (357)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec---CCCeEEEEe-CCeEE
Q 001311 755 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 830 (1102)
Q Consensus 755 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~---d~~~las~s-dg~I~ 830 (1102)
|...|.+++|+| ++.++++++ ||.|+
T Consensus 208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 344566666666 666677666 67777
Q ss_pred EEEcCCCceeeeec-----CCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeecc-------------------eeeee
Q 001311 831 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 885 (1102)
Q Consensus 831 iwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~ 885 (1102)
+||+.+++....+. +|...|++++|+| +++ +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77776655554443 8999999999999 777 8999999999999999853 46677
Q ss_pred eccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCCC
Q 001311 886 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 922 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~ 922 (1102)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 889999999999999999998 8999999999999874
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=309.25 Aligned_cols=322 Identities=14% Similarity=0.180 Sum_probs=237.1
Q ss_pred ccCCCCCCeEEEEEccCCCeEE-EEEC---CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEecC
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 475 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~ 475 (1102)
++.+|.+.|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. +|++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999996555 5555 99999999999875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEeCCCCe-eeEEeecCCCCeEEEeeee----cCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEE
Q 001311 476 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAY 549 (1102)
Q Consensus 476 d~~i~vWd~~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~ 549 (1102)
|+.|++||+.+++ .+..+.+|...|.++.|.+ ++++.+|++++.||.|++||+.+.. ....+..+..
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------- 161 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG------- 161 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-------
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-------
Confidence 9999999999998 8899999999999997643 5677899999999999999999876 4444433322
Q ss_pred ccCCceeeeccccCceeEEE----EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC---CCCEEE
Q 001311 550 SADGTRTYQGFRKRSLGVVQ----FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA 622 (1102)
Q Consensus 550 s~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~ 622 (1102)
+....+.++. ++++++++++++.||.|++||+.+++...... + ...|.+++|+| ++.+|+
T Consensus 162 ----------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 162 ----------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp ----------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred ----------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence 1112344444 66778899999999999999999988765543 3 33699999999 999999
Q ss_pred EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311 623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 702 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1102)
+++.||.|++||+.++ .....+..
T Consensus 229 ~~~~dg~i~i~d~~~~-~~~~~~~~------------------------------------------------------- 252 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQ-HPTKGFAS------------------------------------------------------- 252 (357)
T ss_dssp EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence 9999999999998765 22111100
Q ss_pred CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccc
Q 001311 703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA 781 (1102)
Q Consensus 703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 781 (1102)
... .+|...|.+++|+|++. ++++++.||.|++|++...
T Consensus 253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 292 (357)
T 3i2n_A 253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP---------- 292 (357)
T ss_dssp --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence 000 12667788888888887 6788888888888876321
Q ss_pred cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001311 782 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 861 (1102)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 861 (1102)
... ..+.+++..... .+ +.+.+..+.+|...|++++|+| +++
T Consensus 293 ------------~~~---------------~~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~ 334 (357)
T 3i2n_A 293 ------------IQR---------------SKKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR 334 (357)
T ss_dssp ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred ------------ccc---------------ccccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence 000 001111111100 11 1245667888999999999999 788
Q ss_pred EEE-EEeCCCcEEEEEeeccee
Q 001311 862 IIA-IGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 862 ~la-sg~~dg~v~vwd~~~~~~ 882 (1102)
+|+ +|+.||.|+|||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 887 899999999999987553
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-32 Score=310.69 Aligned_cols=326 Identities=13% Similarity=0.165 Sum_probs=241.6
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
+..|.++|.+++|+||+++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999886 223345789999999999999999 799999999999999
Q ss_pred CCCCeeeEE--eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 484 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 484 ~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
+.+++.... +.+|...|.+++|+ +++.+|++++.|+.|++||++........ ..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----------------~~~~~~~ 141 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVC-----------------KHIKKPI 141 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEE-----------------EEECTTC
T ss_pred CCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceee-----------------eeeeccc
Confidence 999876544 46799999999985 55689999999999999999876532111 0111112
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEEC------------------CCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 623 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 623 (1102)
...+.+++|+|++++|++++.||.|++||+ ..++.+..+..+ ...|.+++|+|++++|++
T Consensus 142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEE
Confidence 235666667777778999999999999995 366777777655 347999999999999999
Q ss_pred EECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311 624 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 703 (1102)
Q Consensus 624 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1102)
++.||.|++||+.++ +.+..+.
T Consensus 220 ~~~d~~i~i~d~~~~-~~~~~~~--------------------------------------------------------- 241 (372)
T 1k8k_C 220 VSHDSTVCLADADKK-MAVATLA--------------------------------------------------------- 241 (372)
T ss_dssp EETTTEEEEEEGGGT-TEEEEEE---------------------------------------------------------
T ss_pred EeCCCEEEEEECCCC-ceeEEEc---------------------------------------------------------
Confidence 999999999999876 3332221
Q ss_pred ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccc
Q 001311 704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 783 (1102)
Q Consensus 704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 783 (1102)
.|...|.+++|+|++.+++++ .|+.+++|++..
T Consensus 242 ---------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~------------- 274 (372)
T 1k8k_C 242 ---------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS------------- 274 (372)
T ss_dssp ---------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET-------------
T ss_pred ---------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC-------------
Confidence 155678899999999866666 899999998732
Q ss_pred cceeccCCCccc-cccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEE---EcCCCcee------eee-cCCCCCeeE
Q 001311 784 APQLWQPPSGIM-MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPAATF 852 (1102)
Q Consensus 784 ~~~~w~~~~~~~-~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iw---d~~~~~~~------~~~-~~~~~~i~~ 852 (1102)
..+.. ....+.. +. .-..+....+++| +... ... ..+ .+|...|++
T Consensus 275 -------~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 275 -------AAGKLSFGGRLDV--PK-------------QSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQ 331 (372)
T ss_dssp -------TTTEEEECCCCCC--C---------------------CHHHHHHHCCCCC----------CCCSSSSSSCEEE
T ss_pred -------cCceEEEeeccCc--cc-------------cchhhhcchhhhhhhccccc-ccccCccccccccccccCCcce
Confidence 00211 0100000 00 0011113445556 4322 222 333 489999999
Q ss_pred EEEecCCC---cEEEEEeCCCcEEEEEeecce
Q 001311 853 LAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 853 l~~sp~d~---~~lasg~~dg~v~vwd~~~~~ 881 (1102)
++|.+.++ .+|++|+.||.|++||+.+++
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99775477 999999999999999998754
No 77
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-32 Score=310.40 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=206.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
|.+.|++++|+|+|++ |++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999995 9999999999999999886 443 36789999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---e-EEeecCCC
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA 498 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---~-~~~~~h~~ 498 (1102)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999886443 334578999999999999999 799999999999999998763 3 33467899
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC------------------CCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL------------------GSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
.|.+++|+ +++.+|++++.||.|++||+... .....+..+
T Consensus 144 ~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 201 (372)
T 1k8k_C 144 TVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-------------------- 201 (372)
T ss_dssp CEEEEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--------------------
T ss_pred CeeEEEEc--CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--------------------
Confidence 99999985 45689999999999999997532 222222222
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
...+.+++|+|++++|++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++.+|+++ .|+.|++|++.+
T Consensus 202 -~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 202 -CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 23566677777777899999999999999999999999886643 79999999999988888 899999999987
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-32 Score=312.29 Aligned_cols=265 Identities=17% Similarity=0.260 Sum_probs=210.5
Q ss_pred ccCCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 343 LNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 343 ~~h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
.+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|+|+
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYD 80 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEEC
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccC
Confidence 369999999999995 55457777777899999999887665311 1123347889999999999
Q ss_pred ----CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEe-
Q 001311 420 ----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF- 493 (1102)
Q Consensus 420 ----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~- 493 (1102)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~ 155 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFG 155 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEec
Confidence 6799999999999999999987655 4778999999999999 777 8999999999999999999999988
Q ss_pred --ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc-------------eeee
Q 001311 494 --EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQ 558 (1102)
Q Consensus 494 --~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~ 558 (1102)
.+|...|.+++|+ +++.+|++++.||.|++||+++......+.. .+.+++++. ....
T Consensus 156 ~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 156 GVEGHRDEVLSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp STTSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred ccccccCceeEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCccccc
Confidence 7899999999985 4668999999999999999987554432221 011111111 0111
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--------------EEEEcCCCCCCCcCeEEEcCC--CCEEE
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLA 622 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~ 622 (1102)
..+...+.+++|+ ++++++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|+
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEE
Confidence 1134567778887 67899999999999999987754 56666554 47999999999 99999
Q ss_pred EEECCCcEEEEEccCC
Q 001311 623 VSTNDNGIKILATSDG 638 (1102)
Q Consensus 623 ~~~~dg~i~iwd~~~~ 638 (1102)
+++.||.|++||+.++
T Consensus 304 ~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EEecCCcEEEEECCCC
Confidence 9999999999999876
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-32 Score=297.15 Aligned_cols=244 Identities=17% Similarity=0.226 Sum_probs=204.8
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
..+.+|.+.|++++| |++++ |++|+.||.|+|||+.+++... .+..|...|.+++|+|+
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDSE 70 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEETT
T ss_pred HHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECCC
Confidence 344569999999999 99996 9999999999999998887665 36788999999999999
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
+++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|...
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~ 144 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNAS 144 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSC
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCc
Confidence 999999999999999999876544444568899999999999 566 799999999999999 78888999999999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
|.+++|.+ .++.++++++.||.|++||.. .....+.. +...+. +++++|++. ++
T Consensus 145 v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~---------------------~~~~~~~~~-~~ 199 (313)
T 3odt_A 145 VWDAKVVS-FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVR---------------------HLAVVDDGH-FI 199 (313)
T ss_dssp EEEEEEEE-TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEE---------------------EEEEEETTE-EE
T ss_pred eeEEEEcc-CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEE---------------------EEEEcCCCe-EE
Confidence 99999875 245799999999999999933 33333333 444444 445555545 89
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.||.|++||+.+++.+..+..+.. .|.+++|+|++ .|++++.||.|++||+.++
T Consensus 200 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999999999999999999886644 79999999999 5889999999999998877
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=321.35 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=196.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
|.+.|++++|+|+|++ |++|+.|+.|+|||+.++. .+. .+.+|.+.|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 6679999999999995 9999999999999998873 332 47899999999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe---eeEEeec-CCC
Q 001311 423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 498 (1102)
Q Consensus 423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~---~~~~~~~-h~~ 498 (1102)
|++++.|++|+|||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873334445788999999999999999 79999999999999999987 4778888 999
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC--CC--eeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
.|.+++|+ +++.+|++++.|+.|++||+............ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEEC--TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEc--CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 99999985 46689999999999999999753321110000 00 000000 111 234468888888888
Q ss_pred CEEEEEeCCCeEEEEECCCcce----EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
++|++++.||.|++||+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999987 66666554 479999999999999998766665 66554
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-32 Score=313.38 Aligned_cols=256 Identities=12% Similarity=0.098 Sum_probs=209.8
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe------eEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 415 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 415 (1102)
+.+|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+. .+.+|...|.+++
T Consensus 12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 69 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVD 69 (397)
T ss_dssp SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEE
T ss_pred hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEE
Confidence 346999999999999 4 59999999999999999876 332 3678999999999
Q ss_pred EccC----C---CeEEEEECCCeEEEEEccCCcee--eeEEEeecc-----ccCEEEEEEc----CCCCeeE-EEEecCC
Q 001311 416 WSPD----G---SLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDD 476 (1102)
Q Consensus 416 ~spd----g---~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~~~d 476 (1102)
|+|+ | ++|++++.|+.|++||+.+++.. .....+.+| ...|.+++|+ |+++ + |++++.|
T Consensus 70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d 147 (397)
T 1sq9_A 70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK 147 (397)
T ss_dssp EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence 9999 9 99999999999999999988750 002246778 6999999999 9999 7 9999999
Q ss_pred CcEEEEeCCC------CeeeE-----Eee-------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311 477 KTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 538 (1102)
Q Consensus 477 ~~i~vWd~~~------~~~~~-----~~~-------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1102)
+.|++||+.+ ++.+. .+. .|...|.+++|+ +++ ++++++.||.|++||+++......+.
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFE 224 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence 9999999998 77776 774 489999999985 566 99999999999999999876665555
Q ss_pred C---C---CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEEcCCC-----
Q 001311 539 A---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG----- 604 (1102)
Q Consensus 539 ~---~---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~----- 604 (1102)
. | .. .+.+++|+|++++|++++.| +.|++||+.+++.+..+....
T Consensus 225 ~~~~h~~~~~---------------------~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 225 SQHSMINNSN---------------------SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp CCC---CCCC---------------------CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred ccccccccCC---------------------ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence 4 4 44 45555555566789999999 999999999999999887610
Q ss_pred ------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311 605 ------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 605 ------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 2447999999999999999999999999999887 5555544
No 82
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-31 Score=294.87 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=232.7
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 58899999999999 999999999999999999998876554 4678999999999999999 89999999999999
Q ss_pred eCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311 483 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 559 (1102)
Q Consensus 483 d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 559 (1102)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~------- 153 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF------- 153 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-------
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-------
Confidence 98764 667888999999999998 236899999999999999 44445555555555555555441
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
+++++++++.|+.|++|| .++....+... +...+.+++|+|++. +++++.||.|++||+.++
T Consensus 154 -------------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~- 215 (313)
T 3odt_A 154 -------------SENKFLTASADKTIKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG- 215 (313)
T ss_dssp -------------TTTEEEEEETTSCEEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-
T ss_pred -------------CCCEEEEEECCCCEEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-
Confidence 446899999999999999 45566666541 244789999999998 899999999999998655
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
+.+..+.
T Consensus 216 ~~~~~~~------------------------------------------------------------------------- 222 (313)
T 3odt_A 216 DVLRTYE------------------------------------------------------------------------- 222 (313)
T ss_dssp CEEEEEE-------------------------------------------------------------------------
T ss_pred hhhhhhh-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
T Consensus 223 -------------------------------------------------------------------------------- 222 (313)
T 3odt_A 223 -------------------------------------------------------------------------------- 222 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311 800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 878 (1102)
+|...|.+++|+|++. +++++ ||.|++||+.+++.+..+..|...|.+++|+| +++ +++++.||.|++||+.
T Consensus 223 ----~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 223 ----GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ----CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred ----cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 1566788888888884 66666 89999999999999999999999999999999 777 5569999999999999
Q ss_pred cceeeeee
Q 001311 879 VDEVKSKL 886 (1102)
Q Consensus 879 ~~~~~~~l 886 (1102)
+++.....
T Consensus 296 ~~~~~~~~ 303 (313)
T 3odt_A 296 KSRWASED 303 (313)
T ss_dssp GGGCCC--
T ss_pred CCceeehh
Confidence 87765543
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=318.17 Aligned_cols=327 Identities=12% Similarity=0.106 Sum_probs=243.2
Q ss_pred ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
.-...|.+++|+|||+ +++|++.|++|+ |...++++ .+|...|.+++|+| +| .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsP--dg-------~~~~~~~~~~~- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFP--LE-------FENKLDFELAQ- 75 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEEC--CC-------CCCTTTTSCCC-
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECC--CC-------CcceEEEEeCC-
Confidence 3457899999999999 899999999999 76666554 79999999999865 33 45555555433
Q ss_pred CCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC---C
Q 001311 531 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 606 (1102)
Q Consensus 531 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 606 (1102)
....+. .+.. .+.+++|+|+|.+|++++.||.|++||... ++..+. +.. .
T Consensus 76 --~~~~~~~~~~~---------------------~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 76 --QNGLLNSQPVC---------------------YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp --SSCSSTTSCSC---------------------CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred --CceEeecCCCC---------------------cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 222221 2233 455555555556899999999999999644 555555 332 2
Q ss_pred CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311 607 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686 (1102)
Q Consensus 607 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1102)
..+.+++|||||++|++|+.||+|++||+.++. .... .|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~----------------------- 168 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF----------------------- 168 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence 258999999999999999999999999987651 1000 00
Q ss_pred cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 766 (1102)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw 766 (1102)
+. + ..+
T Consensus 169 ---------------------------i~--------------------------------------l---------~ti 174 (588)
T 2j04_A 169 ---------------------------YF--------------------------------------E---------SSI 174 (588)
T ss_dssp ---------------------------EE--------------------------------------E---------EEE
T ss_pred ---------------------------ee--------------------------------------e---------eee
Confidence 00 0 000
Q ss_pred eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeee
Q 001311 767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF 843 (1102)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~ 843 (1102)
. ....+|...|.+++|+||| +++++.|++|++||+.++.. .+++
T Consensus 175 ~--------------------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 175 R--------------------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp E--------------------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred e--------------------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence 0 0001277889999999999 44444499999999988774 3456
Q ss_pred -cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEE--ecCCCEEEEEcCCCcEEEEEcC
Q 001311 844 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 844 -~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
.+|...|.+++|+ +++||+++ ++.|++||+.+++......+|.+.|.+++| +||+..|++++.||+ ++|..+
T Consensus 222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 4788899999999 37899887 699999999988774444489999999999 999999999999999 999876
Q ss_pred CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311 921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
. ++|+||+..++.. |+++++|+...+. ...+ .+...|++++|||||+.+|+
T Consensus 297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence 2 5589999887775 9999999986554 2222 23667999999999999998
Q ss_pred Ee
Q 001311 1001 CF 1002 (1102)
Q Consensus 1001 ~s 1002 (1102)
++
T Consensus 348 ~~ 349 (588)
T 2j04_A 348 VY 349 (588)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 84
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.1e-32 Score=310.48 Aligned_cols=291 Identities=12% Similarity=0.160 Sum_probs=210.0
Q ss_pred ccCEEEEEEcCCCCeeEEEEecCCC-------cEEEEeCCCCee----------eEEeecCCCCeEEEeeeecCCccEEE
Q 001311 453 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIF 515 (1102)
Q Consensus 453 ~~~V~~v~~s~d~~~~~l~s~~~d~-------~i~vWd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~ 515 (1102)
.-||++++|+||++ +|++||.|. .|++|++..+.. ...+.+|...|.++++. . ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence 35899999999999 799987544 599999876532 13467888889888753 3 4566
Q ss_pred EEe-----------CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe--C
Q 001311 516 STA-----------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--D 582 (1102)
Q Consensus 516 s~s-----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~ 582 (1102)
+|+ .|+.+++|++.......... ....+. .....+..+.+++|+|||+++++++ .
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL------TSVDFD------ASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE------EEECSS------CCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceEEEe------eeecee------ecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 654 46778888876654332211 111000 0011123456777888888876554 6
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1102)
|++|++||+.+++++..+..+ ..|.+++|+|||++|++++.+ .+++|+..++........
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~---------------- 215 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD---------------- 215 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC----------------
T ss_pred CCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec----------------
Confidence 899999999999999888633 359999999999999999854 566666555421111000
Q ss_pred cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311 663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742 (1102)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 742 (1102)
..
T Consensus 216 -------------------------------------------------------------------------~~----- 217 (365)
T 4h5i_A 216 -------------------------------------------------------------------------FD----- 217 (365)
T ss_dssp -------------------------------------------------------------------------CC-----
T ss_pred -------------------------------------------------------------------------CC-----
Confidence 01
Q ss_pred EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 822 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la 822 (1102)
|...|.+++|+||+++++
T Consensus 218 --------------------------------------------------------------~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 218 --------------------------------------------------------------KNWSLSKINFIADDTVLI 235 (365)
T ss_dssp --------------------------------------------------------------TTEEEEEEEEEETTEEEE
T ss_pred --------------------------------------------------------------CCCCEEEEEEcCCCCEEE
Confidence 344455566666666666
Q ss_pred EEe-CC----eEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccccc
Q 001311 823 SAS-GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR 892 (1102)
Q Consensus 823 s~s-dg----~I~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~ 892 (1102)
+++ |+ .+++|++..... ...+.+|...|++++|+| |+++||+|+.|++|+|||+.+++++..+ .+|...
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~ 314 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA 314 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC
Confidence 555 43 466677655432 345778999999999999 9999999999999999999999998874 799999
Q ss_pred ceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311 893 ITGLAFSHALNVLVSSGADSQLCVWSSDGW 922 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~ 922 (1102)
|++|+|+|||++|||++.|++|+||++...
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999753
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=318.73 Aligned_cols=318 Identities=8% Similarity=-0.020 Sum_probs=232.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
-...|.+|+|||||++ +||++.|++|+ |...++ .+.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~~-iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTL-YLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSCE-EEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCCE-EEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 4589999999999995 99999999999 754442 247899999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC-----C
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 499 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~-----~ 499 (1102)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||... ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 5666666654433211 12 5688999999999999 799999999999999544 777777 766 4
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
|.+++|+ ++|++|++|+.||+|++||+.++.. ...+..+ ..+ +...+.+++|+|
T Consensus 132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~----------------~~g-h~~~V~sVawSP 192 (588)
T 2j04_A 132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS----------------DAG-SKDWVTHIVWYE 192 (588)
T ss_dssp EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS----------------CTT-CCCCEEEEEEET
T ss_pred EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc----------------ccc-ccccEEEEEEcC
Confidence 9999984 6778999999999999999987542 1222111 011 123566666777
Q ss_pred CCCEEEEEeCCCeEEEEECCCcce---EEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311 573 TKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648 (1102)
Q Consensus 573 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 648 (1102)
+| +++++.|++|++||+.++.. ..++. +| ...|.+++|+ |+.|++++ +++|++||+.++......
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~---- 261 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK---- 261 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----
Confidence 76 78899999999999988774 34553 33 3479999999 68888887 699999998876221111
Q ss_pred cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311 649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 728 (1102)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 728 (1102)
T Consensus 262 -------------------------------------------------------------------------------- 261 (588)
T 2j04_A 262 -------------------------------------------------------------------------------- 261 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccccceEEEEE--ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311 729 RSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 806 (1102)
Q Consensus 729 ~~~~~~~~~~~~~i~~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 806 (1102)
.+|...+..++| +|++..++++..+|+ ++|..+
T Consensus 262 -------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------------------------- 296 (588)
T 2j04_A 262 -------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------------------------- 296 (588)
T ss_dssp -------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------------------------------
T ss_pred -------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------------------------------
Confidence 126667788888 888888888888888 888751
Q ss_pred CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 867 (1102)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+.+|+++
T Consensus 297 ----~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 297 ----ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp ----SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred ----cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 24477777666654 6777777764433 334443 44577777777 777777664
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-31 Score=305.63 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=236.7
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
.-+|.+.+.+.++++++.. +++++.|+.|+|||+.+++.... ....|...|.+++|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp CTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 3356555444444444454 67788999999999999887653 2334899999999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEEeecCCCCe
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHEAPV 500 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~~~~h~~~v 500 (1102)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++| ++. ++++++.|+.|++||++ .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~--~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSW--NRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEE--CCC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999987665 47799999999999 445 79999999999999999 567788999999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++. ..++++
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~ll~~~ 278 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NLLATG 278 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TEEEEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CEEEEe
Confidence 9999854 668999999999999999998887777777777777777777665 456666
Q ss_pred e--CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCCccceeecccccccccccC
Q 001311 581 G--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTS 656 (1102)
Q Consensus 581 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 656 (1102)
+ .|+.|++||+.+++.+..+... ..+.+++|+|+++++++++ .||.|++|++.++ ......
T Consensus 279 ~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~----------- 343 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV----------- 343 (401)
T ss_dssp CCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-----------
T ss_pred cCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-----------
Confidence 5 7999999999999999888643 3599999999999999954 8999999998765 211111
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311 657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 736 (1102)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 736 (1102)
.+ .
T Consensus 344 -------------------------------------------------------------~~----------------~ 346 (401)
T 4aez_A 344 -------------------------------------------------------------DI----------------P 346 (401)
T ss_dssp -------------------------------------------------------------EE----------------E
T ss_pred -------------------------------------------------------------Ee----------------c
Confidence 00 1
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQR 770 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 770 (1102)
+|...|.+++|+|++++|++++.||.|++|++..
T Consensus 347 ~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 2667899999999999999999999999999743
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-32 Score=306.11 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=169.1
Q ss_pred CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311 805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 881 (1102)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence 556688999999999987654 7999999999999998886 778899999999 9999999985 457777777766
Q ss_pred eee--eeccccccceeEEEecCCCEEEEEcCCC----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 882 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 882 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....+|. ..|.+++|+|||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence 543 4567999999999999999999999887 5888988765432222 22233443 379999999999999
Q ss_pred EEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 956 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 956 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
|++ .|+.|+|||+.+++++..+. .+|...|++++|||||++||+||.|++|+|||++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 995 89999999999999988753 389999999999999999999999999999999654
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.9e-31 Score=304.34 Aligned_cols=239 Identities=17% Similarity=0.234 Sum_probs=198.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
-++.|+||+++ +||+|. |++|+|||+.+++..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 35789999875 588775 899999999999876531 2567889999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeEEEeee
Q 001311 428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~~v~~~ 506 (1102)
.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998665 578999999998885 45 7999999999999998864 5567889999999999874
Q ss_pred ecCCccEEEEEeCCCeEEEEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE--E
Q 001311 507 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 580 (1102)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~ 580 (1102)
+++.++++++.|+.|++|+...++. ......+...|.+++|+|++. ..+++ |
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 5668999999999999999987653 234455666677777766654 34554 3
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 638 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~ 638 (1102)
+.|+.|++||+.++++...+..+. .+.++.|+++++.+++++ .||.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 479999999999999999887654 488999999999998876 6899999998776
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=314.03 Aligned_cols=341 Identities=10% Similarity=0.060 Sum_probs=220.3
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
+..|.+.|++++|+|||++||+|+.|+.|+|||+.++. ......+.+|.+.|.+++|+|+++ +|++++.|++|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 34467799999999999999999999999999999873 122335889999999999999998 799999999999999
Q ss_pred CCCCe---eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC---eeeecC-CCCeeeEEEEccCCcee
Q 001311 484 ATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 484 ~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~~ 556 (1102)
+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||+++... ...+.. |..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-------------- 147 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-------------- 147 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--------------
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--------------
Confidence 99987 6778889999999999854 668999999999999999987653 333333 444
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------------cceEEEEcCCCCCCCcCeEEEcCCC
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNKDG 618 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~ 618 (1102)
.+.+++|+|++++|++++.|+.|++||+.. ++++..+ .+...|.+++|+|++
T Consensus 148 -------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 -------TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSG 217 (377)
T ss_dssp -------CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTS
T ss_pred -------CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCC
Confidence 455555666667899999999999999853 3444444 345579999999999
Q ss_pred CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccc
Q 001311 619 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 698 (1102)
Q Consensus 619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1102)
++|++++.||.|++||+.++......+.
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------------------------------- 245 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALI---------------------------------------------------- 245 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECC----------------------------------------------------
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeE----------------------------------------------------
Confidence 9999999999999999987732111000
Q ss_pred cCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCc
Q 001311 699 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 778 (1102)
Q Consensus 699 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 778 (1102)
.+ .+|...|.+++|+|++++|++++.++.+ +|+...........
T Consensus 246 -------------------------------~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 289 (377)
T 3dwl_C 246 -------------------------------TV----KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRD 289 (377)
T ss_dssp -------------------------------CE----ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBC
T ss_pred -------------------------------ee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEee
Confidence 00 2266789999999999988888766666 66553221100000
Q ss_pred ccccccceeccCCCccccc-cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe
Q 001311 779 ATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH 856 (1102)
Q Consensus 779 ~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s 856 (1102)
++........ .............++.|++....+.... .+... ........|.+.|+++++.
T Consensus 290 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~ 353 (377)
T 3dwl_C 290 ---------LDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPY 353 (377)
T ss_dssp ---------CCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEE
T ss_pred ---------ecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEecc
Confidence 0000000000 0000000112244444444433332221 12211 1222345699999999987
Q ss_pred cCCCc---EEEEEeCCCcEEEEEe
Q 001311 857 PQDNN---IIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 857 p~d~~---~lasg~~dg~v~vwd~ 877 (1102)
+.++. .|++|+.||.|+|||+
T Consensus 354 ~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 354 AGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEETTEEEEEEEEETTSEEEEECC
T ss_pred CCCCCceEEEEeecCCCcEEEecC
Confidence 63444 7999999999999985
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-31 Score=304.38 Aligned_cols=299 Identities=15% Similarity=0.211 Sum_probs=225.9
Q ss_pred CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 488 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~ 488 (1102)
-.++.|+||++ ++||+|. |++|+|||..+|+... ...+.+|...|++|+|+|||+ +|++|+.|++|+|||+.+++
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCc
Confidence 35788999986 4777775 9999999999998664 334668889999999999999 89999999999999999999
Q ss_pred eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
++..+.+|...+.++.++ +.+|++|+.|+.+++||....... ..+..|... +..
T Consensus 181 ~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~---------------------~~~ 235 (420)
T 4gga_A 181 RLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---------------------VCG 235 (420)
T ss_dssp EEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC---------------------EEE
T ss_pred EEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccc---------------------eee
Confidence 999999999999988763 368999999999999998865433 334444444 444
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcce----EEEEcCCCCCCCcCeEEEcCCC-CEEEEE--ECCCcEEEEEccCCcc
Q 001311 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIR 640 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~ 640 (1102)
+.++++++++++++.|+.|++|+..+++. +.....+ ...|.+++|+|++ ..++++ +.|++|++||+.++ .
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~ 312 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-A 312 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-E
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-c
Confidence 55555566899999999999999987653 3444433 4478999999955 455554 46899999998766 2
Q ss_pred ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311 641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 720 (1102)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 720 (1102)
....+.
T Consensus 313 ~~~~~~-------------------------------------------------------------------------- 318 (420)
T 4gga_A 313 CLSAVD-------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred cceeec--------------------------------------------------------------------------
Confidence 111110
Q ss_pred cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311 721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 800 (1102)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 800 (1102)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 801 TDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 801 ~~~~~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|.+.|++++|+| |+++||+|+.||+|+|||+
T Consensus 319 ----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 319 ----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp ----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred ----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 223466777788887777653 78999999999999999999999999999999 9999999999999999999
Q ss_pred ecceeeeeeccccccceeEEEe
Q 001311 878 RVDEVKSKLKGHSKRITGLAFS 899 (1102)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s 899 (1102)
......+....+...+....|.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 394 FELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp SCSSCC----------------
T ss_pred CCCCccchhhhccCCccccccC
Confidence 8766666666565554444443
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-31 Score=302.35 Aligned_cols=292 Identities=13% Similarity=0.128 Sum_probs=223.7
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
..+|...+.+.++++++..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 3466655444444444567889999999999999998865432 224899999999999999 799999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
+.+++.+..+.+|...|.+++|. +.++++++.||.|++||++.. .....+..|...|.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~----------------- 221 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC----------------- 221 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-----------------
T ss_pred CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-----------------
Confidence 99999999999999999999982 369999999999999999853 33444455554444
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCCc
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGI 639 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~ 639 (1102)
+++|+|++++|++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++. ++++++ .|+.|++||+.++
T Consensus 222 ----~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~- 294 (401)
T 4aez_A 222 ----GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG- 294 (401)
T ss_dssp ----EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-
T ss_pred ----EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-
Confidence 45555555689999999999999999999988887654 4799999999765 555554 6999999998765
Q ss_pred cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311 640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 719 (1102)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 719 (1102)
..+..+.
T Consensus 295 ~~~~~~~------------------------------------------------------------------------- 301 (401)
T 4aez_A 295 ARVNTVD------------------------------------------------------------------------- 301 (401)
T ss_dssp CEEEEEE-------------------------------------------------------------------------
T ss_pred CEEEEEe-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311 720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 799 (1102)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 799 (1102)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCeEEE--Ee-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEE
Q 001311 800 VTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 874 (1102)
Q Consensus 800 ~~~~~~~~~i~~l~~s~d~~~las--~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v 874 (1102)
+...+.+++|+|+++++++ |+ ||.|++||+.++... ..+.+|...|.+++|+| ++++|++++.||.|++
T Consensus 302 -----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 302 -----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKF 375 (401)
T ss_dssp -----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEE
T ss_pred -----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 2334667777777777777 33 788888888775544 34678999999999999 9999999999999999
Q ss_pred EEeecceeeeee
Q 001311 875 YNVRVDEVKSKL 886 (1102)
Q Consensus 875 wd~~~~~~~~~l 886 (1102)
||+.+++.+...
T Consensus 376 w~~~~~~~~~~~ 387 (401)
T 4aez_A 376 WRVYDGDHVKRP 387 (401)
T ss_dssp EECCC-------
T ss_pred EECCCCcccccc
Confidence 999998876654
No 92
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.9e-31 Score=290.16 Aligned_cols=283 Identities=18% Similarity=0.262 Sum_probs=219.0
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~ 489 (1102)
..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|++++|+|+++ +|++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 46789999986 77766 499999999999987653 34668889999999999999 899999999999999999999
Q ss_pred eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
+..+.+|...+.++.+ .+ .++++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 9999999998876653 22 577788877777777654321
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 649 (1102)
..+..+..+ ...+..+.+++++++|++++.||.|++||+.++.........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 112223333 335778999999999999999999999998766211100000
Q ss_pred ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311 650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 729 (1102)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 729 (1102)
.
T Consensus 192 ---------------------------------------------------------------------~---------- 192 (318)
T 4ggc_A 192 ---------------------------------------------------------------------F---------- 192 (318)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311 730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 809 (1102)
Q Consensus 730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i 809 (1102)
. .+...|
T Consensus 193 ------~-------------------------------------------------------------------~~~~~v 199 (318)
T 4ggc_A 193 ------T-------------------------------------------------------------------QHQGAV 199 (318)
T ss_dssp ------C-------------------------------------------------------------------CCCSCE
T ss_pred ------c-------------------------------------------------------------------ccCCce
Confidence 0 033445
Q ss_pred eEEEEecCCCeE---EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--CCCcEEEEEeecceee
Q 001311 810 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 810 ~~l~~s~d~~~l---as~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~ 883 (1102)
.++++++++..+ ++++ ++.|++||........... +...+..+.|++ ++..+++++ .|+.|+|||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 555555554432 2344 6889999998877666554 667799999999 677666554 7999999999999999
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
..+.+|.+.|++|+|+||+++|||++.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999865
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-31 Score=287.58 Aligned_cols=248 Identities=11% Similarity=0.072 Sum_probs=203.3
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC--CceeeeecCCCCCeeEEEEecC-CCcEEEEEeCCCcEEEEEeec
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~ 879 (1102)
+|...|.+++|+|+|++||+++ |++|+|||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4677899999999999999862 489999999999999999988
Q ss_pred ce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC----
Q 001311 880 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 951 (1102)
Q Consensus 880 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd---- 951 (1102)
++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+..+..... ....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence 74 56678889999999999998 89999999999999999987532211 2223443 37899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCce----EeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCC
Q 001311 952 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 952 ---------g~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 489999999998765 44444 4899999999999995 8999999999999999987
Q ss_pred cee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1015 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1015 ~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
+.. ..... ...+| ...++ +++|+| ++++|++++.||.|++|+...
T Consensus 239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 531 11111 01122 22255 899999 689999999999999999864
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.2e-31 Score=306.44 Aligned_cols=273 Identities=12% Similarity=0.194 Sum_probs=203.4
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC------------CC
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 410 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~ 410 (1102)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++....... ........+.+|. +.
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence 457899999999999996 99999999999999998763110000 0000011467888 88
Q ss_pred eEEEEEccCC--CeEEEEECCCeEEEEEccCCceee------------------------------------eEEE-eec
Q 001311 411 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA 451 (1102)
Q Consensus 411 V~~l~~spdg--~~las~~~d~~v~vwd~~~~~~~~------------------------------------~~~~-l~~ 451 (1102)
|.+++|+|++ .+|++++.|++|++||+.++.... .... ..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754310 0112 368
Q ss_pred cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CeeeE-------EeecCCCCeEEEeeeecCCc-cEEEEEeCCCe
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENI-QFIFSTALDGK 522 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~s~dg~ 522 (1102)
|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++|+.||.
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence 999999999999999 78888 799999999994 44444 2568999999999864 44 79999999999
Q ss_pred EEEEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceE
Q 001311 523 IKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLL 597 (1102)
Q Consensus 523 i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~ 597 (1102)
|++||+++... ...+..+.... ....+. .....+.+++|+|++++|++++. +.|++||+.+ ++.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPS--------NRSFFS-EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-------------CCHHH-HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred EEEEECcCCccccceeeEeccCCCcc--------cccccc-ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 99999998765 44444443210 000000 11136667777777788999998 9999999997 8888
Q ss_pred EEEcCCCCCCC-------------cCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311 598 TSIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI 639 (1102)
Q Consensus 598 ~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 639 (1102)
..+..+..... +..++|+|++++|++++.||.|++||+.++.
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 88876643111 2349999999999999999999999999873
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-31 Score=293.69 Aligned_cols=226 Identities=19% Similarity=0.303 Sum_probs=175.4
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 480 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~ 480 (1102)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999987532 23468899999999999864 66 799999999999
Q ss_pred EEeCCCCe--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC---eeeecCCCCeeeEEEEccCCce
Q 001311 481 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 481 vWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
+||+++++ .+..+.+|...|.+++|+++.++.+|++|+.|++|++||++.... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 667888999999999998766678999999999999999987543 2345667778888888887420
Q ss_pred -eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc---ceEEEEcCCCCCCCcCeEEEcCCC----CEEEEEECC
Q 001311 556 -TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 627 (1102)
Q Consensus 556 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 627 (1102)
.+..+..+ ....++.+|++++.|+.|++||+..+ +.+..+.+| ...|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 00000000 01122468999999999999999755 345555544 4579999999986 899999999
Q ss_pred CcEEEEEccCC
Q 001311 628 NGIKILATSDG 638 (1102)
Q Consensus 628 g~i~iwd~~~~ 638 (1102)
|+|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.8e-32 Score=297.99 Aligned_cols=255 Identities=16% Similarity=0.195 Sum_probs=201.0
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CC
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG 420 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 420 (1102)
.+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++.... ..+.+|.+.|.+++|+| ++
T Consensus 10 ~~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCC
Confidence 369999999999999996 99999999999999987753211 13779999999999986 49
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCee---eEEeec
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEG 495 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~ 495 (1102)
++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999987422 23357899999999999998 56 799999999999999987632 355678
Q ss_pred CCCCeEEEeeeecC---------------CccEEEEEeCCCeEEEEEcCCCC---CeeeecCCCCeeeEEEEccCCceee
Q 001311 496 HEAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTY 557 (1102)
Q Consensus 496 h~~~v~~v~~~~~~---------------~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~ 557 (1102)
|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++..
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-- 226 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-- 226 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC--
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC--
Confidence 99999999987642 14689999999999999997542 33455666666666666665410
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc----eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 633 (1102)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 633 (1102)
++++|++++.|++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.||.|++|
T Consensus 227 ---------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 227 ---------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp ---------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred ---------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 12579999999999999987631 12223333 3479999999999999999999999999
Q ss_pred EccC
Q 001311 634 ATSD 637 (1102)
Q Consensus 634 d~~~ 637 (1102)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9753
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.8e-30 Score=291.67 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=180.6
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 479 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i 479 (1102)
++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|++++|+| |+. +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 67899999999999999999999999999999999976432 34456789999999999999 577 79999999999
Q ss_pred EEEeCCCC---------eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc
Q 001311 480 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 550 (1102)
Q Consensus 480 ~vWd~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1102)
++||+.++ +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++......+... ..+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence 99999987 66888899999999999976533689999999999999999887655433210 001111111
Q ss_pred cCCceeeeccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC----CEEEE
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 623 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 623 (1102)
+ ......+.+++|+|+ +.++++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 P-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp C-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred c-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 1 122346777788776 789999999999999988887763333333445589999999998 89999
Q ss_pred EECCCcEEEEEccCC
Q 001311 624 STNDNGIKILATSDG 638 (1102)
Q Consensus 624 ~~~dg~i~iwd~~~~ 638 (1102)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999998765
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=3.7e-30 Score=288.47 Aligned_cols=294 Identities=13% Similarity=0.105 Sum_probs=230.7
Q ss_pred ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311 403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 482 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW 482 (1102)
+..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 45689999999999999999999999999999999988733333346689999999999999882 38899999999999
Q ss_pred eC-CCCeeeEEeec--CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC---------CCCeeeecCCCCeeeEEEEc
Q 001311 483 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 550 (1102)
Q Consensus 483 d~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s 550 (1102)
|+ .+++. ..+.+ |...|.+++|++ +.+|++++.|+.|++||+++ ......+. +..
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-------- 151 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-------- 151 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC--------
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC--------
Confidence 99 77754 77888 999999999975 57999999999999999886 44333332 333
Q ss_pred cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCC
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 628 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 628 (1102)
.+.++++++++ +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 152 -------------~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 152 -------------KIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp -------------CEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred -------------ceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 45555566554 89999999999999988 55322222223344799999999 999999999999
Q ss_pred cEEEEEccCC-----ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311 629 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 703 (1102)
Q Consensus 629 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1102)
.|++|+.... ......+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 9999997654 011111110000
Q ss_pred ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccc
Q 001311 704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 783 (1102)
Q Consensus 704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 783 (1102)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001311 784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 861 (1102)
Q Consensus 784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 861 (1102)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEeCCCc-EEEEE
Q 001311 862 IIAIGMDDSS-IQIYN 876 (1102)
Q Consensus 862 ~lasg~~dg~-v~vwd 876 (1102)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44433
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=3.6e-30 Score=291.75 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=235.4
Q ss_pred ccCCCCCCeEEEEEccC---CCeEEEEECCCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311 403 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478 (1102)
Q Consensus 403 ~~~~h~~~V~~l~~spd---g~~las~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 478 (1102)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|.+.|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 58899999999999999 69999999999999999998 44332 35778999999999999999 7999999999
Q ss_pred EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~--------- 178 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV--------- 178 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE---------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe---------
Confidence 9999999998776 5569999999999777888999999999999999999877766655443 2222222
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE----EEEEECCCcEEEEE
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 634 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd 634 (1102)
. ...+++++.++.+++|++.................+.++.+.++... +++++.||.|++|+
T Consensus 179 ------------~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 179 ------------I--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ------------E--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred ------------c--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 2 24688899999999999988765544433333345666777665554 99999999999999
Q ss_pred ccCCcc--ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 635 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 635 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
+..... ....+.+|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 263 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSN------------------------------------------------------------- 263 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence 876521 11111111100
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 792 (1102)
. . .
T Consensus 264 -----------------------------~---------~--~------------------------------------- 266 (368)
T 3mmy_A 264 -----------------------------G---------T--N------------------------------------- 266 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------c---------c--c-------------------------------------
Confidence 0 0 0
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001311 793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 871 (1102)
Q Consensus 793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 871 (1102)
.....|...|.+++|+|++++|++++ ||.|++||+.+++++..+.+|...|++++|+| ++++|++|+.|+.
T Consensus 267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 00011556799999999999999998 99999999999999999999999999999999 9999999999986
Q ss_pred EEEEEee
Q 001311 872 IQIYNVR 878 (1102)
Q Consensus 872 v~vwd~~ 878 (1102)
.+.|++.
T Consensus 339 ~~~~~~~ 345 (368)
T 3mmy_A 339 SKGHEFY 345 (368)
T ss_dssp TTCGGGC
T ss_pred ccccccc
Confidence 6655543
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.7e-30 Score=295.47 Aligned_cols=233 Identities=20% Similarity=0.340 Sum_probs=203.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 423 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 423 (1102)
+|...|.|++| ++++ +++|+.||+|+|||+.+++.+. .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 46778998887 7885 9999999999999999988776 37899999999999 89999
Q ss_pred EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee---EEeecCCCCe
Q 001311 424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 500 (1102)
Q Consensus 424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~---~~~~~h~~~v 500 (1102)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|+.|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998655 5788999999999974 4 6999999999999999988766 6788999999
Q ss_pred EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 580 (1102)
.+++| ++.++++|+.||.|++||+++......+..+...+.++.+. +++++++
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99987 34799999999999999999988877777776666665552 3579999
Q ss_pred eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.||.|++||+.+++++..+..+.. .|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999999999986644 7888888 8899999999999999998665
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=290.56 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=198.5
Q ss_pred eccCCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311 342 TLNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 417 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 417 (1102)
..+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+.. .+.+|.+.|.+++|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLDVCWS 95 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEEEEEC
T ss_pred ccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEEEEEC
Confidence 4469999999999999 47 599999999999999997 544422 467899999999999
Q ss_pred cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE--cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311 418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~ 495 (1102)
|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEec
Confidence 999999999999999999999987654 5679999999999 88888 799999999999999999999999987
Q ss_pred CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--CCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
|. .+.++.+. . ..+++++.++.+++|+++.......... ....+..+.+.++... .
T Consensus 170 ~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 227 (368)
T 3mmy_A 170 PE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------------K 227 (368)
T ss_dssp SS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------------C
T ss_pred CC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------------C
Confidence 65 55555543 3 4788899999999999987554332211 1122233333222210 0
Q ss_pred CCEEEEEeCCCeEEEEECCCc---ceEEEEcCCCCC----------CCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 574 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
...+++++.||.|++||+... ..+..+..+... ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 123899999999999999887 556666655321 15899999999999999999999999999876
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-30 Score=289.85 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=204.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC-e
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 422 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 422 (1102)
+|.+.|++++|+|++++ |++|+.|+.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 59999999999999996 89999999999999988761110 002458999999999999999 9
Q ss_pred EEEEECCCeEEEEEc-cCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---------Ceee
Q 001311 423 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 490 (1102)
Q Consensus 423 las~~~d~~v~vwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---------~~~~ 490 (1102)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88764 24778 999999999999 77 799999999999999988 7777
Q ss_pred EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCee--eecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~ 567 (1102)
..+. |...|.+++|+ +++ +++++.|+.|++||+++ ..... ....+. ..+.+
T Consensus 145 ~~~~-~~~~v~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---------------------~~i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLK---------------------YQIRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEEC--SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCS---------------------SCEEE
T ss_pred eEEe-eCCceEEEEec--CCc--EEEEeCCCeEEEEECCccccccceeeecCCC---------------------CceeE
Confidence 7777 89999999985 433 99999999999999987 44321 112222 35566
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCc------ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311 568 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 633 (1102)
Q Consensus 568 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 633 (1102)
++|+| +++++++++.||.|++|+++.. +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 66666 6778999999999999999887 77778876643 3479999999999999999999999999
Q ss_pred EccCC
Q 001311 634 ATSDG 638 (1102)
Q Consensus 634 d~~~~ 638 (1102)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=277.72 Aligned_cols=283 Identities=17% Similarity=0.279 Sum_probs=230.0
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 820 (1102)
....++||+++ +++++.|++|+|||+. +|+.+.. +...+|...|.+++|+|++++
T Consensus 27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence 34678999987 4555679999999863 3333221 122348889999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeeeccccccceeEEE
Q 001311 821 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAF 898 (1102)
Q Consensus 821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~ 898 (1102)
|++|+ |++|++||+.+++++..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..++|
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 99999 9999999999999999999999888876654 579999999999999998764 556778899999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE---E-eCCeEEEEEcCCceEe
Q 001311 899 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECV 974 (1102)
Q Consensus 899 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---~-~d~~i~iwd~~~~~~~ 974 (1102)
++++++|++++.|++|++||+.+++........ ...+. ..|..++++|++..++. + .++.|++||.......
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred cCCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 999999999999999999999987643322222 12222 47889999998765443 2 5789999999998877
Q ss_pred eeeccCCCCCCeeEEEEcCCCcEEEEEe--CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEE
Q 001311 975 KQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1052 (1102)
Q Consensus 975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~ 1052 (1102)
... .|...+..++|++++..+++++ .|+.|+|||+.+++.+.++. +|... |. +++|+| |+.+|+
T Consensus 235 ~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~ 300 (318)
T 4ggc_A 235 SAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVA 300 (318)
T ss_dssp EEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEE
T ss_pred ccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEE
Confidence 665 3577899999999999988765 79999999999999999887 55444 66 899999 689999
Q ss_pred EEecCCcEEEEeccCCC
Q 001311 1053 LGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1053 s~~~Dg~v~vW~~~~~~ 1069 (1102)
||+.||+|+|||+.+.+
T Consensus 301 S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 301 SAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTEEEEECCSCCC
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999997654
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.3e-30 Score=295.63 Aligned_cols=276 Identities=21% Similarity=0.318 Sum_probs=228.7
Q ss_pred eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528 (1102)
Q Consensus 449 l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~ 528 (1102)
..+|...|.+++| +++ ++++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++.+|++|+.||.|++||+
T Consensus 129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 4467788999888 677 7999999999999999999999999999999999987 4579999999999999999
Q ss_pred CCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE---EEEcCCCC
Q 001311 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG 605 (1102)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~ 605 (1102)
.+++....+..|...|.++.|++ +.+++++.||.|++||+.++... ..+..+
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 255 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-- 255 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence 99888777777777666666542 36999999999999999988765 444444
Q ss_pred CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311 606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 685 (1102)
Q Consensus 606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1102)
...|.+++| ++++|++++.||.|++||+.++ +.+..+.
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~--------------------------------------- 293 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN--------------------------------------- 293 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE---------------------------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEc---------------------------------------
Confidence 447888888 7889999999999999998665 2211110
Q ss_pred ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311 686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765 (1102)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i 765 (1102)
T Consensus 294 -------------------------------------------------------------------------------- 293 (435)
T 1p22_A 294 -------------------------------------------------------------------------------- 293 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311 766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 844 (1102)
Q Consensus 766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~ 844 (1102)
+|...|.++++ +++++++++ ||.|++||+.+++++..+.
T Consensus 294 --------------------------------------~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 294 --------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp --------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 14555667776 467888888 8999999999999999999
Q ss_pred CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEE
Q 001311 845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 915 (1102)
Q Consensus 845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~ 915 (1102)
+|...|.+++| ++.+|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++++|++++.||+|+
T Consensus 334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 99999999998 46799999999999999998876 78889999999999999 788999999999999
Q ss_pred EEEcCCCcc
Q 001311 916 VWSSDGWEK 924 (1102)
Q Consensus 916 vwd~~~~~~ 924 (1102)
+||+.+...
T Consensus 409 iwd~~~~~~ 417 (435)
T 1p22_A 409 IWDFLNDPA 417 (435)
T ss_dssp EEC------
T ss_pred EEECCCCCC
Confidence 999987543
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.3e-30 Score=295.75 Aligned_cols=254 Identities=15% Similarity=0.221 Sum_probs=202.9
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 425 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 425 (1102)
.....++++|+...++++|+.||.|+||++....... .....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 3456789999988777789999999999996643321 11124789999999999999 9999999
Q ss_pred EECCCeEEEEEccCCcee----eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe--ecCCCC
Q 001311 426 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 499 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~--~~h~~~ 499 (1102)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223458899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
|.+++|+ +++.+|++++.||.|++||++++.....+ ..+.. ..+..+.|+|++.+|+
T Consensus 179 v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 179 IYSVDWS--RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------------------TRPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------------------SSCCEEEECSTTEEEE
T ss_pred eEEEEEC--CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------------------CcceEEEEcCCCcEEE
Confidence 9999985 46689999999999999999986655544 33332 2344555666666788
Q ss_pred EE---eCCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCCc
Q 001311 579 AA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGI 639 (1102)
Q Consensus 579 ~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~ 639 (1102)
++ +.|+.|++||+.+++. +.... ..+...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 88 6899999999988765 33332 2233468999999999999755 479999999998773
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=288.21 Aligned_cols=253 Identities=17% Similarity=0.210 Sum_probs=208.0
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
+.+|.+.|++++|+|+|++ |++|+.||.|+|||+.. ++.+. .+.+|.+.|++++|+++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp EEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred ecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence 4569999999999999996 99999999999999974 33333 47799999999999987
Q ss_pred --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311 420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 493 (1102)
Q Consensus 420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~ 493 (1102)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 999999999999999999998622 33457789999999999999 78 79999999999999999874 44567
Q ss_pred ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCCCe----eeecCCCCeeeEEEEccCCceeee
Q 001311 494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
.+|...|.+++|++.. ++.+|++++.||.|++||+++.... ..+..|...|
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v-------------- 209 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV-------------- 209 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--------------
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE--------------
Confidence 8899999999997632 5689999999999999999876543 2333444444
Q ss_pred ccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 559 GFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
.+++|+|+ +++|++++.||.|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++
T Consensus 210 -------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 210 -------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282 (379)
T ss_dssp -------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred -------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence 44555555 5689999999999999998875 2333344345567999999999999999999999999
Q ss_pred EEccCC
Q 001311 633 LATSDG 638 (1102)
Q Consensus 633 wd~~~~ 638 (1102)
|++..+
T Consensus 283 w~~~~~ 288 (379)
T 3jrp_A 283 WKENLE 288 (379)
T ss_dssp EEEEET
T ss_pred EeCCCC
Confidence 998765
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.5e-29 Score=284.19 Aligned_cols=260 Identities=10% Similarity=0.131 Sum_probs=207.8
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 419 (1102)
..+|.+.|++++|+|++++ |++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence 4579999999999999995 99999999999999987642211 0114678999999999999 6
Q ss_pred CCeEEEEECCCeEEEEEccCCce------eeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 491 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~~~~ 491 (1102)
+++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999988642 1334467899999999999999 88 79999999999999999887654
Q ss_pred Eee-------------cCCCCeEEEeeeec-CCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCce
Q 001311 492 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 492 ~~~-------------~h~~~v~~v~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 433 68889999998764 1357999999999998887766543 3344455555555555555410
Q ss_pred eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-----------------------------------------
Q 001311 556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 594 (1102)
Q Consensus 556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 594 (1102)
.+++|++++.||.|++||+..+
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0057999999999999999865
Q ss_pred -----ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 595 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 595 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 455555544 447999999999999999999999999999887
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=287.21 Aligned_cols=335 Identities=11% Similarity=0.148 Sum_probs=231.5
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----------eEEEEcCCCCC----------CCcCeEEEcCCC--
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------LLTSIDADGGL----------PASPRIRFNKDG-- 618 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~s~~~-- 618 (1102)
...+.+++|+|++++|++|+.||.|++||+.+++ ....+.+|... ..|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3577888888888899999999999999999877 46777766411 579999999998
Q ss_pred CEEEEEECCCcEEEEEccCCccceeecc--cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311 619 CLLAVSTNDNGIKILATSDGIRLLRTFE--NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 696 (1102)
Q Consensus 619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1102)
..|++++.||.|++|++.++......+. .+...... .....
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~----------------------------- 150 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD--------PTTVT----------------------------- 150 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC----------------CCCCC-----------------------------
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccC--------ccccc-----------------------------
Confidence 8999999999999999977532211111 00000000 00000
Q ss_pred cccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCC
Q 001311 697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 776 (1102)
Q Consensus 697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 776 (1102)
... +-.....+ |.+.. ...+.+ ..+|...|.+++|+|+++.++++ .|+.|++||+.....
T Consensus 151 ----~~~-~~~~~~~~----~~~~~----~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~--- 210 (447)
T 3dw8_B 151 ----TLR-VPVFRPMD----LMVEA----SPRRIF---ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR--- 210 (447)
T ss_dssp ----SCC-CCEEEEEE----EEEEE----EEEEEE---CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE---
T ss_pred ----ceE-eccccchh----eeeec----cceEEe---ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---
Confidence 000 00000000 00000 000000 13488999999999999999998 899999999853110
Q ss_pred CcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCce----eeeecCCCC--
Q 001311 777 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKT----MATFMPPPP-- 848 (1102)
Q Consensus 777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~----~~~~~~~~~-- 848 (1102)
...+.+.... .+ .+|...|.+++|+|++ ++|++++ ||.|++||+.+++. ...+.+|..
T Consensus 211 -------~~~~~~~~~~-----~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 211 -------SFNIVDIKPA-----NM--EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS 276 (447)
T ss_dssp -------EEEEEECCCS-----SG--GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred -------eeeeeecccc-----cc--cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence 0011111111 11 1388999999999998 9999999 99999999999887 788888876
Q ss_pred ----------CeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccc---------------eeEEEecCC
Q 001311 849 ----------AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRI---------------TGLAFSHAL 902 (1102)
Q Consensus 849 ----------~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V---------------~~l~~s~d~ 902 (1102)
.|.+++|+| ++++|++++. |.|++||+.+ ++++..+.+|...+ ..++|+|++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp -CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 899999999 9999999998 9999999997 88888998886432 249999999
Q ss_pred CEEEEEcCCCcEEEEEcCCCcccceeeeec-------CC-----------------CCCCCCCCCcEEEEccCCcEEEEE
Q 001311 903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQI-------PT-----------------GRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-------~~-----------------~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
++|++++.||.|++||+.+++......... .. ........|..++|+|++.+||++
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence 999999999999999999876432110000 00 000112468899999999999998
Q ss_pred eCCeEEEEEcC
Q 001311 959 HETQLAIFETT 969 (1102)
Q Consensus 959 ~d~~i~iwd~~ 969 (1102)
..+.+++|..+
T Consensus 435 ~~~~~~~~~~~ 445 (447)
T 3dw8_B 435 TTNNLYIFQDK 445 (447)
T ss_dssp CSSCEEEEECC
T ss_pred ecceeeeeccc
Confidence 77789999754
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.7e-29 Score=287.01 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=226.2
Q ss_pred EEEEEccCCceEEE-eecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCe
Q 001311 743 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 820 (1102)
Q Consensus 743 ~~~~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~ 820 (1102)
..++++|+...+++ ++.||.|++|++.... ..........+|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~---------------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTG---------------------RVDKNVPLVCGHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCE---------------------ECCTTCCCBCCCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCC---------------------CCCCCCceEecCCCCEEEEEeCCCCCCE
Confidence 35778888765554 6779999999974321 11000001123899999999999 9999
Q ss_pred EEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCC-cEEEEEeCCCcEEEEEeecceeeeee--ccc
Q 001311 821 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 889 (1102)
Q Consensus 821 las~s-dg~I~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h 889 (1102)
|++++ ||.|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 999999999987 56788999999999999999 65 79999999999999999999999999 889
Q ss_pred cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEE
Q 001311 890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI 965 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~i 965 (1102)
...|++++|+|++++|++++.|+.|++||+.+++... ....+|.. ..+..++|+|++++|+++ .|+.|++
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA----EKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE----EEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee----eeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999999865321 11133332 247899999999999997 6899999
Q ss_pred EEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE-EeCCCeEEEEEcCCcee-EEEeCCCcccCCCCCCCcccceEEEe
Q 001311 966 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus 966 wd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
||+.+++.........|...|.+++|+||+++|++ ++.||.|++||+.+++. +..+.. +. | ...+. +++|
T Consensus 250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~---~-~~~v~--~~~~ 321 (402)
T 2aq5_A 250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FS---S-KESQR--GMGY 321 (402)
T ss_dssp EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--EC---C-SSCCS--EEEE
T ss_pred EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cc---c-CCccc--ceEE
Confidence 99998765222222356788999999999999975 55799999999999884 433330 00 1 22255 8999
Q ss_pred cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+| ++.+++ +.|+.+++|++.+++
T Consensus 322 sp-~~~~~~--s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 322 MP-KRGLEV--NKCEIARFYKLHERK 344 (402)
T ss_dssp CC-GGGSCG--GGTEEEEEEEEETTE
T ss_pred ec-ccccce--ecceeEEEEEcCCCc
Confidence 99 566766 467899999998875
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-28 Score=280.40 Aligned_cols=250 Identities=12% Similarity=0.079 Sum_probs=207.8
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEeCCCcEEEEEeec
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~ 879 (1102)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 9999999998 6677788999999999999997 5 89999999999999999999
Q ss_pred ce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-----
Q 001311 880 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 950 (1102)
Q Consensus 880 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----- 950 (1102)
++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+........... .+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE---ECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe---cCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 99999999999999999988654332222 2333 3789999999
Q ss_pred --------CCcEEEEE-eCCeEEEEEcCCceEe--eeeccCCCCCCeeEEEEcCC---CcEEEEEeCCCeEEEEEcCCce
Q 001311 951 --------DQIHFLVV-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 951 --------dg~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~spd---~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
++.+++++ .|+.|++||+.++... ......+|...|.+++|+|+ +++|++++.||.|+|||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 68999985 8999999999876422 11223478999999999999 8999999999999999999874
Q ss_pred eE--EEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1017 LR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1017 ~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.. ..+. ...+| ...+. +++|+| ++.+|++++.||.|++|++..+.
T Consensus 243 ~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 243 GPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred ccceeeee----ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 21 1111 11112 22244 899999 68999999999999999998654
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=8.3e-28 Score=254.29 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=173.5
Q ss_pred cccceEEEEEccC----CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311 738 RATKISRLIFTNS----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 813 (1102)
Q Consensus 738 ~~~~i~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~ 813 (1102)
+...|..++|+|| ++.++.++.+ +.+|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 3467889999999 8888887744 556643
Q ss_pred EecCCCeEEEEe---CCeEEEEEc-CCCceeeeecCCCCCeeEEEEec--CCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311 814 LSKNDSYVMSAS---GGKISLFNM-MTFKTMATFMPPPPAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 814 ~s~d~~~las~s---dg~I~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 887 (1102)
++++.+.++. |+.|++|++ .+++.+..+.+|...++.++|++ .++.+||+|+.|++|+|||+.++++++++.
T Consensus 143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence 3566666643 899999999 45888888888999998888887 367999999999999999999999999998
Q ss_pred ccc---ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311 888 GHS---KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 964 (1102)
Q Consensus 888 ~h~---~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~ 964 (1102)
+|. ..+.+++|+|||+++++++.+.. +|++.++ +.|++|+
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~laSG-----------------------------------s~D~tIk 263 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCA--KESESLR-----------------------------------SPVFQLI 263 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC-------------------------------------------------CCEEEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCC--cceeecc-----------------------------------CCCcEEE
Confidence 754 35777899999999988876543 3544332 2567888
Q ss_pred EEEcCCceEeeeec---cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEE
Q 001311 965 IFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1041 (1102)
Q Consensus 965 iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 1041 (1102)
+||..+++.+..+. ..+|...+.+..++ +.++|+++.|++|+|||+.+++++.++. +|....+. .+
T Consensus 264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~v 332 (356)
T 2w18_A 264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FV 332 (356)
T ss_dssp EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EE
T ss_pred EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EE
Confidence 89888888776542 34676666555554 8899999999999999999999999887 44444333 58
Q ss_pred EecCCCCCEEEEEecCCcEEEEec
Q 001311 1042 AAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1042 ~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
+|+| |+++|++|+.|++|+|||+
T Consensus 333 afSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECS-SSSEEEEECTTSCEEEEEE
T ss_pred EECC-CCCEEEEEECCCcEEEecC
Confidence 9999 6899999999999999996
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2e-27 Score=275.98 Aligned_cols=356 Identities=15% Similarity=0.215 Sum_probs=254.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE---EccCCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPDGS 421 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~ 421 (1102)
....|..+.|+|....++..+.......++... ....+..++ |+|+++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 455788889999765444443322223333221 122445555 666655
Q ss_pred eEEEE--------------ECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311 422 LFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 422 ~las~--------------~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++++++.|+.|++||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 55443 333433555543 342 2233334444 4566999999665 78888899999999999
Q ss_pred CCeeeE-----EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311 486 NGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560 (1102)
Q Consensus 486 ~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 560 (1102)
+++.+. .+.+|.+.|.+++| .+++.++++++.|+.|++||+++.+....+..+...+.+++|++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR------- 223 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT-------
T ss_pred CCeEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC-------
Confidence 999887 44578999999998 4556899999999999999999877776666666556666665555
Q ss_pred ccCceeEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--------CCCcEE
Q 001311 561 RKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--------NDNGIK 631 (1102)
Q Consensus 561 ~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~ 631 (1102)
+.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .||.|+
T Consensus 224 --------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~ 286 (433)
T 3bws_A 224 --------------DLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLG 286 (433)
T ss_dssp --------------TEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred --------------CEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence 4564 45589999999999999888776543 488999999999999887 366777
Q ss_pred EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311 632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 711 (1102)
Q Consensus 632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 711 (1102)
+||+.++ +....+
T Consensus 287 ~~d~~~~-~~~~~~------------------------------------------------------------------ 299 (433)
T 3bws_A 287 IYSMDKE-KLIDTI------------------------------------------------------------------ 299 (433)
T ss_dssp EEETTTT-EEEEEE------------------------------------------------------------------
T ss_pred EEECCCC-cEEeec------------------------------------------------------------------
Confidence 7776544 111000
Q ss_pred CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311 712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 791 (1102)
Q Consensus 712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 791 (1102)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCeeEEEEecCCCeEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-
Q 001311 792 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD- 868 (1102)
Q Consensus 792 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la-s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~- 868 (1102)
.+...+.+++|+|+++.++ +++ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++.
T Consensus 300 ------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~ 365 (433)
T 3bws_A 300 ------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRG 365 (433)
T ss_dssp ------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECC
T ss_pred ------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecC
Confidence 0122355677788886554 434 7899999999888877776 667799999999 8888888876
Q ss_pred --------------CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC
Q 001311 869 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 921 (1102)
Q Consensus 869 --------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~ 921 (1102)
||.|++||+.+++.+..+..+ ..+.+++|+||+++|++++. |+.|++|+++.
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 579999999999988888764 56899999999999988765 99999999864
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.4e-27 Score=269.84 Aligned_cols=227 Identities=15% Similarity=0.132 Sum_probs=179.9
Q ss_pred CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE-EEEECCCeEEEEEc
Q 001311 359 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 437 (1102)
Q Consensus 359 ~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~vwd~ 437 (1102)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999987763 44454 58999999999987 56778999999999
Q ss_pred cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEE-EE
Q 001311 438 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 516 (1102)
Q Consensus 438 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s 516 (1102)
.+++.+.. +..| ..|.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+ ++++.+ ++
T Consensus 62 ~~~~~~~~---~~~~-~~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIAT---VPAG-SSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVT 133 (391)
T ss_dssp TTTEEEEE---EECS-SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEE
T ss_pred CCCeEEEE---EECC-CCccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEE
Confidence 99886653 4434 38999999999995 4466777899999999999999888755 467888875 455666 78
Q ss_pred EeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE-EEEeCCCeEEEEECCCcc
Q 001311 517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 595 (1102)
Q Consensus 517 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 595 (1102)
++.|+.|++||+.+++....+..+ . .+..++|+|+++++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-R---------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-S---------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-C---------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 888999999999876655444332 2 23445555555566 567789999999999998
Q ss_pred eEEEEcCCCCCCCcCeEEEcCCCCEEEEEE---CCCcEEEEEccCC
Q 001311 596 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 638 (1102)
Q Consensus 596 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~ 638 (1102)
.+..+.... .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888876433 578899999999999888 6899999998766
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.4e-28 Score=284.51 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=211.2
Q ss_pred ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4566789999999999998655799999999999999976210000 0000001114679999999999999
Q ss_pred CCC-eEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---eee
Q 001311 419 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 490 (1102)
Q Consensus 419 dg~-~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~~ 490 (1102)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223457789999999999995444 7999999999999999987 577
Q ss_pred EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569 (1102)
Q Consensus 491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~ 569 (1102)
..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999965432 47999999999999999974 44556666666666666666654
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC--------------cceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEE
Q 001311 570 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 634 (1102)
Q Consensus 570 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd 634 (1102)
.+|++++.|+.|++||+.. ...+..+.+| ...|.+++|+|++. +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 4689999999999999986 2445555544 44799999999999 999999999999999
Q ss_pred ccCC
Q 001311 635 TSDG 638 (1102)
Q Consensus 635 ~~~~ 638 (1102)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8654
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8e-29 Score=306.76 Aligned_cols=253 Identities=17% Similarity=0.210 Sum_probs=205.6
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
..+|.+.|++++|+|+|++ +++|+.||+|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence 4569999999999999996 999999999999999743 3333 47899999999999998
Q ss_pred --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311 420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 493 (1102)
Q Consensus 420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~ 493 (1102)
+++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ +. ++++|+.||.|++||+.++. ....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999999862 233457889999999999999 88 79999999999999999873 45677
Q ss_pred ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCCCe----eeecCCCCeeeEEEEccCCceeee
Q 001311 494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
.+|...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--------------- 206 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW--------------- 206 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---------------
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---------------
Confidence 8899999999997631 5689999999999999999876432 233344444
Q ss_pred ccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcceE---EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311 559 GFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 632 (1102)
+.+++|+|+ ++++++++.||.|++||+.++... .......+...|.+++|+|++++|++++.||.|++
T Consensus 207 ------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 207 ------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp ------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred ------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 455555555 568999999999999999886421 11222334557999999999999999999999999
Q ss_pred EEccCC
Q 001311 633 LATSDG 638 (1102)
Q Consensus 633 wd~~~~ 638 (1102)
|++.++
T Consensus 281 wd~~~~ 286 (753)
T 3jro_A 281 WKENLE 286 (753)
T ss_dssp CBCCSS
T ss_pred EecCCC
Confidence 999865
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.8e-27 Score=250.30 Aligned_cols=294 Identities=14% Similarity=0.128 Sum_probs=211.4
Q ss_pred CEEEEEEc-CCCCeeEEEEecCCCcEEEEeCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 455 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 455 ~V~~v~~s-~d~~~~~l~s~~~d~~i~vWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
.+.++-|- +..+.+.+++++. ..|++|+..++ ++++++.+|+.+|..+.+.++.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35666664 4455556777775 59999999999 8999999999999999987655432222222
Q ss_pred CCCeeeecCCCCeeeEEEEccC----CceeeeccccCceeEEEEcCCCCEEEEEe--CCCeEEEEEC-CCcceEEEEcCC
Q 001311 531 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD 603 (1102)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~ 603 (1102)
..+...|.+++++|+ ++.+..+.+...+ ..+ ++++.+.+++ .|+.|++|++ .+++.+..+..+
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v--~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGNIKAV--LGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEEEEEE--EEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred -------cccccceEEEEECCCccccccEEEeCCCeEEE--Eec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 122346788999999 7777766544334 344 5566555543 5999999999 558888887777
Q ss_pred CCCCCcCeEEEcC---CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311 604 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 680 (1102)
Q Consensus 604 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1102)
.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------ 224 (356)
T 2w18_A 178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------ 224 (356)
T ss_dssp CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence 55 677889998 7899999999999999999998 56665543211
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311 681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
+...+.+++|+|+|..+++++.+
T Consensus 225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence 22357788999999887776643
Q ss_pred ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311 761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 839 (1102)
Q Consensus 761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~ 839 (1102)
.. +| .+++|+ |++|++||..+++.
T Consensus 248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence 11 12 356777 89999999999988
Q ss_pred eeee-----cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce-eEEEecCCCEEEEEcCCCc
Q 001311 840 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ 913 (1102)
Q Consensus 840 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~ 913 (1102)
+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|+|||++|++|+.|++
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 7665 466666444333 467999999999999999999999999999988766 5899999999999999999
Q ss_pred EEEEEc
Q 001311 914 LCVWSS 919 (1102)
Q Consensus 914 i~vwd~ 919 (1102)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999986
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=277.48 Aligned_cols=262 Identities=15% Similarity=0.053 Sum_probs=199.6
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe---eEEeeeeeee---ccCC--------------------------
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA-------------------------- 394 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~---~~~~~~~~~~---~~~~-------------------------- 394 (1102)
.++.+++|+|||++ |+++ .++.|++||+.+++ .+.......- ....
T Consensus 5 ~p~~~v~~s~dg~~-l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSL-VFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSE-EEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCE-EEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 57899999999994 5554 46899999999998 4433211000 0000
Q ss_pred ------CCccccccccCCCCCCeEEEEEccCCCeE-EEEECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCCC
Q 001311 395 ------CSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPN 465 (1102)
Q Consensus 395 ------~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~ 465 (1102)
...........+|.+.|.+++|+|+|++| |+|+.||.|+|||+. +++.+..+. ...|...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCC
Confidence 00000111234677899999999999996 889999999999999 777665322 23677899999999999
Q ss_pred CeeEEEEecCCCcEEEEeCCCCeeeE----EeecCCCCeEEEeeeec-CCccEEEEEeCCCeEEEEEcCCCCCeee-ecC
Q 001311 466 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA 539 (1102)
Q Consensus 466 ~~~~l~s~~~d~~i~vWd~~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~ 539 (1102)
+ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++..... +..
T Consensus 162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9 79999999999999999887554 78899999999999765 2257999999999999999998776655 335
Q ss_pred CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------
Q 001311 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------------- 603 (1102)
Q Consensus 540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------- 603 (1102)
|...|.+++|+ ++++|++++.|+.|++||+.+++++..+..+
T Consensus 240 h~~~v~~~~~s----------------------d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 240 HKHFVSSICCG----------------------KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp CSSCEEEEEEC----------------------STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred CCCceEEEEEC----------------------CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence 55555555554 4468999999999999999999988887632
Q ss_pred -------CCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEc
Q 001311 604 -------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 635 (1102)
Q Consensus 604 -------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 635 (1102)
.....+.+++|+|++++|++++ .++.|++|++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999999 8999999998
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=9.2e-27 Score=266.24 Aligned_cols=329 Identities=8% Similarity=0.094 Sum_probs=241.8
Q ss_pred CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
.++++++.|+.|++||+.+++.+. .+.+| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~-~~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecC-CCcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888999999999999987665 35555 45899999999994 45788899999999999999999988665 89
Q ss_pred EEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE-E
Q 001311 501 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 578 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 578 (1102)
.+++|+ +++++| ++++.|+.|++||+.+++....+..+ . .+..++|+|+++.+ +
T Consensus 77 ~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~---------------------~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K---------------------SPLGLALSPDGKKLYV 132 (391)
T ss_dssp EEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S---------------------SEEEEEECTTSSEEEE
T ss_pred cceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C---------------------CcceEEECCCCCEEEE
Confidence 999985 455666 55667899999999876554443322 2 33455556666666 6
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 657 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 657 (1102)
+++.++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77789999999999999888887653 36889999999988 56677899999998665 1111100
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311 658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737 (1102)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 737 (1102)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223455666777
Q ss_pred CCeEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeeeecccccc
Q 001311 818 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 892 (1102)
Q Consensus 818 ~~~las~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~ 892 (1102)
++++++++ ++.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 76666654 5789999998888888887655 489999999 77766 67788999999999999988888766544
Q ss_pred ce---eEE------------EecCC----------CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311 893 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 893 V~---~l~------------~s~d~----------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
.. .+. |+.+. ..+...+.|.++++|++..+... .. ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence 21 122 33221 34666677889999999775421 11 123467
Q ss_pred EccCCcEEEE
Q 001311 948 FHQDQIHFLV 957 (1102)
Q Consensus 948 ~spdg~~l~~ 957 (1102)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999999875
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.6e-28 Score=279.93 Aligned_cols=267 Identities=10% Similarity=-0.028 Sum_probs=187.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-----
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 418 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 418 (1102)
.|...+....+++++. ++|+|+.|++|+|||+.+++......+ ..+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 4555566666667776 599999999999999998876543222 25789999999999998
Q ss_pred ---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---
Q 001311 419 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--- 492 (1102)
Q Consensus 419 ---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~--- 492 (1102)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999999876554 46678999999999999865 799999999999999998765432
Q ss_pred ----------------------eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc
Q 001311 493 ----------------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 550 (1102)
Q Consensus 493 ----------------------~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1102)
..+|...|.++.|+ .+++..|++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 23677888888875 4677899999999999999999888777777777778888888
Q ss_pred cCCceeeeccccCceeEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311 551 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 629 (1102)
Q Consensus 551 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 629 (1102)
++++.... ....+.++.+.+.+. ++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++|++++.+|
T Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence 77643221 122233333444444 556677899999999999988877765544 799999999999999998765
Q ss_pred EEEEEc
Q 001311 630 IKILAT 635 (1102)
Q Consensus 630 i~iwd~ 635 (1102)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-27 Score=275.30 Aligned_cols=248 Identities=9% Similarity=0.037 Sum_probs=202.7
Q ss_pred CCCCCeeEEEEecCCCeE-EEEe-CCeEEEEEcC--CCceeeeec--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 804 NPEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~l-as~s-dg~I~iwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
+|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++|+| ++++|++|+.||.|++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence 366789999999999996 7887 8999999999 888888876 5678899999999 8999999999999999999
Q ss_pred ecceeee----eeccccccceeEEEecC---CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 878 RVDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 878 ~~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++.. .....+|. ..|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s- 250 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG- 250 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-
Confidence 8876554 78899999999999999 999999999999999999886542 22234554 489999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceEeeeeccC-----------------------CCCCCeeEEEEcCCCcEEEEEe-CCC
Q 001311 951 DQIHFLVV-HETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDA 1005 (1102)
Q Consensus 951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~l~~spd~~~l~s~s-~Dg 1005 (1102)
++++|+++ .|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+
T Consensus 251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~ 330 (450)
T 2vdu_B 251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK 330 (450)
T ss_dssp STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence 99999994 8999999999999988776521 2246799999999999999999 899
Q ss_pred eEEEEEc--CCc---eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-------CCcEEEEeccCCCcccc
Q 001311 1006 TVCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1006 ~I~vwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~~ 1073 (1102)
.|+||++ .++ +.+..+. +| ..+. +++|+| + .++++.+. ++.|.+|.+....+.|.
T Consensus 331 ~i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 331 CIIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 9999999 665 5565555 22 1244 899999 4 45555433 56689999877655553
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.1e-27 Score=265.11 Aligned_cols=297 Identities=15% Similarity=0.200 Sum_probs=209.2
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd 483 (1102)
..+|...|.+++|||||++||+|+.|+ ++|||+.+++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998775 78999987654431 22335888999998884 446788889999999
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
+.+++++..+. |...|.+++++ ++ .++.+ .|+.|++||+.+. +.+..+.. ..
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~--~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~------------------ 140 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLS--RE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FG------------------ 140 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEEC--SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EE------------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEc--CC--EEEEE-EcCEEEEEECCCCceeeEEecc---CC------------------
Confidence 99999999987 67789999874 33 34444 4789999999876 44433322 11
Q ss_pred CceeEEEEcCCCCEEEE--EeCCCeEEEEECCCcc----------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 563 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
..+++++ .+++. ++.||.|++||+.++. .+..+.+| ...|.+++|+|+|++|+++
T Consensus 141 ---~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 141 ---GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp ---EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred ---ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence 1233333 34555 5789999999999865 25666655 4489999999999999999
Q ss_pred ECCCc-EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311 625 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 703 (1102)
Q Consensus 625 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1102)
+.||+ |++||+.++ +.+..+.
T Consensus 214 s~d~~~v~iwd~~~~-~~~~~~~--------------------------------------------------------- 235 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG-VLVREFR--------------------------------------------------------- 235 (355)
T ss_dssp ETTCSEEEEEETTTC-CEEEEEE---------------------------------------------------------
T ss_pred eCCCCEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence 99998 999999887 3333332
Q ss_pred ccccccCCCccceEecccCCCCCccccccCCCcc-cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccc-
Q 001311 704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA- 781 (1102)
Q Consensus 704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~- 781 (1102)
.+ |...|.+++|+|+|++|++++.|+.|++|++.............
T Consensus 236 --------------------------------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~ 283 (355)
T 3vu4_A 236 --------------------------------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW 283 (355)
T ss_dssp --------------------------------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred --------------------------------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence 01 66789999999999999999999999999986543211110000
Q ss_pred ---cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC
Q 001311 782 ---SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 837 (1102)
Q Consensus 782 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~ 837 (1102)
......|....-. +. .........++|++|+++|++++ ||.+++|++..+
T Consensus 284 ~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 284 INMKYFQSEWSLCNFK-----LS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EECCCCCCSSCSEEEE-----CC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eeccccccccceeEEE-----ec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0000111111000 10 01233457799999999999998 999999998653
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.8e-27 Score=272.71 Aligned_cols=296 Identities=13% Similarity=0.107 Sum_probs=227.7
Q ss_pred CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEE--EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
..+.+++|+|++.++++++.|+.|++||+.+++...... .+.+|.+.|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888889999999999988654221 2458899999999999998 899999999999999999
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
++.+..+..|...+.+++|++ ++.++ ++++.|+.|++||+++++....+..+ .. +
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~---------------------~ 256 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL---------------------P 256 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE---------------------E
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC---------------------c
Confidence 999999999999999999864 44566 56668999999999876554443322 22 4
Q ss_pred eEEEEcCCCCEEEEEe--------CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEcc
Q 001311 566 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 636 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 636 (1102)
..++++|+++++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 4455555556777776 58899999999998877764322 47889999999755 556889999999987
Q ss_pred CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311 637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 716 (1102)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 716 (1102)
++ +....+.
T Consensus 334 ~~-~~~~~~~---------------------------------------------------------------------- 342 (433)
T 3bws_A 334 EK-KVQKSIP---------------------------------------------------------------------- 342 (433)
T ss_dssp TT-EEEEEEE----------------------------------------------------------------------
T ss_pred CC-cEEEEec----------------------------------------------------------------------
Confidence 66 2222111
Q ss_pred EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311 717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 796 (1102)
Q Consensus 717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1102)
+...+.+++|+|+|+.+++++.+..
T Consensus 343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 2345778999999988877765411
Q ss_pred ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CCcEEE
Q 001311 797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 874 (1102)
Q Consensus 797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~v 874 (1102)
. .+..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 --------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 --------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp --------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred --------c----------cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 0 0223455666 89999999999998888876 45799999999 8888888775 999999
Q ss_pred EEeec
Q 001311 875 YNVRV 879 (1102)
Q Consensus 875 wd~~~ 879 (1102)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99863
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6.4e-28 Score=274.88 Aligned_cols=291 Identities=13% Similarity=0.077 Sum_probs=186.7
Q ss_pred cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceee--eEEEeeccccCEEEEEEcC--------CCCeeEEEEe
Q 001311 404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITC 473 (1102)
Q Consensus 404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~ 473 (1102)
...|...+....+++++.+||+|+.|++|+|||..+++... ....+.+|.+.|++|+|+| |++ +|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~ 162 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASV 162 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEE
Confidence 34566666667777889999999999999999999987543 2334789999999999998 777 89999
Q ss_pred cCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311 474 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553 (1102)
Q Consensus 474 ~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1102)
+.|++|+|||+.++.++..+.+|...|.+++|++.. ..+|++++.||+|++||+.++........+.......
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------ 235 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------ 235 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC------
T ss_pred ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce------
Confidence 999999999999999988888899999999997532 3589999999999999998866544332221111000
Q ss_pred ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCCcEEE
Q 001311 554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKI 632 (1102)
Q Consensus 554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i 632 (1102)
..+...... .......++...+.++.|+ ++++.|++++.|+++++
T Consensus 236 -----------------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v 281 (393)
T 4gq1_A 236 -----------------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR 281 (393)
T ss_dssp -----------------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred -----------------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence 011111100 0111112234468889987 79999999999999999
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
||+..+ .....+..
T Consensus 282 wd~~~~-~~~~~l~~----------------------------------------------------------------- 295 (393)
T 4gq1_A 282 WNLFAN-NDYNEISD----------------------------------------------------------------- 295 (393)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EECccC-CCCceEee-----------------------------------------------------------------
Confidence 998776 22222211
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 792 (1102)
+...+..+.+.++++.+..
T Consensus 296 -------------------------~~~~~~~~~~~~~~~~~~~------------------------------------ 314 (393)
T 4gq1_A 296 -------------------------STMKLGPKNLLPNVQGISL------------------------------------ 314 (393)
T ss_dssp ---------------------------------CCSCSEEEECS------------------------------------
T ss_pred -------------------------ecCccccEEEccccccccc------------------------------------
Confidence 2222233333333321110
Q ss_pred ccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311 793 GIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 870 (1102)
Q Consensus 793 ~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 870 (1102)
+...+..+.+.+ ++.++++|+ ||.|++||+.+++....+.+|...|.+++|+| ||++||+++++|
T Consensus 315 ------------~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G 381 (393)
T 4gq1_A 315 ------------FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS 381 (393)
T ss_dssp ------------SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE
T ss_pred ------------cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC
Confidence 111122222223 444666777 89999999999999888888999999999999 999999998766
Q ss_pred cEEEEEee
Q 001311 871 SIQIYNVR 878 (1102)
Q Consensus 871 ~v~vwd~~ 878 (1102)
+.+|.+.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 6666554
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.6e-27 Score=262.47 Aligned_cols=252 Identities=12% Similarity=0.119 Sum_probs=178.3
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 422 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 422 (1102)
..|.+.|++++|||||++ |++|+.|+ ++|||+.+++.... .+...+..+++++++++
T Consensus 16 ~~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCE
Confidence 458999999999999995 88888765 78999988766542 11125888999999998
Q ss_pred EE-EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCe
Q 001311 423 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 500 (1102)
Q Consensus 423 la-s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v 500 (1102)
++ +++.|++|+|||+.+++.+.. +. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~---~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSR---IK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEE---EE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEEE---EE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 85 577789999999999987653 43 67799999998764 3333 3789999999998 77766664 33
Q ss_pred EEEeeeecCCccEEEE--EeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 501 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 501 ~~v~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
..+++++ .+++. |+.||.|++||+.+........... ....+.|. ...+.+| ...+.+++|+|++++|+
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~---~~~~~~p~-~~~~~~h-~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV---QQKAILGK-GVLIKAH-TNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC---------------------C-CEEECCC-SSCEEEEEECTTSSEEE
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccc---cccccCcc-cEEEEcc-CCceEEEEECCCCCEEE
Confidence 3344433 34555 6889999999998754211000000 00000000 0222222 23566666677777899
Q ss_pred EEeCCCe-EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 579 AAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 579 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.|++ |++||+.+++++..+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus 212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9999998 99999999999999873113457999999999999999999999999999765
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-27 Score=265.02 Aligned_cols=280 Identities=8% Similarity=0.051 Sum_probs=214.8
Q ss_pred EEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC
Q 001311 460 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 539 (1102)
Q Consensus 460 ~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1102)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 4456677 79999999999999999999988886 456777776543 9999999999999764
Q ss_pred CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--C
Q 001311 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 617 (1102)
Q Consensus 540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 617 (1102)
+.+.+||+.+++.+..+.. .+...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence 2567899988887766652 2234799999999 9
Q ss_pred CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCcc
Q 001311 618 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 697 (1102)
Q Consensus 618 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1102)
++++++++.||.|++||+.++. ......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~--------------------------------------------------- 166 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS--------------------------------------------------- 166 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence 9999999999999999998772 222111
Q ss_pred ccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCC
Q 001311 698 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 777 (1102)
Q Consensus 698 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 777 (1102)
..+...|.+++|+|+|.++++++.|+.|++||+..
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~------- 201 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS------- 201 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 01344688999999999999999999999998743
Q ss_pred cccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecC---CCCCee--E
Q 001311 778 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 852 (1102)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~---~~~~i~--~ 852 (1102)
+......+. .+|...|.+++|+|++.+|++++++.|++||+++++.+..+.. |...+. +
T Consensus 202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222201111 1388999999999999999999977999999999887766554 334444 6
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEEeecceeeeeeccccccceeEEEec---CCCEEEEEcCCCcEEEEEcCC
Q 001311 853 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +.+.|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 9999999998 999999999765432222 5677888988 889999999999999886443
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=266.02 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=158.0
Q ss_pred CCCCeeEEEEec--CCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 805 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 805 ~~~~i~~l~~s~--d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
|...|.+++|+| +++++++++ ||+|++||+.+++....... |...|++++|+| ++.+|++|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 99999999999998776644 455899999999 9999999999999999999999
Q ss_pred eee-eeecc-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCC--cEEEEccCCcEEE
Q 001311 881 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 956 (1102)
Q Consensus 881 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~spdg~~l~ 956 (1102)
+.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++... .+.....+. ..+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 4599999999865421 111111111 122 4699999999999
Q ss_pred EE-e-CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC---CCcEEEEEeCCCeEEEEEcCCc
Q 001311 957 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 957 ~~-~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
++ . |+.+++|++.+....... .++..++|++ +.+.+++++.||.++++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 94 4 999999999765432221 4677888998 9999999999999998865443
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-27 Score=293.67 Aligned_cols=251 Identities=12% Similarity=0.077 Sum_probs=209.3
Q ss_pred CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEeCCCcEEEEEee
Q 001311 804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 878 (1102)
Q Consensus 804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~ 878 (1102)
+|.+.|++++|+|++++|++|+ ||.|++||+. ++.....+.+|...|++++|++ + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 5677888999999999999998 6 8999999999999999999
Q ss_pred cce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc----
Q 001311 879 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 950 (1102)
Q Consensus 879 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---- 950 (1102)
+++ .+..+.+|...|++++|+|+ +++|++++.||+|++||+.++........ .+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence 986 77888899999999999999 99999999999999999988644332222 2333 4789999999
Q ss_pred ---------CCcEEEEE-eCCeEEEEEcCCc----eEeeeeccCCCCCCeeEEEEcCC---CcEEEEEeCCCeEEEEEcC
Q 001311 951 ---------DQIHFLVV-HETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus 951 ---------dg~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~~spd---~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
++.+++++ .||.|++||+.++ .....+. +|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 58888885 8999999999877 3444443 88999999999999 9999999999999999999
Q ss_pred CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1014 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1014 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
++......... ...+| ...+. +++|+| ++.+|++|+.||.|++|++.++.
T Consensus 238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532211111 11122 22355 899999 68999999999999999998654
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.4e-26 Score=265.60 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=154.1
Q ss_pred CCeEEEEEccCC----------CeEEEEEC----CCeEEEEEcc----------------CC--------ceeeeEEEee
Q 001311 409 VSVNRVIWSPDG----------SLFGVAYS----RHIVQIYSYH----------------GG--------DEVRQHLEID 450 (1102)
Q Consensus 409 ~~V~~l~~spdg----------~~las~~~----d~~v~vwd~~----------------~~--------~~~~~~~~l~ 450 (1102)
.+..++.|.|+. .+|++|+. ...|.++++. ++ ..........
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 466788888865 46777754 3467777653 00 0001123456
Q ss_pred ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC----------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC
Q 001311 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD 520 (1102)
Q Consensus 451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d 520 (1102)
+|.+.|++++|+|++.. +|++++.||.|++||+.+ ...+..+.+|...|.+++|++... .+|++|+.|
T Consensus 126 ~h~~~v~~l~~~p~~~~-~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNAC-VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-GYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEETTEEE-EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-TEEEEECTT
T ss_pred cCCCcEEEEEECCCCCc-EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-CeEEEEeCC
Confidence 89999999999998443 799999999999999987 677889999999999999965432 299999999
Q ss_pred CeEEEEEcCCCCC-------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001311 521 GKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMD 592 (1102)
Q Consensus 521 g~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 592 (1102)
|.|++||+..... ...+..|.. .+.+++|+| ++..|++++.||.|++||++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~---------------------~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTA---------------------VVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSS---------------------CEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCC---------------------CEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 9999999987432 122333333 455555555 44689999999999999999
Q ss_pred Cc---ceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCC
Q 001311 593 SV---QLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 593 ~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 638 (1102)
++ +.+..+..+. ..|++++|+|++. +|++|+.||.|++||+++.
T Consensus 263 ~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp CSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 87 5666776554 4799999999887 7889999999999998764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=2.4e-25 Score=262.65 Aligned_cols=333 Identities=13% Similarity=0.137 Sum_probs=239.8
Q ss_pred EecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccC-CCCCCeEEEEEccCCCeEEEEECCCeE
Q 001311 354 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHIV 432 (1102)
Q Consensus 354 ~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~v 432 (1102)
|+|++. ++++++.|++|.+||..+++.+.. +. +|. +.+++|||||++|++++.|++|
T Consensus 145 ~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~V 202 (543)
T 1nir_A 145 LDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDARI 202 (543)
T ss_dssp CCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSEE
T ss_pred cCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCeE
Confidence 788886 689999999999999999988764 33 443 8999999999999999999999
Q ss_pred EEEEc--cCCceeeeEEEeeccccCEEEEEEcC----CCCeeEEEEec-CCCcEEEEeCCCCeeeEEeecC---------
Q 001311 433 QIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH--------- 496 (1102)
Q Consensus 433 ~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~~-~d~~i~vWd~~~~~~~~~~~~h--------- 496 (1102)
.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.|||..+++++.++..+
T Consensus 203 ~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~ 276 (543)
T 1nir_A 203 DMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 276 (543)
T ss_dssp EEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred EEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence 99999 7776554 344 445689999999 999 566665 5899999999999999888652
Q ss_pred -C-CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee--eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 497 -E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 497 -~-~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
. ..+.++.++++. ..++++...++.|.+||+.+.+.+. .+. ... .+..+.|+|
T Consensus 277 ~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~---------------------~~~~~~~sp 333 (543)
T 1nir_A 277 HPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP---------------------FLHDGGWDS 333 (543)
T ss_dssp ESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS---------------------SCCCEEECT
T ss_pred ccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCc---------------------CccCceECC
Confidence 2 267788876533 3677888889999999998755432 111 122 333455666
Q ss_pred CCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEE-EcCC-CCEEEEEE-CCCcEEEEEccCCccceeecccc
Q 001311 573 TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFENL 648 (1102)
Q Consensus 573 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 648 (1102)
+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|.+||+.+....
T Consensus 334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~------- 406 (543)
T 1nir_A 334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP------- 406 (543)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT-------
T ss_pred CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc-------
Confidence 666666554 68999999999999988887422111112233 4676 55566654 5799999998663100
Q ss_pred cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311 649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 728 (1102)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 728 (1102)
..
T Consensus 407 -~~----------------------------------------------------------------------------- 408 (543)
T 1nir_A 407 -QY----------------------------------------------------------------------------- 408 (543)
T ss_dssp -TT-----------------------------------------------------------------------------
T ss_pred -hh-----------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCC
Q 001311 729 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 808 (1102)
Q Consensus 729 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 808 (1102)
... .+.. +. .|...
T Consensus 409 ----------~~~--------------------~v~~----------------------------------l~--~~g~~ 422 (543)
T 1nir_A 409 ----------AWK--------------------KVAE----------------------------------LQ--GQGGG 422 (543)
T ss_dssp ----------BTS--------------------EEEE----------------------------------EE--CSCSC
T ss_pred ----------cCe--------------------EEEE----------------------------------EE--cCCCC
Confidence 000 0000 00 03344
Q ss_pred eeEEEEecCCCeEEEEe--------CCeEEEEEcCCCcee-eee--------cCCCCCeeEEEEecCCCcEEEEEe----
Q 001311 809 VPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM---- 867 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s--------dg~I~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~---- 867 (1102)
+..++++||+++|+++. +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~ 501 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGK 501 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCC
Confidence 55677778888877765 468999999988877 443 35577899999999 888888663
Q ss_pred -CCCcEEEEEeecceeeeeeccc
Q 001311 868 -DDSSIQIYNVRVDEVKSKLKGH 889 (1102)
Q Consensus 868 -~dg~v~vwd~~~~~~~~~l~~h 889 (1102)
.|+.|.|||..+++++.+++.+
T Consensus 502 ~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999988854
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.6e-25 Score=264.20 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=244.5
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCeeeE
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQY 491 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~--~~~~~~~ 491 (1102)
+|+|++.++++++.|++|.+||..+++.+.. +. +|. +.+++|+|||+ +|++++.|++|++||+ .+++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~---i~~g~~--~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV---IDTGYA--VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEE---EECSTT--EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEE---EecCcc--cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEE
Confidence 3889999999999999999999999987653 44 443 89999999999 7888899999999999 8999999
Q ss_pred EeecCCCCeEEEeeee--cCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311 492 IFEGHEAPVYSVCPHH--KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568 (1102)
Q Consensus 492 ~~~~h~~~v~~v~~~~--~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 568 (1102)
++. +...+..++|++ ..+|+++++++. +++|.+||..+.+.+..+..+...+....| |....+..+
T Consensus 217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~----------~~~~~v~~i 285 (543)
T 1nir_A 217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY----------HPEPRVAAI 285 (543)
T ss_dssp EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------ESCCCEEEE
T ss_pred EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------ccCCceEEE
Confidence 888 445678888753 006788888874 899999999987776665442110000001 111234555
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEECCCcceEE--EEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceee
Q 001311 569 QFDTTKNR-FLAAGDDFSIKFWDMDSVQLLT--SIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 569 ~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 644 (1102)
.+++++.. +++...++.|.+||+.+.+.+. .+. . ...+.++.|+|+|++++++. .+++|.+||..++ ++...
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~--~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A--APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C--CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c--CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEe
Confidence 66665444 5566789999999998876544 443 2 23578899999999877665 5789999999877 33332
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311 645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 724 (1102)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 724 (1102)
+....
T Consensus 362 i~~g~--------------------------------------------------------------------------- 366 (543)
T 1nir_A 362 VDVGK--------------------------------------------------------------------------- 366 (543)
T ss_dssp EECSS---------------------------------------------------------------------------
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 21000
Q ss_pred CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCC
Q 001311 725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 804 (1102)
Q Consensus 725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 804 (1102)
..
T Consensus 367 ------------------------------------------------------------------------------~p 368 (543)
T 1nir_A 367 ------------------------------------------------------------------------------TP 368 (543)
T ss_dssp ------------------------------------------------------------------------------SB
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCCCeeEEEEecC-CCeEEEEe--CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEe-------
Q 001311 805 PEEAVPCFALSKN-DSYVMSAS--GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM------- 867 (1102)
Q Consensus 805 ~~~~i~~l~~s~d-~~~las~s--dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~------- 867 (1102)
|......+ ++|+ +..++++. |++|.+||+.+ +++++++.+|...+..++|+| ++++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcc
Confidence 22111122 3455 45556653 68888888887 889999999998999999999 999999987
Q ss_pred CCCcEEEEEeecceee-eee--------ccccccceeEEEecCCCEEEEE-----cCCCcEEEEEcCCCcc
Q 001311 868 DDSSIQIYNVRVDEVK-SKL--------KGHSKRITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEK 924 (1102)
Q Consensus 868 ~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~ 924 (1102)
.+++|.|||+.+++.. ..+ ..+...+..++|+|||+.|+++ +.|+.|.|||.++++.
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 2779999999998766 443 4567889999999999998866 2479999999999765
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5e-23 Score=256.53 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=175.4
Q ss_pred CCCeeEEEEecCCCeEEEEEec-CC-----eEEEEeCCCCeeEEeeeeeeec-----cCCCCccccccccCCCCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~-d~-----~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +..................|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999997 777666 88 9999999998765432110000 00000000000000001348899
Q ss_pred EEccCCCeEEEEECCCeEEEEEccCC---ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311 415 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 491 (1102)
Q Consensus 415 ~~spdg~~las~~~d~~v~vwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~ 491 (1102)
+|||||++|++++. +.|++||+.++ +.. .+..|...+.+++|+|||+ .|+.++ ++.|++||+.+++...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 99999999999987 99999999988 433 2667888999999999999 577666 4699999999988776
Q ss_pred EeecCCCC----------------eEEEeeeecCCccEEEEEeCCC---------------------------------e
Q 001311 492 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K 522 (1102)
Q Consensus 492 ~~~~h~~~----------------v~~v~~~~~~~~~~l~s~s~dg---------------------------------~ 522 (1102)
....+... +.++.| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55544432 355676 56778888887765 7
Q ss_pred EEEEEcCC-CCCeeeec--CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-----CCCeEEEEECCCc
Q 001311 523 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV 594 (1102)
Q Consensus 523 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 594 (1102)
|++||+.+ ++...... .+...+ ..++| |+|++|+.++ .+..|++||+.++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYL---------------------ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEE---------------------EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EEEEECCCCCceEEecCCCCcceEE---------------------EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 77888776 54432221 122334 44455 5555666554 3678999999999
Q ss_pred ceEEEEcCCCCC--CCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311 595 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 595 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 636 (1102)
+....+..+... ..+.+++|+|||+++++++.+|.++||.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 877766543311 134689999999988888888888888654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.1e-23 Score=241.26 Aligned_cols=303 Identities=10% Similarity=0.065 Sum_probs=219.9
Q ss_pred cccCEEEEEEcCCCCeeEEEEec----CCC----cEEEEeC--CCCeee--EEeecCCCCeEEEeeeec-----------
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK----------- 508 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~----~d~----~i~vWd~--~~~~~~--~~~~~h~~~v~~v~~~~~----------- 508 (1102)
+...|....|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3457888899999887 676776 567 8999999 999988 558899888887766431
Q ss_pred -CCccEEEEEeCC------CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 509 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 509 -~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
..+..++.++.+ +.|++||++. .....+..+... +.+++|+|+|++|++++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~---------------------v~~~~~Spdg~~la~~s 197 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP---------------------LMSPAWSPDGSKLAYVT 197 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSC---------------------EEEEEECTTSSEEEEEE
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCc---------------------ceeeEEcCCCCEEEEEE
Confidence 013456665554 7999999974 334444434444 44555555556788888
Q ss_pred CCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEE-EEECCCc--EEEEEccCCccceeeccccccccccc
Q 001311 582 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT 655 (1102)
Q Consensus 582 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 655 (1102)
.++ .|++||+.+++... +..+. ..+.+++|+|||+.|+ +++.++. |++||+.++. . ..+
T Consensus 198 ~~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l---------- 262 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV---------- 262 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC----------
T ss_pred ecCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC----------
Confidence 775 99999999988764 33332 3688999999999888 5555554 8888887652 1 111
Q ss_pred CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311 656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 735 (1102)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 735 (1102)
T Consensus 263 -------------------------------------------------------------------------------- 262 (415)
T 2hqs_A 263 -------------------------------------------------------------------------------- 262 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCCceEEEeec-Cc--eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311 736 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 812 (1102)
Q Consensus 736 ~~~~~~i~~~~~s~~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l 812 (1102)
..+...+.+++|+|||+.|+.++. ++ .|.+|++ .++.... +.. +...+.++
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~ 316 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDA 316 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEE
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCe
Confidence 114456788999999998888876 45 4444444 3333222 111 55678899
Q ss_pred EEecCCCeEEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeee
Q 001311 813 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK 885 (1102)
Q Consensus 813 ~~s~d~~~las~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~ 885 (1102)
+|+|||++|++++ + ..|++||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. ++....
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence 9999999999887 4 4799999998876 4455554 899999999 899998888777 79999986 556788
Q ss_pred eccccccceeEEEecCC
Q 001311 886 LKGHSKRITGLAFSHAL 902 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~ 902 (1102)
+.+|.+.|.+++|+|.-
T Consensus 393 l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 393 LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCCSSSEEEEEEECCCC
T ss_pred eeCCCCCCcCCcccccc
Confidence 89999999999999863
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.6e-23 Score=239.78 Aligned_cols=242 Identities=9% Similarity=0.015 Sum_probs=177.6
Q ss_pred CCCeeEEEEecCCCeEEEEEe----cCC----eEEEEeC--CCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 415 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~----~d~----~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 415 (1102)
...+...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988788887 467 8999999 888876432 2556777777777
Q ss_pred Ecc--------------CCCeEEEEECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311 416 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 416 ~sp--------------dg~~las~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
+++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 765 26677776654 799999998654 33 4778999999999999999 6888887
Q ss_pred CC---cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEE-EEeCCCe--EEEEEcCCCCCeeeecCCCCeeeEEEE
Q 001311 476 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 549 (1102)
Q Consensus 476 d~---~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1102)
++ .|++||+.+++.. .+..|...+.+++|+ ++|+.|+ +++.|+. |++||+.++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 566788899999985 5667666 6766654 99999987543 344444444444444
Q ss_pred ccCCceeeeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311 550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
+|++++|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|+|++|++++.
T Consensus 275 ---------------------spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 ---------------------FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp ---------------------CTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred ---------------------CCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 455556777765 44 6888899887643 333332 35778999999999998876
Q ss_pred C---CcEEEEEccCC
Q 001311 627 D---NGIKILATSDG 638 (1102)
Q Consensus 627 d---g~i~iwd~~~~ 638 (1102)
+ +.|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.2e-23 Score=261.34 Aligned_cols=235 Identities=9% Similarity=0.065 Sum_probs=166.5
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC---CeEEEEEccCCCeE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 423 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 423 (1102)
..+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 34678999999995 666 689999999999987654 2455554 49999999999999
Q ss_pred EEEECC---------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311 424 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 424 as~~~d---------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~ 494 (1102)
|+++.+ +.|.+||+.+++. +.+....+|...+.+++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999875 7888999999875 32222335556699999999999 5676665 799999999998877666
Q ss_pred cCCCCe------------------EEEeeeecCCccEEEEEeCC-CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311 495 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555 (1102)
Q Consensus 495 ~h~~~v------------------~~v~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1102)
.+...+ .+++| ++||++|++++.| +.+.+|++...... ....+..+.+.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544433 66777 5667888887754 56777876532211 112244444444442
Q ss_pred eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEECC----
Q 001311 556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 627 (1102)
Q Consensus 556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 627 (1102)
. ..+..|++||+.+++....+..+. +...+..++|+|||++|++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999888656665331 12357789999999988776532
Q ss_pred CcEEEEEccCC
Q 001311 628 NGIKILATSDG 638 (1102)
Q Consensus 628 g~i~iwd~~~~ 638 (1102)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 46777776655
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=8.3e-23 Score=254.53 Aligned_cols=343 Identities=12% Similarity=0.026 Sum_probs=226.1
Q ss_pred CCCeEEEEEccCCCeEEEEEC-CC-----eEEEEEccCCceeeeEEEeeccc------------------------cCEE
Q 001311 408 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 457 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~-d~-----~v~vwd~~~~~~~~~~~~l~~h~------------------------~~V~ 457 (1102)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 899999999875432 33332 2388
Q ss_pred EEEEcCCCCeeEEEEecCCCcEEEEeCCCCe--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee
Q 001311 458 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 535 (1102)
Q Consensus 458 ~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1102)
+++|+|||+ .|++++. +.|++||+.++. .+..+..|...+..++|+ +||++|++++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 5777665 899999999883 455677788889999984 6678888887 4699999998754433
Q ss_pred eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001311 536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF------------------------------- 584 (1102)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------------- 584 (1102)
....+...+.. . -...+. ......+..+.|+|||++|++++.|+
T Consensus 187 ~~~~~~~~~~~---g-~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 187 LTADGSTTIGN---G-IAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp CCCCCCSSEEE---S-CCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred eccCCccceec---c-ccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222211100 0 000000 00001123344555555555554433
Q ss_pred --eEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC-----CCcEEEEEccCCccceeecccccccccccC
Q 001311 585 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS 656 (1102)
Q Consensus 585 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 656 (1102)
.|++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.++ +....+..+
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~-------- 331 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET-------- 331 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE--------
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC--------
Confidence 789999988 876554432233446789999 99999997764 456777776655 111111000
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311 657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 736 (1102)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 736 (1102)
T Consensus 332 -------------------------------------------------------------------------------- 331 (741)
T 2ecf_A 332 -------------------------------------------------------------------------------- 331 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
.++ .-..+..++|+|
T Consensus 332 ----------------------~~~-------------------------------------------~~~~~~~~~~sp 346 (741)
T 2ecf_A 332 ----------------------SPT-------------------------------------------WVPLHNSLRFLD 346 (741)
T ss_dssp ----------------------CSS-------------------------------------------CCCCCSCCEECT
T ss_pred ----------------------CCC-------------------------------------------cCCcCCceEECC
Confidence 000 001234567788
Q ss_pred CCCeEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEE-EEecCCCcEE-EEEeCCC--cEEEEEeec-ceeeeeeccc
Q 001311 817 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH 889 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h 889 (1102)
||+++++++ +|.++||.+. ++. ...+..+...+..+ +|+| +++.| ++++.++ .++||++.. ++....+..
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 888777666 6766666654 344 67777787888887 5999 77655 4555555 899999975 555666765
Q ss_pred cccceeEEEecCCCEEEEEcCC----CcEEEEEcCCC
Q 001311 890 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 922 (1102)
Q Consensus 890 ~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~ 922 (1102)
...+.+++|+|||++|+....+ ..+.+|+..++
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 5668899999999998876544 46889988653
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=9.3e-22 Score=243.47 Aligned_cols=249 Identities=7% Similarity=-0.002 Sum_probs=157.0
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCee--EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
.+..+.|+ |+. +++++.|+ | +||+.+++. ....... .+.. ...........+...|.+++|||| ++++.
T Consensus 27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL 97 (706)
T ss_dssp -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence 35567888 555 55566677 8 999999876 2211000 0000 000000000112257999999999 66666
Q ss_pred EECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----CeeeEEeecCCCC-
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP- 499 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-----~~~~~~~~~h~~~- 499 (1102)
+. ++.|++||+.+++... +..+...+.+++|+|||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 54 5999999999886543 556778899999999999 56664 679999999998 8776655444443
Q ss_pred -------------eEEEeeeecCCccEEEEEe---------------------------------CCCeEEEEEcCCCCC
Q 001311 500 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS 533 (1102)
Q Consensus 500 -------------v~~v~~~~~~~~~~l~s~s---------------------------------~dg~i~~wd~~~~~~ 533 (1102)
+.++.| ++||++|++++ .+..|++||+.++..
T Consensus 170 ~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp EESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred EcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 366777 56778898887 346788898876543
Q ss_pred eeeec--CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEEEcCCCCC
Q 001311 534 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL 606 (1102)
Q Consensus 534 ~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 606 (1102)
..... .+.. .+..++|+|++++|++++.++ .|++||+.+++....+......
T Consensus 248 ~~~~~~~~~~~---------------------~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 248 VYLQTGEPKEK---------------------FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EECCCCSCTTC---------------------EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred EeeccCCCCce---------------------eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 22211 1222 344555666666788776664 8999999998433333211111
Q ss_pred ---CCcCeEEEcC--CCCEEEEEECCCcEEEEEcc
Q 001311 607 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS 636 (1102)
Q Consensus 607 ---~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~ 636 (1102)
..+.+++|+| ||++++++..+|.+++|.+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 1246789999 99999999889999998764
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=5.5e-22 Score=246.46 Aligned_cols=379 Identities=9% Similarity=0.016 Sum_probs=225.4
Q ss_pred CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecccc---CEEEEEEcCCCCeeEEEEecCC---------
Q 001311 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDD--------- 476 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~V~~v~~s~d~~~~~l~s~~~d--------- 476 (1102)
..+.+++|||||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 35788999999998877 789999999999987654 3555654 499999999999 67777654
Q ss_pred CcEEEEeCCCCeeeEEee---cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311 477 KTIKVWDATNGAKQYIFE---GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553 (1102)
Q Consensus 477 ~~i~vWd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1102)
+.|++||+.+++. ..+. +|...+..++| ++||+.|++++. +.|++||+.+++.......+...+
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--------- 157 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--------- 157 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---------
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---------
Confidence 7888999999886 3343 45555777887 466688888876 899999998765544332221111
Q ss_pred ceeeeccc--------cCceeEEEEcCCCCEEEEEeC-CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 554 TRTYQGFR--------KRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 554 ~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
++.|.. ...+..++|+|||++|++++. ++.+.+|++..... .....+..+.|.++|..
T Consensus 158 --~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~---- 224 (723)
T 1xfd_A 158 --IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE---- 224 (723)
T ss_dssp --EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----
T ss_pred --eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----
Confidence 011110 012345666666666766653 34566666532210 01123445555555542
Q ss_pred ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311 625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 704 (1102)
Q Consensus 625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1102)
..+..|++||+.++. ....+..+...
T Consensus 225 ~~~~~l~~~d~~~~~-~~~~l~~~~~~----------------------------------------------------- 250 (723)
T 1xfd_A 225 NPSISLHVIGLNGPT-HDLEMMPPDDP----------------------------------------------------- 250 (723)
T ss_dssp CCEEEEEEEESSSSC-CCEECCCCCCG-----------------------------------------------------
T ss_pred CCeeEEEEEECCCCc-eeEEeeCCccC-----------------------------------------------------
Confidence 122355666654441 11111000000
Q ss_pred cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311 705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 784 (1102)
Q Consensus 705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 784 (1102)
..
T Consensus 251 -------------------------------~~----------------------------------------------- 252 (723)
T 1xfd_A 251 -------------------------------RM----------------------------------------------- 252 (723)
T ss_dssp -------------------------------GG-----------------------------------------------
T ss_pred -------------------------------CC-----------------------------------------------
Confidence 00
Q ss_pred ceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-----CCeEEEEEcCCCceeeeecC-CCCCe----eEEE
Q 001311 785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----GGKISLFNMMTFKTMATFMP-PPPAA----TFLA 854 (1102)
Q Consensus 785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-----dg~I~iwd~~~~~~~~~~~~-~~~~i----~~l~ 854 (1102)
+...+..++|+|||+++++.. +..|++||+.+++....+.. +...+ ..++
T Consensus 253 --------------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 253 --------------------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp --------------------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred --------------------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence 233345566666666555443 24688999988887665543 23333 3789
Q ss_pred EecCCCcEEEE--EeCCC------cEEEEE-eecce--eeeeecccccccee-EEEecCCCEEEEEcCC---CcEEEEEc
Q 001311 855 FHPQDNNIIAI--GMDDS------SIQIYN-VRVDE--VKSKLKGHSKRITG-LAFSHALNVLVSSGAD---SQLCVWSS 919 (1102)
Q Consensus 855 ~sp~d~~~las--g~~dg------~v~vwd-~~~~~--~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~D---g~i~vwd~ 919 (1102)
|+| ||+.|+. +..++ .|++|| ..+++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++
T Consensus 313 ~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 999 7776664 45667 566677 34443 15555544444554 6999999999766554 78999998
Q ss_pred CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC--eEEEEEcCCceEee
Q 001311 920 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--QLAIFETTKLECVK 975 (1102)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~--~i~iwd~~~~~~~~ 975 (1102)
..........+ .........+..++|+|||++++.. ..+ ...+++..++..+.
T Consensus 392 ~~~~~~~~~~l---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 392 NTVGNFNRQCL---SCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp CSSTTCCCBCS---STTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred eCCCCCCccee---cccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 75322111111 1100011357899999999999884 222 33455655554433
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=3e-21 Score=215.82 Aligned_cols=299 Identities=10% Similarity=0.145 Sum_probs=200.8
Q ss_pred ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-ceEEeeeccccccCCCCccccc
Q 001311 704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS 782 (1102)
Q Consensus 704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 782 (1102)
.+++++.++.|++|++...........+ .+...+..++|+|+|+++++++.+ +.+.+|++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------ 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence 3445477899999999642111112221 255678889999999988888886 9999998741
Q ss_pred ccceeccCCCccccc-cccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEc---CCCceeeeecCCCCCeeEEEEe
Q 001311 783 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH 856 (1102)
Q Consensus 783 ~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~---~~~~~~~~~~~~~~~i~~l~~s 856 (1102)
.++.... ..+. ....+..++|+|+++++++++ ++.|.+||+ ...+....+..+ ..+.+++|+
T Consensus 70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence 1111110 0011 123688999999999887765 688999999 444455555543 458999999
Q ss_pred cCCCcEEEEEe-CCCcEEEEEeec-ceeee----eecc-ccccceeEEEecCCCEEEEE-cCCCcEEEEEcCC--Ccccc
Q 001311 857 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQK 926 (1102)
Q Consensus 857 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~--~~~~~ 926 (1102)
| ++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|+++ ..++.|.+|++.. ++...
T Consensus 138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 9 888777777 899999999987 65432 2222 33467889999999977554 5889999999954 33322
Q ss_pred eeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcC--C--ceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311 927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d~~i~iwd~~--~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
................+..++|+|+|++|++ . .++.|.+||+. + .+.+..+. .+. .+.+++|+|||++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence 2222222211111234568999999998886 4 67899999998 3 34444443 223 3899999999999888
Q ss_pred Ee-CCCeEEEEEc--CCceeE--EEeCCCcccCCCCCCCcccceEEEecCC
Q 001311 1001 CF-LDATVCVFSA--ANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus 1001 ~s-~Dg~I~vwd~--~~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
++ .|+.|.+|++ .++++. ..+. .+ ..|..++|.|+
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~------~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYA------VG-----QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEE------CS-----SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccccc------cC-----CCCeeEEEEcc
Confidence 87 6899999954 466543 3332 12 23557888774
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=3.6e-21 Score=238.24 Aligned_cols=336 Identities=8% Similarity=0.013 Sum_probs=214.9
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEccCCcee-eeEEEeeccc-----------------cCEEEEEEcCCCCeeEEE
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHV-----------------GGVNDIAFSHPNKQLCVI 471 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~-----------------~~V~~v~~s~d~~~~~l~ 471 (1102)
.+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. +++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~ 97 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVL 97 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEE
Confidence 35557888 77778888888 8 9999998763 32 22333 56999999999 53 344
Q ss_pred EecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-----CCCeeeecCCCCeeeE
Q 001311 472 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRVDYEAPGRWCTT 546 (1102)
Q Consensus 472 s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~v~~ 546 (1102)
+ .++.|++||+.+++.... ..+...+.+++| +++|++|+++ .|+.|++||+.+ ++...........+.
T Consensus 98 ~--~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~- 170 (706)
T 2z3z_A 98 F--TQGGLVGFDMLARKVTYL-FDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV- 170 (706)
T ss_dssp E--ETTEEEEEETTTTEEEEE-ECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE-
T ss_pred E--ECCEEEEEECCCCceEEc-cCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE-
Confidence 4 359999999998876544 446677877887 4667888885 679999999987 554433222222110
Q ss_pred EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCC
Q 001311 547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG---------------------------------DDFSIKFWDMDS 593 (1102)
Q Consensus 547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~ 593 (1102)
... ..+ ......+..+.|+|||++|++++ .+..|++||+.+
T Consensus 171 --~g~---~~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~ 244 (706)
T 2z3z_A 171 --YGQ---AVH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT 244 (706)
T ss_dssp --ESS---CCG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred --ccc---chh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence 000 000 00011234455555666666655 457899999998
Q ss_pred cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC-----cEEEEEccCCccceeecccccccccccCCCCCCCcccchh
Q 001311 594 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-----GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA 668 (1102)
Q Consensus 594 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1102)
++.........+...+.+++|+|||++|++++.++ .|++||+.++. ....+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~---------------------- 301 (706)
T 2z3z_A 245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLF---------------------- 301 (706)
T ss_dssp TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEE----------------------
T ss_pred CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEE----------------------
Confidence 87655443323334678999999999999887765 78888876551 111000
Q ss_pred hhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEc
Q 001311 669 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT 748 (1102)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 748 (1102)
T Consensus 302 -------------------------------------------------------------------------------- 301 (706)
T 2z3z_A 302 -------------------------------------------------------------------------------- 301 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec--CCCeEEEEe-
Q 001311 749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS- 825 (1102)
Q Consensus 749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~--d~~~las~s- 825 (1102)
..... .....+.+++|+| ||++++++.
T Consensus 302 -------~~~~~-------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 302 -------VETDK-------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp -------EEECS-------------------------------------------SCCCCCSCCEECTTCSSEEEEEECT
T ss_pred -------EccCC-------------------------------------------CeECccCCceeecCCCCEEEEEEcc
Confidence 00000 0011234567788 888777776
Q ss_pred CCeEEEEEcC-CCceeeeecCCCCCeeE-EEEecCCCcEEEEEe-CCC----cEEEEEeecceeeeeeccccccceeEEE
Q 001311 826 GGKISLFNMM-TFKTMATFMPPPPAATF-LAFHPQDNNIIAIGM-DDS----SIQIYNVRVDEVKSKLKGHSKRITGLAF 898 (1102)
Q Consensus 826 dg~I~iwd~~-~~~~~~~~~~~~~~i~~-l~~sp~d~~~lasg~-~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 898 (1102)
|+.++||.+. ++..+..+..+...+.. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|
T Consensus 332 ~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~ 408 (706)
T 2z3z_A 332 DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQL 408 (706)
T ss_dssp TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEE
T ss_pred CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEE
Confidence 7777888775 56667777777777876 79999 777665544 444 56666766655 34444 6677999999
Q ss_pred ecCCCEEEEEcCC----CcEEEEEcCCCc
Q 001311 899 SHALNVLVSSGAD----SQLCVWSSDGWE 923 (1102)
Q Consensus 899 s~d~~~l~s~s~D----g~i~vwd~~~~~ 923 (1102)
+|||++|+..+.+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999998876443 459999998865
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.5e-20 Score=206.10 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=173.5
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC-CC
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 430 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 430 (1102)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457788888899999999999999999988663 23345556 9999999998777666 89
Q ss_pred eEEEEEccCCce-eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-C--cEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311 431 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 506 (1102)
Q Consensus 431 ~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~ 506 (1102)
.|.+||..+++. .. .+..+..+..+++|+||++ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 3555666666699999999 56655544 3 8999999999998888754 446788875
Q ss_pred ecCCcc-EEEEEeCCCe-EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CC
Q 001311 507 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD 583 (1102)
Q Consensus 507 ~~~~~~-~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 583 (1102)
++|+ ++++...++. |.+|+++..+...... . ..+ ........++|+|+++++++++ .+
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~-------~~~--~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------Q-------EFI--SGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------E-------EEE--CSSSSEEEEEECTTSSEEEEEETTT
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecC--------C-------ccc--cCCCCccceEECCCCCEEEEEeCCC
Confidence 5555 4455556688 9999998654332111 0 000 0112356677788887665554 68
Q ss_pred CeEEEEECCCcce---EEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311 584 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 638 (1102)
Q Consensus 584 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 638 (1102)
+.|++||+.+++. +..+... ..+..++|+|||++|+++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777644 2478899999999877665 4778999998876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.3e-20 Score=208.67 Aligned_cols=245 Identities=12% Similarity=0.155 Sum_probs=174.9
Q ss_pred CCCCeeEEEEecCCCeEEEEe-C-CeEEEEEcC--CCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEe
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 877 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-d-g~I~iwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~ 877 (1102)
+...+.+++|+|++++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788999999999988887 4 899999997 544 334455444 789999999 888776665 4889999999
Q ss_pred ---ecceeeeeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCC-Cccccee--eeecCCCCCCCCCCCcEEEEcc
Q 001311 878 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 878 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
.+.+.+..+..+. .+.+++|+||+++|++++ .++.|++||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 4555556665443 588999999999888777 899999999987 4432211 2222222 2567899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--ceE--eeeec--cCCC--CCCeeEEEEcCCCcEEEEE-eCCCeEEEEEcC--C--c
Q 001311 951 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYAC-FLDATVCVFSAA--N--L 1015 (1102)
Q Consensus 951 dg~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~l~~spd~~~l~s~-s~Dg~I~vwd~~--~--~ 1015 (1102)
+|+++++ + .++.|.+|++.. ++. ..... ..++ ...+..++|+|||++|+++ ..|+.|++||+. + .
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998876 4 678999999953 432 22221 1111 3467789999999988754 478999999998 3 3
Q ss_pred eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001311 1016 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1016 ~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
+.+..+. .+ . .+..++|+| |+++|++++ .|+.|.+|++....
T Consensus 268 ~~~~~~~------~~--~---~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 268 SKEGFQP------TE--T---QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEEEE------CS--S---SCCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEeeeec------CC--C---ccceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence 4444443 11 1 133799999 578777777 68999999776443
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=3.6e-20 Score=205.94 Aligned_cols=285 Identities=13% Similarity=0.067 Sum_probs=196.8
Q ss_pred EEEccCCce-EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEE
Q 001311 745 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 823 (1102)
Q Consensus 745 ~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las 823 (1102)
..|.+++.. +++...++.|.+||.. +++...... . +...+ .++|+||++++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence 345555555 5566678999998863 333222111 1 34445 9999999997776
Q ss_pred Ee--CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeeeeccccccceeEE
Q 001311 824 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 897 (1102)
Q Consensus 824 ~s--dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~ 897 (1102)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+. ...+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceE
Confidence 65 68999999999887 777776666665599999 898888655553 89999999998888776543 468999
Q ss_pred EecCCCEEEE-EcCCCc-EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceE
Q 001311 898 FSHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC 973 (1102)
Q Consensus 898 ~s~d~~~l~s-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~ 973 (1102)
|+|||++|++ ...++. |.+|++................ ......++|+|||++++++ .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999985554 456688 9999998643221110111111 1246899999999977664 578999999999887
Q ss_pred ---eeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCcee--EEEeCCCcccCCCCCCCccc-ceEEEecCC
Q 001311 974 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVH-PLVIAAHPQ 1046 (1102)
Q Consensus 974 ---~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~-~~~v~f~p~ 1046 (1102)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+......... . .. .-.++|+|
T Consensus 211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~sp- 282 (331)
T 3u4y_A 211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR---P-LFGANQMALNK- 282 (331)
T ss_dssp CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG---G-GTTCCCEEECT-
T ss_pred cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC---C-cccccceEECC-
Confidence 666642 46778999999999876665 578899999999987 4333311001111 0 11 12589999
Q ss_pred CCCEEE-EEecCCcEEEEeccCCC
Q 001311 1047 EPNEFA-LGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1047 d~~~l~-s~~~Dg~v~vW~~~~~~ 1069 (1102)
|+++|+ ++..++.|.+||+.+..
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 567665 55556799999998766
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.8e-20 Score=206.23 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=142.2
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEE
Q 001311 826 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 905 (1102)
Q Consensus 826 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l 905 (1102)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+||++.|
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence 58899999999888777764 45688899999 88888777 68999999999988877765431 1234789999877
Q ss_pred EEEcCCC------------------------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311 906 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 961 (1102)
Q Consensus 906 ~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~ 961 (1102)
+..+.++ .|.+||+.+++.. ...... +. ..+..++|+|||++++++ ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~~ 260 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-YN 260 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-ES
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-CC
Confidence 6554332 3689999987653 111111 11 246789999999999988 79
Q ss_pred eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 962 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus 261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 999999999998877653 3468899999999999999999999999999999998887
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=9.4e-20 Score=204.63 Aligned_cols=273 Identities=11% Similarity=0.102 Sum_probs=205.6
Q ss_pred ccceEEEEEccCCceEEEeec-------CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311 739 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 811 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 811 (1102)
...+..++|+|+|+++++++. ++.|.+||. .+++...... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~----------------------~~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP----------------------VTLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT----------------------TTCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC----------------------CCCeEEEEEe----cCCCcce
Confidence 456789999999998887774 457777765 3333222111 2234678
Q ss_pred EEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCC---------eeEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001311 812 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 878 (1102)
Q Consensus 812 l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~ 878 (1102)
+++++++++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999766665 689999999999988887655432 78899999 777776665 47899999999
Q ss_pred cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
+++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++..... .. +.......+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence 99988888766667899999999999999999999999999987653322 11 111111356789999999988774
Q ss_pred --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311 959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus 959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
.++.|.+||..+++.+..+... ....++|+|||+++++++ .++.|.+||..+++.+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence 4589999999999988877642 236799999999766555 68999999999999988776 11
Q ss_pred ccceEEEecCCCCCEEEEEecCC
Q 001311 1036 VHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1036 v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 1244899999 577666665553
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.2e-19 Score=203.79 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=183.6
Q ss_pred ccCCCCeeEEEEecCCCeEEEEEec------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 416 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llasg~~------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 416 (1102)
......+..++|+|+|++++++... ++.|.+||..+++.+.... ....+.+++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence 3455678999999999986555533 6799999999998776411 1234778999
Q ss_pred ccCCCeEEEE-ECCCeEEEEEccCCceeeeEEEeecccc---------CEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 417 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 417 spdg~~las~-~~d~~v~vwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||+.+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence 9999966655 5579999999999886553 333322 27899999999953222224688999999999
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
++.+..+..+...+.+++| +++++++++++.++.|.+||..+.+....+..... + ....+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~ 234 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLAL--DSEGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFI 234 (353)
T ss_dssp TEEEEEECCCCTTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEE
T ss_pred CceEEEecCCCCccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccc
Confidence 9999988766666777777 45668899999999999999987665544332110 0 011344
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311 567 VVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 638 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 638 (1102)
.++++|+++++++++ .++.|.+||+.+++.+..+.... ...++|+|++++++++. .++.|.+||..++
T Consensus 235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 456666666666655 45999999999999888887532 25699999999777666 6899999998776
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.7e-20 Score=209.19 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=200.3
Q ss_pred ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC-CeeEEEEecCCCeEEEEe--CCe
Q 001311 752 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 828 (1102)
Q Consensus 752 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~las~s--dg~ 828 (1102)
.++++++.++.|.+||+. +++.......+ +.. .+..++|+||+++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE----------------------KMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETT----------------------TTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECC----------------------CCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 357888889999999863 22222211101 111 478899999998776554 689
Q ss_pred EEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCcEEEEEe------------CCCcEEEEEeecceeeeeeccccc
Q 001311 829 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 891 (1102)
Q Consensus 829 I~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~ 891 (1102)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998887765321 2578899999 888888886 579999999999888777764 45
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC--------
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET-------- 961 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~-------- 961 (1102)
.+.+++|+||+++|+++ ++.|.+||+.+++.... + ..+.. ...+.|+|||+++++. .++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~--~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--K--PIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--E--CSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--e--ecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 68899999999988888 68899999998764221 1 11110 1223789999877653 222
Q ss_pred ---------------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311 962 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus 962 ---------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
.|.+||+.+++.. .+....+...+.+++|+|||++|+++ ++.|++||+.+++.+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 277 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---- 277 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence 4789999998876 44434566788999999999999988 7999999999999887776
Q ss_pred cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCccccc
Q 001311 1027 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
.+. .+.+++|+| |+++|++++.|+.|.+||+.+++.....
T Consensus 278 ~~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 111 133899999 6788888899999999999998844333
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.6e-19 Score=202.21 Aligned_cols=246 Identities=11% Similarity=0.138 Sum_probs=168.7
Q ss_pred CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEee
Q 001311 805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 878 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~ 878 (1102)
+...+..++|+|||+++++.. ++.|++|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444433 3789999997665 3444455677899999999 888888877 78999999996
Q ss_pred c-c--eeeeeecc---------ccccceeEEEecCCCEEEEEcCCCcEEEEEcC-CCcccceeeeecCCCCCCCCCCCcE
Q 001311 879 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 945 (1102)
Q Consensus 879 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 945 (1102)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 22333321 12347889999999977777788999999998 443322221222222 24578
Q ss_pred EEEccCCcEEEEE--eCCeEEEEEcCC--ceEee--eeccCCC----CCCeeEEEEcCCCcEE-EEEeCCCeEEEEEcCC
Q 001311 946 VQFHQDQIHFLVV--HETQLAIFETTK--LECVK--QWVPRES----SAPITHATFSCDSQLV-YACFLDATVCVFSAAN 1014 (1102)
Q Consensus 946 ~~~spdg~~l~~~--~d~~i~iwd~~~--~~~~~--~~~~~~h----~~~v~~l~~spd~~~l-~s~s~Dg~I~vwd~~~ 1014 (1102)
++|+|||++++++ .++.|.+|++.. ++... .+..... ...+..++|+|||++| ++...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 578999999874 54322 2221111 1458899999999987 4555689999999973
Q ss_pred -c--eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-CCcEEEEeccC
Q 001311 1015 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1067 (1102)
Q Consensus 1015 -~--~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-Dg~v~vW~~~~ 1067 (1102)
+ +.+..+.. .+ ..+..++|+| |+++|++++. ++.|.+|++..
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence 2 34443331 01 2244899999 6787777765 48999996543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.2e-19 Score=197.93 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=171.9
Q ss_pred CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCC-CceeeeecCCC-CCeeEEEEecCCCcEEEEEe--CCCcEEEEEee--
Q 001311 805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPP-PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR-- 878 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~-~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~-- 878 (1102)
|...+.+++|+||+++|++++++.|++||+.+ ++.......+. ..+.+++|+| ++++|++++ .++.+.||.+.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999999 87777666663 6789999999 899999998 44566666654
Q ss_pred cceeeeeeccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 879 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
+++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++..... ... ...+. ..+..++|+|+|++|++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence 443 44454443 488899999999887 7788999999986532111 111 11121 36789999999998887
Q ss_pred E--eCCeEEEEEcC-CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----------CeEEEEEcCCceeEEEeCC
Q 001311 958 V--HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus 958 ~--~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~ 1023 (1102)
+ .++.+++|++. .+.....+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 444444444 567789999999999999988876 569999999887643332
Q ss_pred CcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311 1024 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1024 ~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
.. +| ...+. .++|+| |++.|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 11244 689999 578887777664
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.7e-19 Score=195.05 Aligned_cols=243 Identities=14% Similarity=0.111 Sum_probs=171.9
Q ss_pred CccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCC-CCCeEE
Q 001311 336 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR 413 (1102)
Q Consensus 336 ~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 413 (1102)
......+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 3445566779999999999999997 66665 78999999998 76554 23344 478999
Q ss_pred EEEccCCCeEEEEE--CCCeEEEEEc--cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCe
Q 001311 414 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA 488 (1102)
Q Consensus 414 l~~spdg~~las~~--~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~ 488 (1102)
++|+|||++|++++ .++.+.||.+ .++.. . .+..+ ..+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 4455666655 44432 2 24333 35899999999995 34478889999999964 234
Q ss_pred eeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311 489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 566 (1102)
Q Consensus 489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~ 566 (1102)
....+..|...+.+++|+ +++.+|+.++ .++.+++|+++ .......+..+...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------------- 220 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW--------------------- 220 (297)
T ss_dssp CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE---------------------
T ss_pred cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC---------------------
Confidence 456677788889999885 5567666655 58999999987 3344444444333344
Q ss_pred EEEEcCCCCEEEEEeCC-----------CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311 567 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 628 (1102)
.+.|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 44555555677776654 579999999887644433222234688899999999998887653
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=3.2e-18 Score=196.16 Aligned_cols=315 Identities=14% Similarity=0.149 Sum_probs=199.9
Q ss_pred ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311 739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818 (1102)
Q Consensus 739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~ 818 (1102)
...+..+++++++..+++++.++ +++|+.......... ......+........ ..+...|.+++|+|++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP---GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT---TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc---ccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence 34678899999999999988887 888876332110000 000000000000000 1256789999999999
Q ss_pred CeEE----EEe-CCeEEEEEcCCC--------c---eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 819 SYVM----SAS-GGKISLFNMMTF--------K---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 819 ~~la----s~s-dg~I~iwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
++|+ +++ |+.|+|||+.++ + ....+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998764 1 14556779999999999995489999999999999999999877
Q ss_pred eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC-CCCCCCCCcEEEEccCCcEEEEE--e
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVV--H 959 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~--~ 959 (1102)
.....+|...|++++|+|+|++|++|+.||+|++||++ ++... .+..... .......+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77777899999999999999999999999999999998 33211 1111111 00111368999999999998773 4
Q ss_pred CC------eEEEEEcCCce-----Eeeeecc-----CCCCCCeeEEEEcCCCcEEEEEeC-CCeEEEEEcCCce--e-EE
Q 001311 960 ET------QLAIFETTKLE-----CVKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLK--L-RC 1019 (1102)
Q Consensus 960 d~------~i~iwd~~~~~-----~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vwd~~~~~--~-~~ 1019 (1102)
+| .+++|++.+.+ ....+.. .+...+-..+.+-+|.+++++++. .+.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 43 38999997642 1111110 011223333444478787766664 3446666543211 1 01
Q ss_pred EeC--CCcccCCCCCCCcccceEEEec--CCC------------CCEEEEEecCCcEEEEeccC
Q 001311 1020 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1020 ~~~--~~~~~~~gh~~~~v~~~~v~f~--p~d------------~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
.+. ....+|-.......+|+++++. ..+ --.|.+-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 110 0111222112233455555442 111 13577888999999999866
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=5.6e-19 Score=218.90 Aligned_cols=285 Identities=10% Similarity=0.045 Sum_probs=189.1
Q ss_pred eEEEEEccCCceEEEeec---------CceEEeeeccccccCCCCcccccccceeccCCCccccc-cccCCCCCCCCeeE
Q 001311 742 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC 811 (1102)
Q Consensus 742 i~~~~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~ 811 (1102)
+.+++|||||++|+.++. ++.|++||+. ++..+. .. ....+..
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~-----l~~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNE-----LPRPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSC-----CCSSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCcccccee-----cCccccc
Confidence 678999999999998876 5778877763 333310 00 1245788
Q ss_pred EEEecCCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCe-----------------eEEEEecCCCcEEEEEeCCC---
Q 001311 812 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS--- 870 (1102)
Q Consensus 812 l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~lasg~~dg--- 870 (1102)
++|||||+.||.+.++.|++|++.+++..+.. .++...| .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999887765433 2222222 5899999 999999987652
Q ss_pred -------------------------------cEEEEEeecceee--------eeeccccccceeEEEecCCCEEEEEcCC
Q 001311 871 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD 911 (1102)
Q Consensus 871 -------------------------------~v~vwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D 911 (1102)
.|++||+.+++.. ..+.+|...+.+++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999887653 2245688899999999998877774432
Q ss_pred ----CcEEEEE----cCCCcccceeeeecCCCCCCCCCCCc-----EEEEccCCcEEEE--E-eCC--eEEEEEcCCceE
Q 001311 912 ----SQLCVWS----SDGWEKQKNRFLQIPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 973 (1102)
Q Consensus 912 ----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~spdg~~l~~--~-~d~--~i~iwd~~~~~~ 973 (1102)
..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 2488899 77655322110 0001222 2344 7899999997665 3 333 688888877763
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCC--cee-EEEeCCCcccCCCCCCCcccceEEEecC
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1045 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f~p 1045 (1102)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.++. +.. ...+.. .+. +| ...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s~ 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFSD 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEECG
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEECC
Confidence 3333 345668888888 88887776665 8889998764 421 222220 011 11 11133 788999
Q ss_pred CCCCEEE-EEecC--CcEEEEeccCCC
Q 001311 1046 QEPNEFA-LGLSD--GGVHVFEPLESE 1069 (1102)
Q Consensus 1046 ~d~~~l~-s~~~D--g~v~vW~~~~~~ 1069 (1102)
+ +++++ +++.+ ..+.+||+.+++
T Consensus 420 d-g~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 Y-AKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp G-GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred C-CCEEEEEcCCCCCCeEEEEECCCCC
Confidence 5 55554 55544 468899987776
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.2e-18 Score=194.98 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=183.1
Q ss_pred CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec---CceEEeeeccccccCCCCcccccccce
Q 001311 710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 786 (1102)
Q Consensus 710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 786 (1102)
.++.+.+|.+..... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++..+..
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 456788888764221 1111111 12445677899999999 666654 58999998732211
Q ss_pred eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcC-CCc--eeeeecC---------CCCCeeE
Q 001311 787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFK--TMATFMP---------PPPAATF 852 (1102)
Q Consensus 787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~-~~~--~~~~~~~---------~~~~i~~ 852 (1102)
..+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ++. .+..+.. +...+.+
T Consensus 76 -------~~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 76 -------HKLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp -------EEEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred -------EEeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 01110 00 1456688999999999888887 6899999996 222 2333321 1234889
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEee-cceeee--eeccc-cccceeEEEecCCCEEEE-EcCCCcEEEEEcCC--Cccc
Q 001311 853 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS--KLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 925 (1102)
Q Consensus 853 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~--~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~--~~~~ 925 (1102)
++|+| +++++++...++.|++|++. +++... .+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778999999998 454322 22222 235678999999996655 56788999999874 3322
Q ss_pred ceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcCC-c--eEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311 926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d~~i~iwd~~~-~--~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
.................+..++|+|||++|++ . .++.|.+|++.. + +.+..+. .+...+..++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 22222222221111134678999999998866 3 578999999973 2 4444443 44567899999999999988
Q ss_pred EeCC-CeEEEE--EcCCceeEE
Q 001311 1001 CFLD-ATVCVF--SAANLKLRC 1019 (1102)
Q Consensus 1001 ~s~D-g~I~vw--d~~~~~~~~ 1019 (1102)
++.+ +.|.+| |..+|++..
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEEE
T ss_pred EEcCCCcEEEEEEeCCCCeEEe
Confidence 8765 899999 556776653
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=4.1e-19 Score=220.08 Aligned_cols=335 Identities=11% Similarity=0.068 Sum_probs=219.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-CCCcCeEEEcCCCCEEEEEEC---------CCcEEEEEcc
Q 001311 567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATS 636 (1102)
Q Consensus 567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~ 636 (1102)
.+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 345666664 55556799999999999988777654321 013789999999999998876 6889999887
Q ss_pred CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311 637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 716 (1102)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 716 (1102)
++. .+...
T Consensus 99 ~g~-~~~~~----------------------------------------------------------------------- 106 (719)
T 1z68_A 99 NGE-FVRGN----------------------------------------------------------------------- 106 (719)
T ss_dssp TTE-ECCSS-----------------------------------------------------------------------
T ss_pred CCc-cccce-----------------------------------------------------------------------
Confidence 762 11000
Q ss_pred EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311 717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 796 (1102)
Q Consensus 717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 796 (1102)
. -...+..++|||||+.|+.+. ++.|++|++..+.... +- ..+...
T Consensus 107 -------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~--~~~~~~ 152 (719)
T 1z68_A 107 -------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------IT--FNGREN 152 (719)
T ss_dssp -------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CC--CCCBTT
T ss_pred -------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Ee--cCCCcC
Confidence 0 012356789999999888875 7789999874322100 00 000000
Q ss_pred ccccCCCCCC---------CCeeEEEEecCCCeEEEEe-CC----------------------------------eEEEE
Q 001311 797 TNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLF 832 (1102)
Q Consensus 797 ~~~~~~~~~~---------~~i~~l~~s~d~~~las~s-dg----------------------------------~I~iw 832 (1102)
.... ++. ....+++|||||++|++++ |. .|++|
T Consensus 153 -~v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 153 -KIFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp -TEEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred -CeEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 0000 011 1235899999999999987 42 78899
Q ss_pred EcCCCcee--------eeecCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEE----eecceeeeee----cccccc
Q 001311 833 NMMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKR 892 (1102)
Q Consensus 833 d~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd----~~~~~~~~~l----~~h~~~ 892 (1102)
|+.+++.. ..+.+|...+..++|+| |++++++....+ .|++|| +.++++...+ .+|...
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 99987653 22346778899999999 788877754332 488999 7788776666 467777
Q ss_pred ce-----eEEEecCCCEEEE--EcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeC--
Q 001311 893 IT-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE-- 960 (1102)
Q Consensus 893 V~-----~l~~s~d~~~l~s--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d-- 960 (1102)
+. .++|+|||+.|+. ...++ .|.+||+.+++. .....+ . ..+..+.++ +++.++. +.+
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-~---~~v~~~~~~-d~~~i~~~~~~~~ 378 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQITSG-K---WEAINIFRV-TQDSLFYSSNEFE 378 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EECSCS-S---SCEEEEEEE-CSSEEEEEESCGG
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----EecccC-c---eEEEEEEEE-eCCEEEEEEecCC
Confidence 77 8999999996554 54555 466677766542 111111 1 245677777 8887777 443
Q ss_pred ---CeEEEEEcCC--ceE-eeeec--cCCCCCCeeEEEEcCCCcEEEEE-eCC--CeEEEEEcCCceeEEEeC
Q 001311 961 ---TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ---~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~l~~spd~~~l~s~-s~D--g~I~vwd~~~~~~~~~~~ 1022 (1102)
+..++|.+.. +.. ...+. ..+|...+..+.|+||+++++.. +.+ ..+++||+.+++.+..+.
T Consensus 379 ~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 379 EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887754 421 12222 12356778899999999987743 333 478999999988765554
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.5e-18 Score=197.06 Aligned_cols=266 Identities=13% Similarity=0.072 Sum_probs=170.3
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE-
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 424 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 424 (1102)
...++.+++++++.+ +++|+.|+ |+||+......... ...+. .............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 456899999999995 77888877 89988642110000 00000 0000000111234677899999999999999
Q ss_pred ---EEECCCeEEEEEccCC--------ceeeeEEEeeccccCEEEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 425 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 425 ---s~~~d~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999875 223334567789999999999998 55 799999999999999999988877
Q ss_pred eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572 (1102)
Q Consensus 493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~ 572 (1102)
..+|...|.+++|+ ++|.+|++|+.||.|++||.+ +.....+..+.. +...+...+.++.|++
T Consensus 188 ~~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~--------------~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 188 TLPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF--------------YESDHPVRVLDVLWIG 250 (434)
T ss_dssp EECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT--------------CCTTSCEEEEEEEEEE
T ss_pred ccCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC-CcccccccCCcc--------------cCCCCceeEEEEEEec
Confidence 78899999999995 456899999999999999988 333333332211 0000011334444444
Q ss_pred CCCEEEE-EeCCC------eEEEEECCCcc-----eEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEE
Q 001311 573 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA 634 (1102)
Q Consensus 573 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd 634 (1102)
++.++++ ...+| .+++|++...+ ....+... ........+.+-++.+++++++. .+.|.++.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 4444544 33343 38999997652 11222111 11111112333366676666654 45577776
Q ss_pred cc
Q 001311 635 TS 636 (1102)
Q Consensus 635 ~~ 636 (1102)
..
T Consensus 331 ~~ 332 (434)
T 2oit_A 331 RQ 332 (434)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4.8e-18 Score=210.25 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=159.1
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC-----CeEEEEEccCCC
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 421 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 421 (1102)
....+++|+|||++ ++++ |++|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 44668999999985 7776 8999999999998654 2344432 334589999999
Q ss_pred eEEEEECC---------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311 422 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 422 ~las~~~d---------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~ 492 (1102)
+|+.++.+ +.+.+||+.+++... +..|.+.+...+|||||+. |+.+ .|+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 566799999987543 6678889999999999994 6655 468999999998876542
Q ss_pred -eecCCCCe-----------------EEEeeeecCCccEEEEEeCCCe-EEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311 493 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553 (1102)
Q Consensus 493 -~~~h~~~v-----------------~~v~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1102)
..++...+ .++.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+...|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 23333333 23556 677788888876554 8888764322110 122334445554444
Q ss_pred ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC---cc--eEEEEcCC----CCCCCcCeEEEcCCCCEEEEE
Q 001311 554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 0 1123689999998 73 23333321 123357889999999977765
Q ss_pred ECC----CcEEEEEccCC
Q 001311 625 TND----NGIKILATSDG 638 (1102)
Q Consensus 625 ~~d----g~i~iwd~~~~ 638 (1102)
... ..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 432 36899998877
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=1.8e-18 Score=193.79 Aligned_cols=241 Identities=13% Similarity=0.080 Sum_probs=181.4
Q ss_pred EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeeeec
Q 001311 811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~ 887 (1102)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 345678888888887 8999999999998888876543 2588999999 77755 555678999999999988877665
Q ss_pred cc------cccceeEEEecCCCEEEEEcCC------------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311 888 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949 (1102)
Q Consensus 888 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 949 (1102)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++..... ...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--eeccCC----CcccceeEC
Confidence 32 2348899999999999998865 89999999885532211 111111 257889999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCceEeeeeccCC------------------------------------------------
Q 001311 950 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 981 (1102)
Q Consensus 950 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 981 (1102)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5554 4459999999988776654321
Q ss_pred ------------------CCCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEE
Q 001311 982 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus 982 ------------------h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 1042 (1102)
+...+..++|+| |+++|+++ ++.|++||+.+++.+..+. .... +. .++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence 011456778889 99999888 8999999999999887775 1111 33 799
Q ss_pred ecCCCCCEEEEEecCCcEEEEeccCCCccccc
Q 001311 1043 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
|+| |+++|++++.++.|.+||+.+++..-..
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 5777888888999999999988743333
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=6.5e-18 Score=189.18 Aligned_cols=288 Identities=11% Similarity=0.040 Sum_probs=190.9
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCCccceeeccc
Q 001311 569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 647 (1102)
++++++.++++++.++.|++||+.+++.+..+.... ...+..++|+|++++++++ ..++.|.+||+.++ +....+..
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~ 83 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL 83 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEc
Confidence 455666788999999999999999999888887543 1136789999999876554 46889999998776 22222110
Q ss_pred ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 727 (1102)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 727 (1102)
....
T Consensus 84 ~~~~---------------------------------------------------------------------------- 87 (349)
T 1jmx_B 84 SSVP---------------------------------------------------------------------------- 87 (349)
T ss_dssp CCST----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311 728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 807 (1102)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 807 (1102)
......+..++|+|+|+++++++.+....
T Consensus 88 --------~~~~~~~~~~~~spdg~~l~~~~~~~~~~------------------------------------------- 116 (349)
T 1jmx_B 88 --------GEVGRSMYSFAISPDGKEVYATVNPTQRL------------------------------------------- 116 (349)
T ss_dssp --------TEEEECSSCEEECTTSSEEEEEEEEEEEC-------------------------------------------
T ss_pred --------ccccccccceEECCCCCEEEEEccccccc-------------------------------------------
Confidence 00011234455666666555544331100
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
...+ ...++.|.+||+.+++. +..+. +...+.+++|+| +++ +++++ +.|++||+.+++.+.
T Consensus 117 ---------~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 117 ---------NDHY--VVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTV 180 (349)
T ss_dssp ---------SSCE--EECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEE
T ss_pred ---------cccc--ccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceec
Confidence 0000 00147899999988543 33344 334689999999 788 55554 449999999988777
Q ss_pred eeccccc------------------------cceeEEEecCCC-----------EEEEEcCCCcEEEEEcCCCcccceee
Q 001311 885 KLKGHSK------------------------RITGLAFSHALN-----------VLVSSGADSQLCVWSSDGWEKQKNRF 929 (1102)
Q Consensus 885 ~l~~h~~------------------------~V~~l~~s~d~~-----------~l~s~s~Dg~i~vwd~~~~~~~~~~~ 929 (1102)
.+..+.. ...++++++|+. ++.....++.+++|++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 252 (349)
T 1jmx_B 181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-------- 252 (349)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--------
T ss_pred cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--------
Confidence 6653320 234466665542 122333344555555422
Q ss_pred eecCCCCCCCCCCCcEEEEcc-CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311 930 LQIPTGRTPTAQSDTRVQFHQ-DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus 930 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
. ...+..++|+| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|+
T Consensus 253 ----~-----~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~v~ 319 (349)
T 1jmx_B 253 ----L-----TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLA 319 (349)
T ss_dssp ----C-----SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred ----C-----CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---CCCccceEECCCCCEEEEecCCCeEE
Confidence 0 12568899999 99999988 89999999999998877753 34578999999999998888899999
Q ss_pred EEEcCCceeEEEeC
Q 001311 1009 VFSAANLKLRCRIN 1022 (1102)
Q Consensus 1009 vwd~~~~~~~~~~~ 1022 (1102)
+||+.+++.+..+.
T Consensus 320 v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 320 VFNPDTLEKVKNIK 333 (349)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEeccccceeeeee
Confidence 99999999998887
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=2.1e-18 Score=207.74 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=167.5
Q ss_pred CCCeeEEEEecCCCeEEEEEec-CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLF 423 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~-d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 423 (1102)
...|.+++|+|||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| +++
T Consensus 21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 567999999999997 555554 9999999997665543 34444 68999999999 788
Q ss_pred EEEEC---CCeEEEEEccC--CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311 424 GVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498 (1102)
Q Consensus 424 as~~~---d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~ 498 (1102)
++++. +....||.+.. ...... +..+ ..+...+|+||++.+++++++.++. .+||+.+++.......+.
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~- 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG- 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS-
T ss_pred EEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC-
Confidence 87775 45567766644 221221 2222 2345678999998756666666554 599999998766555443
Q ss_pred CeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 499 PVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
.+++|+ +||++|++++.| +.|++||+.+++.. .+..+...+..++|+|||
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG--------------------- 206 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM--------------------- 206 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS---------------------
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC---------------------
Confidence 566764 566899988877 78999998876543 445555555555555555
Q ss_pred CEEEEEeCCC--eEEEEECCCcceEEEEcCCCCCCCcCeEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001311 575 NRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 575 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
+.|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.+|.+++|++
T Consensus 207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 207 KVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5677777788 8999999998877 55433 23466677 9999999999999999999997
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.5e-18 Score=209.20 Aligned_cols=271 Identities=10% Similarity=0.050 Sum_probs=187.0
Q ss_pred cccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEeecCC-CCeEEEeeeecCCccEEEEEeC---CCeEEEE
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 526 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~---dg~i~~w 526 (1102)
+..+|.+++|+|||+ .|++++. |++++||++.+++.. .+..|. ..+..+.|+ ++ +++++++. +...++|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC--CC-eEEEEeccCCCCcceEEE
Confidence 356899999999999 6777766 999999998766654 444454 688888886 44 67777765 5556676
Q ss_pred EcCC--CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC
Q 001311 527 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 604 (1102)
Q Consensus 527 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 604 (1102)
.++. ......+.... .+...+|+++|+ ..+++.+.++.+.+||+.+++.........
T Consensus 94 ~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAVK-PMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTSC-SBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCCC-CceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 6544 33322222211 222445555554 223444444555699999887665554321
Q ss_pred CCCCcCeEEEcCCCCEEEEEECC----CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311 605 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 680 (1102)
Q Consensus 605 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1102)
.+++|+|||++|++++.+ +.|++||+.++. .. .+.
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~---------------------------------- 191 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD---------------------------------- 191 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC----------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee----------------------------------
Confidence 789999999999988776 667777765551 10 000
Q ss_pred cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311 681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 760 (1102)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d 760 (1102)
T Consensus 192 -------------------------------------------------------------------------------- 191 (582)
T 3o4h_A 192 -------------------------------------------------------------------------------- 191 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CC--eEEEEEcCCC
Q 001311 761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 837 (1102)
Q Consensus 761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg--~I~iwd~~~~ 837 (1102)
.+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 192 -------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 192 -------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp -------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred -------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 0333456677777777777555 56 7888998888
Q ss_pred ceeeeecCCCCCeeEEE--------EecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc
Q 001311 838 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 909 (1102)
Q Consensus 838 ~~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 909 (1102)
+.. .+.+|...+..++ |+| ||.++++++.||.+++|++ ++... .+.+.|.+++|+ |++++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 777 7777777777777 999 7799999999999999999 66554 234678899999 999999888
Q ss_pred CCCc---EEEEEcCC
Q 001311 910 ADSQ---LCVWSSDG 921 (1102)
Q Consensus 910 ~Dg~---i~vwd~~~ 921 (1102)
.+.+ +.+||..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 7754 66666543
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=5.7e-17 Score=182.40 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=116.5
Q ss_pred CCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeeccee------e-------eeeccccccceeEEEecCCCEEEEEc-CC
Q 001311 847 PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV------K-------SKLKGHSKRITGLAFSHALNVLVSSG-AD 911 (1102)
Q Consensus 847 ~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~------~-------~~l~~h~~~V~~l~~s~d~~~l~s~s-~D 911 (1102)
...+.+++|+| ++++|++++ .++.|++|++..... + .....+...+.+++|+|||++|++++ .+
T Consensus 154 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 34468899999 888665554 588999999875431 1 11223345578899999999887766 68
Q ss_pred CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e--CCeEEEEEcC--Cce--EeeeeccCCCCC
Q 001311 912 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSA 984 (1102)
Q Consensus 912 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~--d~~i~iwd~~--~~~--~~~~~~~~~h~~ 984 (1102)
+.|.+|++.+++......+.....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ..
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~ 306 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GI 306 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SS
T ss_pred CeEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CC
Confidence 99999999876543322232222221 245799999999999774 3 4799999995 455 333333 2 45
Q ss_pred CeeEEEEcCCCcEEEEEe-CCCeEEEEEc--CCceeEE
Q 001311 985 PITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1019 (1102)
Q Consensus 985 ~v~~l~~spd~~~l~s~s-~Dg~I~vwd~--~~~~~~~ 1019 (1102)
.+.+++|+|||++|++++ .++.|.+|++ .++++..
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 788999999999998887 6789999654 5776654
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=5.5e-17 Score=200.77 Aligned_cols=342 Identities=10% Similarity=0.037 Sum_probs=213.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC-CCc--CeEEEcCCCCEEEEEECC---------CcEEE
Q 001311 565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKI 632 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~i 632 (1102)
...+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 3356677777677775 999999999999988777765421 112 347899999999998876 44567
Q ss_pred EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 712 (1102)
Q Consensus 633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 712 (1102)
||+.++. ... +
T Consensus 97 ~d~~~~~-~~~-l------------------------------------------------------------------- 107 (740)
T 4a5s_A 97 YDLNKRQ-LIT-E------------------------------------------------------------------- 107 (740)
T ss_dssp EETTTTE-ECC-S-------------------------------------------------------------------
T ss_pred EECCCCc-EEE-c-------------------------------------------------------------------
Confidence 7776651 110 1
Q ss_pred ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccC---CCCcccccccceecc
Q 001311 713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN---SSGKATASVAPQLWQ 789 (1102)
Q Consensus 713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~w~ 789 (1102)
..+...+...+|||||+.|+.+ .++.|++|++..+... .++... .+++
T Consensus 108 -----------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-----~~~~ 158 (740)
T 4a5s_A 108 -----------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED-----IIYN 158 (740)
T ss_dssp -----------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT-----TEEE
T ss_pred -----------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc-----ceec
Confidence 1134567899999999988877 5678999887432210 000000 0000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C-C-----------------------------------eEEEE
Q 001311 790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-G-----------------------------------KISLF 832 (1102)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d-g-----------------------------------~I~iw 832 (1102)
-....+...+ .-.....+.|||||++||.++ | + +|++|
T Consensus 159 g~~~~v~~ee-----~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 159 GITDWVYEEE-----VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp SBCCHHHHHH-----TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred Ccccccccch-----hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 0000000000 002234689999999999875 2 2 48889
Q ss_pred EcCC---Cc--eeeeec------CCCCCeeEEEEecCCCcEEEEEeC----CCcEEEEEeecce----eee--ee--ccc
Q 001311 833 NMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS--KL--KGH 889 (1102)
Q Consensus 833 d~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~~--~l--~~h 889 (1102)
|+.+ ++ ....+. +|...+..++|+| |+++++.... +..|++||+.+++ +.. .+ .+|
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 9988 73 223343 3777899999999 8887766543 3479999999987 332 22 456
Q ss_pred cccce-----eEEEecCCCEEE-EEcC-CC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-Ee
Q 001311 890 SKRIT-----GLAFSHALNVLV-SSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH 959 (1102)
Q Consensus 890 ~~~V~-----~l~~s~d~~~l~-s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~ 959 (1102)
...|. .++|+|||+.|+ ..+. +| .|.+||+.+++. .++..+. ..+..+. .+|++.|+. +.
T Consensus 313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEEEEES
T ss_pred CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEEEEEe
Confidence 65555 789999999887 6653 33 588888887543 2233332 1344433 355776666 43
Q ss_pred C-----C--eEEEEEcCCceEeeeecc--CCCCCCeeEEEEcCCCcEEEEEeCC---CeEEEEEcCCceeEEEeC
Q 001311 960 E-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 960 d-----~--~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~s~s~D---g~I~vwd~~~~~~~~~~~ 1022 (1102)
. + .|+..++.++.....+.. .+....+..+.||||+++++..... ..+.+++..+++.+..+.
T Consensus 383 ~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 383 EYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp CGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred cCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 2 2 455556655544323332 1234678899999999987755543 468899998887765544
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=5.6e-17 Score=182.47 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=165.7
Q ss_pred CCCCeeEEEEecCCCeEEEEe-C----CeEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEE
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQI 874 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-d----g~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~v 874 (1102)
+...+..++|+|||++|++++ + +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 345577899999999999888 4 6899998865 332 3334445556777777 455555554 6889999
Q ss_pred EEeecceeeeeec------c--------ccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcc------cce----ee
Q 001311 875 YNVRVDEVKSKLK------G--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF 929 (1102)
Q Consensus 875 wd~~~~~~~~~l~------~--------h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~------~~~----~~ 929 (1102)
|++.....+..+. + +...+.+++|+|||++|++++ .++.|.+|++..... ... ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9997543332221 1 122357799999999765554 588999999886432 111 11
Q ss_pred eecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEee--eec-cCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311 930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--QWV-PRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus 930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~--~~~-~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
.....+ ..+..++|+|||++++++ .++.|.+|++.+++... .+. ...+...+..++|+|||++|++++.+
T Consensus 205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 222222 246789999999988875 47899999998776522 222 12334567899999999998776654
Q ss_pred --CeEEEEEcC--Ccee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001311 1005 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1005 --g~I~vwd~~--~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
+.|.+|+++ +++. +..+. .+ ..+..++|+| |+++|++++ .++.|.+|++....
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTT
T ss_pred CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEECCC
Confidence 899999996 4553 33333 11 2344899999 678777776 67999997765433
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.5e-17 Score=187.15 Aligned_cols=251 Identities=10% Similarity=0.088 Sum_probs=170.7
Q ss_pred CCCeeEEEEecCCCeEEEEeCCeEEEEEcC-CCceeeeecC-CCCCeeEEEEecCCCcE--EEEEe-------------C
Q 001311 806 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNNI--IAIGM-------------D 868 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~ 868 (1102)
...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| ++++ ++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346789999999999998884499999997 7765443321 112366789999 8884 55553 6
Q ss_pred CCcEEEEEee-cceeeeeec----cccccceeEEEecCCCEEEEEc-CCCcEEEEEcC-CCcccceeeeecCCCCCCCCC
Q 001311 869 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ 941 (1102)
Q Consensus 869 dg~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~ 941 (1102)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++|+++ +++......+.... + ..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence 8999999997 466544443 2456789999999999888765 46789999998 65532211122111 0 12
Q ss_pred CCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceEee------eecc--CCCCC------CeeEEE-EcCCCcEEEEEe
Q 001311 942 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECVK------QWVP--RESSA------PITHAT-FSCDSQLVYACF 1002 (1102)
Q Consensus 942 ~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~~~------~~~~--~~h~~------~v~~l~-~spd~~~l~s~s 1002 (1102)
.+..++|+|||++++++ .++.|.+|+++ +++... .+.. .+|.. .+..++ |+|||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 57899999999999885 36799999765 565421 1211 12222 588999 999999988776
Q ss_pred CCC------eEEEEEcC-CceeEEEeCCCcccCCCCCCCcccceEEEecCC--CCCEEEEEecC-CcEEEEeccCC
Q 001311 1003 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1068 (1102)
Q Consensus 1003 ~Dg------~I~vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1068 (1102)
.+. +|.+|+++ ++++..... ..+ .+ . ..+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 432 89999996 676543211 000 00 1 11226889995 57888888765 89999999765
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.7e-16 Score=173.75 Aligned_cols=219 Identities=13% Similarity=0.078 Sum_probs=155.1
Q ss_pred CeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-cee
Q 001311 808 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV 882 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~ 882 (1102)
....++++|||++|+++. +++|.+||+.+++.+.+ +.. . ....+.+.|++...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 356688899999888875 46899999999888777 542 2 2233567784557888889999999999865 554
Q ss_pred ee------eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC------CCCCCCCCCcEEEEcc
Q 001311 883 KS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 883 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp 950 (1102)
.. .+..+..++ .+.+++++..++..+.++.|.++|+............... +.. +.....++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence 41 222223332 3455788888888888999999999765432111111110 000 01233589999
Q ss_pred CCcEEEEE-e-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc--e
Q 001311 951 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1016 (1102)
Q Consensus 951 dg~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~--~ 1016 (1102)
|++++.++ . .+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.|||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 99888874 3 24899999999999998874 23 999999999999998886 99999999999 9
Q ss_pred eEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311 1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
.+.++. ..| -.|..++++|+
T Consensus 339 ~~~~i~-----~~G-----~~P~~~~~~p~ 358 (361)
T 2oiz_A 339 LLRTIE-----GAA-----EASLQVQFHPV 358 (361)
T ss_dssp EEEEET-----TSC-----SSEEEEEECCC
T ss_pred eeEEec-----cCC-----CCcEEEEecCC
Confidence 988864 112 33557899984
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=2.2e-16 Score=179.66 Aligned_cols=250 Identities=13% Similarity=0.014 Sum_probs=160.9
Q ss_pred eeeccCCCCeeE-----EEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311 340 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 412 (1102)
Q Consensus 340 ~~~~~h~~~v~~-----v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 412 (1102)
.++..|...... .+|||||++|+.++..++ .|.+||+.+++... +..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence 333345555555 899999998555554467 48889999887665 3456666666
Q ss_pred EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEE--EcCCCCeeEEEE------------------
Q 001311 413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------ 472 (1102)
Q Consensus 413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------ 472 (1102)
.++|||||++|+.++.++.|++||+.+++.... +..+...+.... +++|++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceee---eechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 788999999999999999999999999875432 334555454444 489998 4442
Q ss_pred ----ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC-CccEEEEEeCC------CeEEEEEcCCCCCeeeecCCC
Q 001311 473 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG 541 (1102)
Q Consensus 473 ----~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~ 541 (1102)
.+.+..|.+||+.+++... +..+...+..+.|+ + +|..|+..+.+ ..|.++|....... .+..+.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~s--p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYR--PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEE--TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhccCCcceEEEEECCCCceEE-eecCCccccccEEC--CCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 2345789999999987544 44566778888875 5 56777776653 36777777654332 222222
Q ss_pred --CeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-C-C---CeEEEEECCCcceEEEEcCCC--CC-CCcCe
Q 001311 542 --RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPR 611 (1102)
Q Consensus 542 --~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~ 611 (1102)
..+....|+||| +.|+..+ . + ..|++||+.+++......... +. .....
T Consensus 236 ~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 236 EGESCTHEFWVPDG---------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp TTEEEEEEEECTTS---------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCcccccceECCCC---------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 134445555555 4454433 2 1 249999999887543322111 00 01233
Q ss_pred EEEcCCCCEEEEE---------ECCCcEEEEEccCC
Q 001311 612 IRFNKDGCLLAVS---------TNDNGIKILATSDG 638 (1102)
Q Consensus 612 ~~~s~~~~~l~~~---------~~dg~i~iwd~~~~ 638 (1102)
+.|+|||+.|+.. ..+..|++||+.++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 5899999988864 34568999998776
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2.4e-16 Score=177.33 Aligned_cols=250 Identities=11% Similarity=0.027 Sum_probs=168.8
Q ss_pred ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEEecCCC
Q 001311 741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
.+..++|+|+|++|++++.+ .+.+|++.. +|.+... .... + ..+.+++++|||+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg~ 95 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNTR 95 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCCE
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCCC
Confidence 56789999999988888877 899998731 1111100 0000 1 1245688999999
Q ss_pred e--EEEE--------------eCCeEEEEEcC-CCceeeeec----CCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEEe
Q 001311 820 Y--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNV 877 (1102)
Q Consensus 820 ~--las~--------------sdg~I~iwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~ 877 (1102)
+ ++++ .++.+.+|++. +++....+. .+...+.+++|+| ||++|++++. ++.|++||+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEE
Confidence 4 4444 47889999997 465544433 2456799999999 8888877664 679999999
Q ss_pred e-cceee--eeec--cccccceeEEEecCCCEEEEEcC-CCcEEEEEcC--CCcccc-eeeeecCCCCCCCCC-------
Q 001311 878 R-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGRTPTAQ------- 941 (1102)
Q Consensus 878 ~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~--~~~~~~-~~~~~~~~~~~~~~~------- 941 (1102)
. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|+++ +++... ...+...........
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67643 2333 24566899999999999887764 7899999876 343211 111222211110001
Q ss_pred CCcEEE-EccCCcEEEEE--eCC-----eEEEEEcC-CceEeeeec-cCCCCCCeeEEEEcC---CCcEEEEEeCC-CeE
Q 001311 942 SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-ATV 1007 (1102)
Q Consensus 942 ~v~~~~-~spdg~~l~~~--~d~-----~i~iwd~~-~~~~~~~~~-~~~h~~~v~~l~~sp---d~~~l~s~s~D-g~I 1007 (1102)
.+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...+..++|+| ||++|++++.+ +.|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v 334 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL 334 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence 367899 99999998874 333 89999996 666543211 112345677899999 89999999875 899
Q ss_pred EEEEcCCce
Q 001311 1008 CVFSAANLK 1016 (1102)
Q Consensus 1008 ~vwd~~~~~ 1016 (1102)
.||+++...
T Consensus 335 ~v~~~~~~~ 343 (365)
T 1jof_A 335 EIYRWKDEF 343 (365)
T ss_dssp EEEEEETTE
T ss_pred EEEEEchhh
Confidence 999998763
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=5.7e-16 Score=176.19 Aligned_cols=207 Identities=9% Similarity=0.019 Sum_probs=140.4
Q ss_pred cCCCCCCeEE-----EEEccCCCeEEEEEC-CC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311 404 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 404 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
+..|...+.. .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 899999999999987 66 48888998887543 2345655666788999999 6888888
Q ss_pred CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE----------------------eCCCeEEEEEcCCCCC
Q 001311 476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS 533 (1102)
Q Consensus 476 d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----------------------s~dg~i~~wd~~~~~~ 533 (1102)
++.|++||+.+++....+..+...+....|..++++.+++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 899999999999988777777766665666557777777643 2346788999887543
Q ss_pred eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeC------CCeEEEEECCCcceEEEEcCCCCC
Q 001311 534 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 606 (1102)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~ 606 (1102)
. .+..+...+..+ .|+| +++.|+.+.. ...|.++|...+.. ..+..+...
T Consensus 181 ~-~l~~~~~~~~~~---------------------~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (388)
T 3pe7_A 181 T-VILQENQWLGHP---------------------IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG 237 (388)
T ss_dssp E-EEEEESSCEEEE---------------------EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred E-EeecCCcccccc---------------------EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence 2 222222334444 4555 4555666554 34788888866554 333322211
Q ss_pred CCcCeEEEcCCCCEEEEEEC-CC----cEEEEEccCC
Q 001311 607 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG 638 (1102)
Q Consensus 607 ~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~ 638 (1102)
..+..++|+|||+.|+..+. ++ .|++||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 24667899999997765443 22 3888887766
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=2.5e-15 Score=167.90 Aligned_cols=229 Identities=9% Similarity=0.018 Sum_probs=140.0
Q ss_pred CCCeEEEEE-----ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---
Q 001311 357 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--- 428 (1102)
Q Consensus 357 dg~~llasg-----~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--- 428 (1102)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 555545443 2478999999999987653 2333344 8999999999999863
Q ss_pred -------CCeEEEEEccCCceeeeEEEeec---cccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEE-eec
Q 001311 429 -------RHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG 495 (1102)
Q Consensus 429 -------d~~v~vwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~-~~~ 495 (1102)
++.|.+||..+++.+..+..... +......++|+|||+. |+++. .+++|.+||+.+++.+.. +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 67899999998877654432211 2345678999999994 55443 368999999999998888 653
Q ss_pred CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
.+ ...+.+.+.. ...+++.+.||.+.+|++.......... +.. ..|.+... . ..+.+.+++.
T Consensus 151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~~----~~~~~~~~---------~-~~~~~~~~g~ 212 (361)
T 2oiz_A 151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQS-RSK----QMFSVKDD---------P-IFIAPALDKD 212 (361)
T ss_dssp -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEE-ECC----CCSCTTTS---------C-BCSCCEECSS
T ss_pred -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeec-ccc----ceEcCCCC---------c-eEEEecccCC
Confidence 22 2223333332 2578888999999999986533322100 000 00111110 0 0111234455
Q ss_pred EEEEEeCCCeEEEEECCCcce--EEEEcCCC--------CCCCcCeEEEcCCCCEEEEEEC
Q 001311 576 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
.++..+.++.|.++|+..+.. +..+.... .......++|+|+++.++++..
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 667777889999999875542 22221110 0011223788888877776543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=5.2e-15 Score=163.46 Aligned_cols=251 Identities=14% Similarity=0.067 Sum_probs=185.0
Q ss_pred CCCeeEEEEecCCCeEEEEe-C------------------------CeEEEEEcCCCceeeeec-CCCCCeeEEEEecCC
Q 001311 806 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 859 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-d------------------------g~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 859 (1102)
-..+.+++++++|+++++.. + +.|.+||..+++.+..+. ++......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999888876664 4456789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEeecce-eeeee---------ccccccceeEEEec-CCCEEEEEc-CCCcEEEEEcCCCcccce
Q 001311 860 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 927 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~vwd~~~~~~~~~ 927 (1102)
++++++...++.|++||..... .+..+ .++.....+|+|+| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999975432 44444 34455688999999 788888886 689999999543 32111
Q ss_pred eeeecCCCC---CCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE--
Q 001311 928 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1000 (1102)
Q Consensus 928 ~~~~~~~~~---~~~~~~v~~~~~spd-g~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-- 1000 (1102)
. ...-.+. .........++++|+ |.++++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++
T Consensus 181 ~-~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 W-GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp E-CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred e-ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 1 0000000 000123689999999 6665554 77899999999999998887666778899999999 433333
Q ss_pred -----EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1001 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1001 -----~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
...+..|++||..+++.+..+... .+ ..-.|..++++| |+.++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 334558999999999999887511 11 113356899999 5789999999999999998654
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.3e-14 Score=160.14 Aligned_cols=250 Identities=12% Similarity=0.123 Sum_probs=182.8
Q ss_pred CCCeeEEEEecCCCeEEEEEecC------------------------CeEEEEeCCCCeeEEeeeeeeeccCCCCccccc
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 401 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d------------------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1102)
-+.|.+|+++|+|+ ++++...+ ++|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36799999999998 47777766 4799999988877642
Q ss_pred cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc-eeeeEEEe---------eccccCEEEEEEcC-CCCeeEE
Q 001311 402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV 470 (1102)
Q Consensus 402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l 470 (1102)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......|+|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 123455688999999999999888889999999987642 222 23 24455789999999 676 67
Q ss_pred EEec-CCCcEEEEeCCCCeeeEEeecC----------CCCeEEEeeeecCC-ccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311 471 ITCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDYE 538 (1102)
Q Consensus 471 ~s~~-~d~~i~vWd~~~~~~~~~~~~h----------~~~v~~v~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1102)
++.+ .++.|++|| .+|+.+..+... ......+++. ++ +.++++...++.|++||..+++....+.
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 7775 689999999 778888777432 2347888875 44 5788888889999999998766665553
Q ss_pred --CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEc
Q 001311 539 --APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFN 615 (1102)
Q Consensus 539 --~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s 615 (1102)
.....+..++++| +. .+..+++.+++...+..|++||..+++.+..+.. ..+.....+++++
T Consensus 236 ~~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 236 HASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp CTTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred ccccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence 2344556666666 31 1111233344445567999999999999888742 2234457899999
Q ss_pred CCCCEEEEEECCCcEEEEEccC
Q 001311 616 KDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 616 ~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
|+|.++++...++.|++|++..
T Consensus 301 ~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 301 EDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCc
Confidence 9998888888899999999754
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.5e-13 Score=160.92 Aligned_cols=332 Identities=12% Similarity=0.104 Sum_probs=218.1
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--CCccceeecccccccc
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA 652 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~ 652 (1102)
..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. ++ +.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------ 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence 356667789999999999999998887433 35689999999999999999999999985 43 2222111
Q ss_pred cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311 653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 732 (1102)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 732 (1102)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccceEEEEEc----cCCceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC-C
Q 001311 733 LPENLRATKISRLIFT----NSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E 806 (1102)
Q Consensus 733 ~~~~~~~~~i~~~~~s----~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~ 806 (1102)
.......++|+ |||++++++... +.+.++|..+.+ .+....+.-..... ...| .
T Consensus 238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i~~~~~~~~~---------~~~~p~ 297 (567)
T 1qks_A 238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQSTRGMTYDE---------QEYHPE 297 (567)
T ss_dssp -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEEECCEECTTT---------CCEESC
T ss_pred -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEEecccccccc---------ccccCC
Confidence 01234678999 699988887764 899998853211 11100000000000 0001 2
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 881 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~ 881 (1102)
..+..+..++++..++... .|.|.++|..+..... .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence 2577888999877666554 6999999987654322 222 234566889999 888776655 57899999999998
Q ss_pred eeeeecc-----ccccceeEEEecCCC-EEEEEc-CCCcEEEEEcCCCccc--ceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 882 VKSKLKG-----HSKRITGLAFSHALN-VLVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 882 ~~~~l~~-----h~~~V~~l~~s~d~~-~l~s~s-~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
++..+.. |.+.-.. -++|++. ..++.. .+++|.++|..+.+.. ....++...... ..-..+.++|++
T Consensus 376 l~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~ 451 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS 451 (567)
T ss_dssp EEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred EEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence 7766543 4322222 2578744 445543 5689999999873210 011222222111 123567899999
Q ss_pred cEEEEEe--------CCeEEEEEcCCc-----eEe-eeec------cCCCCCCeeEEEEcCCCcEEEEEe-----CCCeE
Q 001311 953 IHFLVVH--------ETQLAIFETTKL-----ECV-KQWV------PRESSAPITHATFSCDSQLVYACF-----LDATV 1007 (1102)
Q Consensus 953 ~~l~~~~--------d~~i~iwd~~~~-----~~~-~~~~------~~~h~~~v~~l~~spd~~~l~s~s-----~Dg~I 1007 (1102)
+++.+.. .+.|.++|+.+. ... ..+. .......+..+.|++||+++..+. .++.|
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 9999854 359999999877 211 1221 111246789999999999887663 37999
Q ss_pred EEEEcCCceeEEEeC
Q 001311 1008 CVFSAANLKLRCRIN 1022 (1102)
Q Consensus 1008 ~vwd~~~~~~~~~~~ 1022 (1102)
.|+|..+++++.++.
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999998887
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=2.2e-14 Score=155.18 Aligned_cols=243 Identities=11% Similarity=0.115 Sum_probs=177.4
Q ss_pred CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec------CCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001311 805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 876 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 876 (1102)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456689999999999888776 8999999987 55655553 234578999995327777776643 88999999
Q ss_pred eecceeeeeec-cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 877 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 877 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||...... ...... ++ ...+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~~-~~---~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGCS-KH---LEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEECT-TT---CSSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCCC-Cc---cCCcEEEEECCCCCEE
Confidence 5677666663 3445688999999999888888889999999754211 111111 11 1256899999999977
Q ss_pred EEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-eEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311 956 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus 956 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|++||. +++.+..+.. ..
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV---- 248 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence 775 68899999974 55566665444456899999999999888888786 9999995 5666666541 11
Q ss_pred CcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1034 ~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
....+.+++++| +++++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355899999 5777776 67999999998653
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=3e-15 Score=170.68 Aligned_cols=294 Identities=10% Similarity=0.054 Sum_probs=184.4
Q ss_pred CeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccC-EEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311 410 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
.+.+++|||||++|+.+..+ ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 47889999999999887653 478889998886433 3333333 33488999999 68788888899999999
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
+++.......+.. | .++|..|+..+.++...+|.. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 9887666654443 2 233456666665555555531 122444444
Q ss_pred eEEEEcCCCCEEEEE-----eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCC------cEEEE
Q 001311 566 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL 633 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw 633 (1102)
.++.. ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.++ .|.+|
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 33332 3567899999998876655532 23477899999 788777766432 35555
Q ss_pred EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311 634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 713 (1102)
Q Consensus 634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 713 (1102)
+...+ .. ..+
T Consensus 222 d~~~~-~~-~~l-------------------------------------------------------------------- 231 (396)
T 3c5m_A 222 NEDGS-NV-RKI-------------------------------------------------------------------- 231 (396)
T ss_dssp ETTSC-CC-EES--------------------------------------------------------------------
T ss_pred ECCCC-ce-eEe--------------------------------------------------------------------
Confidence 54332 10 000
Q ss_pred cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-----ceEEeeeccccccCCCCcccccccceec
Q 001311 714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW 788 (1102)
Q Consensus 714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~w 788 (1102)
. .......+..+.|+|+|+.|+..+.+ +.|.+||+
T Consensus 232 ------------------~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~-------------------- 271 (396)
T 3c5m_A 232 ------------------K--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP-------------------- 271 (396)
T ss_dssp ------------------S--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT--------------------
T ss_pred ------------------e--ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC--------------------
Confidence 0 00012356778999999988777654 34777765
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-----------------CCeEEEEEcCCCceeeeecCCCC--
Q 001311 789 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP-- 848 (1102)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-----------------dg~I~iwd~~~~~~~~~~~~~~~-- 848 (1102)
.++....... .. ... ++|+| ||++++++. +..|++||+.+++.. .+..+..
T Consensus 272 --~~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 272 --ETLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp --TTCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred --CCCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 3332211100 11 122 88999 999888753 367999999887653 3443443
Q ss_pred ---------CeeEEEEecCCCcEEEEEeC-CCcEEEEEee
Q 001311 849 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYNVR 878 (1102)
Q Consensus 849 ---------~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~ 878 (1102)
.+..++|+| |++.|+.++. ++...||.+.
T Consensus 343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 256789999 7887776654 5555555443
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=3.2e-13 Score=158.22 Aligned_cols=338 Identities=13% Similarity=0.085 Sum_probs=214.7
Q ss_pred cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC--CCCCeeeecC
Q 001311 462 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEA 539 (1102)
Q Consensus 462 s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~ 539 (1102)
..|...+++++...+++|.++|..+++.+.++... ..+..+.| +++|+++++++.|+.|.+||+. +.+....+..
T Consensus 162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 33433337888899999999999999999888743 34567776 5677899999999999999995 5444433332
Q ss_pred CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCC---------CCCc
Q 001311 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPAS 609 (1102)
Q Consensus 540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v 609 (1102)
+.....++|++-. .|+|+++++++ .++.|.++|..+.+.+..+...+. ...+
T Consensus 239 -G~~P~~ia~s~~~-----------------~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 239 -GSEARSIETSKME-----------------GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp -CSEEEEEEECCST-----------------TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred -CCCCceeEEcccc-----------------CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence 2223344444100 03555666655 579999999999998887763321 1134
Q ss_pred CeEEEcCCCCEEEE-EECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccc
Q 001311 610 PRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 688 (1102)
Q Consensus 610 ~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1102)
..+..++++..+++ ...+|.|.++|..+...
T Consensus 301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~------------------------------------------------ 332 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKETGKILLVDYTDLNN------------------------------------------------ 332 (567)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEecCCCeEEEEecCCCcc------------------------------------------------
Confidence 45555555443332 22335555555432200
Q ss_pred cCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeec
Q 001311 689 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 768 (1102)
Q Consensus 689 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~ 768 (1102)
+ .+..+
T Consensus 333 -----------------------------------------------------------------~---------~v~~i 338 (567)
T 1qks_A 333 -----------------------------------------------------------------L---------KTTEI 338 (567)
T ss_dssp -----------------------------------------------------------------E---------EEEEE
T ss_pred -----------------------------------------------------------------c---------eeeee
Confidence 0 00000
Q ss_pred cccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecC-
Q 001311 769 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP- 845 (1102)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~- 845 (1102)
........+.|+||+++++++. +++|.++|+.+++.+..+..
T Consensus 339 -----------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg 383 (567)
T 1qks_A 339 -----------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG 383 (567)
T ss_dssp -----------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred -----------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence 0122345678889999887776 68899999999887766543
Q ss_pred ----CCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeeeeccccccceeEEEecCCCEEEEEcC---
Q 001311 846 ----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--- 910 (1102)
Q Consensus 846 ----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--- 910 (1102)
|.+.-.. -++|+++.+++++. .++.|.++|..+ .+.++++......-..|.++||+++|.+...
T Consensus 384 g~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 384 GQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp SSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred CcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 3322212 25783355555553 468999999987 6677777655433345789999999988663
Q ss_pred ----CCcEEEEEcCCCcc----cceeeeecC--CCCCCCCCCCcEEEEccCCcEEEEE-e-----CCeEEEEEcCCceEe
Q 001311 911 ----DSQLCVWSSDGWEK----QKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQLAIFETTKLECV 974 (1102)
Q Consensus 911 ----Dg~i~vwd~~~~~~----~~~~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~-~-----d~~i~iwd~~~~~~~ 974 (1102)
..+|.|+|+.+.+. .....+.+. .+-......+..+.|+++|+++.++ . ++.|.|+|.++++.+
T Consensus 463 ~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 463 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 35899999987611 111222210 0000111367899999999998875 2 689999999999988
Q ss_pred eeec
Q 001311 975 KQWV 978 (1102)
Q Consensus 975 ~~~~ 978 (1102)
..+.
T Consensus 543 ~~i~ 546 (567)
T 1qks_A 543 HVIK 546 (567)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8765
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.3e-14 Score=177.65 Aligned_cols=245 Identities=9% Similarity=-0.033 Sum_probs=161.9
Q ss_pred eeccCCCCeeEEEEecCCCeEEEEE--ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE------
Q 001311 341 RTLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------ 412 (1102)
Q Consensus 341 ~~~~h~~~v~~v~~spdg~~llasg--~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------ 412 (1102)
.+.+|...+..++|++++-+ ++++ +.++...||....+.... .+..|...|.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~ 77 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEY 77 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGT
T ss_pred HHhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCcccccccccc
Confidence 35568999999999988654 5555 557899999964443333 2445555555
Q ss_pred ---EEEEc--cCCCe-EEEEEC-CCeEEEEEcc--C-CceeeeEEEeec-----cccCEEEEEEcCCCCeeEEEEecCC-
Q 001311 413 ---RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD- 476 (1102)
Q Consensus 413 ---~l~~s--pdg~~-las~~~-d~~v~vwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~~d- 476 (1102)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~ 151 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEF 151 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEE
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecc
Confidence 56665 99999 776654 4566666665 3 43 22 2444 677899999999999 57766665
Q ss_pred ---------CcEEEEeCCC------CeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCC--------CeEEEEEcC-CC
Q 001311 477 ---------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYD-NL 531 (1102)
Q Consensus 477 ---------~~i~vWd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~ 531 (1102)
..|++||+.+ ++. ..+. .+...+..++| ++||++|+.++.+ ..|++||+. ++
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g 228 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG 228 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence 5899999987 544 4555 55566666676 5777888887755 379999988 33
Q ss_pred C--CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEEcCCCCC-
Q 001311 532 G--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 606 (1102)
Q Consensus 532 ~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 606 (1102)
. ....+. ......+..+.|+|+|+++++++.++ .|++||+.+++.......+...
T Consensus 229 ~~~~~~~l~--------------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 229 RFADTRTLL--------------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp CEEEEEEEE--------------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred cccccEEeC--------------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 1 111111 11122445566666667677777777 6777777677654433322111
Q ss_pred -----CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 607 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 607 -----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
..+.+++|++++++++++.. +.++||.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 01467889999999998888 88888854
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=3.8e-15 Score=169.85 Aligned_cols=239 Identities=12% Similarity=-0.030 Sum_probs=153.5
Q ss_pred CeeEEEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
.+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence 3788999999998666655433 78889998887543 12223333344889999999999
Q ss_pred EECCCeEEEEEccCCceeeeEEEeeccccCEEE-------------------EEEcCCCCeeEEEEe-----cCCCcEEE
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV 481 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~v 481 (1102)
++.++.|++||+.+++... + ...+...... +.|+|+++. ++.. ..+..|++
T Consensus 98 ~~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred EEcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence 9999999999999887543 1 2223332222 356788873 3332 45678999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC------CeEEEEEcCCCCCeeeecCC-CCeeeEEEEccCCc
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT 554 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 554 (1102)
||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~------ 244 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF------ 244 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE------
T ss_pred EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE------
Confidence 999988866554 46677888888541 44656655543 35888887654322211111 11334444
Q ss_pred eeeeccccCceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEEC--
Q 001311 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN-- 626 (1102)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-- 626 (1102)
|+|++++|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 245 ---------------~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 245 ---------------WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp ---------------ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred ---------------ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 44555555555432 459999998887554433221 22 88999 9998887652
Q ss_pred --------------CCcEEEEEccCC
Q 001311 627 --------------DNGIKILATSDG 638 (1102)
Q Consensus 627 --------------dg~i~iwd~~~~ 638 (1102)
++.|++||+.++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 367888887665
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=2.8e-10 Score=141.87 Aligned_cols=554 Identities=9% Similarity=0.085 Sum_probs=315.1
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
...|.++...++|.. -.|+. +-+..||..+.+...-. .. .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~~-~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNFF-YE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEEC-CE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEecc-cc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 467999999999983 34454 44899998876543210 00 0000012889999988887665
Q ss_pred EECCCeEEEEEccCCceeeeEEEeecc-ccC-EEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEE
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 502 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~ 502 (1102)
. . +.|..||..+++... . ..++ ... |.++...+++. +..+..++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 3 458899987764321 1 0011 123 88898888886 344555556889998777654321 123456777
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+.. +.++. |..++.++-|..||..+.... .+..... . ........+.++..+++|. |..|+.
T Consensus 220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~---~~~l~~~~i~~i~~d~~g~-lWigt~ 281 (795)
T 4a2l_A 220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPS----------N---PKSISSNYIRSLAMDSQNR-LWIGTF 281 (795)
T ss_dssp EEE--EETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTT----------C---TTSCSCSBEEEEEECTTSC-EEEEES
T ss_pred EEE--cCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCC----------C---ccccCCCeEEEEEEcCCCC-EEEEeC
Confidence 765 34444 555555555888887653321 1111000 0 0000112455555555555 444555
Q ss_pred CCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 657 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 657 (1102)
+ -|.+||..+++........ -....|.++...++|.+.+ |+.++-|..|+..+. . +..+.....
T Consensus 282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~-~-~~~~~~~~~------- 350 (795)
T 4a2l_A 282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRN-R-FKNIRNIPY------- 350 (795)
T ss_dssp S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence 5 5899998777644332111 0124578888888887554 667778888876543 1 111100000
Q ss_pred CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311 658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737 (1102)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 737 (1102)
.. ..
T Consensus 351 ----------------------------------------------------------------------~~------~l 354 (795)
T 4a2l_A 351 ----------------------------------------------------------------------KN------SL 354 (795)
T ss_dssp ----------------------------------------------------------------------SS------SC
T ss_pred ----------------------------------------------------------------------CC------CC
Confidence 00 01
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
....|.++...++|. |..++.++-+..|+.....+ ..+....+. ....-....|.+++..++
T Consensus 355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-----~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-----SARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCSCSCEEEEEEETT
T ss_pred CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-----cccCCCCccEEEEEEcCC
Confidence 235688888888887 55566666677776532211 000000000 000002456899999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc----
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---- 888 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---- 888 (1102)
++.|-.|. ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-|.+||..+++.......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence 98444555 6889999988766433221 2345789999887 676555 444 4588899877654332211
Q ss_pred --ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001311 889 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 966 (1102)
Q Consensus 889 --h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iw 966 (1102)
+...|.++...++|++.+... +| |..||..+++. ...............|.++..+++|.+.+.... .|..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence 235789999998888777554 44 88899876542 111000001111246788888999987665544 78899
Q ss_pred EcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecC
Q 001311 967 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1045 (1102)
Q Consensus 967 d~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p 1045 (1102)
|..+++....-...+ ....|.++...++|.+.+++ ++-|..||..+++.. .+....-++. .....-++...+
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~ 640 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS 640 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence 988776544222112 24578999999999876655 455788998877654 3442222221 112212455555
Q ss_pred CCCCEEEEEecCCcEEEEeccCC
Q 001311 1046 QEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1046 ~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
+|. |..|+.+| +..++...-
T Consensus 641 -~G~-l~~g~~~G-l~~~~p~~~ 660 (795)
T 4a2l_A 641 -VGQ-MYFGGING-ITTFRPELL 660 (795)
T ss_dssp -TSC-EEEEETTE-EEEECGGGC
T ss_pred -CCe-EEEecCCc-eEEEcHHHc
Confidence 454 55556565 566676543
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1.3e-13 Score=149.13 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=174.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE-ccCCCe
Q 001311 344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSL 422 (1102)
Q Consensus 344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~ 422 (1102)
++-..+.+++++|+|+ ++++...++.|.+||.. ++.+..... .....+|...+.++++ .+++++
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeE
Confidence 3556799999999998 58888889999999987 544432100 0011245567899999 477777
Q ss_pred EEEEEC-CCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee--cCCC
Q 001311 423 FGVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEA 498 (1102)
Q Consensus 423 las~~~-d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~--~h~~ 498 (1102)
+++... ++.|.+|| .+++.+.. +. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++..
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~---~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRK---FGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLE 164 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEE---ECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCS
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEE---ecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccC
Confidence 777644 89999999 45554432 32 3446789999999998 7788788899999995 566666664 4556
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.+.++++ +++|.++++...++.|++||... .....+..... ......++++++++.++
T Consensus 165 ~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v 222 (286)
T 1q7f_A 165 FPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILI 222 (286)
T ss_dssp SEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEE
T ss_pred CcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEE
Confidence 6888887 45667788888899999999743 32222221110 12345566777777777
Q ss_pred EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
+...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+...
T Consensus 223 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 223 ADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 777775 9999996 5666777665443334668999999987766 6799999998754
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.6e-14 Score=177.01 Aligned_cols=334 Identities=9% Similarity=0.001 Sum_probs=199.0
Q ss_pred eeccccCEEEEEEcCCCCeeEEEEe--cCCCcEEEEeCCCCeeeEEeecCCCCeE---------EEeeeecCCccE-EEE
Q 001311 449 IDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IFS 516 (1102)
Q Consensus 449 l~~h~~~V~~v~~s~d~~~~~l~s~--~~d~~i~vWd~~~~~~~~~~~~h~~~v~---------~v~~~~~~~~~~-l~s 516 (1102)
+.+|...|..++|+++.- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 567889999999997644 67777 6688999999766666777877776665 555543477777 665
Q ss_pred EeC-CCeEEEEEcC--CCCCeeeecC-----CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC-----
Q 001311 517 TAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----- 583 (1102)
Q Consensus 517 ~s~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 583 (1102)
++. +..|.+|++. .......+.. +...+. .++|+|||+.|+.++.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~---------------------~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA---------------------DPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE---------------------EEEEETTTTEEEEEEEEECSSS
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc---------------------CcEECCCCCEEEEEEecccCCC
Confidence 543 5566666654 1033333332 222333 44555555677777665
Q ss_pred -----CeEEEEECCC------cceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCC--------cEEEEEcc-CCcc-c
Q 001311 584 -----FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR-L 641 (1102)
Q Consensus 584 -----g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~-~ 641 (1102)
..|++||+.+ ++.. .+. .+ ...+..++|+|||++|+.++.++ .|++||+. ++.. .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999988 5543 333 22 23577899999999999887553 68888876 3310 0
Q ss_pred eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311 642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 721 (1102)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 721 (1102)
...+.
T Consensus 233 ~~~l~--------------------------------------------------------------------------- 237 (662)
T 3azo_A 233 TRTLL--------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred cEEeC---------------------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311 722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801 (1102)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 801 (1102)
..+...+..+.|+|||+.++++..++...||.++ ..++........
T Consensus 238 --------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l~~~ 283 (662)
T 3azo_A 238 --------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQLCRR 283 (662)
T ss_dssp --------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEESSCC
T ss_pred --------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeecccc
Confidence 1134567889999999977777677744554332 112211110000
Q ss_pred C-----CCCCCCeeEEEEecCCCeEEEEeCCeEEEE--EcCCCceeeeecCCCCCeeEE-EEecCCCcEEEEEeCCC--c
Q 001311 802 D-----SNPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS--S 871 (1102)
Q Consensus 802 ~-----~~~~~~i~~l~~s~d~~~las~sdg~I~iw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg--~ 871 (1102)
. ..-.-.+..++|++++++++++..+.++|| |+.+++ +..+..|...+..+ +++. +..++++++.+. .
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYE 361 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCE
Confidence 0 000111467899999999888866777777 555554 67777777778777 5554 333444455554 4
Q ss_pred EEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 872 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 872 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
|++||+.+++.......|...+....+++.....+....+..|..|-+
T Consensus 362 i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 362 VVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 555566566654443445444444444443334444433445666644
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.64 E-value=1.9e-10 Score=143.26 Aligned_cols=545 Identities=10% Similarity=0.084 Sum_probs=316.9
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
...|+++.-.++|. |-.|+.+| +..+|-.+ .. .+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA---FT-----VYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC---EE-----EECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc---eE-----EEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 46899999999997 44566665 55666332 21 1111000 00 001235799999999987665
Q ss_pred EECCCeEEEEEccCCceeeeEEEeecccc----CEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC-CCC-
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVG----GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 499 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~----~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h-~~~- 499 (1102)
|+.+| +..||..+++... +..... .|.++...++|. +.+ ++. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8899988765322 221111 288999888887 444 333 45889998776543211111 112
Q ss_pred eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
|.++.. +.++ .|..++.++.|..|+..+........ .... .+.++...+++. +.
T Consensus 175 i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLY--RQGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW 229 (795)
T ss_dssp CEEEEE--EETT-EEEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred eEEEEE--CCCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence 777665 3344 45556665568888876543221100 0112 334444444444 55
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 653 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 653 (1102)
.++.++-|.+||..+++........ -....|.++...++|.+.+ |+.+ .|.+|+..++ .. ..+.....
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~-~~~~~~~~--- 302 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SF-ASYSSNPV--- 302 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EE-EEECCCTT---
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eE-EEEecCCC---
Confidence 5555555899998776544332211 0123578888888887665 4444 5888887654 21 11110000
Q ss_pred ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311 654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 733 (1102)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 733 (1102)
...
T Consensus 303 -------------------------------------------------------------------------~~~---- 305 (795)
T 4a2l_A 303 -------------------------------------------------------------------------ENG---- 305 (795)
T ss_dssp -------------------------------------------------------------------------STT----
T ss_pred -------------------------------------------------------------------------CCC----
Confidence 000
Q ss_pred CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311 734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 813 (1102)
Q Consensus 734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~ 813 (1102)
......|.++...++|. +..++.++-+..|+.....+ ..+..... ...-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~-------~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRNIPY-------KNSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECCCTT-------SSSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcCCCC-------CCCCCCCeeEEEE
Confidence 01335688999999998 55566666677776533211 00100000 0001345699999
Q ss_pred EecCCCeEEEEeCCeEEEEEcCCCceeeeecC--------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
.+++|.+.+...++.|..|+..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99998866655577899999887654332211 235689999988 777566688877899999887664332
Q ss_pred ec----cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC-CCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311 886 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE 960 (1102)
Q Consensus 886 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~d 960 (1102)
.. .+...|.++...++|.+.+... +| |.+||..+++.... .... ........|.++...++|...+...
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~- 516 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTI---EKEKDGTPVVSKQITTLFRDSHKRLWIGGE- 516 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEEC---CBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEc---cccccccccCCceEEEEEECCCCCEEEEeC-
Confidence 21 2345789999888888766554 44 89999877543211 1100 0011124678899999998777665
Q ss_pred CeEEEEEcCCceEeeeecc-----CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311 961 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
+.|..||..+++. . +.. ......|.++...++|.+.++. .. -|..||..+++.. .+....-++. ..
T Consensus 517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~ 587 (795)
T 4a2l_A 517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NV 587 (795)
T ss_dssp SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hh
Confidence 6799999887766 2 210 1124579999999999866644 34 5888998877654 3332222222 22
Q ss_pred ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+. ++...+ +|++.+++ ++.|..|+..++.
T Consensus 588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 44 666666 45555544 4667778876554
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=2.4e-13 Score=151.73 Aligned_cols=220 Identities=10% Similarity=0.107 Sum_probs=153.1
Q ss_pred CeeEEEEecCCCeEEEEe-C---Ce--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC------------
Q 001311 808 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------ 869 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-d---g~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------------ 869 (1102)
.+..++|+|||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999876 3 33 888898887765544433 3 99999999 88888877642
Q ss_pred ---------------CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC-------cEEEEEcCCCcccce
Q 001311 870 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 927 (1102)
Q Consensus 870 ---------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~ 927 (1102)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999988876455554 4 78999999999 877776542 4455555443321
Q ss_pred eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC--------CeEEEEEcCCceEeeeeccCCCCCCeeE-EEEcCCCcE
Q 001311 928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 997 (1102)
Q Consensus 928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~spd~~~ 997 (1102)
.... + ..+.. ++|||++|+.. .+ ..|.+|| +++...... +|...+.. +.|+ |+ +
T Consensus 212 ~l~~---~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 KMFE---K-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEEE---E-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred Eecc---C-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence 1111 1 12333 39999998874 22 3688888 555543332 55678886 9999 88 8
Q ss_pred EEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcE-EEEecc
Q 001311 998 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1066 (1102)
Q Consensus 998 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v-~vW~~~ 1066 (1102)
+++++.++.++|| +.+++....+. + ...+. .+.|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88776543332 1 11244 788887 577787777765 788776
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=7.7e-13 Score=143.75 Aligned_cols=245 Identities=9% Similarity=0.060 Sum_probs=168.1
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+..+.....+++|+|+|+.+++++..++.|.+||..++ ... +..+...+.+++|+|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCc
Confidence 44566788999999999977899999999999999877 221 334567899999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEE----ec-------------CCCcEEEEe
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVWD 483 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s----~~-------------~d~~i~vWd 483 (1102)
++++...++.|.+||..+++.........+ ....+..++++++|+ ++++ |. ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888877789999999988764322111111 123567899999998 6776 33 134566666
Q ss_pred CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeecccc
Q 001311 484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
.. ++ +..+..+......++| +++++.+++.+.++.|.+|++...... ... ..+ ....
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~-----------------~~~-~~~~ 217 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQG-----------------VHF-TVEP 217 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEE-----------------EEE-CCSS
T ss_pred CC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCC-----------------eEe-eCCC
Confidence 54 44 4445556677888887 456677788888899999998732222 000 001 0011
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCC
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.....++++++|+.+++. ++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 233446677777755555 8899999986 777777765433 788999 68999999988763 444454443
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=3.6e-13 Score=150.28 Aligned_cols=222 Identities=11% Similarity=0.109 Sum_probs=145.7
Q ss_pred CCeeEEEEecCCCeEEEEE--------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311 347 SSPMSMDFHPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg--------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 418 (1102)
..+..++| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45677888 999865543 225789999998876432 2 4688999999
Q ss_pred CCCeEEEEECC---C--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC------------------
Q 001311 419 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 475 (1102)
Q Consensus 419 dg~~las~~~d---~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------------------ 475 (1102)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47788888876443 223334 999999999995 554442
Q ss_pred ---------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCC-------eEEEEEcCCCCCeeeecC
Q 001311 476 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 539 (1102)
Q Consensus 476 ---------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~~ 539 (1102)
...|.+||+.+++.+..+.. . .+..+.|+ ++| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999999987555654 3 67777774 666 777776542 44555544 222221111
Q ss_pred CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCcceEEEEcCCCCCCCcCe
Q 001311 540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 611 (1102)
Q Consensus 540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 611 (1102)
+ ..+.. ++|+|++|+.++.+ ..|++|| +++.......+ ...+..
T Consensus 216 ~----------------------~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~ 267 (347)
T 2gop_A 216 K----------------------VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ 267 (347)
T ss_dssp E----------------------ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred C----------------------cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence 1 11222 26666667766643 4688888 55543333322 235665
Q ss_pred -EEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 612 -IRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 612 -~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+.|+ |+ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8899 88 88899999999999 8643
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=6.2e-13 Score=147.39 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=182.5
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..|.++.|++++..++..+.++.++.|.-. .|. . +. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-------~--~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PWL-------E--IS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EEE-------E--EE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-----------------eeE-------E--Ee--ccCccccCcEECCCCC
Confidence 456677888888877777777777776210 000 0 11 1445678999999999
Q ss_pred eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC----CcEEEEEeecceeeeeec--ccccc
Q 001311 820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 892 (1102)
Q Consensus 820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~ 892 (1102)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 777776 78999999988776655545667899999999 88888877666 689999988776543332 24457
Q ss_pred ceeEEEecCCCEEEEEcC------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001311 893 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 964 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~ 964 (1102)
+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|||++|+++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887764 2445666655433211 11111 145789999999877664 468999
Q ss_pred EEEcCC-ceEeee-----e-ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCccc
Q 001311 965 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1037 (1102)
Q Consensus 965 iwd~~~-~~~~~~-----~-~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 1037 (1102)
+||..+ +..... . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..||. ..
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~~---~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGHM---LR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTCS---CB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-ccccc---cC
Confidence 999964 332211 1 11122 46788999999998888888899999998 5666666641110 00110 12
Q ss_pred ceEEEecCCCCCEEEEEecCC
Q 001311 1038 PLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1038 ~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
+..++|+| |+..|..++.++
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECG
T ss_pred cceEEECC-CCCEEEEEeCcc
Confidence 44899988 566665555553
No 185
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=2.9e-12 Score=140.00 Aligned_cols=204 Identities=11% Similarity=0.079 Sum_probs=142.1
Q ss_pred eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeee
Q 001311 809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS 884 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~ 884 (1102)
...++++|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 45688889999888774 4789999999999998886322 1 233333 566777888899999999876 55432
Q ss_pred eeccc----cccce-eEEEe-cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecC------CCCCCCCCCCcEEEEccCC
Q 001311 885 KLKGH----SKRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 885 ~l~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~spdg 952 (1102)
....+ ...+. ...|. ++|++++ .+.+|+|.+.|+.+........+... .+-. +.....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence 21111 12222 24665 6776555 55689999999977543211112110 1100 1244568889999
Q ss_pred cEEEEEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEE
Q 001311 953 IHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1019 (1102)
Q Consensus 953 ~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~ 1019 (1102)
+.+.+.. .+.|.++|+.+++.++.+.. ...+.+|+|++|++ +|++++ .++.|.|+|..+++.+.
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9998852 14799999999999999875 34788999999997 666654 48999999999999999
Q ss_pred EeC
Q 001311 1020 RIN 1022 (1102)
Q Consensus 1020 ~~~ 1022 (1102)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 988
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=8.9e-13 Score=145.17 Aligned_cols=241 Identities=11% Similarity=0.113 Sum_probs=173.5
Q ss_pred CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
.....+++. +++.+++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345677774 344444444 7999999999999988885 346789999998 776555554799999999999988776
Q ss_pred ecccc-----ccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001311 886 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 958 (1102)
Q Consensus 886 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~- 958 (1102)
+.... .....|++ .+++.+++.. .++.|.+||..+++.... +.. + .....++++++|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65332 14567888 4444444443 488999999998764322 211 2 134788999999987775
Q ss_pred eC----------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccC
Q 001311 959 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus 959 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1028 (1102)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 789999999999887765321 347899999999999988764 899999999886421 1122
Q ss_pred CCCCCCcccceEEEecCCCCCEEEEE----ecCCcEEEEeccCCCccc
Q 001311 1029 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus 1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~----~~Dg~v~vW~~~~~~~~~ 1072 (1102)
.+ .-.|-.++++|+++.+.++. ..++.|.+||.. ++-.+
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 11 13455899999777888887 778999999998 66333
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=7.2e-13 Score=141.19 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=186.5
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccc
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 893 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V 893 (1102)
.+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788888 8999999999999999998776 4789999999 899888 45788999998 899888887653 468
Q ss_pred eeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001311 894 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 971 (1102)
Q Consensus 894 ~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~ 971 (1102)
.++.+.+||+++++.+. ++.|..+|.+ ++......+. .+..........+++.++|.++++. .++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 88999999999999887 7777777764 3332222111 1100011234567889999999986 78999999998 9
Q ss_pred eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311 972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus 972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
+.+..+... ..+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+.. .-..+.++...+ +++++
T Consensus 156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence 988887642 456778889999999999888999999999999998886211 1111 112345777777 67787
Q ss_pred EEEe--cC------CcEEEEec-cCCCcccccCCCCCCCCCCC
Q 001311 1052 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1085 (1102)
Q Consensus 1052 ~s~~--~D------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1085 (1102)
++.. .. +..+++++ .+++-.|+.....+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 7763 11 24467777 56678888877777766665
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=4.8e-13 Score=164.65 Aligned_cols=249 Identities=10% Similarity=-0.004 Sum_probs=165.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
|...+..++|||||++|+.+.+.+| .|++||+.+++.+.. .+.. ..+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4456889999999998555544444 899999999987652 1111 136789999999
Q ss_pred CeEEEEECCCe----------------EEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecC-----CCc
Q 001311 421 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 478 (1102)
Q Consensus 421 ~~las~~~d~~----------------v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-----d~~ 478 (1102)
+.|+.++.++. |++|++.+++.. ........|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999887632 111122235566889999999995 444332 578
Q ss_pred EEEEeCCC------Ce-eeEEeecCCCCeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCC--eeeecCCCCeee
Q 001311 479 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGRWCT 545 (1102)
Q Consensus 479 i~vWd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~--~~~~~~~~~~v~ 545 (1102)
|++||+.+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--- 334 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE--- 334 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence 99999987 53 466677777666553 544 34555554442 3699999877542 122222211
Q ss_pred EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe--EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311 546 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 623 (1102)
Q Consensus 546 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 623 (1102)
...+..+.+++++.++++...++. |++|++.+++.+..+..+ ...+..++++|++..++.
T Consensus 335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 112333444444456777777774 666787678777777655 335778889999877664
Q ss_pred EEC----CCcEEEEEccCCc
Q 001311 624 STN----DNGIKILATSDGI 639 (1102)
Q Consensus 624 ~~~----dg~i~iwd~~~~~ 639 (1102)
... .++|+.||+.++.
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 432 4789999998773
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=1.5e-11 Score=133.67 Aligned_cols=281 Identities=11% Similarity=0.110 Sum_probs=191.6
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
+...+.+++++++|+.+++...++.|.+|+.. +......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 44678999999999977766667888888752 1111111111 3456889999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccce
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT 894 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~ 894 (1102)
|.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7889999986 3321 22223455789999999 8888887777889999998 5544322 233455688
Q ss_pred eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311 895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 973 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~ 973 (1102)
++++.++|++.++...++.|.+||. +++... ...... ...+..++++++|++.++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999998888877889999998 544321 111111 1256789999999977665 5789999999 6664
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
.. +....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+.++++ + ++.+.++
T Consensus 216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA 282 (299)
T ss_dssp EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence 43 323344678999999999997776667899999998 45433 332 1111 1 22447788 5 5666666
Q ss_pred EecCCcEEEEeccCCC
Q 001311 1054 GLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1054 ~~~Dg~v~vW~~~~~~ 1069 (1102)
.. .+.|..+++.+++
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 54 6788888876643
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=2.4e-11 Score=135.32 Aligned_cols=204 Identities=9% Similarity=0.004 Sum_probs=140.5
Q ss_pred eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34678889998888775 36799999 99988877 65322 24556645567777888999999999 777653
Q ss_pred eec-----ccccc-ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC----CCCCCCCcEEEEccCCcE
Q 001311 885 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIH 954 (1102)
Q Consensus 885 ~l~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~ 954 (1102)
... ....+ .....+.+++..++..+.++.+.+.|+.+........+...... ...+.....+++++|++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11112 12356777766655555788999999976532211111111100 000122345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEe
Q 001311 955 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 955 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
+.++. .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88842 25799999999999988864 33689999999999 777777 5899999999999999874
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2.1e-12 Score=142.21 Aligned_cols=273 Identities=10% Similarity=0.017 Sum_probs=184.7
Q ss_pred CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311 710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 789 (1102)
Q Consensus 710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 789 (1102)
.++.+.++|..+.........-. ...........+.+. +++.+++...++.|.+||.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~--------------------- 71 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDI--------------------- 71 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEET---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEEC---------------------
Confidence 46889999987643322111000 001122345667774 3444555555788888876
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCcEE
Q 001311 790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII 863 (1102)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l 863 (1102)
.+++.+... . .......++++++++.+++.. ++.|.+||..+++....+.... .....+++ . +++++
T Consensus 72 -~t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 72 -NTFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TTCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -cccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 333332221 1 235678999999996555553 8999999999998877765333 14667777 3 66666
Q ss_pred EEEe-CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC----------CcEEEEEcCCCcccceeeeec
Q 001311 864 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI 932 (1102)
Q Consensus 864 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~~~~ 932 (1102)
++.. .++.|.+||..+++.+..+... .....++++++|++++++..+ +.|.+||..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999888777643 345789999999988877655 789999998866432 2222
Q ss_pred CCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC-CCcEEEEE----eCCCeE
Q 001311 933 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYAC----FLDATV 1007 (1102)
Q Consensus 933 ~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~----s~Dg~I 1007 (1102)
..+ .....++|+||+++|.++.. .|.+||..+++.........+......++++| +++++++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 24689999999999888654 89999999888643222112246789999999 45555555 568999
Q ss_pred EEEEcCCceeEEEeC
Q 001311 1008 CVFSAANLKLRCRIN 1022 (1102)
Q Consensus 1008 ~vwd~~~~~~~~~~~ 1022 (1102)
.+||.+ |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99988876
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.7e-12 Score=156.77 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=169.5
Q ss_pred cccceEEEEEccCCceEEEeecCc-----eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311 738 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 812 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l 812 (1102)
+...+..++|||||++|+.+..++ .|++||+ .+|......+ ....+..+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~----------------------~tg~~~~~~~----~~~~~~~~ 176 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV----------------------DGAKELPDVL----ERVKFSCM 176 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET----------------------TTTEEEEEEE----EEECSCCE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC----------------------CCCCCCcccc----cCcccceE
Confidence 444688999999999998776643 7777776 3443322111 11225679
Q ss_pred EEecCCCeEEEEe-CCe----------------EEEEEcCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEeC---
Q 001311 813 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMD--- 868 (1102)
Q Consensus 813 ~~s~d~~~las~s-dg~----------------I~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~--- 868 (1102)
+|+|||+.|+.++ ++. |++|++.+++. +.....|...+..++|+| |+++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 255 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC 255 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence 9999999999887 544 99999988763 222233455678999999 8888888765
Q ss_pred --CCcEEEEEeec------ce-eeeeeccccccceeEEEecCCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCC
Q 001311 869 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 869 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
+..|++||+.+ +. ....+..+...+.. .|++||+.|+..+.+ +.|.+||+.+++......+.....
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 56899999987 43 35666667666655 588999888766553 359999998764322222211111
Q ss_pred CCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEE-e---CCCeEE
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-F---LDATVC 1008 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s---~Dg~I~ 1008 (1102)
...+..++|++++.++++. .++ .|++|++.+++.+..+. .+.+.+..+.++||++.++.. + ..++|+
T Consensus 335 ----~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 335 ----KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp ----SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred ----CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 0246778898777777774 666 46777887787666665 346788999999999766533 2 347899
Q ss_pred EEEcCCce
Q 001311 1009 VFSAANLK 1016 (1102)
Q Consensus 1009 vwd~~~~~ 1016 (1102)
+||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99999887
No 193
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=2.2e-12 Score=142.94 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=135.4
Q ss_pred CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 488 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~ 488 (1102)
..|.+++|++++..++..+.++.+++|. ++... .+..+...+.+++|+++++ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 3578889999998888888889999992 33232 4666777889999999998 67788889999999998888
Q ss_pred eeEEeecCCCCeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCCeeeec--CCCCeeeEEEEccCCceeeecccc
Q 001311 489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
.......+...+.++++ +++|.++++...+ +.|.+||..+......+. ....
T Consensus 78 ~~~~~~~~~~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-------------------- 135 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY-------------------- 135 (333)
T ss_dssp EEEEEECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC--------------------
T ss_pred EEEEeeCCCCCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC--------------------
Confidence 76655456778999987 4566777777666 689999987654432221 1112
Q ss_pred CceeEEEEcCCCCEEEEEeC------CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEc
Q 001311 563 RSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILAT 635 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~ 635 (1102)
.+..+.++++++.+++... .+.|..||..+++....... ...+..++|+|+++.|+++ +.++.|.+|+.
T Consensus 136 -~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 136 -CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIAL 211 (333)
T ss_dssp -CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred -cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence 3445556666655555443 35677777665554333221 1236789999999866555 45688999987
Q ss_pred cC
Q 001311 636 SD 637 (1102)
Q Consensus 636 ~~ 637 (1102)
.+
T Consensus 212 ~~ 213 (333)
T 2dg1_A 212 ED 213 (333)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=4e-13 Score=164.81 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=162.7
Q ss_pred CCCCeeEEEEecCCCeEEEEe------CCeEEEEEcCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCCc-----
Q 001311 805 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSS----- 871 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~~las~s------dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~----- 871 (1102)
|...+..++|||||++||.+. +.+|++||+.+++.+. ..+... ...++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 455688999999999999553 2579999999988651 112122 26899999 8999999988776
Q ss_pred --------EEEEEeecce----eeeeeccccccceeEEEecCCCEEEEEcCCC----cEEEEEcCCCcccceeeeecCCC
Q 001311 872 --------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 872 --------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
|++|++.++. ++.....|...+.++.|||||++|+..+.++ .|++|+..+++. ..+....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~- 271 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV- 271 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS-
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC-
Confidence 9999998765 4444455667788999999999998877665 677776554432 1222111
Q ss_pred CCCCCCCCcEEEEccCCcEEEE-Ee----CCeEEEEEcCCceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311 936 RTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus 936 ~~~~~~~v~~~~~spdg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
..+....+ ++|. ++. +. ++.|.+||+.+++. ...+....+...+..++|+ ++.++++...|+..+
T Consensus 272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 13455555 6777 554 43 47899999987653 1233322225568889998 788899999999988
Q ss_pred EEEcC-CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001311 1009 VFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1009 vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~-s~~---~Dg~v~vW~~~~~~ 1069 (1102)
||.++ +++....+. ++. ...+. .+.++| |+..++ +.+ ..++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88765 455555554 221 11133 677888 455555 333 34789999998877
No 195
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.3e-08 Score=126.57 Aligned_cols=559 Identities=9% Similarity=0.050 Sum_probs=309.4
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFG 424 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~la 424 (1102)
..|.++...++|.. |-.|+.++-+..||..+++..... .. . .. ...-....|.++.... +|.+.
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~~-~~-----~----~~--~~~l~~~~i~~i~~d~~~~g~lw- 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVYQ-YN-----P----ED--PQSLITNDVTHITSSVQAGKGLW- 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEEC-CC-----T----TC--SSSCSCSCEEEEEECSSTTSEEE-
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEeec-cc-----c----CC--CCCcccCcceEEEecCccCCCEE-
Confidence 46999999999973 334566657999999876543310 00 0 00 0001124689998887 66654
Q ss_pred EEECCCeEEEEEccCCceeeeEEE--ee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec------
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLE--ID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG------ 495 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~--l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~------ 495 (1102)
.++.++-|..||..+++... ... .. -....|.++...+++. |..+..++-|..||..+++.......
T Consensus 132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 45545558889987765322 100 00 1134688888887876 44455555688999887765432110
Q ss_pred -CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 496 -HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 496 -h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
....|.++.. +.++.+ ..|+.+ -|.+||..+..... +...... ........+.++...++|
T Consensus 208 l~~~~i~~i~~--d~~g~l-wigt~~-Gl~~~d~~~~~~~~-~~~~~~~-------------~~~l~~~~i~~i~~d~~g 269 (781)
T 3v9f_A 208 LPGNDVRCIYK--DTNGNI-WIGTSK-GLALFNANTETFTN-FHNNPGN-------------IHGALSSYIFSIKQLKDN 269 (781)
T ss_dssp -CCSSEEEEEE--CTTCCE-EEEETT-EEEEEETTTTEEEC-------------------------CCCCEEEEEECTTS
T ss_pred CCCCceeEEEE--cCCCCE-EEEeCC-cHheECCCCCcEEE-EEcCCCc-------------cccccCceEEEEEECCCC
Confidence 1345777764 455544 445544 68888876532211 1100000 000111244555555554
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEc-------CC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSID-------AD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 642 (1102)
. |..|+..+-|.++|..++....... .. -....|.++...++|.+. +|+.++-|..++..+. . +
T Consensus 270 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~ 345 (781)
T 3v9f_A 270 K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP-T-F 345 (781)
T ss_dssp E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC-S-C
T ss_pred C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC-c-c
Confidence 4 5556665678889987765432211 00 012357788888888755 4666677888876543 1 1
Q ss_pred eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311 643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 722 (1102)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 722 (1102)
..+......
T Consensus 346 ~~~~~~~~~----------------------------------------------------------------------- 354 (781)
T 3v9f_A 346 HTWSYSPTQ----------------------------------------------------------------------- 354 (781)
T ss_dssp EEEC----C-----------------------------------------------------------------------
T ss_pred eeeccCccc-----------------------------------------------------------------------
Confidence 111000000
Q ss_pred CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
.... ......|.++...++|. |..++.++-+..|+.....+ .......
T Consensus 355 ---~~~~------~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~----------------------~~~~~~~ 402 (781)
T 3v9f_A 355 ---MNES------SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA----------------------IYNKENR 402 (781)
T ss_dssp ---CCSS------CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE----------------------ECC----
T ss_pred ---cccC------CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE----------------------EEccCCC
Confidence 0000 01235688888888887 55566555577776532211 0000000
Q ss_pred CCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
......|.+++..+++.+.+...++.|..++..+++...... .....|.++...+ ++++.+ |+. +-|..||..++
T Consensus 403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence 113567899998888877664446789999987765433221 2345789998887 665444 555 55888998776
Q ss_pred eeeeeeccc-----cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 881 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 881 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
+........ ...|.++...++|.+.+....+| |..||..+++.. .... ........|.++...++|.+.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~--~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQ--YEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECT--TTTCSCSCEEEEEECTTSCEE
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccC--CCCCCCCeeEEEEECCCCCEE
Confidence 543322211 45788999988888766544355 788887764321 1111 111223567889999999877
Q ss_pred EEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311 956 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus 956 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
+...+|-+..||..+++....-...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+....-++..
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~~---- 626 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQG---- 626 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCSS----
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCcccc----
Confidence 76665544889988776433211111 1456889999999986664 4455 777888776553 34322222211
Q ss_pred cccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
....-++...+ +|. |..|+.+| +..++...
T Consensus 627 ~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 12112444444 454 55566676 56667654
No 196
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.1e-08 Score=124.66 Aligned_cols=574 Identities=13% Similarity=0.100 Sum_probs=314.6
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
...|.+|.-..+|. |-.|+.+| +..+|-.+ .. .+..... +.. ...-....|.++...++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~~~--~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---FI-----TYYKEEQ--SSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---EE-----EECCCSS--CSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc---eE-----EEEcCCC--CCc--cccccccccceEEEcCCCCEEEE
Confidence 46899999999997 55566655 56677432 11 1111000 000 00011346999999998884556
Q ss_pred EECCCeEEEEEccCCceeeeEEE-eec---cccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCeeeEEee-----
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE----- 494 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~----- 494 (1102)
|+.++-+..||..+++....... ... ....|.+|.... ++. |..+..++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775699999987653221000 000 123688888877 665 4445544568899987776543211
Q ss_pred cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~ 574 (1102)
-....|.++.. +.++ .|..++.++-|..||..+.... .+... +.. ........+.++..++++
T Consensus 160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~----------~~~---~~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHD----------PQN---PNSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTTC
T ss_pred CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecC----------CCC---cccCCCCceeEEEEcCCC
Confidence 11245776664 3343 4555666656888887653221 11100 000 000011245555566665
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311 575 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649 (1102)
Q Consensus 575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 649 (1102)
...+ ++.+ -|.+||..+++........ -....|.++...++|.+.+ |+..+-|.+++..+. ... .+...
T Consensus 223 ~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~~~-~~~~~- 296 (781)
T 3v9f_A 223 NIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQN-QFL-LPEQI- 296 (781)
T ss_dssp CEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC-----------
T ss_pred CEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCC-eee-eeecc-
Confidence 5444 4545 6899998776543221111 1123578888888876554 666567888887654 111 00000
Q ss_pred ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311 650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 729 (1102)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 729 (1102)
.|.. +.. .....
T Consensus 297 ------------~f~~-----------------------------------------------------~~~---~~~~~ 308 (781)
T 3v9f_A 297 ------------RFEF-----------------------------------------------------IRE---GDNNY 308 (781)
T ss_dssp -------------CEE-----------------------------------------------------ECB---CSSTT
T ss_pred ------------cccc-----------------------------------------------------ccC---CCCCC
Confidence 0000 000 00000
Q ss_pred cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311 730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 809 (1102)
Q Consensus 730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i 809 (1102)
......|.++...++|. |-.++.++-|..++.....+ ..+...... .....-....|
T Consensus 309 ------~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~~----~~~~~l~~~~v 365 (781)
T 3v9f_A 309 ------SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF------------HTWSYSPTQ----MNESSLSNKVV 365 (781)
T ss_dssp ------SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC------------EEEC----C----CCSSCCSSSCE
T ss_pred ------CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc------------eeeccCccc----cccCCCCCcce
Confidence 11346788999999887 55566565666666432211 001000000 00000134568
Q ss_pred eEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311 810 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 810 ~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 886 (1102)
.+++..++|.+.+...++.|..|+..++...... ......|.++...+ ++++.+ |+.++-|..||..+++.....
T Consensus 366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEec
Confidence 9999988887665554677999998754332211 12345688898887 665554 777777999998776543322
Q ss_pred c--cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311 887 K--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 964 (1102)
Q Consensus 887 ~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~ 964 (1102)
. .....|.++...++|.+.+.. .. -|.+||..+++.... ............|.++...++|.+.+...++.|.
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~ 518 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWIGT-HA-GVFVIDLASKKVIHH---YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG 518 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEEEE-TT-EEEEEESSSSSCCEE---ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred cCCCCCCeEEEEEECCCCCEEEEE-CC-ceEEEeCCCCeEEec---ccCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence 1 234678889888887665544 44 488999877543221 1111111112467889999999987776656688
Q ss_pred EEEcCCceEeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311 965 IFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
.||..+++........ -....|.++...++|.+.++. .+|.|..||..+++.. .+....-++. ..+. ++..
T Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~----~~i~--~i~~ 590 (781)
T 3v9f_A 519 IYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPN----THIR--AISE 590 (781)
T ss_dssp EECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSC----CCCC--EEEE
T ss_pred EEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCC----ceEE--EEEE
Confidence 8998777654332111 124678999999999866644 4776688998877643 3332222222 2244 6766
Q ss_pred cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
.+ +|.+.++ +. +.|..++..+..
T Consensus 591 d~-~g~lW~~-t~-~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 591 DK-NGNIWAS-TN-TGISCYITSKKC 613 (781)
T ss_dssp CS-SSCEEEE-CS-SCEEEEETTTTE
T ss_pred CC-CCCEEEE-cC-CceEEEECCCCc
Confidence 66 4555444 43 446667765443
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=3.3e-12 Score=138.77 Aligned_cols=234 Identities=8% Similarity=-0.035 Sum_probs=162.4
Q ss_pred CCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 805 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 805 ~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
+.....+++|+|+++ +++++. ++.|..|+..++ ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345578999999998 566666 799999999887 566666778899999999 888888777778999999977765
Q ss_pred eeeeccc----cccceeEEEecCCCEEEEEcC-----------------CCcEEEEEcCCCcccceeeeecCCCCCCCCC
Q 001311 883 KSKLKGH----SKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 941 (1102)
Q Consensus 883 ~~~l~~h----~~~V~~l~~s~d~~~l~s~s~-----------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 941 (1102)
....... ...+.+++++|+|+++++.+. .+.|..++.. ++. ... .. .. .
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~~--~~-~~---~ 172 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL---SAP--IR-DR---V 172 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE---EEE--EC-CC---S
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE---EEe--ec-CC---C
Confidence 4333221 235678999999999987431 2344444443 221 111 11 11 2
Q ss_pred CCcEEEEccCCcEEEEE-eCCeEEEEEcC-CceE---eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 942 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 942 ~v~~~~~spdg~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
....++|+|||+.+++. .++.|.+|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+||.+ ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 45789999999998554 56899999997 5554 3333 2456677899999999977666 8899999986 77
Q ss_pred eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311 1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
.+..+. .+.+ +.+++|...|++.|.+++.+ .+.-++..+.
T Consensus 248 ~~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVL----TPQT-------TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEEE----CSSC-------CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred EEEEEE----CCCC-------ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 776665 2211 33788953367778877765 3444444443
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=4.7e-11 Score=129.73 Aligned_cols=237 Identities=11% Similarity=0.079 Sum_probs=163.8
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
..+..++++++|..+++...++.|..|+.. +......+. .....+..++++++++
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~--~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-----------------------GIIKEYTLP--NPDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-----------------------CcEEEEeCC--CcCCCceeeEECCCCC
Confidence 457789999999877776667888888742 111111111 1345688999999998
Q ss_pred eEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccceeE
Q 001311 820 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 896 (1102)
Q Consensus 820 ~las~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l 896 (1102)
++++.. ++.|.+||. +++.... ...+...+..+++++ +++++++...++.|.+||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 887776 789999998 5544332 333456789999999 7888877777789999998 6655432 33345568899
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEee
Q 001311 897 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 975 (1102)
Q Consensus 897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~ 975 (1102)
++.++|++.++...++.|.+||. +++... ..... . ...+..++++++|+..++. .++.|..||. +++. .
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-P---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-C---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence 99999998888777889999998 544221 11111 1 1357899999999977665 6789999998 4543 3
Q ss_pred eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
.+....+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3333344678999999 8888777655 5677777876654
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=6e-13 Score=163.22 Aligned_cols=248 Identities=11% Similarity=-0.035 Sum_probs=159.7
Q ss_pred CCCCeeEEEEecCCCeEEEEE----ecCCeEEEEeCCCCeeE-EeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg----~~d~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
|...+.+++|||||++|+++. +.+.+|++||+.+++.+ .. .+... ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 556789999999999855443 33468999999998753 10 01111 1267999999
Q ss_pred CCeEEEEECCCe-------------EEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC----cEEE
Q 001311 420 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV 481 (1102)
Q Consensus 420 g~~las~~~d~~-------------v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~----~i~v 481 (1102)
|+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||+. |+.++.++ .|++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999998776 999999987632 222233456678999999999995 44444444 6777
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCcee
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 556 (1102)
||..+++ ...+..+...+....+ ++|.+++... .++.|.+||+.++.. ...+..+.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------------- 317 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--------------- 317 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---------------
T ss_pred EcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---------------
Confidence 7765554 4445556555655554 2334444444 258899999877542 12221111
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC-CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC----CCcEE
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIK 631 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~ 631 (1102)
....+..++++ ++..+++...|+..++|.+. +++....+..+. ...+..++++|++..++.... .++|+
T Consensus 318 ----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 318 ----SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp ----SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred ----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 01123333444 33567778889988888654 455555554331 235677889999987774433 47899
Q ss_pred EEEccCCc
Q 001311 632 ILATSDGI 639 (1102)
Q Consensus 632 iwd~~~~~ 639 (1102)
+||+.++.
T Consensus 392 ~~d~~~g~ 399 (695)
T 2bkl_A 392 KTSVSTGK 399 (695)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99998773
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=3.8e-12 Score=136.17 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=167.4
Q ss_pred CeeEEEEecCCCeEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 808 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 808 ~i~~l~~s~d~~~la-s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999776 434 78999999866543322233345688999999 788666555 88999999776543222
Q ss_pred eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 964 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~ 964 (1102)
.......+.+++++++|+++++...++.|.+|+..+.... .....+ ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTG----LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----ECCCCS----CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----eecccc----CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2223356889999999998888888889999976543221 111111 1256889999999977665 578999
Q ss_pred EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEec
Q 001311 965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1044 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~ 1044 (1102)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... +. ..+ ...+.+++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence 99998776544322 234678999999999887877778999999987654432 11 011 0234589999
Q ss_pred CCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1045 PQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1045 p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+ +++++++...++.|+++++...+
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8 57899999999999999997765
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=5.9e-12 Score=134.66 Aligned_cols=239 Identities=8% Similarity=0.030 Sum_probs=163.2
Q ss_pred CeeEEEEecCCCeEEE-EEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 348 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 348 ~v~~v~~spdg~~lla-sg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 566 55778999999976554322 112334568899999999966666
Q ss_pred ECCCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~ 505 (1102)
. ++.|.+||..++.... +. .....+.+++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999988754321 22 2335789999999998 6777777889999986665544333333345667776
Q ss_pred eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585 (1102)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 585 (1102)
+++|.++++...++.|.+||.............. .....++++++|..+++...++.
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI---------------------TAPWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC---------------------CSEEEEEECTTCCEEEEETTTSC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCC---------------------CCceEEEECCCCCEEEEECCCCc
Confidence 4566777777778899999987543222111111 23455666776666666667889
Q ss_pred EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 586 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 586 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
|.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654332 22 122235788999999998888888999999987655
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=7.2e-12 Score=136.89 Aligned_cols=280 Identities=9% Similarity=0.039 Sum_probs=187.2
Q ss_pred EEEccCCceEEEeec-----CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 745 LIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 745 ~~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
....|+++.+++... ++.+.+.|. .+++++.....+ ..+ .++++|||+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~ 90 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGS 90 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSS
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCC
Confidence 345688888777765 466776664 344433322211 222 399999999
Q ss_pred eEEEEe-----------CCeEEEEEcCCCceeeeecCCC-------CCeeEEEEecCCCcEEEEEeC--CCcEEEEEeec
Q 001311 820 YVMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRV 879 (1102)
Q Consensus 820 ~las~s-----------dg~I~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~ 879 (1102)
+++++. ++.|.+||..+++.+.++.... .....++|+| ||++|+++.. ++.|.++|+.+
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC
Confidence 887764 4679999999999888875321 2467899999 8888887764 68999999999
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCC-cEEEEc-cCCcEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQFH-QDQIHFL 956 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-pdg~~l~ 956 (1102)
++.+.++.-... ...+....+.+++.+.||++.+.++.+ ++..... ..... .....+ ....|. ++|+++.
T Consensus 170 ~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~ 242 (386)
T 3sjl_D 170 KAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVW 242 (386)
T ss_dssp TEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEE
T ss_pred CcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEE
Confidence 999888753211 233444456777888899998888876 4432111 01111 000122 224664 7898888
Q ss_pred EEeCCeEEEEEcCCce--Eeeeecc--------CCCCCCeeEEEEcCCCcEEEEEeC----------CCeEEEEEcCCce
Q 001311 957 VVHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLK 1016 (1102)
Q Consensus 957 ~~~d~~i~iwd~~~~~--~~~~~~~--------~~h~~~v~~l~~spd~~~l~s~s~----------Dg~I~vwd~~~~~ 1016 (1102)
++.++.|++.|..+.. .+..+.. .-.......++++++++.|+.+.. ...|.+.|+.+++
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 8888999999997654 3333320 001223456788999999888754 2579999999999
Q ss_pred eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCCc
Q 001311 1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESEG 1070 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~~ 1070 (1102)
.+.++. +... .+ ++.++++...+|++. ..++.|.++|..+++.
T Consensus 323 v~~~i~----vg~~-----~~--~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 323 RLAKFE----MGHE-----ID--SINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEEE----EEEE-----EC--EEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEE----CCCC-----cc--eEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 999987 3222 44 899999533366554 5589999999999883
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=3.2e-11 Score=134.52 Aligned_cols=206 Identities=12% Similarity=0.081 Sum_probs=142.6
Q ss_pred eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
...++++|||++++++. ++.|.+.|+.+++.+.++.... . ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 34567888888888765 3689999999999888876422 1 334443446666677888888888865554422
Q ss_pred ----eccccccc-eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC----CCCCCCcEEEEccCCcEEE
Q 001311 886 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 956 (1102)
Q Consensus 886 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~ 956 (1102)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........+++++|++++.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22112222 24678999988887788899999998764422111111110000 0001234579999999888
Q ss_pred EEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEe
Q 001311 957 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 957 ~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
+.. .+.|.++|..+.+.+..+... .....++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 752 247999999999999988742 3689999999999 888888 5899999999999999887
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=1e-10 Score=130.23 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=162.6
Q ss_pred EEEEecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCcEEEEEeC--CC
Q 001311 811 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 870 (1102)
Q Consensus 811 ~l~~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 870 (1102)
.++++|||++++++. ++.|.+||..+.+.+.++... ......++|+| |+++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999998887776432 12356899999 8999888874 57
Q ss_pred cEEEEEeecceeeee-eccccccceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeee-ecCCCCCCCCCCCcEEE
Q 001311 871 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 871 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 947 (1102)
.|.++| .+++.+.. +.... ++.+.+++ +.+++.+.||.+.++|. +++....... ....+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99988877 54321 24555665 45677788999999999 6654311100 0011110 0112345
Q ss_pred EccCCcE-EEEEeCCeEEEEEcCCce--EeeeeccCC--------CCCCeeEEEEcCCCcEEEEEeC----------CCe
Q 001311 948 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1006 (1102)
Q Consensus 948 ~spdg~~-l~~~~d~~i~iwd~~~~~--~~~~~~~~~--------h~~~v~~l~~spd~~~l~s~s~----------Dg~ 1006 (1102)
+.+++.. ++++.++.+.+.|+.++. .+..+.... .......++++||++.|+++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6676554 444677889999987653 223222100 1223445889999998887654 357
Q ss_pred EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001311 1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus 1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
|.++|..+++.+.++. .+. .+..+.|+| |++ +++++. .++.|.|||+.+.+
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999999886 221 233799999 567 677776 58999999999988
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.45 E-value=1.4e-11 Score=131.22 Aligned_cols=234 Identities=12% Similarity=0.096 Sum_probs=167.0
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311 361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 439 (1102)
Q Consensus 361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~v~vwd~~~ 439 (1102)
+|++++.|+.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998864 23333 4688999999999999 45788999999 7
Q ss_pred CceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEeec------CCCCeEEEeeeecCCc
Q 001311 440 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 511 (1102)
Q Consensus 440 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ 511 (1102)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+.. +......+. ...+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776654 3333 34788999999999 6777766 778888884 8888877642 112233333 35778
Q ss_pred cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 591 (1102)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 591 (1102)
+++++...++.|..||.. ++.+..+.... ....+...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~----------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG----------------------TPFSSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS----------------------CCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC----------------------CccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 67666655431 1223444556677888888889999999
Q ss_pred CCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEECC--------CcEEEEEccCCccceeeccc
Q 001311 592 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFEN 647 (1102)
Q Consensus 592 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~ 647 (1102)
.+|+.+..+.... ....+..+...++|..+++.... +..+++.+....+.+-.+..
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 9999998886332 12235678889999988887521 23456666333255544443
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2.9e-11 Score=149.30 Aligned_cols=242 Identities=13% Similarity=0.086 Sum_probs=159.1
Q ss_pred CCeeEEEEecCCCeEEEEe-C-C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc---------
Q 001311 807 EAVPCFALSKNDSYVMSAS-G-G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS--------- 871 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-d-g----~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~--------- 871 (1102)
..+..++|||||++||.+. + | +|++||+.+++.+.... +...+..++|+| | +.|+.+..++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccC
Confidence 4678899999999999876 2 3 59999999988754311 122236789999 7 88887776654
Q ss_pred -----EEEEEeecce----eeeeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCC
Q 001311 872 -----IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRT 937 (1102)
Q Consensus 872 -----v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~ 937 (1102)
|++|++.++. ++.....|...+.++.|||||++|+..+.++ .|++||+.++.......+....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--- 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL--- 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS---
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC---
Confidence 8999987654 3333333444588999999999998877543 7999999876211011222111
Q ss_pred CCCCCCcEEEEccCCcEEEEE-e----CCeEEEEEcCCce-EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 938 PTAQSDTRVQFHQDQIHFLVV-H----ETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 938 ~~~~~v~~~~~spdg~~l~~~-~----d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
..+... ++|+|+.|+.. . ++.|.+||+.++. ....+.. .+...+..++|+ ++.++++...|+..+||.
T Consensus 317 ---~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 317 ---KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 123333 45899888874 3 3469999998852 3333332 445567788887 677888899999888876
Q ss_pred cC-CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec---CCcEEEEeccCCC
Q 001311 1012 AA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS---DGGVHVFEPLESE 1069 (1102)
Q Consensus 1012 ~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~---Dg~v~vW~~~~~~ 1069 (1102)
++ ++.....+. ++. . ..+..+.++|+...++++.++ .++|++||+.+++
T Consensus 391 ~~~~g~~~~~l~----~~~---~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVS----LPG---I--GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECB----CSS---S--CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeecc----CCC---C--eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 65 455555554 221 1 122378888843334444433 4789999998876
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=5.6e-10 Score=121.18 Aligned_cols=278 Identities=9% Similarity=0.056 Sum_probs=188.0
Q ss_pred cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
....+.+++++++|+..++...++.|.+|+.. +......+.. ....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--PDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--TTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--CCCcceeEEECCC
Confidence 34578899999999977776677888888752 1111111111 3356889999999
Q ss_pred CCeEEEEe-CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-eeccccccce
Q 001311 818 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 894 (1102)
Q Consensus 818 ~~~las~s-dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 894 (1102)
+++.++.. ++.|..||.. ++... .+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98777766 6889999987 55432 2232446789999998 88888877668899999987 55432 2333455688
Q ss_pred eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311 895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 973 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~ 973 (1102)
++++.+++++.++...++.|.+|+. .++... .... .. ...+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999998777777888999998 433221 1111 11 1356899999999877775 4668999998 5554
Q ss_pred eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311 974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus 974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
.... ...+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . ..+.++.+.+ ++++.++
T Consensus 221 ~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 4332 2234567899999999997777666799999998 45443 232 1111 1 2234788888 4666665
Q ss_pred EecCCcEEEEecc
Q 001311 1054 GLSDGGVHVFEPL 1066 (1102)
Q Consensus 1054 ~~~Dg~v~vW~~~ 1066 (1102)
.. . .|..+++.
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 44 4 77777653
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.38 E-value=3.5e-11 Score=148.61 Aligned_cols=282 Identities=11% Similarity=0.039 Sum_probs=172.4
Q ss_pred cCCCCccccccCCC---ccceEecccCC-CCCccccccCC---CcccccceEEEEEccCCceEEEeecC-----ceEEee
Q 001311 699 LADVKPRITEESND---KSKVWKLTELS-EPNQCRSLRLP---ENLRATKISRLIFTNSGNAILALASN-----AIHLLW 766 (1102)
Q Consensus 699 ~~~~~~l~~~~~d~---~i~~w~~~~~~-~~~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~d-----g~i~iw 766 (1102)
.+++++++....++ ...+|...... .....+.+.-+ ..++...+..+.|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 36777766544433 35667665320 00111111000 12233478899999999998887654 357777
Q ss_pred eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CC--------------eEEE
Q 001311 767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISL 831 (1102)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg--------------~I~i 831 (1102)
|+ .+|..+.... +...+..++|+|| +.|+.++ ++ .|++
T Consensus 195 dl----------------------~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 195 GV----------------------ADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp ET----------------------TTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred EC----------------------CCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 65 3443322111 1112357899999 9888876 43 3899
Q ss_pred EEcCCCce--eeee--cCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecc--eeeeeeccccccceeEEEec
Q 001311 832 FNMMTFKT--MATF--MPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH 900 (1102)
Q Consensus 832 wd~~~~~~--~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~ 900 (1102)
|++.++.. ...+ ..+...+..+.||| ||++|+..+.++ .|++||+.++ ++...+..+...+.... +|
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 99987652 2223 23334588999999 898888877554 8999999887 32455655665565553 58
Q ss_pred CCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-CceEe
Q 001311 901 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV 974 (1102)
Q Consensus 901 d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~-~~~~~ 974 (1102)
+|+.|+..+.+ +.|.+||+.++. ... ..+...+. ..+..+.++ ++.++++ ..++..+||.+. +++..
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~--~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PRF--DTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-CEE--EEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-ccc--EEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 99988877754 459999998753 111 11222221 235567777 4555555 478876666554 45555
Q ss_pred eeeccCCCCCCeeEEEEcCCCcEEEEE-e---CCCeEEEEEcCCcee
Q 001311 975 KQWVPRESSAPITHATFSCDSQLVYAC-F---LDATVCVFSAANLKL 1017 (1102)
Q Consensus 975 ~~~~~~~h~~~v~~l~~spd~~~l~s~-s---~Dg~I~vwd~~~~~~ 1017 (1102)
..+.. .+...+..+.++||++.|+.. + ..++|++||+.+++.
T Consensus 399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55442 235678999999998866533 2 347899999999874
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=3.1e-10 Score=124.29 Aligned_cols=257 Identities=14% Similarity=0.093 Sum_probs=162.5
Q ss_pred ccCCCCeeEEEEecCCCeEEEE-------EecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311 343 LNQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 415 (1102)
Q Consensus 343 ~~h~~~v~~v~~spdg~~llas-------g~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 415 (1102)
...-....+++|+++|+ ++++ +..++.|.+||..+++..... . ....++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--------------~~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K--------------PEVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C--------------CEETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e--------------cccCCCCCCCceEE
Confidence 33455778999999998 4666 577899999998887654310 0 00123456799999
Q ss_pred EccC-CCeEEEEECCCeEEEEEccCCceeeeEEEe-e-ccccCEEEEEEcCCCCeeEEEEecCC---------------C
Q 001311 416 WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDD---------------K 477 (1102)
Q Consensus 416 ~spd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d---------------~ 477 (1102)
++++ |+++++.. .+.|.+||.+ ++........ . .+...+.+++++++|. ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4479999998 6532210110 0 1124588999999998 56665544 5
Q ss_pred cEEEEeCCCCeeeEEeecCCCCeEEEeee--ecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc
Q 001311 478 TIKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554 (1102)
Q Consensus 478 ~i~vWd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1102)
.|..||.. ++..... .+......++++ .+++++.+ ++...++.|.+||+......... ..+.-
T Consensus 154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~----- 219 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGH----- 219 (314)
T ss_dssp EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEE-----
T ss_pred eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEE-----
Confidence 67778765 5544333 234456777774 11566555 44456899999987621111000 00000
Q ss_pred eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEE
Q 001311 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKIL 633 (1102)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw 633 (1102)
+.++.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++++.|++++ .++.|..|
T Consensus 220 --~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 220 --IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp --CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred --CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 000000234557777777777777788999999998787776665442 3588999999999665554 56789999
Q ss_pred EccC
Q 001311 634 ATSD 637 (1102)
Q Consensus 634 d~~~ 637 (1102)
++..
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8764
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=2.5e-09 Score=115.98 Aligned_cols=240 Identities=11% Similarity=0.022 Sum_probs=162.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
....+.++++.++|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456889999999998 46666678999999987 544321 1223346799999999999888
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE-EeecCCCCeEEE
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 503 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~-~~~~h~~~v~~v 503 (1102)
+...++.|..||.. ++.. . ..+......+.++++.+++. ++++...++.|..||.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999988 5432 1 12333446789999999998 67777768899999987 66543 233344567777
Q ss_pred eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 583 (1102)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 583 (1102)
++ ++++.+.++...++.|..||. ++.. ..+.... .......++++++++.+++....
T Consensus 152 ~~--d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~-------------------~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 152 TL--GSDNALWFTENQNNSIGRITN-TGKL-EEYPLPT-------------------NAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp EE--CTTSSEEEEETTTTEEEEECT-TCCE-EEEECSS-------------------TTCCEEEEEECTTSSEEEEETTT
T ss_pred EE--CCCCCEEEEecCCCeEEEECC-CCcE-EEeeCCC-------------------CCCCcceEEECCCCCEEEEccCC
Confidence 76 456676666666788999987 3222 1111100 01234556666666666666667
Q ss_pred CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
+.|.+||. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus 209 ~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 78999998 5554332 22222345778999999987776656788999886
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=1.8e-10 Score=126.17 Aligned_cols=245 Identities=8% Similarity=0.036 Sum_probs=162.3
Q ss_pred cceEEEEEccCCceEEE-------eecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC-CCCCCCCeeE
Q 001311 740 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 811 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~i~~ 811 (1102)
....+++|+++|+.+++ ...++.|.+|+... +........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence 35578999999987777 56778888887532 221110000 0013356889
Q ss_pred EEEecC-CCeEEEEeCCeEEEEEcCCCceeee-ecC----CCCCeeEEEEecCCCcEEEEEeCC---------------C
Q 001311 812 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 870 (1102)
Q Consensus 812 l~~s~d-~~~las~sdg~I~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g 870 (1102)
++++++ ++++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665433 221 123588999999 88887776655 5
Q ss_pred cEEEEEeecceeeeeeccccccceeEEEe----cCCCEEE-EEcCCCcEEEEEcC-CCcccceeeeecCCCCCCCCCCCc
Q 001311 871 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLV-SSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 944 (1102)
Q Consensus 871 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1102)
.|..||.. ++... +..+......++|+ +|++.|. +...++.|.+|+++ .++...........++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777654 44332 33344456789999 9997654 45667899999986 33322222222222211 02457
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEE-EEeCCCeEEEEEcCC
Q 001311 945 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1014 (1102)
Q Consensus 945 ~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-s~s~Dg~I~vwd~~~ 1014 (1102)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++||++|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988875 67899999998777666554 3457899999999999555 445568899999864
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=3.6e-10 Score=122.96 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=156.5
Q ss_pred eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
+..+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSC
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCC
Confidence 44466678899999999988999999999999998 454321 233456789999999999
Q ss_pred eEEEEECCCeEEEEEccCCceeeeEEE-eecc-ccCEEEEEEcCCCCeeEEEE----ecC-------------CCcEEEE
Q 001311 422 LFGVAYSRHIVQIYSYHGGDEVRQHLE-IDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 482 (1102)
Q Consensus 422 ~las~~~d~~v~vwd~~~~~~~~~~~~-l~~h-~~~V~~v~~s~d~~~~~l~s----~~~-------------d~~i~vW 482 (1102)
++++...++.|.+|+.+ ++. ..+.. ..+. ...+.++++.++|+ +++| |.. .+.|..|
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred EEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 77766667889999986 442 22111 1111 13477899999998 6665 332 2568888
Q ss_pred eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC------CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCcee
Q 001311 483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 556 (1102)
|..+++..... .....+.++| +++++.|+.+... +.|.+|++.... +... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87777655433 3445677887 4566767666554 789999887533 1100 00
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 631 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 631 (1102)
+..........++++++|+ |.++..+ .|.+|+. .++.+..+.... .+.+++|+++++.|.+++.++..+
T Consensus 233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 0000111233466777777 4444444 5999998 577777776543 378899999999999888764433
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=7.3e-10 Score=125.30 Aligned_cols=250 Identities=8% Similarity=-0.010 Sum_probs=164.8
Q ss_pred CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001311 807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 883 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 883 (1102)
.....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|++++.++ .|++|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999777666 68999999988776555443 23334 99999 888888888766 7888887765443
Q ss_pred eee----ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCc-EEEEccC-CcEEEE
Q 001311 884 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV 957 (1102)
Q Consensus 884 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~spd-g~~l~~ 957 (1102)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|+ +.++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566789999995555555777889999999876421110000 111110 1113 9999996 554444
Q ss_pred E-eCCeEEEEEcCCceEeeeeccCC-------------CCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311 958 V-HETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 958 ~-~d~~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
. .++.|+.|+.... +..+.... .-.....++|+++|+++++-+ .++.|+.|++.+++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 3 5788999987654 22221110 024588999999999888777 78999999988887654332
Q ss_pred CCccc--CCC--CCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1023 PSAYL--PAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1023 ~~~~~--~~g--h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
..... ..+ ....-..|..++++++ +.++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 10000 000 0011134778999994 888888888889988876
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=7.4e-10 Score=123.52 Aligned_cols=257 Identities=12% Similarity=0.110 Sum_probs=166.3
Q ss_pred cCCCeEEEEEecC----CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE----
Q 001311 356 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 427 (1102)
Q Consensus 356 pdg~~llasg~~d----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 427 (1102)
|++++++++...+ +.|.+.|..+++.+.... .+ ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence 4566666666554 799999999999887522 12 224 799999999998876
Q ss_pred ------CCCeEEEEEccCCceeeeEEEee--c---cccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEEee
Q 001311 428 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE 494 (1102)
Q Consensus 428 ------~d~~v~vwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~~~ 494 (1102)
.++.|.++|..+++.+..+. +. . .......++|+|||+. ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 46789999999988766432 21 0 1123467899999995 44443 36889999999999998886
Q ss_pred cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee----eecCCCCee-eEEEEccCCceeeecc---------
Q 001311 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWC-TTMAYSADGTRTYQGF--------- 560 (1102)
Q Consensus 495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v-~~~~~s~~~~~~~~~~--------- 560 (1102)
--.. ....+... ..+++.+.||.+.+.+..+.+... .+......+ ..+.+.+++..++...
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 3221 11222222 455666677777777774333221 111111110 1122233332211100
Q ss_pred ------------------------ccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCcceEEEEcCCCCC
Q 001311 561 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL 606 (1102)
Q Consensus 561 ------------------------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 606 (1102)
.......+.++++++++++... ++.|.++|..+.+.+..+....
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 0011122678888888777642 3579999999999999887543
Q ss_pred CCcCeEEEcCCCC-EEEEEE-CCCcEEEEEccCCccceeec
Q 001311 607 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF 645 (1102)
Q Consensus 607 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 645 (1102)
...+++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 367899999999 888888 5899999999998 555543
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=1.7e-09 Score=122.39 Aligned_cols=255 Identities=10% Similarity=0.037 Sum_probs=165.8
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
..+..|+|+|+|+ |+++...++.|++||..+++.... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999998 688888889999999988766542 112 22233 9999999999998
Q ss_pred ECCC--eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE----eecCCCC
Q 001311 427 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 499 (1102)
Q Consensus 427 ~~d~--~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~----~~~h~~~ 499 (1102)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999887654332211222 4567889999996553 34466688999999987764332 2233222
Q ss_pred e--EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 500 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 500 v--~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
- ..++|++. ++.++++-..++.|+.|+.+.. ...+.+..... . ..+| ......-.....++++++++++
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27887542 3566777777899999987642 22221111000 0 0000 0000001235678888888877
Q ss_pred EEEe-CCCeEEEEECCCcceEEEEcCCC-------------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311 578 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 635 (1102)
Q Consensus 578 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 635 (1102)
++-. .++.|+.|++.++... .+.+.. .......+++++++.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 7899999998777643 333221 1234678999999888888888888888764
No 216
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.28 E-value=1.1e-10 Score=129.31 Aligned_cols=274 Identities=7% Similarity=-0.015 Sum_probs=177.4
Q ss_pred cceEEEEEccCCceEEEeec--CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311 740 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 817 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 817 (1102)
.....++++++|+.+++... ++.++||.+.. ++.. -|- ... .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS-----GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence 46789999999998777542 34366776531 1110 000 000 001125567899999999
Q ss_pred CCeEEEEe------CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCcEEEEEe---CCCcEEEEEeeccee
Q 001311 818 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 882 (1102)
Q Consensus 818 ~~~las~s------dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~ 882 (1102)
++++++-. ++.|.+||+.+++.++.+..+ ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999998877665432 235689999983455555555 678999999998887
Q ss_pred eeeeccccccce-eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001311 883 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 960 (1102)
Q Consensus 883 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d 960 (1102)
.+.+.+|..... ...+..+|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1456678888888888888876642 23679999999988885 33
Q ss_pred C-eEEEEEcCC---ce-----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCC
Q 001311 961 T-QLAIFETTK---LE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus 961 ~-~i~iwd~~~---~~-----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
+ .+..++... +. ....+...++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~--- 288 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE--- 288 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG---
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC---
Confidence 3 555554321 10 00001111223466789999999999999899999999986676543332 11
Q ss_pred CCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311 1032 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus 1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
...+|.+++|.+ ++.++++.+..+.+.+|.
T Consensus 289 --~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 --KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp --GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred --ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 114566899998 578888877666554443
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=2.4e-10 Score=125.40 Aligned_cols=198 Identities=9% Similarity=-0.018 Sum_probs=127.4
Q ss_pred eEEEEecCCCeEEEEe---CCeEEE--EEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----
Q 001311 810 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----- 879 (1102)
Q Consensus 810 ~~l~~s~d~~~las~s---dg~I~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----- 879 (1102)
..++++|||++++++. ++.|.+ +|..+ +.++.... . ..+.|++.+.+++.+.||.+.+.|+.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4577888888888775 256778 88876 44443211 1 223353455666677889988888876
Q ss_pred ceeeee----eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC----CCCCCCCCcEEEEccC
Q 001311 880 DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQD 951 (1102)
Q Consensus 880 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~spd 951 (1102)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ....+.....++|+||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443321 11112222 3 667777666666 899999987543211111111000 0000012233789999
Q ss_pred CcEEEEE-e-C--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcE-EEEEe-CCCeEEEEEcCCceeEE
Q 001311 952 QIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRC 1019 (1102)
Q Consensus 952 g~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s-~Dg~I~vwd~~~~~~~~ 1019 (1102)
|+++.++ . . +.+.++|+.+++.+..+... .....++|+|||++ +++.. .++.|.|+|+.+++.+.
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 9998874 3 2 36779999999999888653 36899999999985 55555 59999999999999999
Q ss_pred EeC
Q 001311 1020 RIN 1022 (1102)
Q Consensus 1020 ~~~ 1022 (1102)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 887
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=1.3e-09 Score=117.97 Aligned_cols=229 Identities=10% Similarity=0.063 Sum_probs=149.3
Q ss_pred ceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 741 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 741 ~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
-..+..|++++. .+++...++.|..|+... +...... ....+.+++++++|+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG 66 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence 345788888654 444445578888887532 2211111 345688999999999
Q ss_pred eEEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEeCC---------CcEEEEEeecceeeeee
Q 001311 820 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKL 886 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l 886 (1102)
++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.||.+........+
T Consensus 67 l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 144 (297)
T 3g4e_A 67 YVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY 144 (297)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE
T ss_pred EEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE
Confidence 5554 577899999987765433221 123478899999 88877654322 23455655432222333
Q ss_pred ccccccceeEEEecCCCEE-EEEcCCCcEEEEEc--CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 887 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 887 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
..+......++|+||++.| ++.+.++.|.+|++ .++.............. ......++++++|++.++. ..+.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTTE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCCE
Confidence 3344456789999999876 45566788999997 44443222222222111 1245789999999877775 5678
Q ss_pred EEEEEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeC
Q 001311 963 LAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1003 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~ 1003 (1102)
|..||..+++.+..+.. +...+++++|. ||++.|+.++.
T Consensus 222 v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 99999999998887763 35689999998 88887766554
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=2.2e-09 Score=116.22 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=154.1
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
..-..+..|+|++..|+++...++.|..||..+++.... .+...+.+++++++|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEE
Confidence 345678999998877888888899999999988765321 12357999999999996555
Q ss_pred EECCCeEEEEEccCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecC---------CCcEEEEeCCC-CeeeEEe
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATN-GAKQYIF 493 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~---------d~~i~vWd~~~-~~~~~~~ 493 (1102)
. ++.|.+||.++++.. .+..... ....+..++++++|+ ++++... .....||.+.. ++... +
T Consensus 71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 567999999887643 2222111 124588999999998 4454321 12344555443 44333 3
Q ss_pred ecCCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 494 EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
..+....+.++|+ ++++.| ++.+.++.|.+|+++. ....... .+... + .........++++
T Consensus 145 ~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~------~-~~~~~~p~g~~~d 207 (297)
T 3g4e_A 145 FDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK------L-EKEEQIPDGMCID 207 (297)
T ss_dssp EEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE------C-CGGGCEEEEEEEB
T ss_pred eeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE------C-CCCCCCCCeeEEC
Confidence 3344456778875 555555 5666689999998752 1111100 00000 0 0011244567778
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001311 572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 627 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 627 (1102)
++|++.++....+.|.+||..+++.+..+.... ..+++++|. |+++.|++++..
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 888777777788899999999899888887553 358899998 888888777653
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=4.3e-09 Score=127.00 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=136.4
Q ss_pred eEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311 851 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 902 (1102)
Q Consensus 851 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 902 (1102)
..++++| ++.+|++++.++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 4678999 777888887664 499999999998876643 31 112223334477
Q ss_pred ---CEEEEEcCCCcEEEEEcCCCcccceeeeecC--------CCC------------C----C---CCCCCcEEEEccCC
Q 001311 903 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ 952 (1102)
Q Consensus 903 ---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~v~~~~~spdg 952 (1102)
+.|+.++.+|.|.++|..+++.......... .+. . + ....-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 6899999999999999999886432211100 000 0 0 00011367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEEcCCceEeeeeccCCCCCCeeE
Q 001311 953 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 988 (1102)
Q Consensus 953 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 988 (1102)
.++++. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 6799999999998777653 334555
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEec-----------
Q 001311 989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS----------- 1056 (1102)
Q Consensus 989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~~----------- 1056 (1102)
..++.++.++++++.||.+++||..+|+.+.++. .+.+ +...-+.|.. +|+ ++++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~ 551 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA 551 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence 6677788899999999999999999999999887 3333 2222456655 455 4444333
Q ss_pred -----CCcEEEEeccC
Q 001311 1057 -----DGGVHVFEPLE 1067 (1102)
Q Consensus 1057 -----Dg~v~vW~~~~ 1067 (1102)
.+.+.+|.+..
T Consensus 552 ~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 552 TERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSCCCCCEEEEEEETC
T ss_pred cccCCCCeEEEEeccc
Confidence 36788888864
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=1.9e-10 Score=126.36 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=134.4
Q ss_pred CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc-----------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
..+..+++++...++++|+...+.+|++++.. ..... .+.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999996688889976433 11222 3556 999999 57888888 88999999
Q ss_pred EeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 876 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 876 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
|+.+.........|...+.++.+.+. .+++++.||.|.+||++.+.... .. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eE
Confidence 99876655666677888888877654 38889999999999999765321 11 378999999999 44
Q ss_pred EEEeCCeEEEEEcCCceE--eeeecc----C---CCCCCeeEEEEcCCCcEEEE
Q 001311 956 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus 956 ~~~~d~~i~iwd~~~~~~--~~~~~~----~---~h~~~v~~l~~spd~~~l~s 1000 (1102)
+...||.+++|+..+++. .+.+.. . +|...|.+++|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446899999999988886 455521 1 46889999999999999886
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.21 E-value=6.6e-10 Score=135.67 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=155.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEec----CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~----d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 420 (1102)
|...+..++|||||++|+.+.+. ..+|+|||+.+++.+... +.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP------------------LKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE------------------EEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc------------------cCC--ceeccEEEe-CC
Confidence 45678899999999985554433 357999999999865420 110 013567899 99
Q ss_pred CeEEEEECCC-------------eEEEEEccCCcee-eeEEEeec-cccCEEEEEEcCCCCeeEEEEec---CCCcEEEE
Q 001311 421 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 482 (1102)
Q Consensus 421 ~~las~~~d~-------------~v~vwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vW 482 (1102)
+.|+.++.+. .|++|++.++..- ..+..... |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 3999999876532 12222333 45567899999999963 33333 23589999
Q ss_pred eCCCCe-eeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCcee
Q 001311 483 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 556 (1102)
Q Consensus 483 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 556 (1102)
|+.++. ....+..+....... +++.+ +.+++....+ +.|..||+.+... ...+..+...+
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~------------ 330 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV------------ 330 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC------------
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE------------
Confidence 998764 456666666666554 33333 2444555443 6788899887543 12222222211
Q ss_pred eeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC----Cc
Q 001311 557 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG 629 (1102)
Q Consensus 557 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 629 (1102)
+ .++++++.|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..|+....+ ++
T Consensus 331 --------~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 331 --------L---TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp --------E---EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred --------E---EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 1 45555566666553 43 6899998754 445554322 2245566778888877766555 78
Q ss_pred EEEEEccCC
Q 001311 630 IKILATSDG 638 (1102)
Q Consensus 630 i~iwd~~~~ 638 (1102)
+..||+.++
T Consensus 398 l~~~d~~~g 406 (693)
T 3iuj_A 398 LYRFEPKSG 406 (693)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 999998776
No 223
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.19 E-value=3.2e-05 Score=91.68 Aligned_cols=526 Identities=10% Similarity=0.034 Sum_probs=276.7
Q ss_pred eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEcc
Q 001311 360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH 438 (1102)
Q Consensus 360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~ 438 (1102)
+|+.+ ..+.|+.-++.+...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34554 347899999876543221 111223468899999976666554 457889999987
Q ss_pred CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-
Q 001311 439 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST- 517 (1102)
Q Consensus 439 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~- 517 (1102)
+.... .. +.........|++.+.+.. +.++-...+.|.+.++........+........++++.+. +|.+.++-
T Consensus 68 g~~~~-~v--~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALE-HV--VEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCE-EE--ECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcE-EE--EeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 65422 11 2222245778999877765 4566667788999997654332223334445677877532 33343433
Q ss_pred eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcce
Q 001311 518 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQL 596 (1102)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 596 (1102)
+..+.|...+++........ .... ....++++++++.|+.+. ..+.|..+|+.....
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~---------------------~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVG---------------------RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCS---------------------SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCC---------------------CcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 22456766666543322111 1122 334455665555565554 567888999865443
Q ss_pred EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhc
Q 001311 597 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 676 (1102)
Q Consensus 597 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1102)
..+... .....++++.. +....+-...+.|...|..++. ....+.......
T Consensus 201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~-~~~~l~~~~~~p------------------------ 251 (628)
T 4a0p_A 201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ-NRTIIQGHLDYV------------------------ 251 (628)
T ss_dssp -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC-SCEEEECSCCSC------------------------
T ss_pred -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC-ceEEEecCCCCc------------------------
Confidence 233221 12345677754 3344444446788888876663 222222110000
Q ss_pred cccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEc-cCCceEE
Q 001311 677 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAIL 755 (1102)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~ 755 (1102)
..|.++.-........|.. ..+....+++. |.+.+-
T Consensus 252 -----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~~~- 288 (628)
T 4a0p_A 252 -----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGGFV- 288 (628)
T ss_dssp -----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTEEE-
T ss_pred -----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCCee-
Confidence 0011111100000001110 00111112221 223221
Q ss_pred EeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcC
Q 001311 756 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM 835 (1102)
Q Consensus 756 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~ 835 (1102)
+.+..|... .....+|. +...+|+.+....|+-..+.
T Consensus 289 C~C~~g~~l----------------------------------------~~d~~~C~---~~~~~Ll~s~~~~i~~i~l~ 325 (628)
T 4a0p_A 289 CGCPAHYSL----------------------------------------NADNRTCS---APTTFLLFSQKSAINRMVID 325 (628)
T ss_dssp EECSTTCEE----------------------------------------CTTSSCEE---CCSSEEEEEETTEEEEECCC
T ss_pred EEcCCCcEe----------------------------------------cccCCcCc---cccceeeeeccceEEEEecc
Confidence 122222110 11112232 12456666666777766665
Q ss_pred CCcee-eeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc------ccccceeEEEecCCCEE-E
Q 001311 836 TFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-V 906 (1102)
Q Consensus 836 ~~~~~-~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~ 906 (1102)
..... ..+.. .-..+.+++|.+.+++++.+=...+.|+.+++........+.. ....+.+|++...++.| +
T Consensus 326 ~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp TTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred cccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 33211 12221 2345889999994455555444567888887654332222222 23457889998876655 5
Q ss_pred EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEE-EeCC--eEEEEEcCCceEeeeeccCCC
Q 001311 907 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRES 982 (1102)
Q Consensus 907 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~h 982 (1102)
+-+..+.|.+.++++. ... .+.. ... .....+++.| .|.++.+ .... .|...+++.... ..+.. ..
T Consensus 406 td~~~~~I~v~~~~G~-~~~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~ 475 (628)
T 4a0p_A 406 TCEATNVINVTRLDGR-SVG-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SG 475 (628)
T ss_dssp EETTTTEEEEEETTSC-EEE-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SS
T ss_pred EcCCCCEEEEEECCCC-eEE-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-cc
Confidence 6667788999998753 211 1111 111 2468999999 5665555 2333 566666654332 22221 22
Q ss_pred CCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311 983 SAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
-...+.|+++++++.|+.+. ..+.|...+++.. ....+.. + ....|.+++... +.++.+-...+.|.
T Consensus 476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i~ 543 (628)
T 4a0p_A 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMIE 543 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeEE
Confidence 45679999999877776665 4588999998544 3333321 0 112355777654 56666666677888
Q ss_pred EEeccCCC
Q 001311 1062 VFEPLESE 1069 (1102)
Q Consensus 1062 vW~~~~~~ 1069 (1102)
..|..+++
T Consensus 544 ~~~k~~G~ 551 (628)
T 4a0p_A 544 KIDMTGRE 551 (628)
T ss_dssp EEETTSSS
T ss_pred EEECcCCC
Confidence 88877666
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.19 E-value=1.1e-08 Score=112.26 Aligned_cols=232 Identities=12% Similarity=0.009 Sum_probs=148.3
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 427 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 427 (1102)
-..+.+|+|+++.+++++..++.|.+||..+++.... .+...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------ECCCcceEEEEeCCCeEEEEE-
Confidence 3578899999887888888899999999988764321 113579999999999988765
Q ss_pred CCCeEEEEEccCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCeeeEEeecCCCC
Q 001311 428 SRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 499 (1102)
Q Consensus 428 ~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~vWd~~~~~~~~~~~~h~~~ 499 (1102)
.+ .|.+||..+++... +..... ....+.+++++++|+ ++++... .+.|..+| +++... +..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence 44 49999998876432 211111 124689999999998 4444432 24455555 555433 3233345
Q ss_pred eEEEeeeecCCccEE-EEEeCCCeEEEEEcC--CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 500 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 500 v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
...++|+ ++++.+ ++.+.++.|.+||++ ++-... ...+. ..+.. .......++++++|++
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~~~~-~~~~~---------~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEVF-IDSTG---------IKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEEE-EECTT---------SSSEEEEEEECTTSCE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCccc-----CceEE-EECCC---------CCCCCCeeEECCCCCE
Confidence 6778874 555655 444567899999986 320110 00000 00000 0123345677777777
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCC
Q 001311 577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDN 628 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg 628 (1102)
.++...++.|.+||. +++.+..+.... ..+.+++|+ +++..|++++..+
T Consensus 244 wva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 244 WNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecCC
Confidence 777667789999998 677777766443 258899998 8888777665543
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=8e-09 Score=124.65 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=59.3
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEE
Q 001311 827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 905 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l 905 (1102)
|.|..||+.+++.+..+.. ...+....+.. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998877753 33344555666 67788889999999999999999998886433 333457777888755
Q ss_pred EE
Q 001311 906 VS 907 (1102)
Q Consensus 906 ~s 907 (1102)
+.
T Consensus 535 v~ 536 (677)
T 1kb0_A 535 VS 536 (677)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.17 E-value=1.1e-09 Score=121.39 Aligned_cols=251 Identities=12% Similarity=0.068 Sum_probs=147.3
Q ss_pred CCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
..+..|+++|+|+. +++.. .++.+.||.+.+++.. .|..|. ....+|-..+..++|+++|++++
T Consensus 17 ~~p~~va~~~~g~~-~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGRL-FLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSCE-EEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCCE-EEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 67899999999984 66643 2343666666555432 122111 01235667899999999998777
Q ss_pred EEEC-----CCeEEEEEccCCceeeeEEEee----ccccCEEEEEEcCCCCeeEEEEec---CCCcEEEEeCCCCeeeEE
Q 001311 425 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 492 (1102)
Q Consensus 425 s~~~-----d~~v~vwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vWd~~~~~~~~~ 492 (1102)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998755432 221 12345789999987654 456655 678999999999988777
Q ss_pred eecCCC-----------------------------CeEEEeeeecCCccEEEEEeCCC-eEEEEEcCC--CCCeeeecCC
Q 001311 493 FEGHEA-----------------------------PVYSVCPHHKENIQFIFSTALDG-KIKAWLYDN--LGSRVDYEAP 540 (1102)
Q Consensus 493 ~~~h~~-----------------------------~v~~v~~~~~~~~~~l~s~s~dg-~i~~wd~~~--~~~~~~~~~~ 540 (1102)
+.+|.. .+..++| +++++.|+.+..++ .|..++... ......-..
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~--s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~- 237 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL--DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL- 237 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE--CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH-
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe--ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh-
Confidence 755421 1234444 23344444444333 222222110 000000000
Q ss_pred CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311 541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 620 (1102)
Q Consensus 541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 620 (1102)
...+. ..+. ......++++++|+.+++...++.|.+||..+++...... ........+++|.+++.+
T Consensus 238 ~~~~~-----------~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 238 GSKIE-----------RYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HTTCE-----------EEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCE
T ss_pred hcceE-----------eccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCcE
Confidence 00000 0000 1123347888888888888889999999985666433332 212335678999998887
Q ss_pred EEEEECCCc
Q 001311 621 LAVSTNDNG 629 (1102)
Q Consensus 621 l~~~~~dg~ 629 (1102)
+++....+.
T Consensus 305 ~v~~~~~~~ 313 (343)
T 2qe8_A 305 YFDCNQLHH 313 (343)
T ss_dssp EEEECCGGG
T ss_pred EEEeCcccc
Confidence 777654433
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.17 E-value=2.9e-08 Score=111.63 Aligned_cols=158 Identities=8% Similarity=0.042 Sum_probs=100.3
Q ss_pred CCCeEEEEECCCeEEEEEccCCceeeeEEEeecc-------ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311 419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 491 (1102)
Q Consensus 419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~ 491 (1102)
++..|.+++.++.|..+|.++|+.+-.. .+... ...+.+.... ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 4778888888999999999999866432 12111 2233332222 334 47777889999999999999987
Q ss_pred EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311 492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~ 571 (1102)
.............. . + ..++.++.++.|..+|..+++............ . .... ....+.
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~-------------~~~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGE-------------SAPTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCC-------------CCCEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCC-------------CCcEEE
Confidence 77644322221121 1 2 478888899999999999887776654432110 0 0000 000111
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311 572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
+..++.+..++.|..+|..+++.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 24577788899999999999998877653
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=1.1e-08 Score=112.28 Aligned_cols=225 Identities=12% Similarity=-0.016 Sum_probs=145.0
Q ss_pred eEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311 742 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820 (1102)
Q Consensus 742 i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~ 820 (1102)
.....|+|++..+ ++...++.|..|+.. ++...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEE-----CCCcceEEEEeCCCeE
Confidence 4567899975544 444456888887753 22211111 2346899999999988
Q ss_pred EEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEeC------CCcEEEEEeecceeeeeecccc
Q 001311 821 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 890 (1102)
Q Consensus 821 las~sdg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~ 890 (1102)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999988775433221 123588999999 7887665432 24555555 55543 333334
Q ss_pred ccceeEEEecCCCEEEE-EcCCCcEEEEEcC--CC-cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEE
Q 001311 891 KRITGLAFSHALNVLVS-SGADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 965 (1102)
Q Consensus 891 ~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~i 965 (1102)
.....++|++|++.|+. .+.++.|.+|++. ++ +............. ......++++++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 45678999999987654 4567889999986 54 32221222212111 1245789999999877775 5689999
Q ss_pred EEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCC
Q 001311 966 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1004 (1102)
Q Consensus 966 wd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~D 1004 (1102)
||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666655 335679999998 898877655543
No 229
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.17 E-value=2.4e-05 Score=92.71 Aligned_cols=503 Identities=10% Similarity=0.051 Sum_probs=255.0
Q ss_pred CCCeEEEEEccCCCeEEEEE-CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311 408 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~-~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~ 486 (1102)
-..+..++|++.+..|..+. ..+.|..+++++...... .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence 44678999999777776654 467898999876532111 12223356889999987665 566667788999999765
Q ss_pred CeeeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565 (1102)
Q Consensus 487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i 565 (1102)
......+.........|++.+. +|.++++-- ..+.|...+++............. ..
T Consensus 116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~---------------------~P 173 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---------------------WP 173 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS---------------------SE
T ss_pred CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC---------------------CC
Confidence 4333333234444566776432 233334431 234555555543222221111122 23
Q ss_pred eEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311 566 GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 644 (1102)
Q Consensus 566 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 644 (1102)
..+++++++..|+.+. ..+.|...|++........... .....++++..+ ....+-...+.|...|..++.. ...
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~ 249 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LRE 249 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEE
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEE
Confidence 4455555544555544 5677888888654333222211 123456787655 3444444567888888777632 222
Q ss_pred cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC-
Q 001311 645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS- 723 (1102)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~- 723 (1102)
+..... .+. .|.++.-....
T Consensus 250 i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp~ 270 (619)
T 3s94_A 250 IHSDIF-------------SPM----------------------------------------------DIHAFSQQRQPN 270 (619)
T ss_dssp CCSCCC-------------CCS----------------------------------------------EEEECCGGGSCC
T ss_pred EecCCC-------------CCc----------------------------------------------EEEEEccccCCC
Confidence 211100 000 01111100000
Q ss_pred CCCccccccCCCcccccceEEEEE-ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311 724 EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802 (1102)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 802 (1102)
....|.. ..+....+++ +|.....-+.+.+|...
T Consensus 271 ~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~~l-------------------------------------- 305 (619)
T 3s94_A 271 ATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGVKL-------------------------------------- 305 (619)
T ss_dssp CCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTCCB--------------------------------------
T ss_pred ccccccC-------CCCcccceEECCCCCCCceEeCCchhee--------------------------------------
Confidence 0000000 0001111111 12111111112221100
Q ss_pred CCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee-eec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 803 ~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
.....+|. .....+|+.+..+.|+..++....... .+. ..-..+.+++|++.+++++++-...+.|+.+++...
T Consensus 306 --~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~ 381 (619)
T 3s94_A 306 --LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381 (619)
T ss_dssp --CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence 00001111 112346666667788888887654321 121 123458899999845555555556788999887654
Q ss_pred eeeeeeccccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001311 881 EVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 958 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~- 958 (1102)
.....+........+|++...+. +.++-+..+.|.+.++++... ..+. ... ......+++.|...+|..+
T Consensus 382 ~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~---~~~---l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 382 GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILI---SED---LEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE---CTT---CCSEEEEEEETTTTEEEEEE
T ss_pred ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEE---ECC---CCCeeeEEEEcCCCcEEEec
Confidence 33233333335677899986544 555656678899999886432 1111 111 1256899999974444443
Q ss_pred --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311 959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus 959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
....|...+++..... .+. ...-.....|++++++..|+.+. ..+.|..++++.......+... +
T Consensus 454 ~g~~~~I~r~~~dG~~~~-~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l-------- 521 (619)
T 3s94_A 454 WGEIPKIERAALDGSDRV-VLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I-------- 521 (619)
T ss_dssp CSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--C--------
T ss_pred CCCCCEEEEEccCCCccE-EEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--C--------
Confidence 2356776666543322 222 12345788999998777666554 4578999998654332222100 1
Q ss_pred ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
..|.+++... +.+.++-...+.|..-+..++.
T Consensus 522 ~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 522 PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence 1233566553 3555555556778777777764
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=6.5e-09 Score=125.74 Aligned_cols=191 Identities=15% Similarity=0.132 Sum_probs=126.3
Q ss_pred eEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311 851 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 902 (1102)
Q Consensus 851 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 902 (1102)
..++++| +..++++++.++. |..||..+|+.+..++. |. ..+.-.....+|
T Consensus 238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 3678999 7788888888764 99999999998877653 22 111112222366
Q ss_pred C---EEEEEcCCCcEEEEEcCCCcccceeeeec------------------------CCCCC-------CCCCCCcEEEE
Q 001311 903 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGRT-------PTAQSDTRVQF 948 (1102)
Q Consensus 903 ~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------------------------~~~~~-------~~~~~v~~~~~ 948 (1102)
+ .|+.++.+|.++++|..+++......... ..+.. .....-..++|
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 5 78899999999999999988642111100 00000 00001134789
Q ss_pred ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceEeeeeccCCC
Q 001311 949 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES 982 (1102)
Q Consensus 949 spdg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h 982 (1102)
+|+..++++. . ++.|..||+.+++.+-.+..+
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-- 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-- 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--
Confidence 9988877763 1 367999999999988776532
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe
Q 001311 983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1055 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~ 1055 (1102)
.++..-.++..+.++++++.||.|++||..+|+.+.+++ ++.+ +...-+.|.. ||+ ++++.+
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 233334566688899999999999999999999998887 4433 2222466666 455 455443
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=4.8e-09 Score=128.08 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=157.6
Q ss_pred cccceEEEEEccCCceEEEeec-----CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311 738 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 812 (1102)
Q Consensus 738 ~~~~i~~~~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l 812 (1102)
+...+..++|||||++++.+.. +..|++||+ .+|+.+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence 4457888999999998885432 245666665 4444322111 11113567
Q ss_pred EEecCCCeEEEEe-CC-------------eEEEEEcCCCce----eeeecC-CCCCeeEEEEecCCCcEEEEEeC----C
Q 001311 813 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D 869 (1102)
Q Consensus 813 ~~s~d~~~las~s-dg-------------~I~iwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~lasg~~----d 869 (1102)
+|+ |++.|+.++ +. .|++|++.+... +..... |......+.|+| |+++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987653 222333 445578899999 8887765443 2
Q ss_pred CcEEEEEeecce-eeeeeccccccceeEEEecCCCEEEE-EcCC---CcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311 870 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 944 (1102)
Q Consensus 870 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1102)
..|+++|+.++. ....+..+....... |+++|..|+. ...| +.|.+|++.+++......+.. +. ..+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~---~~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ER---QQVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CC---SSCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CC---CCEE
Confidence 489999987753 455666666666655 6667666554 4333 579999998865433232221 11 1233
Q ss_pred EEEEccCCcEEEEE--eCC--eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC----CeEEEEEcCCce
Q 001311 945 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1016 (1102)
Q Consensus 945 ~~~~spdg~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D----g~I~vwd~~~~~ 1016 (1102)
.|++++++|+.. .++ .|++|++.++.. ..+.. .+.+.+..+.+++|++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 899999998874 454 688999886543 33332 234567788889998877666555 889999998886
Q ss_pred eE
Q 001311 1017 LR 1018 (1102)
Q Consensus 1017 ~~ 1018 (1102)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=6.7e-10 Score=122.02 Aligned_cols=177 Identities=11% Similarity=0.030 Sum_probs=131.5
Q ss_pred CeEEEEEccCCCeEEEEECCCeEEEEEccCCce--------eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |+.|+| |++ +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 699999999999999999986 55699765430 1111 1224666 999999 888 67777 8899999
Q ss_pred EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311 482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 561 (1102)
Q Consensus 482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 561 (1102)
||+.+.........|...+.++.+. .. .+++++.||.|.+||+.+..... .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~--~p--~~av~~~dG~L~v~dl~~~~~~~----~--------------------- 161 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNV--NN--TLVILNSVNDLSALDLRTKSTKQ----L--------------------- 161 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEEC--SS--EEEEEETTSEEEEEETTTCCEEE----E---------------------
T ss_pred EEchhhhccCccceeecceeeEEec--CC--CEEEEECCCCEEEEEccCCcccc----c---------------------
Confidence 9999877766777788888887653 22 28888999999999998654321 0
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcC-------CCCCCCcCeEEEcCCCCEEEEEE
Q 001311 562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA-------DGGLPASPRIRFNKDGCLLAVST 625 (1102)
Q Consensus 562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~ 625 (1102)
...+.+++|+|+| ++.|..||.+++|+...+.. ...+.. ..+...|.++.|.+++.++++-.
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 1256677777777 67889999999999987775 555621 12345799999999999888644
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=1e-08 Score=123.95 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCCEE
Q 001311 827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 905 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l 905 (1102)
|.|..||+.+++.+..+..+.. +..-.+.. .+.++++|+.||.|+.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999998887764433 33335555 6778999999999999999999999888654333 3457788888754
Q ss_pred E
Q 001311 906 V 906 (1102)
Q Consensus 906 ~ 906 (1102)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 4
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=6.2e-09 Score=113.14 Aligned_cols=228 Identities=11% Similarity=0.030 Sum_probs=150.0
Q ss_pred cceEEEEEccCCce-EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311 740 TKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~ 818 (1102)
.......|+++|+. +++...++.|..|+.. +..... .. +...+..++++++|
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~~--~~--~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDVL--LD--ATAFTNGNAVDAQQ 97 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEEE--EE--SCSCEEEEEECTTS
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEEE--eC--CCCccceeeECCCC
Confidence 45568899999984 4555557888888641 111100 00 34568899999999
Q ss_pred CeEEEEe-CCeEEEEEcCCCceeeeec---CC-CCCeeEEEEecCCCcEEEE----EeC-------------CCcEEEEE
Q 001311 819 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN 876 (1102)
Q Consensus 819 ~~las~s-dg~I~iwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd 876 (1102)
+++++.. ++.|.+|+.. ++...... +. ...+..+++++ +|+++++ |.. .+.|+.||
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9776665 5789999986 44322211 11 23477899999 8888876 332 25677777
Q ss_pred eecceeeeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
..+++..... .......++|+||++.|+.+... +.|.+|++..+............ ......+++++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~ 248 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR 248 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence 7666654333 44456789999999988777655 68999998765421112221111 12457899999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311 951 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus 951 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
+|++.++. .+.|.+|+. +++.+..+... ..+.+++|++|++.|+.++.++..+
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99955544 456999998 46666665532 2589999999999888887765433
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=2.2e-08 Score=113.80 Aligned_cols=244 Identities=12% Similarity=0.093 Sum_probs=167.0
Q ss_pred EEEec-----CCCeEEEEe--CCeEEEEEcCCCceeeeecCC-CCCeeEEEE-e-cCCCcEEEEEe--------------
Q 001311 812 FALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM-------------- 867 (1102)
Q Consensus 812 l~~s~-----d~~~las~s--dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~-------------- 867 (1102)
..+|. ||+++.+.. ++.|.+.|+.+.++.+.+.-. ...+..+++ + | +++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55555 999998877 577999999999988854322 345888888 4 8 788888774
Q ss_pred ----CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC-------------------------------
Q 001311 868 ----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------- 912 (1102)
Q Consensus 868 ----~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------------- 912 (1102)
.++.+.+.|..+.+...++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34589999999988887775322 346788999999999888553
Q ss_pred -------cEEEEEcCCCcccc-eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----------
Q 001311 913 -------QLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---------- 972 (1102)
Q Consensus 913 -------~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~---------- 972 (1102)
.|.|.|..+.+... ...+.. + ....++.++|||++++++ .+.+|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35566655521000 111111 1 245789999999999985 67899999999763
Q ss_pred --EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC----------ceeEEEeCCCcccCCCCCCCcccceE
Q 001311 973 --CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus 973 --~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
.+..... ......++|++||...++.-.|+.|.+||+++ ...+.++... +.| ||. -..++
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g 392 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMG 392 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTT
T ss_pred cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccc
Confidence 3333332 45789999999995455666899999999988 5667777632 222 110 11234
Q ss_pred EEecCCCCCEEEEEec---CCc----------EEEEeccCCCcccc
Q 001311 1041 IAAHPQEPNEFALGLS---DGG----------VHVFEPLESEGKWG 1073 (1102)
Q Consensus 1041 v~f~p~d~~~l~s~~~---Dg~----------v~vW~~~~~~~~~~ 1073 (1102)
+.++| ||++|++... |+- -.++|++.++.++.
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 56778 6888887654 332 28899977664333
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=7.4e-08 Score=108.26 Aligned_cols=233 Identities=9% Similarity=0.066 Sum_probs=140.1
Q ss_pred EEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc
Q 001311 362 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 441 (1102)
Q Consensus 362 lasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~ 441 (1102)
+++++.++.|..+|..+|+.+........ . . ........+. .....++..+.+++.++.|..+|.++|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-------~-~--~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEK-------D-G--WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccc-------c-c--cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 77778889999999999988754322100 0 0 0000012222 2222356788889999999999999998
Q ss_pred eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe-----EEEeeeecCCccEEEE
Q 001311 442 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS 516 (1102)
Q Consensus 442 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~~~l~s 516 (1102)
.+-.. ............ .++ .++.++.++.|..+|..+|+.+..+....... ..... . +..++.
T Consensus 125 ~~W~~---~~~~~~~~~p~~-~~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~--~~~v~~ 193 (376)
T 3q7m_A 125 VAWQT---KVAGEALSRPVV-SDG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A--FGAAVV 193 (376)
T ss_dssp EEEEE---ECSSCCCSCCEE-ETT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E--TTEEEE
T ss_pred EEEEE---eCCCceEcCCEE-ECC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E--CCEEEE
Confidence 65432 212111111122 234 47778889999999999999988776432211 11111 1 246888
Q ss_pred EeCCCeEEEEEcCCCCCeeeecCCCCe----eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311 517 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 592 (1102)
Q Consensus 517 ~s~dg~i~~wd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 592 (1102)
++.++.|..+|..+++........... +..+. ..... + .+ .+..++.++.++.+..+|..
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence 888999999999988776655432110 00000 00000 0 00 13457778889999999999
Q ss_pred CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+++.+...... ....+.. ++..+++++.++.|..+|..++
T Consensus 258 tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp TCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 99888776532 2223333 4667777888888888887776
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=5.6e-08 Score=106.47 Aligned_cols=230 Identities=11% Similarity=0.133 Sum_probs=148.5
Q ss_pred cCCCeEEEEe--CCeEEEEEcCCC----ceeeeecC-------CCCCeeEEEEecCCCcEEEEEeCC------CcEEEEE
Q 001311 816 KNDSYVMSAS--GGKISLFNMMTF----KTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN 876 (1102)
Q Consensus 816 ~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd 876 (1102)
.++++|++.+ ++.|.++|+.+. +..+++.. .......+..+| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 7888888877 688999999754 45555520 112355678889 77 66666555 7899999
Q ss_pred eecceeeeeeccccc---cceeEEEecCCCEEEEEc-------------------CCCcEEEEEcCCCcccceeeeecCC
Q 001311 877 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT 934 (1102)
Q Consensus 877 ~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~vwd~~~~~~~~~~~~~~~~ 934 (1102)
..+++.+.++..-.. --..+.|+|+++.+++.. .+.+|.+||+.+++... .+..-.
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999988863222 234588899999999885 36789999999864322 222210
Q ss_pred CCCCCCCCCcEEEE--ccCCcEEEEE-------eCCeEEEEEcCCceEeee--e--cc---CC-----------CCCCee
Q 001311 935 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECVKQ--W--VP---RE-----------SSAPIT 987 (1102)
Q Consensus 935 ~~~~~~~~v~~~~~--spdg~~l~~~-------~d~~i~iwd~~~~~~~~~--~--~~---~~-----------h~~~v~ 987 (1102)
. ......+.| +|+|+++.++ .+++|.+|..+.++.... + .. .+ -...+.
T Consensus 249 ~----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 E----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp T----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred C----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 0 012345555 9999998874 345787766554432111 1 00 00 024578
Q ss_pred EEEEcCCCcEEEEEeC-CCeEEEEEcC---CceeEEEeCCCccc-----CCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311 988 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 988 ~l~~spd~~~l~s~s~-Dg~I~vwd~~---~~~~~~~~~~~~~~-----~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
.+.+|+||++|.++.. .+.|.+||+. +.+++.++...... +.|. .....|-.+.++| ||++|.++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 8999999999987765 6899999986 34666666532110 0010 0001355799999 678888777
No 238
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.07 E-value=8.1e-09 Score=113.29 Aligned_cols=252 Identities=11% Similarity=-0.018 Sum_probs=154.2
Q ss_pred CeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE-------
Q 001311 359 QTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------- 427 (1102)
Q Consensus 359 ~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------- 427 (1102)
.+++++...++ +|.+.|..+++.+... -.+. .+ .++|||||++|.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAF-LS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCC-CC--ceEECCCCCEEEEEcccccccc
Confidence 44566666555 8889999999998752 2232 24 799999999999986
Q ss_pred ---CCCeEEEEEccCCceeeeEEEeec-c----ccCEEEEEEcCCCCeeEEEEec--CCCcEEE--EeCCCCeeeEEeec
Q 001311 428 ---SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCG--DDKTIKV--WDATNGAKQYIFEG 495 (1102)
Q Consensus 428 ---~d~~v~vwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~d~~~~~l~s~~--~d~~i~v--Wd~~~~~~~~~~~~ 495 (1102)
.++.|.+||..+++.+..+. +.+ . ......++|+|||+. ++.+. .+..|.+ +|+.+ +.++.-
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999998776532 210 0 123567999999995 44433 3567888 99877 444431
Q ss_pred CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC----CCCee-----eecCCC----------------CeeeEEEEc
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPG----------------RWCTTMAYS 550 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~----------------~~v~~~~~s 550 (1102)
- +. +.+.+... ..+++.+.||.+.+.|+.+ ..... .+.... +.+..+...
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~ 239 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECC
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECC
Confidence 1 11 11223332 3445666677777777765 11111 000000 111111111
Q ss_pred cCCceeee------------ccccCceeEEEEcCCCCEEEEEeC---------CCeEEEEECCCcceEEEEcCCCCCCCc
Q 001311 551 ADGTRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPAS 609 (1102)
Q Consensus 551 ~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v 609 (1102)
.....+.. +........+.+++++++++.+.. ++.+.++|+.+++.+..+.... ..
T Consensus 240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p 316 (368)
T 1mda_H 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DS 316 (368)
T ss_dssp SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EE
T ss_pred CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---Cc
Confidence 10000000 000111122679999988887543 2356699999999888876543 37
Q ss_pred CeEEEcCCCC-EEEEEE-CCCcEEEEEccCCccceeecc
Q 001311 610 PRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 646 (1102)
Q Consensus 610 ~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 646 (1102)
.+++|+|||+ .+++.. .++.|.++|+.++ +.+..+.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 8899999998 455555 5899999999998 5655554
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=7.8e-09 Score=113.93 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=109.5
Q ss_pred EEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe
Q 001311 414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 493 (1102)
Q Consensus 414 l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~ 493 (1102)
..+..+| .|..++.++.|..|| .+++.+.. ...+...+.++...+++. +..++.+ |..+|. +|+.+..+
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence 3344455 455667788899999 77775432 333445567788877776 5555554 888995 77665544
Q ss_pred ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311 494 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573 (1102)
Q Consensus 494 ~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~ 573 (1102)
...........+. + ..++.++.++.|..+|.. +............+.++... ++
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~---------------------~~ 147 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS---------------------ED 147 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TT
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc---------------------CC
Confidence 4333222223332 2 467888888999999887 55544444333333333333 33
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
+. +..++.++.|..||.. ++.+..+.... ..+.++.+.+++..++.. +.|..+| .++
T Consensus 148 g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g 204 (330)
T 3hxj_A 148 GT-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN-PDG 204 (330)
T ss_dssp SC-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred CE-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence 33 6677788999999998 77776665433 246677777777755443 6777777 444
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=3e-08 Score=108.61 Aligned_cols=193 Identities=11% Similarity=0.105 Sum_probs=133.5
Q ss_pred CeeEEEEecCCCeEEEEe-C------CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEe----------
Q 001311 808 AVPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM---------- 867 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-d------g~I~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~---------- 867 (1102)
....+.++|+| +++++. + |.|.++|.++++.+.++..... --..+-|+| +++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccc
Confidence 34567888999 555543 4 6899999999999988863322 234578899 888888774
Q ss_pred ---------CCCcEEEEEeecceeeeeeccc--cccceeEEE--ecCCCEEEEEc------CCCcEEEEEcCCCccccee
Q 001311 868 ---------DDSSIQIYNVRVDEVKSKLKGH--SKRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNR 928 (1102)
Q Consensus 868 ---------~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s------~Dg~i~vwd~~~~~~~~~~ 928 (1102)
.+.+|.+||+.+++.+.++..- ......|.| +|+++++.+++ .+++|.+|..+.++.....
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 3689999999998888777542 123345555 99999888776 4568888777654433333
Q ss_pred eeecCCCCC---C---------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC---CceEeeeeccCCC---------
Q 001311 929 FLQIPTGRT---P---------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES--------- 982 (1102)
Q Consensus 929 ~~~~~~~~~---~---------~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~---~~~~~~~~~~~~h--------- 982 (1102)
.+.+..... . .......+.+|+||++|.++ ..+.|.+||+. +.+.+..+...+.
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 322221100 0 01357899999999999996 57899999985 3456665554321
Q ss_pred ---CCCeeEEEEcCCCcEEEEEe
Q 001311 983 ---SAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 983 ---~~~v~~l~~spd~~~l~s~s 1002 (1102)
......+++||||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 11468899999999999988
No 241
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.05 E-value=8.6e-05 Score=87.98 Aligned_cols=505 Identities=7% Similarity=-0.074 Sum_probs=264.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
.-..+.+|+|++.+..|+.+-..++.|..+++....... ++..-......+++.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 445789999999888777787788999999987543322 1222224577899998666555
Q ss_pred EE-ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 425 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 425 s~-~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
.+ ...+.|.+.++++..... + +...-.....|++.|.... ++++- +..+.|...++.... ...+-........
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~G 170 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANG 170 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEE
T ss_pred EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcce
Confidence 44 556889999987654221 1 2233456789999986664 33443 345678888865443 3333334456677
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+++.+.. +.+.++-...+.|...|++.... ..+..... ....+++.. +..+++-..
T Consensus 171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~---------------------~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLP---------------------HPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCS---------------------CEEEEEEET-TEEEEEETT
T ss_pred EEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCC---------------------CceEEEEEC-CEEEEecCC
Confidence 8875322 23444445567888888865332 11111111 112333332 233344445
Q ss_pred CCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311 583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 661 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1102)
.+.|...|..+++....+..... ....+.. ++..+. + .+ .+.. ..+.-.. .
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~--------~n-----~C~~-~ng~C~~--------~- 278 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G--------WN-----ECAS-SNGHCSH--------L- 278 (628)
T ss_dssp TTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C--------CC-----TTTT-TGGGCSS--------E-
T ss_pred CCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c--------ce-----Eecc-CCCCcch--------h-
Confidence 77888888777766555542211 2223322 211110 0 00 0000 0000000 0
Q ss_pred CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311 662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 741 (1102)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1102)
++.. +.+.+... ..+|. .+.. ..
T Consensus 279 C~~~----------------------------------~~~~~~C~-C~~g~----~l~~------------------d~ 301 (628)
T 4a0p_A 279 CLAV----------------------------------PVGGFVCG-CPAHY----SLNA------------------DN 301 (628)
T ss_dssp EEEE----------------------------------TTTEEEEE-CSTTC----EECT------------------TS
T ss_pred hhcC----------------------------------CCCCeeEE-cCCCc----Eecc------------------cC
Confidence 0000 00000000 00010 0000 00
Q ss_pred eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311 742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 821 (1102)
Q Consensus 742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l 821 (1102)
.+|. .+ ...|+.+. ...|+-..+... ........+. .-..+.+++|++.+..|
T Consensus 302 ~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~--------------------~~~~~~l~~~---~~~~~~~ld~d~~~~~i 354 (628)
T 4a0p_A 302 RTCS--AP-TTFLLFSQ-KSAINRMVIDEQ--------------------QSPDIILPIH---SLRNVRAIDYDPLDKQL 354 (628)
T ss_dssp SCEE--CC-SSEEEEEE-TTEEEEECCCTT--------------------CCCCEECCCT---TCSCEEEEEEETTTTEE
T ss_pred CcCc--cc-cceeeeec-cceEEEEecccc--------------------cCceEEEEeh---hcCCceEEEEecCCCeE
Confidence 0010 01 12233222 223332222100 0000000011 22447889999987777
Q ss_pred EEEe--CCeEEEEEcCCCceeeeecC------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccccc
Q 001311 822 MSAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR 892 (1102)
Q Consensus 822 as~s--dg~I~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~ 892 (1102)
..+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+....+ ......
T Consensus 355 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~ 433 (628)
T 4a0p_A 355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDR 433 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCC
T ss_pred EEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCc
Confidence 7776 57899888765433333332 234688999998445566666677899999875 4444443 333456
Q ss_pred ceeEEEecC-CCEEEEEcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEE
Q 001311 893 ITGLAFSHA-LNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE 967 (1102)
Q Consensus 893 V~~l~~s~d-~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd 967 (1102)
..+|++.|. |.++++-.... .|...++++... ..+.. ... .....+++++++..|..+ ..+.|..++
T Consensus 434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~---~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~ 505 (628)
T 4a0p_A 434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFF---SGL---SKPIALALDSRLGKLFWADSDLRRIESSD 505 (628)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEe---ccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence 789999994 54444433222 566666665322 11111 111 245889999988777775 457899999
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
++... .+.+.. ........+++.. +.++++=...+.|...|..+|+....+
T Consensus 506 ~dG~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 506 LSGAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp TTSCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 86543 333321 2244577888754 455555556678888888877654444
No 242
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.05 E-value=3.7e-05 Score=91.07 Aligned_cols=198 Identities=7% Similarity=-0.016 Sum_probs=120.7
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
..+.+++|++.+..|..+. .+.|+.+++........+.........+++...++++.++-...+.|.+.++.... ..
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~ 427 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK 427 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence 3477899998766666665 68899999876444333443345678999997456666666667899999876443 33
Q ss_pred ee-ccccccceeEEEecCCCEEEEEcC--CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311 885 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 959 (1102)
Q Consensus 885 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~ 959 (1102)
.+ ...-....+|++.|...+|..+.. ...|...++++... .... .+.. .....+++++++..|..+ .
T Consensus 428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--VVLV---NTSL---GWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE---CSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--EEEE---eCCC---CCCeeeEEcccCCEEEEEECC
Confidence 33 223345688999997545544432 35677777765332 1111 1111 245789999987777765 4
Q ss_pred CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 960 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
.+.|..+++.......... ........|++..+ .++++-...+.|...|..+|.
T Consensus 500 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEESSSCCCEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEecCCCceEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 5688888886543322221 11233456666543 333444445677777877773
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.95 E-value=3.1e-08 Score=109.05 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=133.6
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430 (1102)
Q Consensus 351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 430 (1102)
+..+..+|. +..|+.++.|..|| .+++.+.. ...+...+.++...++|.+.+ ++.+
T Consensus 24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~- 79 (330)
T 3hxj_A 24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK- 79 (330)
T ss_dssp CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence 344556665 66777889999999 88876542 111233456777777776544 4444
Q ss_pred eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCC
Q 001311 431 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 510 (1102)
Q Consensus 431 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 510 (1102)
|..+|. +++.+.. +...........+. ++ .+..++.++.|..+|.. |+.+..+..+...+.++.. ..+
T Consensus 80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~ 147 (330)
T 3hxj_A 80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED 147 (330)
T ss_dssp -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence 888886 5543321 11122222333333 44 36777888999999988 8877777655555555543 334
Q ss_pred ccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001311 511 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD 590 (1102)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd 590 (1102)
+ .++.++.++.|..+|.. +.....+......+.++... +++. +..++ +.|..||
T Consensus 148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d---------------------~~g~-l~v~t--~~l~~~d 201 (330)
T 3hxj_A 148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG---------------------KDGT-IYFGS--DKVYAIN 201 (330)
T ss_dssp S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TTCC-EEEES--SSEEEEC
T ss_pred C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc---------------------CCCE-EEEEe--CEEEEEC
Confidence 4 46778888999999987 55554444333333333333 3333 44555 7899999
Q ss_pred CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311 591 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 634 (1102)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 634 (1102)
.+++......... ..+.++...++|. |.+++.++.|..++
T Consensus 202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 202 -PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp -TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred -CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 6777776665432 3577888888875 44466677777775
No 244
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.89 E-value=6.4e-10 Score=124.15 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=108.3
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311 859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 938 (1102)
Q Consensus 859 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 938 (1102)
++..|++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 466888999999999999999999888776 56666667778888888899999999999887643211110000
Q ss_pred CCCCC-cEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311 939 TAQSD-TRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus 939 ~~~~v-~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
.+ ....+..++ .+++ +.++.|+.||..+|+.+..+.. +. ...++|++..+++++.|+.|+.||..+|+
T Consensus 82 ---~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 82 ---LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---HHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ---ccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 00 011112344 4444 6789999999999998766542 22 24567788999999999999999999998
Q ss_pred eEEEeCCCcccCCCCCCCcccceEEEecCC--CCCEEEEEecCCcEEEEeccCCCcccccC
Q 001311 1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1075 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~--d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1075 (1102)
.+.++....+ . ...+.++ -...+++++.||.|+.||..+++..|...
T Consensus 152 ~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 8765541111 1 1122220 01567788999999999999999888764
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=8.2e-08 Score=109.10 Aligned_cols=237 Identities=6% Similarity=0.017 Sum_probs=153.4
Q ss_pred ccCCceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEE-e-cCCCeEEE
Q 001311 748 TNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL-S-KNDSYVMS 823 (1102)
Q Consensus 748 s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~-s-~d~~~las 823 (1102)
.+||+++.+...+ ..|.+.|+. +.+.... .+ .....+..+++ + |+++++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~----------------------t~~~~~ii~i---p~g~~phg~~~~~~p~~~~v~~ 152 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCD----------------------VMKCDAILEI---PNAKGIHGLRPQKWPRSNYVFC 152 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETT----------------------TTEEEEEEEC---SSCCSEEEEEECCSSBCSEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECC----------------------CceEeeEEeC---CCCCCCcceeeeecCCCcEEEE
Confidence 3488888876654 567776653 2221110 11 12345778887 5 89999888
Q ss_pred Ee-------------------CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--------------
Q 001311 824 AS-------------------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-------------- 870 (1102)
Q Consensus 824 ~s-------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-------------- 870 (1102)
++ ++.+.+.|..+.+...++.-.. ....++++| +++++++.+.+.
T Consensus 153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred ecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhcccccc
Confidence 83 3579999999988888776322 457788999 888888887553
Q ss_pred ------------------------cEEEEEeec--cee-eeeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCC
Q 001311 871 ------------------------SIQIYNVRV--DEV-KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW 922 (1102)
Q Consensus 871 ------------------------~v~vwd~~~--~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~ 922 (1102)
.|.|.|..+ ++. +..+.. ....-++.++|||+++++++ .+.+|.++|+.+.
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 355566555 333 333322 22356799999999877665 6789999999964
Q ss_pred ccc--------ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCC----------ceEeeeeccC--
Q 001311 923 EKQ--------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK----------LECVKQWVPR-- 980 (1102)
Q Consensus 923 ~~~--------~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~----------~~~~~~~~~~-- 980 (1102)
+.. .........| .....++|+++| ++.+. -+++|.+||+.+ .+.+..+..+
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred ccccccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 310 1112222323 356899999999 66553 789999999987 5566665533
Q ss_pred -CCCCCeeEEEEcCCCcEEEEEeC---CCe----------EEEEEcCCceeE
Q 001311 981 -ESSAPITHATFSCDSQLVYACFL---DAT----------VCVFSAANLKLR 1018 (1102)
Q Consensus 981 -~h~~~v~~l~~spd~~~l~s~s~---Dg~----------I~vwd~~~~~~~ 1018 (1102)
+|...-..+.++|||++|++++. |+. -.++|+..++..
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 22222233456899999998874 332 288999766543
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.88 E-value=6e-10 Score=124.34 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=110.9
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ce
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 894 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~ 894 (1102)
++..+++++ |+.|+.||..+++.+..+.. +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999988876 4565655666 6778888889999999999999887766544321 11
Q ss_pred -eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001311 895 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 972 (1102)
Q Consensus 895 -~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~ 972 (1102)
+..+. ++..|++++.|+.|+.||..+|+..... ..+ ....++|++..+++ +.++.|+.||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11121 3457778888999999999988753211 111 12345667777777 578999999999998
Q ss_pred EeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 973 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 973 ~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.+..+.... ....+++.+. ..+++++.||.|+.||..+|+.+-+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 765543211 2233344432 457778899999999999999877655
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=3.4e-07 Score=94.47 Aligned_cols=216 Identities=11% Similarity=0.019 Sum_probs=147.2
Q ss_pred ceeeeecCCCC--CeeEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeeeeccccc-cceeEEEecCCCEE-EEEcCC
Q 001311 838 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD 911 (1102)
Q Consensus 838 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D 911 (1102)
+.+.++. |.. ....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-... ....+++. ++.| ++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455554 443 357999999 6765555543 57999999999998887642111 12345554 4444 455568
Q ss_pred CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---Cee
Q 001311 912 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT 987 (1102)
Q Consensus 912 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~ 987 (1102)
+.+.++|..+.+...... .+ .+ ....+++||+.++++ .++.|.++|..+.+.+..+....+.. .++
T Consensus 86 ~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp SEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred CEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 899999999876543221 11 11 234577788888875 67799999999999888877533222 467
Q ss_pred EEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccC----CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311 988 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus 988 ~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
.+.|. ||+.++....++.|.+-|..+++.+.++......+ .++ .....+-.|+|+|+...+++++...+.|++-
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 88888 78666665568899999999999999998432111 110 1113345899999656678888899999999
Q ss_pred eccCCC
Q 001311 1064 EPLESE 1069 (1102)
Q Consensus 1064 ~~~~~~ 1069 (1102)
++.+.+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 997654
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=1.5e-06 Score=104.70 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=112.5
Q ss_pred eEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311 851 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 902 (1102)
Q Consensus 851 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 902 (1102)
..+++++ +..+++.++.++. |..+|..+|+.+..++. |. .+.....+..+|
T Consensus 233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 3578888 6778888877763 99999999998877653 32 222222333467
Q ss_pred C---EEEEEcCCCcEEEEEcCCCcccceeeeec---------CCCC-------C-C-----------CCCCCcEEEEccC
Q 001311 903 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD 951 (1102)
Q Consensus 903 ~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~v~~~~~spd 951 (1102)
+ .|+.++.+|.+.++|..+++......... ..+. . . ....-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 5 68899999999999999988652111000 0000 0 0 0000123788888
Q ss_pred CcEEEEE-------------------------------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC
Q 001311 952 QIHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 994 (1102)
Q Consensus 952 g~~l~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd 994 (1102)
...+.+. .++.|..||+.+++.+-.... ...+....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence 7766541 127799999999998766543 223333445557
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 995 SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 995 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.++++++.||.+++||..+|+.+.++.
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCcccchhhhhhcChhheEec
Confidence 8889999999999999999999999887
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.79 E-value=0.0012 Score=83.72 Aligned_cols=224 Identities=8% Similarity=0.029 Sum_probs=125.6
Q ss_pred eEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEeCC----------------------------
Q 001311 820 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------------------------- 869 (1102)
Q Consensus 820 ~las~sdg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------------------------- 869 (1102)
-++..+++.++|..+.+.+. ++++. -...+..++++| ..+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45555566788887754332 22232 234678888888 55554443311
Q ss_pred ---------------------CcEEEEEeecceeeeeecc-ccccceeEE---EecC-CCEEEEEc----------CCCc
Q 001311 870 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ 913 (1102)
Q Consensus 870 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~ 913 (1102)
+.|++.|-.+++.+..+.- ....+.+++ |..+ ..+|+.|+ ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2355666555555444321 223345544 3333 46888776 2477
Q ss_pred EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311 914 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 993 (1102)
Q Consensus 914 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp 993 (1102)
|.++++..++..... ..... +.+++++-- +| +|+++..+.|++|++...+.++ .....+. .|..+...-
T Consensus 866 i~vf~v~~~kL~lv~-~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~ 934 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVA-EKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT 934 (1158)
T ss_dssp EEEEEEETTEEEEEE-EEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred EEEEEEECCEEEEEE-EEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence 999999743321111 11111 355655432 34 6777778999999998665333 1111111 233333333
Q ss_pred CCcEEEEEeCCCeEEEEE--cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 994 DSQLVYACFLDATVCVFS--AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 994 d~~~l~s~s~Dg~I~vwd--~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
.+.+++.|..-..|.++. ...+++...-+ .+.+ .+++++.|.- ...++.+..+|.|.+.....
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 577888888777776654 44444443222 2222 4455888874 35888899999999998765
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.77 E-value=4.7e-06 Score=97.83 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=104.3
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeeeecccccc------cee---EEEe-cCC---
Q 001311 852 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHSKR------ITG---LAFS-HAL--- 902 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~h~~~------V~~---l~~s-~d~--- 902 (1102)
.+++.+ +..++..+..+ +.|.-+|..+|+.+-.++..... +.. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR 323 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE
Confidence 456777 56677767655 37999999999988666432111 111 1222 467
Q ss_pred CEEEEEcCCCcEEEEEcCCCcccceeeeec----------CCCCC---------------------CCCCCCcEEEEccC
Q 001311 903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQD 951 (1102)
Q Consensus 903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~v~~~~~spd 951 (1102)
+.++.++.+|.+.++|.++++..-...... ..+.. .....-..++++|+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 403 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK 403 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence 567889999999999999987643322110 00000 00001135677777
Q ss_pred CcEEEEE----------------------------------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEE
Q 001311 952 QIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATF 991 (1102)
Q Consensus 952 g~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 991 (1102)
..++++. ..+.|..||+.+++.+-..... .++..-.+
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~ 480 (599)
T 1w6s_A 404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTM 480 (599)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCE
T ss_pred CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcce
Confidence 6665542 2357888899998877665421 11211112
Q ss_pred cCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 992 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
.-.+.+++.++.||.++.||..+|+.+-+++
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3356778889999999999999999998887
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=1.8e-06 Score=89.15 Aligned_cols=200 Identities=10% Similarity=0.048 Sum_probs=137.9
Q ss_pred CeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 808 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
....++|++|+.+.++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876555543 47899999999999888653222 23355665 3456666667899999999999988
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
.++..-.. ....+++||+.|+.+..+++|.++|.++.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 88853211 2344667888777777788999999988665433222211 100 0124567777 77555544 5789
Q ss_pred EEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEE-EEEeCCCeEEEEEcCCc
Q 001311 963 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1015 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l-~s~s~Dg~I~vwd~~~~ 1015 (1102)
|.+.|..+++.+..+...+ -......++|+|+++.| +++...+.+++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988876421 01356899999998755 55557788988887654
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.73 E-value=7.7e-06 Score=86.46 Aligned_cols=202 Identities=10% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 885 (1102)
.+..+++++++..|..+. ++.|..++..+......+.........+++++++++++++-..++.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999877777665 689999999765544334333356899999993455555555678999999864322222
Q ss_pred eccccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311 886 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 960 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d 960 (1102)
..........++++|++..|..+.. .+.|.+++++.... ..+.... ......+++++++.+|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~~-----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDN-----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTT-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEECC-----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222234678999997666554443 36788888875321 1111111 1245789999988777664 56
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.|.++|..+........ + ......+++. +..|+.+. ..+.|.++|..+++.+.++.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998655433332 1 2345677764 44554444 56899999999999998886
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=4e-07 Score=92.28 Aligned_cols=201 Identities=12% Similarity=0.076 Sum_probs=135.4
Q ss_pred ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC-CEEEEEcCCCcE
Q 001311 838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQL 914 (1102)
Q Consensus 838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i 914 (1102)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -..........+++ +..+..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEE
Confidence 3445553 4443 4788887 4788888889999999999999988877 22334442233344 444455578899
Q ss_pred EEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---CeeEEE
Q 001311 915 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT 990 (1102)
Q Consensus 915 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~ 990 (1102)
.+||.++.+....... . + ....+++|++.|+++ .++.|.++|..+.+.+..+....+.. .++.+.
T Consensus 119 ~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999999776443322 1 1 123444778888886 58899999999999988877544333 446677
Q ss_pred EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC---CCCCcccceEEEecCCCCCEEEEEe
Q 001311 991 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG---VSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 991 ~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g---h~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
|. +|+.++..-.+..|.+.|..+|+.+..+......+.. .....-.+-+|+|+|+...+++||-
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 77 7876665556889999999999999999865322110 0011122348999997677777773
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=6.8e-07 Score=90.75 Aligned_cols=202 Identities=11% Similarity=0.111 Sum_probs=135.2
Q ss_pred ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEE-cCCC
Q 001311 838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADS 912 (1102)
Q Consensus 838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg 912 (1102)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........++++.|... -.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 3455553 5544 4788998 467777777776 9999999999988887543 334443334455555544 4588
Q ss_pred cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCC---CCeeE
Q 001311 913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 988 (1102)
Q Consensus 913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~ 988 (1102)
.+.+||.++.+........ + ....+++|++.|+++ .++.|.++|..+.+.+..+...... ..++.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 9999999987754332221 1 224455788888775 4678999999999998887653322 33456
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC--CCCCcccceEEEecCCCCCEEEEEe
Q 001311 989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus 989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g--h~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-+|+|+|+...+++||-
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 7776 7876666657889999999999999999865433321 0011122348999996656666663
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.69 E-value=3.9e-06 Score=101.10 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc-eeEEEecCCC-E
Q 001311 827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V 904 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~ 904 (1102)
|.|..||+.+++.+.....+. ......+.. .+.++++|+.||.|++||..+++.+..+....... .-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 789999999999887765332 233334444 56788889999999999999999988876543322 2355566776 4
Q ss_pred EEEEc
Q 001311 905 LVSSG 909 (1102)
Q Consensus 905 l~s~s 909 (1102)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.68 E-value=1e-05 Score=95.30 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=105.2
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeeeecc--ccc----cceeE---EEecCCC---
Q 001311 852 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HSK----RITGL---AFSHALN--- 903 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~--h~~----~V~~l---~~s~d~~--- 903 (1102)
.+++.+ +...+..+..+ +.|..+|..+|+.+..++. |.. .+... ....+|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP 317 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE
Confidence 466777 45566555532 3599999999988776642 211 12222 2224674
Q ss_pred EEEEEcCCCcEEEEEcCCCcccceeeeec----------CCCCC------------------C---CCCCCcEEEEccCC
Q 001311 904 VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT------------------P---TAQSDTRVQFHQDQ 952 (1102)
Q Consensus 904 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~------------------~---~~~~v~~~~~spdg 952 (1102)
.++.++.+|.+.++|..+++..-...... ..+.. + ....-..++|+|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67788999999999999887643221110 00000 0 00001356888887
Q ss_pred cEEEEE-e-------------------------------------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC
Q 001311 953 IHFLVV-H-------------------------------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 994 (1102)
Q Consensus 953 ~~l~~~-~-------------------------------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd 994 (1102)
.++.+. . ++.|..||..+++.+-.+... ..+.+..+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEEC
Confidence 777663 2 368999999999887665432 22222233335
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 995 SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 995 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.+++.++.||.|++||..+|+.+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 6677779999999999999999999887
No 257
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.66 E-value=0.0031 Score=77.64 Aligned_cols=534 Identities=12% Similarity=0.069 Sum_probs=274.1
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
...|.++....+|. |-.|+.+| +..+|..+.+... ........|.++.. .+| .|-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~-------------------~~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ-------------------PETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC-------------------CSCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC-------------------cccCCCceEEEEEe-cCC-cEEE
Confidence 45789998888886 44555544 7889987753211 00111235777765 355 4555
Q ss_pred EECCCeEEEEEccCCceeeeEEEe-e-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecC----CC
Q 001311 426 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA 498 (1102)
Q Consensus 426 ~~~d~~v~vwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h----~~ 498 (1102)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |..+ -|..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6665 57888987755321 1000 0 1134688888888887 333 4444 4778887776643221 111 12
Q ss_pred CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 578 (1102)
.|.++.. +.++..|..|+. +-+..+|..+.... .+. . .....+.++....++...+
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCCEEE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCCEEE
Confidence 3676653 444444555554 45777776543211 110 0 0112355566666665444
Q ss_pred EEeCCCeEEEEECCCcceEEEEcCCC-----CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311 579 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 653 (1102)
Q Consensus 579 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 653 (1102)
|+. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++... . ....+.
T Consensus 248 -gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~--~~~~~~------- 313 (758)
T 3ott_A 248 -GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-S--ALQFIP------- 313 (758)
T ss_dssp -EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C---CEEEE-------
T ss_pred -EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-C--ceeEEe-------
Confidence 444 458888887665432221110 112466777777776555 44445 4443211 1 111000
Q ss_pred ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311 654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 733 (1102)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 733 (1102)
....
T Consensus 314 -----------------------------------------------------------------~~~~----------- 317 (758)
T 3ott_A 314 -----------------------------------------------------------------ISQI----------- 317 (758)
T ss_dssp -----------------------------------------------------------------HHHH-----------
T ss_pred -----------------------------------------------------------------cccC-----------
Confidence 0000
Q ss_pred CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311 734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 813 (1102)
Q Consensus 734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~ 813 (1102)
........|.++....+|...+ ++.+|. ..++....... ....+..... ...-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl-~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWF-GGANGL-IRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEE-EETTEE-EEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEE-eeCCcc-eeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence 0000224577787788887444 445553 33432110000 0000100000 0000235688888
Q ss_pred EecCCCeEEEEeCCeEEEEEcCCCceeeee--cC----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc------e
Q 001311 814 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E 881 (1102)
Q Consensus 814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------~ 881 (1102)
-..+|++-+.. ++.|..+|..+++...-. .. ....|.++.... +++ |..|+..+-|.++|..+. .
T Consensus 380 ~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence 88888765543 678999998876543221 11 123577887766 554 455776667888886531 1
Q ss_pred ee--eeec---c-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311 882 VK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955 (1102)
Q Consensus 882 ~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 955 (1102)
.. ..+. + ....|.+|...++|.+-+.++..+-|..+|..+++... ...........+.++....+|.+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence 11 1111 1 12358888888888877644444458889987654321 111111111356778888888877
Q ss_pred EEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311 956 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus 956 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
+.. .+.+..|+..+++.... ...+ ....|.++... +|. |..++.+| |..||..+.+... +. ++..
T Consensus 532 igt-~~Gl~~~~~~~~~~~~~-~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---- 597 (758)
T 3ott_A 532 VGF-HGGVMRINPKDESQQSI-SFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---- 597 (758)
T ss_dssp EEE-TTEEEEECC--CCCCBC-CCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred EEe-cCceEEEecCCCceEEe-cccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence 655 45688888876654321 1111 14568888764 565 45455555 7778988776542 21 2211
Q ss_pred cccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311 1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus 1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
... ...+...+| .|..|+.+| +..++...
T Consensus 598 ~~~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 598 RFT--SLLFDPKED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp CCS--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred cee--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence 122 344443344 666677676 45566654
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.63 E-value=2.3e-05 Score=92.31 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=53.3
Q ss_pred CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE
Q 001311 869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 948 (1102)
Q Consensus 869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 948 (1102)
+|.|+.||..+++.+.++... ..+.+..+...+..++.++.|+.|+.||.++++..-.. ....+. .-..+.+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~--~~~~~~-----~~~p~~~ 514 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF--KMPSGG-----IGSPMTY 514 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEEE
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE--eCCCCc-----EeeeEEE
Confidence 578999999999887776532 23334334445667788999999999999998764322 222111 1133456
Q ss_pred ccCCcEEEEE
Q 001311 949 HQDQIHFLVV 958 (1102)
Q Consensus 949 spdg~~l~~~ 958 (1102)
..+|+.++..
T Consensus 515 ~~~G~~yv~~ 524 (571)
T 2ad6_A 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 6788866664
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=2.5e-06 Score=86.57 Aligned_cols=184 Identities=10% Similarity=0.090 Sum_probs=126.0
Q ss_pred eeEEEEecCCCeEEEEe-CC--eEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 809 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
...+.|+ ++.++.+.+ +| .|+++|+++++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 4788998 666555555 55 89999999999988876433 3433 4444 4555555567899999999999999
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
.++.... ....+++|++.|+.+..+++|.++|.++.+......... .+.. ...+..+.|. +|+..+.. .++.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCe
Confidence 8887432 223444678777776667889999999876544322211 1110 0122346665 77655555 6789
Q ss_pred EEEEEcCCceEeeeeccCCC----------CCCeeEEEEcCCCcEEEEEeC
Q 001311 963 LAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
|.+.|.++++.+..+...+- ..-.+.|||+|+++.|+..+.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999888765311 235689999999887776663
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.60 E-value=1.9e-05 Score=83.40 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=141.4
Q ss_pred CeEEEEeCCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc
Q 001311 819 SYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 893 (1102)
Q Consensus 819 ~~las~sdg~I~iwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 893 (1102)
.+|..+..+.|+.+++...... ..+......+..++|+++++.++++-..++.|.+++.........+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4566666568888888754321 11221224578999999445555555567899999987654333333223457
Q ss_pred eeEEEecCCCEE-EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e--CCeEEEEEc
Q 001311 894 TGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ETQLAIFET 968 (1102)
Q Consensus 894 ~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~--d~~i~iwd~ 968 (1102)
.+|++++++..| ++-...+.|.++++++... .... ..+. .....++++|++..|..+ . .+.|..++.
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~~~~--~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--RVLF--DTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--EEEE--ECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 889999976554 4555677899999876332 1111 1111 245889999976655553 2 368888887
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
.... ...+.. ........+++++++++|+.+. ..+.|.++|.+.......+. .. ..|..++.. +
T Consensus 154 dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------~~-----~~P~gi~~d--~ 218 (267)
T 1npe_A 154 DGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------GL-----QYPFAVTSY--G 218 (267)
T ss_dssp TSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------CC-----CSEEEEEEE--T
T ss_pred CCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec------CC-----CCceEEEEe--C
Confidence 6432 222211 2235689999999877665444 56899999998654433322 11 234466654 3
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001311 1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.++++....+.|.++|..+++
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCeEEEEeCCCCC
Confidence 5566666667899999998877
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=5.1e-05 Score=89.31 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=105.0
Q ss_pred EEEEecCCCcEEEEEeC--------------------C----CcEEEEEeecceeeeeecc--ccc----ccee-EEEe-
Q 001311 852 FLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS- 899 (1102)
Q Consensus 852 ~l~~sp~d~~~lasg~~--------------------d----g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s- 899 (1102)
.++++| +..+++++.. | +.|.-+|..+|+.+-.++. |.. .+.. +.+.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 467888 5566666653 2 5899999999998877642 321 1122 2222
Q ss_pred --cCCC---EEEEEcCCCcEEEEEcCCCcccceeeeec----------CCC-------CCC--------C----------
Q 001311 900 --HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTG-------RTP--------T---------- 939 (1102)
Q Consensus 900 --~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~-------~~~--------~---------- 939 (1102)
.+|+ .++.++.+|.++++|.++++..-...... ..+ ... .
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 4674 78889999999999999887643221110 000 000 0
Q ss_pred --CCCCcEEEEccCCcEEEE-Ee---------------------------------CCeEEEEEcCCceEeeeeccCCCC
Q 001311 940 --AQSDTRVQFHQDQIHFLV-VH---------------------------------ETQLAIFETTKLECVKQWVPRESS 983 (1102)
Q Consensus 940 --~~~v~~~~~spdg~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~h~ 983 (1102)
...-..++++|+...+++ .. ++.|..||+.+++.+-......
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-- 486 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-- 486 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence 000124677776555544 21 4789999999999876654321
Q ss_pred CCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 984 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 984 ~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
++..-.+...+.+++.++.||.++.||.++|+.+-+++
T Consensus 487 -~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 487 -PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp -CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 22221222246678889999999999999999999887
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=2.3e-05 Score=85.46 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=147.3
Q ss_pred CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC--------------------CCCCeeEEEEecCCCcEEEEE
Q 001311 808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG 866 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg 866 (1102)
...+++++++++++.++. ++.|..|+..++... .+.. ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 356788999998677766 889999998765432 2210 0135788999973454 4455
Q ss_pred eCCCcEEEEEeecceeeeeec----c-ccccceeEEEec-CCCEEEEEcC-----------------CCcEEEEEcCCCc
Q 001311 867 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 923 (1102)
Q Consensus 867 ~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~vwd~~~~~ 923 (1102)
+..+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555588888765532 2221 1 113467899999 9988776543 3668888877654
Q ss_pred ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce--EeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311 924 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 999 (1102)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~ 999 (1102)
... ..... .....++++++|++|.++ ..+.|.+|++.+.. ....+.. . .+ ...+++.++|++++
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEE
Confidence 311 11111 134689999999877664 56789999987521 1111111 1 23 78899999999777
Q ss_pred EEeC----------CCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1000 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1000 s~s~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+... .+.|..+|. .++.+..+. .+.+... ..+..+++. ++++.++....+.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6654 467888886 477777665 2222111 122356663 46777777778899999986544
No 263
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.56 E-value=0.0071 Score=76.59 Aligned_cols=175 Identities=9% Similarity=0.040 Sum_probs=106.5
Q ss_pred CeEEEEEcCCCceeeeecCCCC-CeeEEE---EecCCCcEEEEEe----------CCCcEEEEEeecceeeeee-ccccc
Q 001311 827 GKISLFNMMTFKTMATFMPPPP-AATFLA---FHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKL-KGHSK 891 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~~~~~~~-~i~~l~---~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~~l-~~h~~ 891 (1102)
+.|++.|..+++.+..+.-... .+.+++ |..+...+|++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 4688899888887766543333 344444 4332357888887 3589999999855432221 22457
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe-CCeEEE--EEc
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAI--FET 968 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-d~~i~i--wd~ 968 (1102)
+|++|+-- +|++||.. ..+|++|++...+....... .. ..+..+.....|.++++++ -..+.+ |+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~-~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECN-HY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEE-EC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEee-cc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 78887754 45555544 46799999976543221111 11 1234444545677887762 334444 555
Q ss_pred CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311 969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
...+... +..+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus 956 ~~~~L~~-~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEE-IARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEE-EEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEE-EEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 4444433 3334557889999987655 567788999999998754
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=3.9e-06 Score=85.11 Aligned_cols=184 Identities=9% Similarity=0.054 Sum_probs=124.9
Q ss_pred CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311 807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 883 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 883 (1102)
.....+.|+. +.+..+.+ +|.|+++|+++++.++.+ - ...... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3346788873 44444445 789999999999998887 2 233433 5554 4566666667899999999999999
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
.++..- ..-+.++ +|++.|+.+..+++|.++|.++.+............. -..+..+.|. +|+..+.. .+..
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCe
Confidence 988743 2224454 5788888777788999999998765443322221110 0123455666 77655555 6789
Q ss_pred EEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEEEEEe
Q 001311 963 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l~s~s 1002 (1102)
|.+.|.++++.+..+...+ -..-.+.|||+|+++.|+..+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988876421 124668999999876665554
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.53 E-value=1.5e-05 Score=80.24 Aligned_cols=203 Identities=11% Similarity=0.118 Sum_probs=134.2
Q ss_pred ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEE-EEEcCCC
Q 001311 838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS 912 (1102)
Q Consensus 838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg 912 (1102)
+.+.++ .|... ...+.|++ +.++.+.+.+| .|+++|+.+++.+..+.-.. .........+++.| +..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCC
Confidence 345555 35543 66899985 56777777654 99999999999888775332 23333333334444 4455688
Q ss_pred cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCC---CCeeE
Q 001311 913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 988 (1102)
Q Consensus 913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~ 988 (1102)
.+.+||.++.+....... +. ....+++|++.|+++ .++.|.++|..+.+.++.+....+. ..++.
T Consensus 86 ~v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999998765443222 11 234455778777775 6778999999999998887754332 34456
Q ss_pred EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCC---CCcccceEEEecCCCCCEEEEEec
Q 001311 989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus 989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
+.+. +|+.++..-.+..|.+.|..+|+.+..+......+.... ...-.+-+|+++|+.+.+++||-.
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 6665 777666555678999999999999999986654432210 111223489999976666777643
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=0.00015 Score=78.26 Aligned_cols=245 Identities=13% Similarity=0.060 Sum_probs=143.1
Q ss_pred CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311 335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 414 (1102)
Q Consensus 335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 414 (1102)
.+.++...+.-......++|+|+|+ |+++...++.|..||..... ... + .-...+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~-----~---------------~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QIH-----A---------------TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EEE-----E---------------ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EEE-----E---------------eCCCCceeE
Confidence 3444555555457789999999998 57777678999999987542 211 0 112368899
Q ss_pred EEccCCCeEEEEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee-eE
Q 001311 415 IWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY 491 (1102)
Q Consensus 415 ~~spdg~~las~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~-~~ 491 (1102)
+++++|+++++..... .|..+|..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 9999999766654432 4667777777642 222221 122334555555554 566666688999999776532 22
Q ss_pred Eee---------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311 492 IFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562 (1102)
Q Consensus 492 ~~~---------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 562 (1102)
... +.....+.+ +++. +.+.++-...+.|..++++...... ...+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~------------- 211 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ------------- 211 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence 111 111223444 3332 2344555667899999987521110 000000 00
Q ss_pred CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc---CCCCEEEEEECCC
Q 001311 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDN 628 (1102)
Q Consensus 563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg 628 (1102)
.....++++++|+++++....+.|.++|.. ++...............+++|. ++++.|++.+..+
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 122336777787776666677899999975 5543322212122357889998 8888888776643
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=3.7e-05 Score=90.27 Aligned_cols=250 Identities=12% Similarity=0.108 Sum_probs=150.8
Q ss_pred EEEecCCCe----EEEEe-CCeEEEEEcCCCceeeeecCCC----CCeeE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001311 812 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY 875 (1102)
Q Consensus 812 l~~s~d~~~----las~s-dg~I~iwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~lasg~------~dg~v~vw 875 (1102)
++++|.+.. |++++ |+.|.-+|..+++.+....... ..+++ -.+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66666 8999999999999887654322 02221 1222 444 44444 37999999
Q ss_pred Eeecceeeeeecccccc-------------------------------------c-eeEEEecCCCEEEEEcCCC-----
Q 001311 876 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGADS----- 912 (1102)
Q Consensus 876 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~Dg----- 912 (1102)
|..+|+.+-++...... + ..+++.++..++..+..++
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999987665422110 1 1356667777777776653
Q ss_pred -----------cEEEEEcCCCcccceeeeecCCCC--CCCCCCCcEEEEc-cCC---cEEEEE-eCCeEEEEEcCCceEe
Q 001311 913 -----------QLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFH-QDQ---IHFLVV-HETQLAIFETTKLECV 974 (1102)
Q Consensus 913 -----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s-pdg---~~l~~~-~d~~i~iwd~~~~~~~ 974 (1102)
.|..+|.++++..- ......... ........-+... .+| ..++.+ .+|.++++|..+|+.+
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W-~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKF-GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceee-EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 78999999987532 211111000 0000011112222 567 445544 8899999999999987
Q ss_pred eeeccCC-----------CCCCe--------------------------eEEEEcCCCcEEEEEe---------------
Q 001311 975 KQWVPRE-----------SSAPI--------------------------THATFSCDSQLVYACF--------------- 1002 (1102)
Q Consensus 975 ~~~~~~~-----------h~~~v--------------------------~~l~~spd~~~l~s~s--------------- 1002 (1102)
....... ...++ ..++|+|+..++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 6654221 01111 2467788777665431
Q ss_pred ------------------------CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311 1003 ------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus 1003 ------------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
.+|.|..||+.+|+.+-+........ ..+ +.. .+.+++.++.||
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~-------~g~--~~t---agg~vf~gt~dg 494 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW-------GGT--MAT---AGDLVFYGTLDG 494 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC-------SBC--EEE---TTTEEEEECTTS
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc-------Ccc--eEe---cCCEEEEECCCC
Confidence 34789999999999887765111000 011 111 357888899999
Q ss_pred cEEEEeccCCCcccccCCC
Q 001311 1059 GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus 1059 ~v~vW~~~~~~~~~~~~~~ 1077 (1102)
.|+.||..+++..|+..-+
T Consensus 495 ~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEeeCC
Confidence 9999999999988887543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=2.9e-05 Score=91.37 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc-eeEEEecCCCE
Q 001311 826 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNV 904 (1102)
Q Consensus 826 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~ 904 (1102)
+|.|..||+.+++.+........ +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q 542 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence 47799999999998766543322 21111222 35577789999999999999999998887544322 23677778864
Q ss_pred EE
Q 001311 905 LV 906 (1102)
Q Consensus 905 l~ 906 (1102)
.+
T Consensus 543 Yv 544 (582)
T 1flg_A 543 YL 544 (582)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.42 E-value=4.1e-05 Score=77.08 Aligned_cols=187 Identities=9% Similarity=0.090 Sum_probs=124.8
Q ss_pred CCCeeEEEEecCCCeEEEEe-C--CeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311 806 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s-d--g~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 881 (1102)
......+.|+. +.++.+.+ + +.|+.+|+.+++.++.+...... -..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34466889986 45444444 3 48999999999998887643332 1334444 45666666788999999999999
Q ss_pred eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001311 882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 960 (1102)
Q Consensus 882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d 960 (1102)
.+.++.... .=+.+ ++|++.|+.+..+++|.++|.++.+......... .+.. -..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCC
Confidence 999887432 22344 4577777766678899999999876544322221 1100 0122344444 67655555 67
Q ss_pred CeEEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEEEEEe
Q 001311 961 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l~s~s 1002 (1102)
..|.+.|.++++.+..+...+ -..-.+.|+++|+++.|+..+
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 899999999999988876431 123568999999877766665
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=2.6e-05 Score=95.57 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=95.3
Q ss_pred CeeEEEEe-cCCCeEEEEEecCC----eEEEEeCCCC-eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311 348 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 421 (1102)
Q Consensus 348 ~v~~v~~s-pdg~~llasg~~d~----~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 421 (1102)
.+...+|| |||++|+.+.+.+| +|+++|+.++ +.+.. .+ ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KV---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CE---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------cc---cCceeeEEEecCCC
Confidence 67889999 99998666655443 5999999988 63210 01 11234689999999
Q ss_pred eEEEEECC-----CeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCe-ee--E
Q 001311 422 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 491 (1102)
Q Consensus 422 ~las~~~d-----~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~vWd~~~~~-~~--~ 491 (1102)
.|+....| ..|.++++.++...... .+. .+......+.|+|||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 35888888776422111 122 223446788999999963333322 23468889988762 22 3
Q ss_pred Ee-ecCCCCeEEEeeeecCCccEEEEEeCC--C--eEEEEEcCC
Q 001311 492 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN 530 (1102)
Q Consensus 492 ~~-~~h~~~v~~v~~~~~~~~~~l~s~s~d--g--~i~~wd~~~ 530 (1102)
.+ .+..+...++.|+ .++.+++....+ + .|..+++.+
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 3344555555432 222344444443 2 566666654
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00013 Score=78.58 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=136.0
Q ss_pred cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311 740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 819 (1102)
Q Consensus 740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~ 819 (1102)
.....++++++|+.+++-..++.|..|+... ... ..|. ....+..++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------~~~-----~~~~---------------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------NQQ-----IHAT---------------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------CEE-----EEEE---------------CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------ceE-----EEEe---------------CCCCceeEEEcCCCc
Confidence 3567899999998666655678887776421 100 0111 123578899999999
Q ss_pred eEEEEe-CC--eEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce--eee--------e
Q 001311 820 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKS--------K 885 (1102)
Q Consensus 820 ~las~s-dg--~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--~~~--------~ 885 (1102)
++++.. .+ .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++ ... .
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 666554 22 477777777765432221 122345556555 56555555468899999876542 210 0
Q ss_pred eccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311 886 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 962 (1102)
Q Consensus 886 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~ 962 (1102)
..+.-.....| ++|+++|. +-...+.|.+++++. ++.......... .....++++++|++.++. ..+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 00111123445 88887654 555678899999875 332112222111 134789999999876663 5788
Q ss_pred EEEEEcCCceEeeeeccCCCCCCeeEEEEc---CCCcEEEEEeCCC
Q 001311 963 LAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDA 1005 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~Dg 1005 (1102)
|.+++.. ++.............+++++|. ||++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999975 5543221111224578999999 8988777666543
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.36 E-value=0.00012 Score=79.70 Aligned_cols=255 Identities=10% Similarity=0.077 Sum_probs=143.6
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcc--cc-c---cccCCCCCCeEEEEEcc-C
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP--LQ-A---ALVKDPGVSVNRVIWSP-D 419 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~~sp-d 419 (1102)
....+++|+++|+. +.++..++.|..||..+++...- .. ...... .. . .........+..+++.+ +
T Consensus 19 ~~p~~i~~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~-~~-----~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 19 YAPNSFTFDSTNKG-FYTSVQDGRVIKYEGPNSGFVDF-AY-----ASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp SCCCCEECCTTCSS-EEEECTTSEEEEECCTTTCEEEE-EE-----SCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CCceEEEEcCCCCE-EEEEcCCCeEEEECCCCCceEEE-ec-----ccccccccccccccchhccccCCCCceEEEcCCC
Confidence 45678999999984 67788889999999886543321 00 000000 00 0 00000123578999998 5
Q ss_pred CCeEEEEECCCeEEEEEccCCceeeeEEE-eec-cccCEEEEEEcC-CCCeeEEEEecC-----------------CCcE
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI 479 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~~~-----------------d~~i 479 (1102)
|+ |.++...+.|..+|..++.. ..+.. ..+ .......+++.+ +|. +.++... ++.|
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence 55 55555555688888776532 22111 111 113478899999 887 4554322 3678
Q ss_pred EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
..||..+++......+ ......+++ ++++..|+.+ +..+.|.+|++..... ..... +.
T Consensus 168 ~~~d~~~~~~~~~~~~-~~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~--------~~~~~----------~~ 226 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKE-LHVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKK--------GTAEV----------LV 226 (322)
T ss_dssp EEEETTTTEEEEEEEE-ESCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTT--------TCEEE----------EE
T ss_pred EEEeCCCCEEEEeccC-CccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcC--------Cccce----------EE
Confidence 8999877765433222 223455676 4566655444 5678999999875311 00000 00
Q ss_pred ccccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCcceEEEEcCCCC--CCCcCeEEEcCCCCEEEEEEC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTN 626 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~ 626 (1102)
. ..+ ...++++++|++.++... .+.|..+|. .++.+..+..... ...+.++++ .+++++++...
T Consensus 227 ~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~ 302 (322)
T 2fp8_A 227 K-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF 302 (322)
T ss_dssp E-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred e-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence 0 001 334666777776665443 467888887 4777766654332 234566666 35665555556
Q ss_pred CCcEEEEEccC
Q 001311 627 DNGIKILATSD 637 (1102)
Q Consensus 627 dg~i~iwd~~~ 637 (1102)
++.|..+++..
T Consensus 303 ~~~i~~~~~~~ 313 (322)
T 2fp8_A 303 HGSVGILVYDK 313 (322)
T ss_dssp CSEEEEEEC--
T ss_pred CCceEEEeccc
Confidence 78888888653
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=3e-05 Score=95.06 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=110.6
Q ss_pred CeeEEEEe-cCCCeEEEEe--CC----eEEEEEcCCC-ceeee-ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEE
Q 001311 808 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 873 (1102)
Q Consensus 808 ~i~~l~~s-~d~~~las~s--dg----~I~iwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~ 873 (1102)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999999765 22 4999999988 63211 11 1235689999 77777766655 3688
Q ss_pred EEEeecceee--eeec-cccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311 874 IYNVRVDEVK--SKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947 (1102)
Q Consensus 874 vwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 947 (1102)
++++.++... ..+. .+.....++.|||||++|+..+. ...|.++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 8888765322 2222 22234567899999999886653 3458888888752111 0011222111 1233444
Q ss_pred EccCCcEEEE-EeC-----CeEEEEEcCCceEeee-eccCCCCCCeeEEEEcCCCcEEEEEeCCCeE--EEEEc
Q 001311 948 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATV--CVFSA 1012 (1102)
Q Consensus 948 ~spdg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I--~vwd~ 1012 (1102)
|+. |..|+. +.. ..|..+++.++..... +........+..+.+. .+.++++...|+.. +++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 443 555444 422 2677778765322122 2211112245555554 34455677778864 45564
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.30 E-value=0.0011 Score=72.07 Aligned_cols=236 Identities=10% Similarity=0.021 Sum_probs=133.4
Q ss_pred CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311 806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 882 (1102)
...+.++.+++ +..++++.++.|.. ....++.-.... .+...+..+++.+ ++.+++.+ .+|.|+.- ...|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence 44678899876 55566665775544 223333322222 2335578888877 67766655 46654321 112322
Q ss_pred ee-eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311 883 KS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 961 (1102)
Q Consensus 883 ~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~ 961 (1102)
-. ....+...+.++++.+++.+++.+...+..+-+|-. ++. ...+... ....+..+++++++..++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t--W~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA--WEPHNRT-----TSRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS--CEEEECC-----SSSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc--eeECCCC-----CCCccceeEECCCCCEEEEeCCc
Confidence 11 123455678899999999888777544433334321 111 1122111 11367889999999988888888
Q ss_pred eEEEEEcCCceEeeeeccC--CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311 962 QLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
.+++.+...++.-..+... .+...+.++++.+++.+++++ .+|.| .+..+.|+.-..+......+ ..++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence 8877653434433332211 123468999999988877765 47777 45556665444333110011 1244
Q ss_pred EEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1040 VIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1040 ~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
.+.|.+ +..+++++.+|.|.-++-
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred EEEEEC--CCceEEEcCCceEEEEcC
Confidence 677764 356777788998766553
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00025 Score=80.22 Aligned_cols=247 Identities=9% Similarity=0.039 Sum_probs=146.6
Q ss_pred CeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CC----cEEEEEeecc
Q 001311 808 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 880 (1102)
Q Consensus 808 ~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~~ 880 (1102)
....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 467899998 455666665 5789999998765443 333455689999999 7875555543 22 233344 333
Q ss_pred eee--eeeccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 881 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 881 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
... ..+. ......+++++| ++.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 2222 123457789999 6777777777889999998865431 11222111 23578999999996666
Q ss_pred E--eCCeEEEEEcCC--ceE--eeeeccC----CC---------CCCee-EEEEc--------CCCcEEEEEeCCCeEEE
Q 001311 958 V--HETQLAIFETTK--LEC--VKQWVPR----ES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1009 (1102)
Q Consensus 958 ~--~d~~i~iwd~~~--~~~--~~~~~~~----~h---------~~~v~-~l~~s--------pd~~~l~s~s~Dg~I~v 1009 (1102)
+ ..+.|..++... +.. +..+... +. -.... .+++. ++|.++++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899887653 222 1111100 10 11233 55553 34666666666788999
Q ss_pred EEcCCceeEEEeCCCc--ccC--CC---CCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1010 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1010 wd~~~~~~~~~~~~~~--~~~--~g---h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
++ .+|.......... +.. .| ....--.|..+++.|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5665544332100 000 01 001112577999998657777777777888888764
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.00028 Score=72.26 Aligned_cols=217 Identities=11% Similarity=0.113 Sum_probs=134.0
Q ss_pred eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec--cccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311 842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSS 919 (1102)
Q Consensus 842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~ 919 (1102)
.+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+. +. ...-.|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4555567899999999556677778889999999987 77777763 32 34678899999987777767788999988
Q ss_pred CCCcccc-eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---c---eEeee--eccCCCCCCeeEE
Q 001311 920 DGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---L---ECVKQ--WVPRESSAPITHA 989 (1102)
Q Consensus 920 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~---~---~~~~~--~~~~~h~~~v~~l 989 (1102)
....... .......-+..........++|+|++..|.++ ......+|.+.. . ..... +....+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 7644211 11222111112223567899999999777775 333344444431 1 11111 1111234568999
Q ss_pred EEcCCC-cEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311 990 TFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus 990 ~~spd~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
++.|.. ++++.......+.++|.. |+.+..+....-.. +-...-..+=.|+|.+ +|++.++ ++-+.++++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence 999964 455666677889999966 55776666332110 0000012344899999 5776555 6666555544
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00055 Score=70.10 Aligned_cols=212 Identities=9% Similarity=0.056 Sum_probs=127.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
-.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ......|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 346899999999988888888889999999998 77665422 222 24678899999998777
Q ss_pred EEECCCeEEEEEccCCceee--eEEEee----ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCeeeEEee-
Q 001311 425 VAYSRHIVQIYSYHGGDEVR--QHLEID----AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE- 494 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~--~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~---~~~~~~~~~- 494 (1102)
+.-.++.+.++++.....+. ....+. ........|+|+|+++. |+++.......||.+. .+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence 76677889999987655322 111111 23456789999999985 3333333333444432 112222221
Q ss_pred ------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311 495 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568 (1102)
Q Consensus 495 ------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~ 568 (1102)
.+...+.++++++. .+.+++.....+.|..+|.... ....+....+ ..-+ ...-...-.+
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g-----------~~~l-~~~~~qpEGi 229 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKG-----------SRGL-SHNIKQAEGV 229 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTT-----------GGGC-SSCCCSEEEE
T ss_pred hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCc-----------cCCc-ccccCCCCee
Confidence 13345678888764 4567777777888888886632 2222211110 0000 0000123346
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC
Q 001311 569 QFDTTKNRFLAAGDDFSIKFWDMD 592 (1102)
Q Consensus 569 ~~~~~~~~l~~~~~dg~i~iwd~~ 592 (1102)
+++++|+ |+..++.+.++.+...
T Consensus 230 a~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 230 AMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EECTTCC-EEEEETTTEEEEEEC-
T ss_pred EECCCCC-EEEEcCCceEEEEEec
Confidence 6666666 5555887777777643
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.00029 Score=79.61 Aligned_cols=248 Identities=8% Similarity=0.025 Sum_probs=147.2
Q ss_pred CeeEEEEecC--CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---C-cEEEEEeecc
Q 001311 808 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 880 (1102)
Q Consensus 808 ~i~~l~~s~d--~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~ 880 (1102)
....++++++ +..|..+. .+.|+.+|..++.... +.........++|++ +++++++...+ . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999985 44555554 5889999997766543 444555689999999 77754443311 1 2333332221
Q ss_pred eee-eeeccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 881 EVK-SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 881 ~~~-~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
... ..+. .-.....+++.+ ++.+.++-..++.|+.++..++..... ...... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 110 1111 223456789999 677776766778899999876543111 111111 1 123469999999966664
Q ss_pred --eCCeEEEEEcC--CceEe--eeecc----CC---------CCCCeeEEEE---------cCCCcEEEEEeCCCeEEEE
Q 001311 959 --HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus 959 --~d~~i~iwd~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------spd~~~l~s~s~Dg~I~vw 1010 (1102)
..+.|+.++.. ++... ..+.. .+ .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789988765 33211 11110 01 1234678999 7778777777777899999
Q ss_pred EcCCceeEEEeCCCc-----ccCCC---CCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311 1011 SAANLKLRCRINPSA-----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus 1011 d~~~~~~~~~~~~~~-----~~~~g---h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
+. +|.......... + ..| ....--+|..|++.|.++.++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~-~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGY-VDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCC-BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCcccc-CCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 665543332111 0 001 001123477999996577888877778888888774
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.24 E-value=0.00091 Score=72.20 Aligned_cols=208 Identities=6% Similarity=-0.056 Sum_probs=130.2
Q ss_pred CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
...+..++|++++..|..+. ++.|..+++.+ ......+.........+++++.+++++++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999998877776665 68899999876 2222223323345688999874556666666778999999865
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcCC--CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
......+........++++.|++..|..+... +.|...++++... ..+..... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~~~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEEECCC-----CCceEEEEeccCCEEEE
Confidence 43322233233456889999876666555443 6788888865321 11111111 24578999998877776
Q ss_pred E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+ ..+.|..+|.....................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 5578999998753322221111223456788885 45566666677899999988887666554
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.22 E-value=0.0015 Score=71.57 Aligned_cols=205 Identities=10% Similarity=-0.006 Sum_probs=132.8
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478999998777777665 68899999887654444443344578899997456666666667899999976543222
Q ss_pred eeccccccceeEEEecCCCEEEEE-cCC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311 885 KLKGHSKRITGLAFSHALNVLVSS-GAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 960 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d~~~l~s~-s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d 960 (1102)
.+...-....+|++.|++..|... ..+ +.|...++++.... . ..... ......+++++++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~--~~~~~---~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---I--IADTH---LFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---E--SCCSS---CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---E--EEECC---CCCcceEEEeCCCCEEEEEECCC
Confidence 233333456889999866655544 344 67888888763221 1 11111 1245789999977777664 56
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.|..++.........+. ........+++ .++.++++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 789999987543322222 22456788888 355555666667889988877777666554
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.22 E-value=0.00074 Score=73.99 Aligned_cols=237 Identities=12% Similarity=0.044 Sum_probs=147.6
Q ss_pred eeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311 809 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 888 (1102)
Q Consensus 809 i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 888 (1102)
.+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+..
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 45555555 345666666678888887655444443 3445899999984565666655778999999876543333332
Q ss_pred ccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC-CeEE
Q 001311 889 HSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLA 964 (1102)
Q Consensus 889 h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d-~~i~ 964 (1102)
......++++.+.+. +.++-...+.|.+.++++... ..... .+ . .....++++|.+..|..+ .. +.|.
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~--~~-l---~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TT-C---SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEe--CC-C---CCcceEEEecCcCeEEEeccCCCCEEE
Confidence 334467899997554 455666678899999876432 11111 11 1 245889999976666654 34 6788
Q ss_pred EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311 965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus 965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
.++.+......... ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|.++++
T Consensus 186 r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav 253 (349)
T 3v64_C 186 ASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITV 253 (349)
T ss_dssp EEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEE
T ss_pred EEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEE
Confidence 88876543322221 2245688999998777665554 5678999998754333222200 123556777
Q ss_pred cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
. ++.+.++-...+.|...+..+++
T Consensus 254 ~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 F--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEecCCCCeEEEEEccCCC
Confidence 4 45677777777888888865665
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.17 E-value=0.00015 Score=87.60 Aligned_cols=237 Identities=10% Similarity=-0.025 Sum_probs=129.8
Q ss_pred CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEe-CC-----CcEEEEEee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNVR 878 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~-~d-----g~v~vwd~~ 878 (1102)
...++++..++++++.|+ ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344678889999999987 46899999887543322111212 123455666 788999988 44 479999998
Q ss_pred cceeeeee----ccccccceeEEEecCCCEEEEEcCCC---------cEEEEEcCCCcccceeeeecCCCC---CCCCCC
Q 001311 879 VDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQS 942 (1102)
Q Consensus 879 ~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~ 942 (1102)
+++-...- ......-....+..++..++.++.|+ .+..||..+..... ........ ......
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBT
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCC
Confidence 76532210 00000000012234555555555443 46788887654211 11111100 000012
Q ss_pred CcEEEEcc-CCcEEEEE-eCC-----------eEEEEEcCCceEeeeeccCCC-CCCeeEEEEcCCCcEEEEEeCC----
Q 001311 943 DTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD---- 1004 (1102)
Q Consensus 943 v~~~~~sp-dg~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~D---- 1004 (1102)
-..+.|.. +++.++++ .++ .+.+||..+...........+ ...-.+++..|||++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 24455543 67777774 321 688889888766543201112 2233456778899999999865
Q ss_pred -------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec
Q 001311 1005 -------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus 1005 -------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
..+.+||..+++-.. +. .++.....+ ......| |+++++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence 468999998876543 21 111111011 1233446 6889999985
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.16 E-value=0.001 Score=73.98 Aligned_cols=205 Identities=10% Similarity=-0.012 Sum_probs=133.3
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
..+..++|++.+..|.... .+.|+.+++........+.........+++++.+++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578899998777776665 68899999887654444443344567899997456666666667788888876443323
Q ss_pred eeccccccceeEEEecCCCEEEEEc-CC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311 885 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 960 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d 960 (1102)
.+........+|++.|++..|..+. .+ +.|...++++... ..... .+. .....++|+|++..|..+ ..
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~~----~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD--THL----FWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE--CCC----CCeeeEEEeCCCCEEEEEECCC
Confidence 3333334568899998766665544 33 6788888776322 11111 111 234789999877777664 56
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.|..++.........+. ........+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 268 ~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 268 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 789999987543322222 22456788888 455566666677889999977887776665
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.12 E-value=0.0043 Score=67.21 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=112.4
Q ss_pred CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEE-EEe--eccee
Q 001311 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV 882 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~--~~~~~ 882 (1102)
..+..+.+.++++.++++.++.|.. ....++.-. ...+....+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788878888777776665432 112232222 2234456789999999 788887664 455444 331 22233
Q ss_pred eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001311 883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 962 (1102)
Q Consensus 883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~ 962 (1102)
+. ......+..+++.++++.++. +.+|.+++++.+.++. ...+... .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 22 234567888999999876654 4578777765332221 1111111 001112467889999999888888887
Q ss_pred EEEEEcCCceEeeeecc-CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311 963 LAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus 963 i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
+ .+..+.|+.-..+.. ..+...+.++.|.++++ +++++.+|.|.-++
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 7 444554543322221 12245688899986665 55566799877665
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.11 E-value=0.0022 Score=71.70 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=133.7
Q ss_pred CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
...+..++|++.+..|..+. .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999998777777765 688999998752 223333334456889999974566666666778999998875
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcC--CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
......+...-....+|++.|.+.+|..... .+.|...++++.... .... .+ . .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~-l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC-C---CceEEEEEEeCCCEEEE
Confidence 4433333333345688999997666655542 367888888764321 1111 11 0 24588999998887777
Q ss_pred E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+ ..+.|..+|++...........+.......+++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 4678999998754433332222224456778873 34555666667889999988887766654
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.09 E-value=0.0042 Score=66.95 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=126.3
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccCC---ceee
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR 444 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~~---~~~~ 444 (1102)
..|+..|+.+.+.... + .....+..++|++++..|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6788899887654331 1 123467899999976666555 45689999998762 2222
Q ss_pred eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC-CeE
Q 001311 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI 523 (1102)
Q Consensus 445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d-g~i 523 (1102)
. .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222245688999876664 4566667889999997654433333333455677776432 33344444333 677
Q ss_pred EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcC
Q 001311 524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDA 602 (1102)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 602 (1102)
...+++............. ....+++++++..|+.+. ..+.|..+|++..........
T Consensus 146 ~~~~~dG~~~~~~~~~~~~---------------------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQ---------------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp EEEETTSCCEEEEECSSCS---------------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEEcCCCCCeEEEEECCCC---------------------CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence 7776653221111111112 234455665555565554 567899999874333222222
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 603 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 603 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.........+++. .+..+++-...+.|..++..++
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 2222234577775 3555555556778888887666
No 287
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.0018 Score=71.97 Aligned_cols=216 Identities=10% Similarity=-0.030 Sum_probs=128.9
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
.........+..++|++.+..|+.+-...+.|..++......... +.........+++.+.
T Consensus 109 ~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~~~p~glavd~~ 169 (386)
T 3v65_B 109 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGLESPGGLAVDWV 169 (386)
T ss_dssp EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSCSCCCCEEEETT
T ss_pred EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCCCCccEEEEEeC
Confidence 334445567899999998877777777788999999886543221 1222234577999986
Q ss_pred CCeE-EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCeeeEEeecCC
Q 001311 420 GSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 420 g~~l-as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
+..| ++-...+.|.+.++++..... .+.........|++.|.+.. ++++-... +.|...++.............
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 245 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHL 245 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 5555 444556788888887654221 12233356789999988775 34444444 788888865433333333334
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
...+.+++++.. +.+.++-+..+.|..+|++.......+........ .+++ ..+..+
T Consensus 246 ~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~---------------------giav-~~~~ly 302 (386)
T 3v65_B 246 FWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPF---------------------AITV-FEDSLY 302 (386)
T ss_dssp SCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEE---------------------EEEE-ETTEEE
T ss_pred CCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCce---------------------EEEE-ECCEEE
Confidence 456788885433 34455555678888888765332222221112222 2333 122334
Q ss_pred EEEeCCCeEEEEECCCcceEEEEc
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~ 601 (1102)
++-...+.|..+|..+++.+..+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 444567778888866666655554
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.06 E-value=0.00025 Score=85.57 Aligned_cols=243 Identities=12% Similarity=0.021 Sum_probs=139.3
Q ss_pred EEEEec-CCCeEEEEe-CC-----------eEEEEEcCCCcee--eeecC-CCCCeeEEEEecCCCcEEEEEeC-CCcEE
Q 001311 811 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFMP-PPPAATFLAFHPQDNNIIAIGMD-DSSIQ 873 (1102)
Q Consensus 811 ~l~~s~-d~~~las~s-dg-----------~I~iwd~~~~~~~--~~~~~-~~~~i~~l~~sp~d~~~lasg~~-dg~v~ 873 (1102)
.+++.+ +++.++.|+ +. .+.+||..+.+-. ..+.. +.....++++.. +++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888875 21 5889998876532 22322 333345677778 8999999984 45899
Q ss_pred EEEeecceeeeeeccccccc-eeEEEecCCCEEEEEc-CC-----CcEEEEEcCCCcccceee---eecCCCCCCCCCCC
Q 001311 874 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSD 943 (1102)
Q Consensus 874 vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----g~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v 943 (1102)
+||..+++-...-.-+..+. .++++.+++++++.|+ .+ ..+.+||..+.+-..... .......
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------- 341 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------- 341 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-------
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-------
Confidence 99998765332222122222 2355667999999998 44 468999998754211100 0011100
Q ss_pred cEEEEccCCcEEEE----------EeCCeEEEEEcCCceEeeeeccCC-------CCCCeeEEEEc-CCCcEEEEEeCCC
Q 001311 944 TRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA 1005 (1102)
Q Consensus 944 ~~~~~spdg~~l~~----------~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~s-pd~~~l~s~s~Dg 1005 (1102)
....+..+++.++. +....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 00112233333333 234567889988776443322110 01123444554 4788888888543
Q ss_pred -----------eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----------CcEEEE
Q 001311 1006 -----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1063 (1102)
Q Consensus 1006 -----------~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----------g~v~vW 1063 (1102)
.|.+||..+..-.... ...++.....+ +....| |+++++.|+.+ ..+.+|
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~-----~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFH-----TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSC-----EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccC-----CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 6888888877654332 01123221111 345556 57899999865 468999
Q ss_pred eccCCC
Q 001311 1064 EPLESE 1069 (1102)
Q Consensus 1064 ~~~~~~ 1069 (1102)
|+.+.+
T Consensus 494 dp~t~~ 499 (656)
T 1k3i_A 494 VPEQDT 499 (656)
T ss_dssp EGGGTE
T ss_pred cCCCCc
Confidence 998754
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.00 E-value=0.0019 Score=68.58 Aligned_cols=196 Identities=9% Similarity=0.147 Sum_probs=125.4
Q ss_pred CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC----c---EEEEEeC---CCcEEEEEee--cceee
Q 001311 817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGMD---DSSIQIYNVR--VDEVK 883 (1102)
Q Consensus 817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~~---dg~v~vwd~~--~~~~~ 883 (1102)
...+++... .+.+.+||+ +++.+..+.. +.+..+..-| +- + ++++... +++|.+|++. +++ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 334444444 688999999 7888888864 5677777766 32 1 2333333 5799999884 333 4
Q ss_pred eeecc------cc-ccceeEEE--ecC-CC-EEEEEcCCCcEEEEEcCC---CcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311 884 SKLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFH 949 (1102)
Q Consensus 884 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s 949 (1102)
..+.. .. ..+..+|+ ++. ++ ++++...+|.+..|++.. +.... .....+.-. ..+..++..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~-~lVR~f~lg----sq~EgcvvD 188 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG-KKVRAFKMN----SQTEGMAAD 188 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE-EEEEEEECS----SCEEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc-eEEEEecCC----CCcceEEEc
Confidence 43321 11 56778888 664 44 688888899999999843 22222 222222211 357889999
Q ss_pred cCCcEEEEE-eCCeEEEEEcC-----CceEeeeeccCCCCCCeeEEEE--cCCCc-EEEEEe-CCCeEEEEEcC-CceeE
Q 001311 950 QDQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1018 (1102)
Q Consensus 950 pdg~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~l~~--spd~~-~l~s~s-~Dg~I~vwd~~-~~~~~ 1018 (1102)
+...+|.++ .+..|..|+.+ +++.+..+....-...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 988888887 44556666654 3455554432222347888888 56666 666666 67799999997 78888
Q ss_pred EEeC
Q 001311 1019 CRIN 1022 (1102)
Q Consensus 1019 ~~~~ 1022 (1102)
..|.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0024 Score=71.96 Aligned_cols=253 Identities=9% Similarity=0.011 Sum_probs=149.2
Q ss_pred CeeEEEEec-CCCeEEEEe--CCeEEEEEcCCCceeeeecCC---CCCeeEEEE-------ecCCCcEEEEEeCCC----
Q 001311 808 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS---- 870 (1102)
Q Consensus 808 ~i~~l~~s~-d~~~las~s--dg~I~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg---- 870 (1102)
....|+|+| +...|.++. .+.|++.|..++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 367999998876665444322 235899999 99 777565555443
Q ss_pred ---cEEEEEeec-ceee-----eeeccccccceeEEEecC-CCEEEEEcCCCcEEEEEcC-------CCcc------c--
Q 001311 871 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 925 (1102)
Q Consensus 871 ---~v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~-------~~~~------~-- 925 (1102)
.|.+++... +... ..+.. -....+++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665443 2221 12221 123467889995 5566667778889999997 4432 0
Q ss_pred --ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceEe--eeec----cCCC---------CC
Q 001311 926 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA 984 (1102)
Q Consensus 926 --~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~~--~~~~----~~~h---------~~ 984 (1102)
...+...... .....++|+|+|++|.++ ....|+.++.. ++... ..+. ..+. -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222221 235789999999966554 56788886543 33221 1111 1111 12
Q ss_pred Cee-EEEEc-------CCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCccc-----------CCC---CCCCcccceEEE
Q 001311 985 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL-----------PAG---VSSSNVHPLVIA 1042 (1102)
Q Consensus 985 ~v~-~l~~s-------pd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~-----------~~g---h~~~~v~~~~v~ 1042 (1102)
... .++.. .+|.++++=...+.|+.++ .+|.. .++.-.... ..| ....--.|..|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 5667777767788999999 56644 333211000 011 011123477999
Q ss_pred ecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1043 AHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.++++.++++-...+.|+.++++...
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998547777777778899999987655
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0022 Score=72.32 Aligned_cols=253 Identities=11% Similarity=0.102 Sum_probs=137.8
Q ss_pred CCeeEEEEec-CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311 347 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 425 (1102)
Q Consensus 347 ~~v~~v~~sp-dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 425 (1102)
.....|+|+| ++..|+++-.. +.|+.+|..+++... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4678999998 45554554443 889999998765443 1223456889999999996666
Q ss_pred EECC-C----eEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCC
Q 001311 426 AYSR-H----IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEA 498 (1102)
Q Consensus 426 ~~~d-~----~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~ 498 (1102)
+... + .+.+.+.. +.... ...+. .......++++| ++. ++++-..++.|..+|..++....... +...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 33334433 32221 11122 123457788999 555 56666677899999988776532222 1223
Q ss_pred CeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEcc------CCceeeeccccCceeEEEEc
Q 001311 499 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA------DGTRTYQGFRKRSLGVVQFD 571 (1102)
Q Consensus 499 ~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~~~~~~~~i~~~~~~ 571 (1102)
....++| +++++ +.++-...+.|..++.+....... .+..++-.+ ++. .....-..+...+++.
T Consensus 271 ~P~gia~--~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~-~~~a~~~~P~~gv~v~ 341 (430)
T 3tc9_A 271 WEFHIQF--HPSGNYAYIVVVNQHYILRSDYDWKTKRLT------TPYIVCGQQGAKDWVDGV-GKKARMHAPRQGTFVK 341 (430)
T ss_dssp CCEEEEE--CTTSSEEEEEETTTTEEEEEEEETTTTEEC------CCEEEEECTTCBCCBCEE-GGGCBBSSEEEEEEEE
T ss_pred cceeEEE--cCCCCEEEEEECCCCEEEEEeCCccccccc------ceEEEeccCCCCCCCCCC-CcceEeCCCcceEEEc
Confidence 4567887 45566 455556678899988764311110 000111000 100 0000001111134442
Q ss_pred --------CCCCEEEEEeCCCeEEEEECCCcceEEEEcC---------CC------CCCCcCeEEEcCC-CCEEEEEECC
Q 001311 572 --------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTND 627 (1102)
Q Consensus 572 --------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~d 627 (1102)
++++.+++-...+.|+.++. +|........ .+ .......++++++ +.++++-..+
T Consensus 342 ~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n 420 (430)
T 3tc9_A 342 NPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN 420 (430)
T ss_dssp CGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred cccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence 33555555556778888884 5543333221 00 0123567899984 5555555556
Q ss_pred CcEEEEEc
Q 001311 628 NGIKILAT 635 (1102)
Q Consensus 628 g~i~iwd~ 635 (1102)
+.|+.++.
T Consensus 421 ~rIr~i~~ 428 (430)
T 3tc9_A 421 RRIRKIGY 428 (430)
T ss_dssp TEEEEEEE
T ss_pred CeEEEEcc
Confidence 77877765
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.0031 Score=71.10 Aligned_cols=253 Identities=12% Similarity=0.110 Sum_probs=138.0
Q ss_pred CCeeEEEEecC--CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311 347 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424 (1102)
Q Consensus 347 ~~v~~v~~spd--g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 424 (1102)
.....|+|+|+ +..|+++-.. +.|+.+|..+++... +........+++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 45789999995 3434444333 899999998776653 222345689999999999544
Q ss_pred EEECC---Ce-EEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ec-CC
Q 001311 425 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE 497 (1102)
Q Consensus 425 s~~~d---~~-v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~-h~ 497 (1102)
+.... .. +...+...+..... .+. .-.....+++.+ ++. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~~--~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTERL--SLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCEE--EEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeeccc--ccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44321 22 33334333221111 121 234456788999 565 5566667788999998878763333 21 12
Q ss_pred CCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc--cCCce--eeeccccCceeEEEE--
Q 001311 498 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS--ADGTR--TYQGFRKRSLGVVQF-- 570 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~--~~~~~~~~~i~~~~~-- 570 (1102)
..-..++| +++++ +.++-...+.|+.++++....... .+..++-. ..|.. ......-.....+++
T Consensus 273 ~~~~~ia~--dpdG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 273 GSNFHIVW--HPTGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp SSCEEEEE--CTTSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCcccEEE--eCCCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 22345776 45556 445555678899988763211100 00001100 00000 000001112344666
Q ss_pred -------cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC----------------CCCcCeEEEc-CCCCEEEEEEC
Q 001311 571 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN 626 (1102)
Q Consensus 571 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~ 626 (1102)
..+++++++-...+.|+.++. +|. +.++.+.+. ......++++ +++.++++-..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 566666666667788999885 554 333332211 1224578888 56665555555
Q ss_pred CCcEEEEEc
Q 001311 627 DNGIKILAT 635 (1102)
Q Consensus 627 dg~i~iwd~ 635 (1102)
++.|+.+++
T Consensus 423 n~rIr~i~~ 431 (433)
T 4hw6_A 423 NHRVRKIAP 431 (433)
T ss_dssp GTEEEEEEE
T ss_pred CCEEEEEec
Confidence 677777765
No 293
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.93 E-value=0.095 Score=64.21 Aligned_cols=496 Identities=11% Similarity=0.046 Sum_probs=246.8
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 426 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 426 (1102)
..|.++.. .+|. |-.|+.+ -+..+|..+++...... . ...-....|.++....+|.+.+ |
T Consensus 103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~-------------~--~~~l~~~~i~~i~~d~~g~lWi-g 162 (758)
T 3ott_A 103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSFDT-------------R--RNGLPNNTIYSIIRTKDNQIYV-G 162 (758)
T ss_dssp SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEECH-------------H--HHCCSCSCEEEEEECTTCCEEE-E
T ss_pred ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEecc-------------C--CCCcCCCeEEEEEEcCCCCEEE-E
Confidence 35777765 4665 4444544 67888987655432100 0 0011234688998888888766 4
Q ss_pred ECCCeEEEEEccCCceeeeEEEeecc----ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311 427 YSRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502 (1102)
Q Consensus 427 ~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~ 502 (1102)
+.+ -+..++..+++... . .+... ...|.++....++..+.+ |.. +-+..+|..+++......-....|.+
T Consensus 163 t~~-Gl~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~i~~d~~~~~lWi--gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~ 236 (758)
T 3ott_A 163 TYN-GLCRYIPSNGKFEG-I-PLPVHSSQSNLFVNSLLEDTTRQCVWI--GTE-GYLFQYFPSTGQIKQTEAFHNNSIKS 236 (758)
T ss_dssp ETT-EEEEEETTTTEEEE-E-CCCCCTTCSSCCEEEEEEETTTTEEEE--EEE-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred eCC-CHhhCccCCCceEE-e-cCCCccccccceeEEEEEECCCCEEEE--EEC-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence 444 47788877654221 1 11111 224888888777663233 333 45888998777543221112234666
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+.. +.+|. |..|+. +-+.+++..+.... .+..... . ..+.....+.++..+.+|+ |-.|+.
T Consensus 237 i~~--d~~g~-lWigT~-~Gl~~~~~~~~~~~-~~~~~~~----------~---~~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 237 LAL--DGNGD-LLAGTD-NGLYVYHNDTTPLQ-HIIHDSR----------N---IQSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EEE--CTTCC-EEEEET-TEEEEECCTTSCCE-EECCCTT----------C---TTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EEE--cCCCC-EEEEeC-CceeEEecCCCcEE-EEEcCCC----------C---cCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 653 45554 444554 45777776553321 1110000 0 0001122355555555555 444445
Q ss_pred CCeEEEEECCCcceEEEEc-----CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc-ceeecccccccccccC
Q 001311 583 DFSIKFWDMDSVQLLTSID-----ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTS 656 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 656 (1102)
.| +.++... .. ...+. .......|.++....+|.+.+. +.+| +..++..++.. .+..+.
T Consensus 298 ~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~---------- 362 (758)
T 3ott_A 298 YG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYR---------- 362 (758)
T ss_dssp SS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEEC----------
T ss_pred Cc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEec----------
Confidence 56 5444322 21 11111 0111234777777777776654 4544 55555433210 000000
Q ss_pred CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311 657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 736 (1102)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 736 (1102)
... ... .
T Consensus 363 --------------------------------------------------------------~~~-----~~~------~ 369 (758)
T 3ott_A 363 --------------------------------------------------------------MGD-----KTY------P 369 (758)
T ss_dssp --------------------------------------------------------------TTC-----SSS------C
T ss_pred --------------------------------------------------------------cCC-----cCC------C
Confidence 000 000 0
Q ss_pred ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311 737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 816 (1102)
Q Consensus 737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 816 (1102)
.....|.++....+|+..+ ++. +-+..|+..+..+. .+.... .........|.++....
T Consensus 370 l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI------------HYNIVD-------NTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp CSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE------------EEEEEC-------CC--CBSSSEEEEEECT
T ss_pred CCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE------------EeecCC-------CcCCCCCceEEEEEEcC
Confidence 0224577888888887444 443 45666665322110 000000 00000234578888888
Q ss_pred CCCeEEEEeCCeEEEEEcCCC-----cee---eeec---C-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 817 NDSYVMSASGGKISLFNMMTF-----KTM---ATFM---P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 817 d~~~las~sdg~I~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
+|++.+....+.|.++|..+. ... ..+. + ....|.++...+ ++++.+.++..+-|..+|..+++...
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE
Confidence 877655444667888886531 111 1111 1 123588898888 77766533444558888987765443
Q ss_pred eecc---ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311 885 KLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 961 (1102)
Q Consensus 885 ~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~ 961 (1102)
.... ....+.++....+|.+.+.. ..| +..++..+.+.... . ..+ .....|.++... +|.+.+++ ++
T Consensus 508 ~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~---~-~~g--l~~~~i~~i~~~-~g~lWi~t-~~ 577 (758)
T 3ott_A 508 LFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSI---S-FGS--FSNNEILSMTCV-KNSIWVST-TN 577 (758)
T ss_dssp ECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SS
T ss_pred ecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEe---c-ccC--CCccceEEEEEC-CCCEEEEC-CC
Confidence 2211 13457788887788776644 455 88888766443211 1 011 112356777664 66554444 55
Q ss_pred eEEEEEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCCCeEEEEEc
Q 001311 962 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
.|..||..+.+.... ... ...+....+. +||. |..|+.+|.+++ +.
T Consensus 578 Gl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~f-~p 624 (758)
T 3ott_A 578 GLWIIDRKTMDARQQ-NMT--NKRFTSLLFDPKEDC-VYLGGADGFGIS-HS 624 (758)
T ss_dssp CEEEEETTTCCEEEC---C--CCCCSEEEEETTTTE-EEEECBSEEEEE-EC
T ss_pred CeEEEcCCCceeEEe-cCC--CCceeeeEEECCCCc-EEEecCCceEEE-Ch
Confidence 688889887765432 111 2233344443 4665 555677775544 44
No 294
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.89 E-value=0.0086 Score=66.81 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=128.7
Q ss_pred CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccCCceee-eE
Q 001311 369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGGDEVR-QH 446 (1102)
Q Consensus 369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~~~~~~-~~ 446 (1102)
..|+..++....... +......+..|+|++.+..|... ...+.|..+++.+..... ..
T Consensus 92 ~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~ 151 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151 (400)
T ss_dssp TEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE
T ss_pred ceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce
Confidence 788888887654332 12234578999999966666555 456889999987632100 01
Q ss_pred EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCeEEE
Q 001311 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKA 525 (1102)
Q Consensus 447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~ 525 (1102)
..+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. ++.+.++-.. .+.|..
T Consensus 152 ~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~ 229 (400)
T 3p5b_L 152 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK 229 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEE
T ss_pred EEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEE
Confidence 112223456788999886554 5666667789999998765544444444455677887543 3334444322 367777
Q ss_pred EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCC
Q 001311 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG 604 (1102)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 604 (1102)
.+++.............. ...+++++++..|+.+. ..+.|..+|++............
T Consensus 230 ~~~dG~~~~~~~~~~l~~---------------------P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~ 288 (400)
T 3p5b_L 230 GGLNGVDIYSLVTENIQW---------------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 288 (400)
T ss_dssp EETTSCSCEEEECSSCSC---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS
T ss_pred EeCCCCccEEEEECCCCc---------------------eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC
Confidence 776643322222222223 33455555545565554 56789999986544433333222
Q ss_pred CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 605 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 605 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
......++++. .+..+.+-...+.|..++..++
T Consensus 289 ~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 289 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 22234466663 3344445556678888887676
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.0035 Score=70.61 Aligned_cols=254 Identities=7% Similarity=0.002 Sum_probs=140.7
Q ss_pred ceEEEEEcc-CCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE----
Q 001311 741 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 814 (1102)
Q Consensus 741 ~i~~~~~s~-~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~---- 814 (1102)
....++|+| +...|+++.. .+.|++.|+ .++.+....-.+.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3444555544 355665554 232222211111112345889999
Q ss_pred ---ecCCCeEEEEe-CC-------eEEEEEcCC-Ccee-----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311 815 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 877 (1102)
Q Consensus 815 ---s~d~~~las~s-dg-------~I~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 877 (1102)
++++++|+++. .+ .|.+++... +... ..+.. -.....++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266666443 2221 12211 1235678899966777777778889999999
Q ss_pred e-------ccee-----------eeee-c-cccccceeEEEecCCCEE-EEEcCCCcEEEEEcCCC--cccceeee-ec-
Q 001311 878 R-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGW--EKQKNRFL-QI- 932 (1102)
Q Consensus 878 ~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~--~~~~~~~~-~~- 932 (1102)
. ++.. ...+ . +....-..|+|+|+|++| ++-.....|+.++.... .......+ -.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 7 4543 1121 1 122345789999999954 44456678888765432 11000111 11
Q ss_pred -CCCCCC------CCCCCc-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCceEeeeeccC------------C---
Q 001311 933 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 981 (1102)
Q Consensus 933 -~~~~~~------~~~~v~-~~~~s-------pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~--- 981 (1102)
..+... .-.... .++.. ++|.+.++ ..+..|+.++ .+|.. .++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCC
Confidence 011100 001223 44444 45666555 4678999998 45543 333211 1
Q ss_pred -------CCCCeeEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEE
Q 001311 982 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRC 1019 (1102)
Q Consensus 982 -------h~~~v~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~ 1019 (1102)
.-.....|+++++ |.++++=.....||.++++......
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1134778999997 7666666667889999887765553
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.84 E-value=0.005 Score=66.19 Aligned_cols=204 Identities=7% Similarity=-0.032 Sum_probs=130.5
Q ss_pred CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311 808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 884 (1102)
.+.+++|++.+..|.... .+.|..+++...... ..+.........+++.+.+++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 356888998766666665 688999998765422 22222234577899997456666666677899999986433222
Q ss_pred eeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311 885 KLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 960 (1102)
Q Consensus 885 ~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d 960 (1102)
.+........+|++.|.+..|..+. ..+.|...++++... ..... .+. .....+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~l----~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIIN--SEI----YWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--EEEEE--CCC----CCccEEEEeccCCEEEEEECCC
Confidence 2223344567899998766666554 256788888775322 11111 111 234789999987777664 56
Q ss_pred CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+.|..+|...... ..+.. +.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~~-~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNR-QAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSC-EEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCce-EEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999875332 22221 2345677888853 4455566667899999998888766654
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.84 E-value=0.00016 Score=87.17 Aligned_cols=207 Identities=6% Similarity=-0.046 Sum_probs=127.3
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 880 (1102)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3467889999887777775 57899999875 22222222222345678888645666666566789999998754
Q ss_pred eeeeeeccccccceeEEEecCCCEEEEEcC-C-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
.....+.........|++.|++.+|+.+.. . +.|.++++.+... ..+.. ... .....++|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~l-----~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence 433333322345678999987665554443 2 6788877765321 11111 111 245789999987766664
Q ss_pred --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
..+.|..+++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433222221122234556666544 455555667899999999998887765
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.82 E-value=0.0074 Score=73.07 Aligned_cols=208 Identities=7% Similarity=-0.041 Sum_probs=130.1
Q ss_pred CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
...+..+++++....|.... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 44578899998766666665 578999998753 223334334456788999984556666666778999999875
Q ss_pred ceeeeeeccccccceeEEEecCCCEEEEEcC-C-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 957 (1102)
Q Consensus 880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~ 957 (1102)
......+........+|++.|.+.+|..+.. + +.|.+.++++.... .++ .... .....|++++.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--~lv---~~~l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV---TENI---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--EEE---eCCC---CCceEEEEecCCCeEEE
Confidence 4433333333445789999998666665543 2 67888888764321 111 1111 24588999987777776
Q ss_pred E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311 958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
+ ....|..+++........+...+.-.....|++..+ +++++-...+.|...|..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 556899999876544333332222345567777433 444555566889888887886655553
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.71 E-value=0.013 Score=63.02 Aligned_cols=210 Identities=11% Similarity=-0.002 Sum_probs=123.0
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE-E
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-G 424 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-a 424 (1102)
...+.+++|++.+..|+.+-...+.|..++...+..... ++...-.....+++.+.+..| +
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence 346789999998777777777788999999876531100 111112356789999855544 5
Q ss_pred EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEe-ecCCCCeEE
Q 001311 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYS 502 (1102)
Q Consensus 425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~ 502 (1102)
+-...+.|.+++.++..... . +.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-..-+.
T Consensus 96 ~d~~~~~I~~~~~dG~~~~~-l--~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 170 (318)
T ss_dssp EETTTTEEEEEETTSCSCEE-E--ECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred EECCCCEEEEEECCCCcEEE-E--EeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence 55567889999987653221 1 2234456789999987664 33333 345788888865 3333333 223345677
Q ss_pred EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 582 (1102)
Q Consensus 503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 582 (1102)
+++++. ++.+.++-+..+.|..+|++................ .+++.. +..+.+-..
T Consensus 171 lavd~~-~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~---------------------glav~~-~~lywtd~~ 227 (318)
T 3sov_A 171 LTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPF---------------------ALTLFE-DILYWTDWS 227 (318)
T ss_dssp EEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEE---------------------EEEEET-TEEEEEETT
T ss_pred EEEecc-CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCce---------------------EEEEeC-CEEEEEecC
Confidence 887543 334445555678898888875332222211112222 233321 223444445
Q ss_pred CCeEEEEECCCcceEEEEc
Q 001311 583 DFSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 583 dg~i~iwd~~~~~~~~~~~ 601 (1102)
.+.|..++..+|+....+.
T Consensus 228 ~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 228 THSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCCceEEEe
Confidence 6788888887776555543
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.61 E-value=0.024 Score=68.58 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=115.7
Q ss_pred CCCeEEEEEccCCCeEE-EEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311 408 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~la-s~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~ 485 (1102)
...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 45778999999655555 4455678999998763210 011123324456778999988865 56666778899999977
Q ss_pred CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311 486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564 (1102)
Q Consensus 486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 564 (1102)
.......+.........|++.+. .+.+.++-.. .+.|...+++.......+..... .
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~---------------------~ 559 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ---------------------W 559 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS---------------------C
T ss_pred CCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC---------------------C
Confidence 54443334444455778887543 2333344322 26777777664332222222222 3
Q ss_pred eeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311 565 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 638 (1102)
Q Consensus 565 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 638 (1102)
...|++++.+..|+.+. ..+.|...++........+..........+|++ ++..|+... ..+.|...+..++
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCC
Confidence 34455555445565554 467889999865544444433222223345555 334555444 4577777777666
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.012 Score=62.56 Aligned_cols=190 Identities=12% Similarity=0.133 Sum_probs=117.6
Q ss_pred CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecC----CC---EEE-EEcC--CCcEEEEEcCCCcccceee
Q 001311 860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRF 929 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~-s~s~--Dg~i~vwd~~~~~~~~~~~ 929 (1102)
..+++.....+-+.+||+ +|+.++.+.. +.+..+..-|+ |+ +++ +.-. +++|.+|+++.....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---- 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---- 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence 345555566788999999 7888888764 55666666553 22 223 3333 578999988532111
Q ss_pred eecCCCC--C--CCCCCCcEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCceEeeeeccCCCCCCeeEEEEcC
Q 001311 930 LQIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSC 993 (1102)
Q Consensus 930 ~~~~~~~--~--~~~~~v~~~~~--spd-g~-~l~~-~~d~~i~iwd~-------~~~~~~~~~~~~~h~~~v~~l~~sp 993 (1102)
+...... . .....+..+++ ++. ++ ++++ ..++.+..|++ .+.+.++.+.. .+.+-.+...+
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd 189 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADD 189 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEET
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcC
Confidence 1111100 0 00135677888 774 54 4555 47899999988 34567777765 45788999999
Q ss_pred CCcEEEEEeCCCeEEEEEcC-----CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEecc
Q 001311 994 DSQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1066 (1102)
Q Consensus 994 d~~~l~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~ 1066 (1102)
....|+.+-+|.-|..++.+ +++++..+. .++-...+.-+.+-..+ ++. +|++.+ .++++.|||..
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 99999999999777777755 455665553 12112224423343344 334 555555 67899999996
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.51 E-value=0.018 Score=60.49 Aligned_cols=204 Identities=11% Similarity=0.073 Sum_probs=124.5
Q ss_pred CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeee-ecC----CCC--CeeEEEE---ecCCCcEEEEEeC------
Q 001311 807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PPP--AATFLAF---HPQDNNIIAIGMD------ 868 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~-~~~----~~~--~i~~l~~---sp~d~~~lasg~~------ 868 (1102)
....+++|.+....+..++ .++|..|+...+..... +.+ ... .+..|.| .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3456789988666666665 89999999976544333 322 111 3578999 68 6888886542
Q ss_pred -------CCcEEEEEee---cceeeeeec--ccc-----------ccceeEEEecCCCEEEEEcCC-CcEEEEEcCCCcc
Q 001311 869 -------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEK 924 (1102)
Q Consensus 869 -------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~ 924 (1102)
+..|..||+. +++.+.... ... .....|+..++|+..++++.- +.|...+.+....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 6789999998 776654432 211 247789999999999988877 7776666654321
Q ss_pred cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE--eeeeccCC--CCCCeeEE-EEcCCCcE-
Q 001311 925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL- 997 (1102)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~--h~~~v~~l-~~spd~~~- 997 (1102)
....+..... ........++++|||+.|++. ..+.|..+|+.+... +..-.... .-.....| ..-.+|+.
T Consensus 172 -~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 172 -STFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp -EEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred -eeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 1111111111 111346799999999988885 588999999884322 11110001 11223333 33347777
Q ss_pred EEEEeCCCeEEEEEcCC
Q 001311 998 VYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 998 l~s~s~Dg~I~vwd~~~ 1014 (1102)
|++.+..+.+.+.+-+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 55555566666655443
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.47 E-value=0.047 Score=59.53 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=125.3
Q ss_pred CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc-eeeeec---CCCCCeeEEEEecC---CCcEEEEEeC---C----CcE
Q 001311 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 872 (1102)
Q Consensus 807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v 872 (1102)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3478999999998776666899999973 444 222221 12346889999993 2444444332 3 567
Q ss_pred EEEEeecc-------ee-eeeecc-ccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCccc-----
Q 001311 873 QIYNVRVD-------EV-KSKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ----- 925 (1102)
Q Consensus 873 ~vwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~----- 925 (1102)
..|+.... +. +..+.. .......|+|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776543 11 111221 11124679999999887775432 34444444331000
Q ss_pred ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE--eCC--eEEEEEcCCce------------------EeeeeccCCC
Q 001311 926 KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLE------------------CVKQWVPRES 982 (1102)
Q Consensus 926 ~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~--~d~--~i~iwd~~~~~------------------~~~~~~~~~h 982 (1102)
..... ..++ .....++|+| +|.+.++- .+. .|.+. ..+. .+..+. ..
T Consensus 188 ~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~ 257 (354)
T 3a9g_A 188 NSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG--SE 257 (354)
T ss_dssp TCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--TC
T ss_pred CCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--CC
Confidence 00111 1122 1457899999 67766662 222 23332 2222 111110 11
Q ss_pred CCCeeEEEEc-------CCCcEEEEEeCCCeEEEEEcCCc-eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311 983 SAPITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus 983 ~~~v~~l~~s-------pd~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
...+..++|. .+|.++++.-..+.|...+++.. +...... ++.. ..-.+..+++.| ||.+.++.
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~ 329 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST 329 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence 3467888883 57777777767788888888753 3321111 1111 113456899998 57766665
Q ss_pred e
Q 001311 1055 L 1055 (1102)
Q Consensus 1055 ~ 1055 (1102)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.42 E-value=0.16 Score=52.70 Aligned_cols=248 Identities=8% Similarity=0.079 Sum_probs=152.1
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430 (1102)
Q Consensus 351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 430 (1102)
+.-.+|..+ ++|.=. ..++.|+|+++.+++....+ ...|..=.|-.+. .|+-.+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CC
Confidence 345588777 455443 58899999999988875332 2366666665444 444443 45
Q ss_pred eEEEEEccCCceeeeEEEeeccc----cCEEEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 431 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 431 ~v~vwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~------~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
.|+-|++++.....+ .+.-|. ..|..-..+++.+. ++++|= -.|.+.+|..+. +..+.++||.+.-
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 699999986443333 233333 35777777888885 333332 246788998554 4557788887655
Q ss_pred EEEeeeecCC-ccEEEEEeC---CCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 501 YSVCPHHKEN-IQFIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 501 ~~v~~~~~~~-~~~l~s~s~---dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
..+.+...+. ..+++.+.. .+.+++-++... ... ..-......+.|.|+.. ..-..++.+++.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCC
Confidence 4443321111 123333332 257888888553 111 11122344555555432 23445667777778
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.++....-|.|++||++++.++..-..... .|...+.+.+..-++.....|.|.-..+...
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 899999999999999999999988775544 4544455445455666668888877776655
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.36 E-value=0.00087 Score=80.73 Aligned_cols=222 Identities=7% Similarity=-0.100 Sum_probs=120.6
Q ss_pred eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419 (1102)
Q Consensus 340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 419 (1102)
..+......+.+|+|++++..|+++-...+.|..+++.+...... ...++.........|++.+.
T Consensus 399 ~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---------------~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 399 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---------------CCCBCCSCC--CCCEECCCS
T ss_pred eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---------------eEEEEeCCCCCcceEEEEee
Confidence 333444567889999998887677666678899999875110000 00011111234567888865
Q ss_pred CC-eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEeecCC
Q 001311 420 GS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHE 497 (1102)
Q Consensus 420 g~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~~~h~ 497 (1102)
+. ++++-...+.|.++++.+..... + +.........|++.|++.. ++++- +..+.|.+.++........+....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~-l--~~~~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKT-L--FREQGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEE-E--CCCSSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEE-E--EeCCCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence 44 44444566889999987654222 1 2222345678899997765 33333 223678888765332222222223
Q ss_pred CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311 498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577 (1102)
Q Consensus 498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l 577 (1102)
...+.|+|.+.. +.+.++-+..+.|..++++.......+..... ......+++..+ ..+
T Consensus 540 ~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-------------------~~~P~glavd~~-~ly 598 (699)
T 1n7d_A 540 QWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-------------------LAHPFSLAVFED-KVF 598 (699)
T ss_dssp SSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSS-------------------CSSCCCCEEETT-EEE
T ss_pred CCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCc-------------------CCCceEeEEECC-EEE
Confidence 345567775432 34555556678898888864322221111000 001111222222 234
Q ss_pred EEEeCCCeEEEEECCCcceEEEEc
Q 001311 578 LAAGDDFSIKFWDMDSVQLLTSID 601 (1102)
Q Consensus 578 ~~~~~dg~i~iwd~~~~~~~~~~~ 601 (1102)
++....+.|..++..+++.+..+.
T Consensus 599 wtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 599 WTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECSTTTCEEEEETTTEEEEECCC
T ss_pred EEeCCCCeEEEEEccCCCceEEee
Confidence 444567889999988887776654
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.34 E-value=0.032 Score=60.93 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=120.2
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce--eeeec---CCCCCeeEEEEecCC----CcEEEEEeCC-----CcEE
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSIQ 873 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v~ 873 (1102)
....++|.|||+++++-.+|.|++++ +++. +..+. ........|+|+| + +.+.++-..+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46799999999976665589999998 3332 22221 1235688999999 5 4444443332 6788
Q ss_pred EEEeecce------eeeeec---cccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCccc------
Q 001311 874 IYNVRVDE------VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ------ 925 (1102)
Q Consensus 874 vwd~~~~~------~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~------ 925 (1102)
.|+...+. .+..+. +.......|+|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 88876431 122232 111123689999999877765432 34554554431000
Q ss_pred ----ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeE------EEEEcCCceE------------------ee
Q 001311 926 ----KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQL------AIFETTKLEC------------------VK 975 (1102)
Q Consensus 926 ----~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-~d~~i------~iwd~~~~~~------------------~~ 975 (1102)
..... ..++ .....++|+| +|.+.++- ....+ +|.-+..+.- +.
T Consensus 189 ~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00000 0111 1346789999 67766662 22221 2333333320 11
Q ss_pred eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEE-EeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311 976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus 976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
.+ .+......++| .+|.++++.-..+.|...+++...... ......++.. .-.+..+++.| ||.++++.
T Consensus 263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 11 12335677888 467776666666778777776443110 0000011111 12456888988 56666655
Q ss_pred e
Q 001311 1055 L 1055 (1102)
Q Consensus 1055 ~ 1055 (1102)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.33 E-value=0.2 Score=51.98 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=149.8
Q ss_pred eeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeec
Q 001311 809 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 887 (1102)
Q Consensus 809 i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~ 887 (1102)
..+..++|..+.+|.-...++.|||+++.+.++...- ...|.--.|-. .+.|+..+ +..|+-|++.. ....+.+.
T Consensus 69 AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred cceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 3456778998888887788999999999888877663 34677777764 55666665 56899999975 34555555
Q ss_pred ccc----ccceeEEEecCCCEEEEEcC-------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC----
Q 001311 888 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---- 952 (1102)
Q Consensus 888 ~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---- 952 (1102)
.|. ..|..-..+++.+|++..|- .|.+.+|+.+.+. -+..+||.. .-..+-.+|
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE 213 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSC
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCC
Confidence 543 45666677889999886543 3678899988743 344455421 111222222
Q ss_pred -cEEEEEe----CCeEEEEEcCCc---e------Eeeee-ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311 953 -IHFLVVH----ETQLAIFETTKL---E------CVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus 953 -~~l~~~~----d~~i~iwd~~~~---~------~~~~~-~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
+.++.+. .+.++|.++... . .+..+ .+..-.+-.-++..|+.-..++..+.-|.|.+||+++|.+
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 2233232 157888887432 1 11111 2222355567788888888888899999999999999999
Q ss_pred EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.+-+.+ ...+. ..+.... ..=++.....|.|.--.+++..
T Consensus 294 i~~nrIS--------~d~iF--~ta~~~~-~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 294 IYMNRIS--------GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEECC--------SSCEE--EEEEEGG-GTEEEEEETTCEEEEEEECTTT
T ss_pred EEEeccC--------CCceE--EecccCC-CCcEEEEcCCCEEEEEEECccc
Confidence 9876621 11133 2233222 2345555588888777776654
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.33 E-value=0.26 Score=53.24 Aligned_cols=248 Identities=8% Similarity=0.077 Sum_probs=152.6
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430 (1102)
Q Consensus 351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 430 (1102)
+.-.+|..+- +|-=. ..++.|+|+++.+++....+ ...|..=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~i-iALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCcE-EEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 4556777773 44433 58999999999988875332 2345555665443 444443 46
Q ss_pred eEEEEEccCCceeeeEEEeeccc----cCEEEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311 431 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 500 (1102)
Q Consensus 431 ~v~vwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~------~d~~i~vWd~~~~~~~~~~~~h~~~v 500 (1102)
.|+-|++.+.....+ .+.-|. ..|..-..+++.+. ++++|= -.|.+.+|..+. +..+.+.||.+.-
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccc-cccchheeeeeee
Confidence 799999976443322 343343 35777778888885 333332 346789999654 4457788887665
Q ss_pred EEEeeeecCC-ccEEEEEeCC---CeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311 501 YSVCPHHKEN-IQFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 575 (1102)
Q Consensus 501 ~~v~~~~~~~-~~~l~s~s~d---g~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~ 575 (1102)
..+.+..... ..+++.+... +.+++-++... ... ..-......+.|.|+.. ..-..++.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 5544321111 1233434332 68888888653 111 11122244445555432 23445677777778
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638 (1102)
Q Consensus 576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 638 (1102)
.++....-|.|++||++++.++..-..... .|...+......-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 899999999999999999999988775544 4544555555556666668888877776655
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.21 E-value=0.092 Score=57.20 Aligned_cols=239 Identities=11% Similarity=0.095 Sum_probs=127.4
Q ss_pred CeeEEEEecCCC-eEEEEeCCeEEEEEcCCCcee---eee----cCCCCCeeEEEEecC---CCcEEEEEeC-------C
Q 001311 808 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 869 (1102)
Q Consensus 808 ~i~~l~~s~d~~-~las~sdg~I~iwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d 869 (1102)
....|+|.|||+ ++++-..|.|++++.. +... ..+ .........++|+|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999999 6655558999999854 3221 111 112345789999993 3444444332 2
Q ss_pred CcEEEEEeecc-------ee-eeeec-----cccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCc
Q 001311 870 SSIQIYNVRVD-------EV-KSKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 923 (1102)
Q Consensus 870 g~v~vwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~ 923 (1102)
..|..|++..+ +. +..+. .|. -..|+|.|||.+.++.+.. |.|.-++.++.-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11121 132 3579999999777765442 345555655320
Q ss_pred cc----------ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE--eCCeEEEEEcCCceEee---------------
Q 001311 924 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECVK--------------- 975 (1102)
Q Consensus 924 ~~----------~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~--~d~~i~iwd~~~~~~~~--------------- 975 (1102)
.. ..... ..++ .....++|+| +|.+.++- .++.=.|.-+..+....
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 1111 1357899999 67666652 22222333222221100
Q ss_pred --------------eeccCCCCCCeeEEEEcC-------CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311 976 --------------QWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus 976 --------------~~~~~~h~~~v~~l~~sp-------d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
.+.. .+...+..++|.. +|.++++.-..+.|...+++.++...... ++.. .
T Consensus 250 ~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~ 321 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----R 321 (353)
T ss_dssp TTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----G
T ss_pred CcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----C
Confidence 0000 1233567788864 57777777677888888888765543322 1111 1
Q ss_pred cccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311 1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus 1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
.-.+..+++.| ||.+.++.. +..=+||.+
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred CCceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence 12466899999 677666433 222355655
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.18 Score=54.82 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=63.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 421 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 421 (1102)
.-...+.++|.|||+ |+++ ..+|.|.+++ +++......+. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence 345678999999998 3544 5569999998 44422110000 12223457889999998 55
Q ss_pred eEEEEEC-C-----CeEEEEEccCCcee--eeEE-Eee---ccccCEEEEEEcCCCCeeEEEEe
Q 001311 422 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 473 (1102)
Q Consensus 422 ~las~~~-d-----~~v~vwd~~~~~~~--~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~ 473 (1102)
+|.++.. + +.|..|+...+... +.+. .+. +.......++|.|||. +.++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5555433 2 67888888754211 1111 122 1111236899999996 45553
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.16 E-value=0.095 Score=55.07 Aligned_cols=163 Identities=10% Similarity=0.098 Sum_probs=105.5
Q ss_pred CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcccccccc--CCCCCCeEEEEE---ccCCCe
Q 001311 348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV--KDPGVSVNRVIW---SPDGSL 422 (1102)
Q Consensus 348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spdg~~ 422 (1102)
-..+++|.+....++++.-..++|..||...+..... .+. + +. ......+..|.| .|++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~-----------~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--G-----------ASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--T-----------TCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--C-----------ccccCCCcceeeEEEEeccCCCCcE
Confidence 3468899987776566655789999999986544321 110 0 00 111124689999 688888
Q ss_pred EEEEEC-------------CCeEEEEEcc---CCceeeeEEEeeccc-----------cCEEEEEEcCCCCeeEEEEecC
Q 001311 423 FGVAYS-------------RHIVQIYSYH---GGDEVRQHLEIDAHV-----------GGVNDIAFSHPNKQLCVITCGD 475 (1102)
Q Consensus 423 las~~~-------------d~~v~vwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~d~~~~~l~s~~~ 475 (1102)
+++... +..|..||+. +++.+.. ..|.... .....++..++|. ..++++.
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~ 156 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL 156 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence 886442 6789999999 7765532 2333222 2488999999999 6788887
Q ss_pred C-CcEEEEeCCCCeeeEEeec------CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 476 D-KTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 476 d-~~i~vWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
. +.|...+.. |+.+..+.. .....+.|+++ ++|..|+.....|.|..+|+..
T Consensus 157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~--pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFD--PHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEE--TTTTEEEEESSSSSEEEEECSS
T ss_pred CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEe--CCCCEEEEEcCCCeEEEEcCCC
Confidence 7 777777744 443333311 11225577764 5556777776699999999874
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.13 E-value=0.067 Score=56.92 Aligned_cols=217 Identities=10% Similarity=0.059 Sum_probs=114.5
Q ss_pred CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeecce-----eeeeeccccccce
Q 001311 827 GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT 894 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~ 894 (1102)
..+.+||..+.+-... +...... .+++ .. ++++++.|+.+ ..+.+||..+.+ .+..+......-.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRY-VASV-SL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS-CEEE-EE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 3588999876543221 2211111 2222 23 67788888765 368999987654 2222222111111
Q ss_pred eEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC-----CeE
Q 001311 895 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL 963 (1102)
Q Consensus 895 ~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d-----~~i 963 (1102)
+...+++.++.|+.++ .+.+||..+.+-.... ...... .-..+ ..-+++.++.+ .+ ..+
T Consensus 108 --~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~-~~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 108 --ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQTAR-----EGAGL-VVASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp --EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSSCC-----BSCEE-EEETTEEEEECCBCSSCBCCCE
T ss_pred --EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCCCc-----ccceE-EEECCEEEEECCCCCCcccceE
Confidence 2223677777776543 5788888775432221 111111 11222 22366666664 32 468
Q ss_pred EEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311 964 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus 964 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
.+||..+.+....-...........+. -++++++.|+.+ ..+.+||+.+.+-...-. ++......
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~---- 247 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCYV---- 247 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC----
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccce----
Confidence 999998876654422111111112222 267788888764 468999999886553321 22221111
Q ss_pred eEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311 1039 LVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus 1039 ~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
++... ++.+++.|+.+ ..|.+||+.+.+
T Consensus 248 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 248 -GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp -EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred -eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22222 46788888776 357788887654
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.082 Score=56.36 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=119.0
Q ss_pred eEEEEe---CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC----CcEEEEEeeccee--eeeecc
Q 001311 820 YVMSAS---GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEV--KSKLKG 888 (1102)
Q Consensus 820 ~las~s---dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~--~~~l~~ 888 (1102)
+++.|+ ...+.+||..+.+-.. .+........++. - ++++++.|+.+ ..+.+||..+.+- +..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444554 2578999988754322 2222122222222 2 67788888765 5788999877543 222221
Q ss_pred ccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e--
Q 001311 889 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-- 959 (1102)
Q Consensus 889 h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-- 959 (1102)
... ...+..-++++++.|+.+ ..+.+||..+.+-.. +..... ...-..++ .-+++.++.+ .
T Consensus 91 ~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~----~r~~~~~~-~~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRD--SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLT----QRCSHGMV-EANGLIYVCGGSLG 160 (306)
T ss_dssp CCB--SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSS----CCBSCEEE-EETTEEEEECCEES
T ss_pred ccc--ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcC----CcceeEEE-EECCEEEEECCCCC
Confidence 111 112222367777888765 458899988754321 211111 01112222 2366666663 2
Q ss_pred -------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCccc
Q 001311 960 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1027 (1102)
Q Consensus 960 -------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~ 1027 (1102)
-..+.+||..+.+....-.... ...-.+++.. ++++++.|+.+ ..+.+||..+.+-... . .+
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PM 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CC
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CC
Confidence 3458899998886544322111 1111222222 67777777654 3588999988765432 1 12
Q ss_pred CCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311 1028 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus 1028 ~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
+...... ++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 235 p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 PWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2221111 22222 46788888865 467888887765
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.09 E-value=0.47 Score=51.48 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCe
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 422 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 422 (1102)
-...+.|+|.|||+ |+++ ..+|.|.+++ .+++ .....+. +..........|+|+|+ +.+
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 45679999999998 3444 5569999997 3454 1110000 11222356889999998 555
Q ss_pred EEEEEC----C----CeEEEEEccCC--ce--eeeE-EEee-ccccCEEEEEEcCCCCeeEEEEe
Q 001311 423 FGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC 473 (1102)
Q Consensus 423 las~~~----d----~~v~vwd~~~~--~~--~~~~-~~l~-~h~~~V~~v~~s~d~~~~~l~s~ 473 (1102)
|.++.. + ..|..|+...+ .. .+.+ ..+. +.......|+|.|||. ++++.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 554432 3 56777887654 11 1111 1122 1111346799999997 45553
No 315
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.05 E-value=0.5 Score=51.15 Aligned_cols=235 Identities=14% Similarity=0.133 Sum_probs=151.4
Q ss_pred eeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeec
Q 001311 809 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 887 (1102)
Q Consensus 809 i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~ 887 (1102)
..+..++|..+.+|.-...++.|||+++.+.++...- ...|.--.|-. .+.|+..+ +..|+-|++.. ....+.+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFd 143 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (494)
T ss_dssp CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhee
Confidence 3467788998888887788999999999888877663 33577777764 45666655 56899999974 34555565
Q ss_pred ccc----ccceeEEEecCCCEEEEEcC-------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC----
Q 001311 888 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---- 952 (1102)
Q Consensus 888 ~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---- 952 (1102)
-|. ..|..-..++|.+|++..|- .|.+.+|+.+.+. -+..+||.. .-..+-.+|
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~ 212 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE 212 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSE
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCC
Confidence 553 45666677889999885542 3678899988743 344455421 112222222
Q ss_pred -cEEEEEe----CCeEEEEEcCCc---------eEeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311 953 -IHFLVVH----ETQLAIFETTKL---------ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus 953 -~~l~~~~----d~~i~iwd~~~~---------~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
..++.+. .+.++|.++... +.+..+. +..-.+-.-++..|+.-..++..+.-|.|.+||+++|.+
T Consensus 213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp EEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 2233232 268888888432 1111111 222355567888899888899999999999999999999
Q ss_pred EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
+.+-+. . ...+. ..+.... ..=++.....|.|.--.+++..
T Consensus 293 i~~nrI----s----~~~iF--~t~~~~~-~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 293 IYMNRI----S----GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEC----C----SSCEE--EEEEETT-TTEEEEEETTCEEEEEEECTTT
T ss_pred eeeecc----c----CCceE--EecccCC-CCcEEEEccCceEEEEEEcccc
Confidence 987662 1 11133 2333332 3345555688888777776654
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.02 E-value=0.11 Score=55.08 Aligned_cols=229 Identities=12% Similarity=0.114 Sum_probs=119.3
Q ss_pred CCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeeccee--e
Q 001311 818 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV--K 883 (1102)
Q Consensus 818 ~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~~--~ 883 (1102)
+.+++.|+ + ..+.+||..+.+-... +....... +++. - ++++++.|+.++ .+.+||..+.+- +
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 34455554 2 4588899876543221 12111111 2222 2 677888887553 588899876542 2
Q ss_pred eeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 884 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
..+......-..+ .-+++.++.|+.++ .+.+||+.+.+-. .+...... ..-..++. -+++.++.+
T Consensus 93 ~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~----r~~~~~~~-~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTR----RSSVGVGV-VGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEE--EETTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSSC----CBSCEEEE-ETTEEEEEC
T ss_pred CCCCccccceEEE--EECCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCCc----ccCceEEE-ECCEEEEEe
Confidence 2222211111122 23677778887653 4778888775432 22111110 11122222 356666653
Q ss_pred -e-------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEeCCCc
Q 001311 959 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus 959 -~-------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
. -..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++ .+.+||..+++-...-.
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--- 237 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD--- 237 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence 2 2458899998876554322111 11112222 22678888887653 68999998876543221
Q ss_pred ccCCCCCCCcccceEEEecCCCCCEEEEEecCC-----cEEEEeccCCCccccc
Q 001311 1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~ 1074 (1102)
++...... ++... ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 -~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 -MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 22211111 22222 467888888764 48888887765 654
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.91 E-value=0.11 Score=55.04 Aligned_cols=188 Identities=9% Similarity=0.030 Sum_probs=100.5
Q ss_pred cCCCeEEEEe-C-----CeEEEEEcCCCc-----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeec
Q 001311 816 KNDSYVMSAS-G-----GKISLFNMMTFK-----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 879 (1102)
Q Consensus 816 ~d~~~las~s-d-----g~I~iwd~~~~~-----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~ 879 (1102)
.+++.++.|+ + ..+.+||..+.+ .+..+........ ++. . ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~-~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG-ATT-L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE-EEE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee-EEE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 4666777665 3 358999988755 2222222112222 222 2 677888887543 688899876
Q ss_pred ce--eeeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 880 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 880 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
.+ .+..+.... ....+...+++.++.|+.+ ..+.+||+.+.+-.. +..... ...-..+ ..-++
T Consensus 138 ~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~----~r~~~~~-~~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAR--EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMAT----KRSGAGV-ALLND 207 (301)
T ss_dssp TEEEEEEECSSCC--BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---ECCCSS----CCBSCEE-EEETT
T ss_pred CeEEECCCCCCCc--ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe---CCCCCc----ccccceE-EEECC
Confidence 54 222222111 1112222377777777765 458899988754322 211111 0111222 22356
Q ss_pred cEEEEE-e-----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311 953 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus 953 ~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
+.++.+ . ...+.+||+.+.+....-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666664 3 2479999999877654422211111122222 377888888765 45888898876543
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.81 E-value=0.31 Score=52.08 Aligned_cols=224 Identities=11% Similarity=0.104 Sum_probs=116.6
Q ss_pred CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeC-----C------CcEEEEEeeccee--eeeeccccc
Q 001311 826 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDEV--KSKLKGHSK 891 (1102)
Q Consensus 826 dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~v~vwd~~~~~~--~~~l~~h~~ 891 (1102)
...+.+||..+.+-.. .+..........+... ++++++.|+. . ..+.+||..+++- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999988765332 2222223333333444 7788888874 1 1277888876542 222221111
Q ss_pred cceeEEEecCCCEEEEEcCC--------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e-C-
Q 001311 892 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 960 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-d- 960 (1102)
.-. ++. -+++.++.|+.+ ..+.+||..+.+-. .+..... . .....+..-+++.++.+ . +
T Consensus 91 ~~~-~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~----~-r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFG-LGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY----V-VYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCE-EEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS----C-CBSCEEEEETTEEEEECCBCTT
T ss_pred cee-EEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC----c-ccceeEEEECCEEEEEeCCCCC
Confidence 111 222 266777777742 35888998875422 1111111 0 11222233566666664 3 2
Q ss_pred ----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEeCCCcccCCCC
Q 001311 961 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus 961 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 469999998876544322111 11112222 22778888887654 58899998876543321 22221
Q ss_pred CCCcccceEEEecCCCCCEEEEEecCC--------------cEEEEeccCCCcccccC
Q 001311 1032 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1075 (1102)
Q Consensus 1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~~~~~~~ 1075 (1102)
... ++... ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 111 22222 467888888643 36677777654 5543
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.79 E-value=0.2 Score=53.35 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=118.4
Q ss_pred cCCCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeC----C-----CcEEEEEeec
Q 001311 816 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 879 (1102)
Q Consensus 816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~ 879 (1102)
-++.+++.|+ + ..+.+||..+.+-... +....... +++. - ++++++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3455566554 2 4688999876543222 11111111 2222 2 5778888776 2 3688899876
Q ss_pred cee--eeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 880 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 880 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
.+- +..+......-..+. -+++.++.|+.+ ..+.+||..+.+-.. +..... ...-..++. -++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~~-~~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT----RRIGVGVAV-LNR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS----CCBSCEEEE-ETT
T ss_pred CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc----cccceEEEE-ECC
Confidence 542 222221111112222 367777777644 358889988754321 111110 011122222 256
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEe
Q 001311 953 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus 953 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1021 (1102)
+.++.+ .+ ..+.+||..+.+....-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666664 32 4689999988765543221111111222222 77788888765 45999999887654321
Q ss_pred CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus 1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
. ++...... ++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 248 ~----~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 P----MKHRRSAL-----GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----CSSCCBSC-----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C----CCCCccce-----EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 22221111 22222 46788888765 357788887755
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.79 E-value=0.08 Score=57.25 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=80.7
Q ss_pred EEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee----
Q 001311 811 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---- 882 (1102)
Q Consensus 811 ~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---- 882 (1102)
......+|..++.+.++.||.-++.....-+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345667888999999999999998754444444432 23688999999 999999886 55899988873210
Q ss_pred --------eeeecc------ccccceeEEEecC---CCEEEEEcCCCcEEEEEcCC
Q 001311 883 --------KSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 883 --------~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
.+.+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 011111 2467999999985 56899999999999999986
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.65 E-value=0.39 Score=54.09 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=62.2
Q ss_pred CeeEEEEecCCCeEEEEeC-CeEEEEEcCCCcee--eeecC------CCCCeeEEEEecC---CCcEEEEEeC-------
Q 001311 808 AVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------- 868 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sd-g~I~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------- 868 (1102)
....|+|.|||+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 47988886555432 22221 2345779999994 3444443332
Q ss_pred -----CCcEEEEEeecc-------eee-eeecc-ccccceeEEEecCCCEEEEEcC
Q 001311 869 -----DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 910 (1102)
Q Consensus 869 -----dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~ 910 (1102)
...|.-|++..+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665431 111 11221 1123578999999998887664
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.58 E-value=0.22 Score=53.03 Aligned_cols=188 Identities=11% Similarity=0.052 Sum_probs=100.9
Q ss_pred cCCCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEEEEeeccee
Q 001311 816 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV 882 (1102)
Q Consensus 816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~~ 882 (1102)
-+++.++.|+ + ..+.+||..+.+-... +........++. - ++++++.|+.+ ..+.+||..+.+-
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 3666667665 3 5688999887543322 221111222222 2 67788888765 4688999887542
Q ss_pred --eeeeccccccceeEEEecCCCEEEEEcC---------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311 883 --KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 951 (1102)
Q Consensus 883 --~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 951 (1102)
+..+..... ...+..-++++++.|+. -..+.+||+.+.+-. .+..... ...-..++. -+
T Consensus 131 ~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~~~~~-~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRC--SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIE----ARKNHGLVF-VK 200 (306)
T ss_dssp EEECCCSSCCB--SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSS----CCBSCEEEE-ET
T ss_pred EeCCCCcCCcc--eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccc----hhhcceEEE-EC
Confidence 222221111 11122236677777764 344889998875432 2211111 011122222 26
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311 952 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus 952 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
++.++.+ .+ ..+.+||..+.+....-...........+.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6666663 22 4689999988765443221111112222333 77888888854 46899999887544
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.35 E-value=1.4 Score=47.05 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=59.3
Q ss_pred eeEEEEecCCCeEEEEe--CCeEEEEEcCCCce------------------eeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311 809 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------------MATFMPPPPAATFLAFHPQDNNIIAIGMD 868 (1102)
Q Consensus 809 i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 868 (1102)
...++|+|+|++.++-. ++.=.|--+..+.. +..+..+......++|. ++.++.....
T Consensus 204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~ 281 (347)
T 3das_A 204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLR 281 (347)
T ss_dssp CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEEST
T ss_pred cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeecccc
Confidence 56789999887666543 33222222222111 12222222356788887 4667776667
Q ss_pred CCcEEEEEeeccee----eeeeccccccceeEEEecCCCEEEEEc
Q 001311 869 DSSIQIYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSG 909 (1102)
Q Consensus 869 dg~v~vwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s 909 (1102)
.+.|....+..... ...+.+...++..|+..|||.++++.+
T Consensus 282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77787777765432 223445557899999999998777654
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.32 E-value=0.47 Score=51.69 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=111.7
Q ss_pred CCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeC-C---------CcEEEEEeecc
Q 001311 817 NDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRVD 880 (1102)
Q Consensus 817 d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~~ 880 (1102)
++++++.|+ ...+.++|..+ ++.+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 677777776 46799999864 22222222111111222222 5778888776 2 46889998775
Q ss_pred ee--eeeeccccccceeEEEecCCCEEEEEcCC---------------------------------------CcEEEEEc
Q 001311 881 EV--KSKLKGHSKRITGLAFSHALNVLVSSGAD---------------------------------------SQLCVWSS 919 (1102)
Q Consensus 881 ~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~i~vwd~ 919 (1102)
+- +..+. ........+...++++++.|+.+ ..+.+||.
T Consensus 97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 42 22222 11122222233578888888865 46888998
Q ss_pred CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e------CCeEEEEEc--CCceEeeeeccCCCCCCeeEEE
Q 001311 920 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H------ETQLAIFET--TKLECVKQWVPRESSAPITHAT 990 (1102)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~------d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~ 990 (1102)
.+.+-..... ..... ..-..++. -+++.++.+ . ...+.+||+ .+.+....-............+
T Consensus 176 ~~~~W~~~~~--~p~~~----~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 176 STQQWSYAGE--SPWYG----TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp TTTEEEEEEE--CSSCC----CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred CCCcEEECCC--CCCCC----cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 8754322211 11110 01022332 355655553 2 235777876 5544433211111111112222
Q ss_pred EcCCCcEEEEEeCC----------------------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311 991 FSCDSQLVYACFLD----------------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus 991 ~spd~~~l~s~s~D----------------------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
...++++++.|+.+ ..+.+||+.+.+-...-. ++.....+ ++... ++
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~-----~~~~~--~~ 317 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYG-----VSLPW--NN 317 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSS-----EEEEE--TT
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccc-----eeEEe--CC
Confidence 33467777777732 257889988765433211 22221111 22222 46
Q ss_pred CEEEEEecCC------cEEEEeccCCC
Q 001311 1049 NEFALGLSDG------GVHVFEPLESE 1069 (1102)
Q Consensus 1049 ~~l~s~~~Dg------~v~vW~~~~~~ 1069 (1102)
.+++.|+.++ .|.+.++.+++
T Consensus 318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 318 SLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 8888898764 34445666655
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.25 E-value=0.99 Score=48.91 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCeE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF 423 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 423 (1102)
...+.|+|.|||++|++ +...|.|++++.. ++... .+. + .. .+.....+....|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEE
Confidence 46789999999995344 4567999999853 32210 000 0 00 012223456789999996 4555
Q ss_pred EEE-EC-------CCeEEEEEccCCc-eeeeEEE-eec------cccCEEEEEEcCCCCeeEEEEe
Q 001311 424 GVA-YS-------RHIVQIYSYHGGD-EVRQHLE-IDA------HVGGVNDIAFSHPNKQLCVITC 473 (1102)
Q Consensus 424 as~-~~-------d~~v~vwd~~~~~-~~~~~~~-l~~------h~~~V~~v~~s~d~~~~~l~s~ 473 (1102)
..+ .. ...|..|++..+. .+..... +.+ ....-..|+|.|||. +++..|
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 148 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG 148 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence 444 22 2356667765431 1111111 111 111235799999996 244433
No 326
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=96.25 E-value=0.0037 Score=58.10 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=63.7
Q ss_pred hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCc----hhHH---HHHH
Q 001311 60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDT----KSAR---SIML 132 (1102)
Q Consensus 60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~----~~~R---~~l~ 132 (1102)
++|.|+.|.|||||..|..++|..+|.+.-..+...+.+.+++|+.+....++.+++....++.. ..+| ..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999999999999986666666679999999999999888888887777662 2233 5566
Q ss_pred HHHHh
Q 001311 133 VELKK 137 (1102)
Q Consensus 133 ~~l~~ 137 (1102)
..|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66555
No 327
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=96.22 E-value=0.0012 Score=59.74 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=60.4
Q ss_pred hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----c---hhHHHHHH
Q 001311 60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----T---KSARSIML 132 (1102)
Q Consensus 60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~---~~~R~~l~ 132 (1102)
++|+|+.|.||||+..|..++|..+|.+.-..+... .+.+++|+.+....++.+++....++. . +.+=..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999999876666666 999999999998888887777666654 1 23335666
Q ss_pred HHHHh
Q 001311 133 VELKK 137 (1102)
Q Consensus 133 ~~l~~ 137 (1102)
..|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.11 E-value=0.06 Score=58.23 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe-----e--eeeeeccCCCCccccccccCCCCCCeEEEEEcc-
Q 001311 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----R--NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 418 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 418 (1102)
+.|..+..||+|++|.+.|. ..|.|-.+..+..... . ..+.|.+.. .......+|..+-|+|
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 47889999999997544443 6888888874432211 0 011121110 1112467899999999
Q ss_pred --CCCeEEEEECCCeEEEEEccCCceeee-------EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311 419 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 481 (1102)
Q Consensus 419 --dg~~las~~~d~~v~vwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v 481 (1102)
.+..|++-..|+.|++||+........ .+.+......|.+++|..++-.+++++....|.|+-
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 577899999999999999986332111 011112235677888887666555555555555443
No 329
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.10 E-value=0.54 Score=49.72 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=98.8
Q ss_pred CCCeEEEEe-C-----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeeccee-
Q 001311 817 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV- 882 (1102)
Q Consensus 817 d~~~las~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~~- 882 (1102)
+++.++.|+ + ..+.+||..+.+-... +........ ++. - ++++++.|+.++ .+.+||..+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG-AAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceE-EEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 666777765 3 3588999876543222 221111222 222 2 577888887664 577888776542
Q ss_pred -eeeeccccccceeEEEecCCCEEEEEcCC-------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311 883 -KSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 954 (1102)
Q Consensus 883 -~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 954 (1102)
+..+......- +++ .-+++.++.|+.+ ..+.+||+.+.+-.. +..... ...-..++ .-+++.
T Consensus 138 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~-~~~~~i 207 (302)
T 2xn4_A 138 HVAPMNTRRSSV-GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMST----RRSGAGVG-VLNNLL 207 (302)
T ss_dssp EECCCSSCCBSC-EEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSS----CCBSCEEE-EETTEE
T ss_pred ecCCCCCcccCc-eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCcc----ccccccEE-EECCEE
Confidence 22222111111 122 2366777777643 348889988754322 211111 01112222 235666
Q ss_pred EEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeE
Q 001311 955 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1018 (1102)
Q Consensus 955 l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~ 1018 (1102)
++.+ .+ ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++ .|.+||..+.+-.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 6664 32 479999998876554322111 11111222 23778888887664 4899999887654
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.05 E-value=0.42 Score=51.44 Aligned_cols=188 Identities=10% Similarity=0.016 Sum_probs=96.3
Q ss_pred CCeEEEEEccCCCeEEEEE------------CCCeEEEEEccCCce-eeeEEEeec-----cccCEEEEEEcC--CCCee
Q 001311 409 VSVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDE-VRQHLEIDA-----HVGGVNDIAFSH--PNKQL 468 (1102)
Q Consensus 409 ~~V~~l~~spdg~~las~~------------~d~~v~vwd~~~~~~-~~~~~~l~~-----h~~~V~~v~~s~--d~~~~ 468 (1102)
.....++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ ..-....|.+.+ ++...
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3456677888886666552 689999999984321 2222 2333 234567777765 45421
Q ss_pred EEEEecC--CCcEEEEeCCCCe----eeEEeecC-CCCeEEEeeeecCCccEEEEEeC---C--------------CeEE
Q 001311 469 CVITCGD--DKTIKVWDATNGA----KQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK 524 (1102)
Q Consensus 469 ~l~s~~~--d~~i~vWd~~~~~----~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~s~---d--------------g~i~ 524 (1102)
+++.-.. +.+|.+|++..+. .+..+.+. -...+.+.+. ++|.+.++... | |.|.
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 3333222 5678888776532 12334432 2345666653 44455554431 1 2222
Q ss_pred EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCC-cceE--EEE
Q 001311 525 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQLL--TSI 600 (1102)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~ 600 (1102)
.+|. ++ ...+ ...-..-..++++|+++.++.+. ..+.|+.|++.. ++.. ..+
T Consensus 207 r~d~--~~-~~~~---------------------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 207 YYSP--ND-VRVV---------------------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp EECT--TC-CEEE---------------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred EEEC--Ce-EEEe---------------------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 2221 11 1000 01112344567777776666654 578899999863 3321 223
Q ss_pred cCCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001311 601 DADGGLPASPRIRFNK-DGCLLAVSTN 626 (1102)
Q Consensus 601 ~~~~~~~~v~~~~~s~-~~~~l~~~~~ 626 (1102)
.. ....-.+++.+ +|.+.+++..
T Consensus 263 ~~---~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 263 SF---DTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp EC---SSEEEEEEECTTTCCEEEEEES
T ss_pred eC---CCCCceEEEeCCCCcEEEEecC
Confidence 21 12345677887 4777665543
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.00 E-value=0.73 Score=50.13 Aligned_cols=59 Identities=10% Similarity=-0.053 Sum_probs=31.8
Q ss_pred eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC------eEEEEEcCCceeEEEeC
Q 001311 962 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus 962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~ 1022 (1102)
.+.+||+.+.+....-........ ..+..-++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 578999887654332221111111 222334788888888653 46667999888876554
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.019 Score=61.20 Aligned_cols=199 Identities=8% Similarity=0.033 Sum_probs=107.4
Q ss_pred cEEEEEeCCCcEEEEEeecceeeeeeccc-cccceeEE---EecCCCEEEEE-cCCCcEEEEEcCCCcccceeeeecCCC
Q 001311 861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 935 (1102)
Q Consensus 861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~---~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~ 935 (1102)
.++++++.||.|+-+|..+|+.+-++... ..++.... ...++..++.. +.||.|..++..+|...- .......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence 47888999999999999999988887643 12222111 00123333333 589999999988764321 1111110
Q ss_pred CCCCCCCCcEEEE------------ccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCC-----eeEEEEc-----C
Q 001311 936 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 993 (1102)
Q Consensus 936 ~~~~~~~v~~~~~------------spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~l~~s-----p 993 (1102)
- ...-+.. +.+|..++.+.++.+...|+.+|+.+..+....-... ..|.... .
T Consensus 89 v-----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 89 V-----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp H-----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred e-----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 0 0011221 2445544457999999999999999988864321111 1111111 1
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001311 994 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus 994 d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1072 (1102)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. .....+. |+.+ +.++.||.|...|..++...|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677777777777766 4554 22222111111110 00000 0000112 3445 557889999999999998888
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.93 E-value=0.71 Score=49.15 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=98.8
Q ss_pred EEecCCCeEEEEe-----C-------CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC--------C
Q 001311 813 ALSKNDSYVMSAS-----G-------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD--------S 870 (1102)
Q Consensus 813 ~~s~d~~~las~s-----d-------g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d--------g 870 (1102)
+...+++.++.|+ + ..+.+||..+.+-.. .+....... +++.. ++++++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 3345667666665 1 127788887654321 121111111 22222 56777877743 4
Q ss_pred cEEEEEeecce--eeeeeccccccceeEEEecCCCEEEEEcC-C-----CcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311 871 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 942 (1102)
Q Consensus 871 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1102)
.+.+||..+.+ .+..+.... ....+...+++.++.|+. + ..+.+||..+.+-.. +..... +..
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~ 188 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVV--YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQT----ARS 188 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSS----CCB
T ss_pred eEEEECCCCCcEeECCCCCCcc--cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCC----chh
Confidence 68899987754 222222111 112222346777777776 2 358899988754221 111110 111
Q ss_pred CcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----------
Q 001311 943 DTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1005 (1102)
Q Consensus 943 v~~~~~spdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----------- 1005 (1102)
-..++ .-+++.++.+ .++ .+.+||..+.+....-.... ...-.+++ .-++++++.|+.++
T Consensus 189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLV-SLVGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEE
T ss_pred ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEE-EECCEEEEECCccccCcCCcccccc
Confidence 12222 2366666664 332 68899998876554422111 11112222 22678888877642
Q ss_pred ---eEEEEEcCCceeEE
Q 001311 1006 ---TVCVFSAANLKLRC 1019 (1102)
Q Consensus 1006 ---~I~vwd~~~~~~~~ 1019 (1102)
.|.+||+.+.+-..
T Consensus 266 ~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 266 ELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEEEEEETTTTEEEE
T ss_pred ccCcEEEecCCCChhhh
Confidence 37788988876543
No 334
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.91 E-value=1.5 Score=46.72 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=112.4
Q ss_pred CeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeC----CC-------cEEEEEeecceee--eeecccccc
Q 001311 827 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEVK--SKLKGHSKR 892 (1102)
Q Consensus 827 g~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~~~--~~l~~h~~~ 892 (1102)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 358889988765433 1221122222333344 7788888883 12 1778887765432 222211111
Q ss_pred ceeEEEecCCCEEEEEcCC-------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e-C---
Q 001311 893 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 960 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-d--- 960 (1102)
-. ++. -+++.++.|+.+ ..+.+||..+.+-. .+..... ...-..++. .+++.++.+ . +
T Consensus 103 ~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FG-LGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---EVKNLPI----KVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CE-EEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE---EECCCSS----CEESCEEEE-ETTEEEEECCEESSSC
T ss_pred cc-eEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEe---ECCCCCC----cccccEEEE-ECCEEEEEcCCCCCCC
Confidence 11 222 267777777754 24778888765422 1211110 011122222 566666664 2 2
Q ss_pred --CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311 961 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus 961 --~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
..+.+||..+.+....-.... ...-.+++. -++++++.|+.+ ..+.+||+.+.+-... . .++.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCcccc
Confidence 369999998876544322111 111122222 267777777654 3577899888764432 1 12222111
Q ss_pred CcccceEEEecCCCCCEEEEEecC--------------CcEEEEeccCCCccccc
Q 001311 1034 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1034 ~~v~~~~v~f~p~d~~~l~s~~~D--------------g~v~vW~~~~~~~~~~~ 1074 (1102)
+ ++... ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 292 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG 292 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence 1 22222 46788887764 357778887755 543
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.85 E-value=0.41 Score=59.90 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=139.8
Q ss_pred eEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeecc
Q 001311 810 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG 888 (1102)
Q Consensus 810 ~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~ 888 (1102)
.+..++|..+.+|.-...++.|||+.+.+.++...- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+.+.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 445677888888877788999999998777766553 34566667764 45666555 56899999964 244445554
Q ss_pred c----cccceeEEEecCCCEEEEEc-------CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE---ccCCcE
Q 001311 889 H----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQIH 954 (1102)
Q Consensus 889 h----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---spdg~~ 954 (1102)
| ...|..-..+++.+|++..| -.|.+.+|+++.+. -+..+||...- ..+.+ .+....
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F---~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASF---AQFKMEGNAEESTL 215 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhh---heeccCCCCCCceE
Confidence 4 35677777788999988554 24788999887643 33444443210 11111 111222
Q ss_pred EEEEe----CCeEEEEEcCCc---e------Eeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311 955 FLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus 955 l~~~~----d~~i~iwd~~~~---~------~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
++.+. .+.++|-++... . .+..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 22232 267888887432 1 111111 111234456777788878888888999999999999998865
Q ss_pred eCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311 1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus 1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
-+. . ...|. ..+.....+ =++.....|.|.--.+.+..
T Consensus 296 ~ri----s----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 296 NRI----S----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ccc----c----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence 441 1 11133 222222122 23344467766666665544
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.75 E-value=0.82 Score=48.47 Aligned_cols=187 Identities=11% Similarity=0.048 Sum_probs=97.8
Q ss_pred CCCeEEEEeC----------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001311 817 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 879 (1102)
Q Consensus 817 d~~~las~sd----------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 879 (1102)
++++++.|+. ..+.+||..+.+-... +........++.+ ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence 6666666542 3588999876543221 2211112222222 57788887644 3688899876
Q ss_pred cee--eeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 880 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 880 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
.+- +..+......-.++. -++++++.|+.+ ..+.+||+.+.+-.. +..... ...-..++.. ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~~~-~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNT----IRSGAGVCVL-HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSS----CCBSCEEEEE-TT
T ss_pred CeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCC----ccccceEEEE-CC
Confidence 542 222221111112222 267777777755 458899987754321 111111 1111222222 66
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311 953 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus 953 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
+.++.+ .+ ..+.+||+.+.+....-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 579999998877654322111 111122222 267888888754 35788898877544
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.70 E-value=2.2 Score=47.72 Aligned_cols=195 Identities=12% Similarity=0.139 Sum_probs=114.8
Q ss_pred cCCCeEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001311 816 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 874 (1102)
Q Consensus 816 ~d~~~las~s--dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v 874 (1102)
.||+||..-. +..|...++...++-+.+.- ....+..+.|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5889999987 57788889988887665543 34567788876 5 5667766653 2221 11
Q ss_pred EE---eecceeeeeeccccccceeEEEecCCCEEEEEcCCC---------------cEEEEEcCCC-------ccc--c-
Q 001311 875 YN---VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQ--K- 926 (1102)
Q Consensus 875 wd---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~i~vwd~~~~-------~~~--~- 926 (1102)
|. ..+.+...++.- .+..-.+...++|++.++.+.+. .+.++|+..- +.. .
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 11 111111111110 12233345567788887766532 2556654321 110 0
Q ss_pred --eeeeecCC----CCC-----CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceE-------------eeeeccC
Q 001311 927 --NRFLQIPT----GRT-----PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 980 (1102)
Q Consensus 927 --~~~~~~~~----~~~-----~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~-------------~~~~~~~ 980 (1102)
..++.... +.. +.+.+...+.++|||++++++ .+.++.++|.+.... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 11111111 000 112455789999999999995 577999999875211 12222
Q ss_pred CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 981 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 981 ~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
-.......+|.++|.-..+--.|..|..|++...
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456789999999955566668999999999764
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.47 E-value=0.1 Score=50.88 Aligned_cols=146 Identities=13% Similarity=0.016 Sum_probs=83.1
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCC--------eeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 879 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 879 (1102)
.+..++|+|+|.+.++ .+|.++-.+..+.....-+. .... -.++.|.| ++.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5779999999998877 88887777664422211111 0112 47899999 8888887 569888777533
Q ss_pred ceee------eee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCCCCCCCCCcEEEEcc
Q 001311 880 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 880 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
...- ..+ .+-=..+..|.|.|+|.+.+.. |+.+.-+...++...... ...+-.+.. ..-+.+.|++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~ 191 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSS 191 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECT
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECC
Confidence 1111 011 1111457889999999888777 776543332221110000 000000000 1224567889
Q ss_pred CCcEEEEEeCCeEE
Q 001311 951 DQIHFLVVHETQLA 964 (1102)
Q Consensus 951 dg~~l~~~~d~~i~ 964 (1102)
+|...++. ++.++
T Consensus 192 ~G~l~~v~-~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ-GGKFY 204 (236)
T ss_dssp TSCEEEEE-TTEEE
T ss_pred CCcEEEEe-CCeEE
Confidence 98887777 66443
No 339
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=95.42 E-value=0.0037 Score=57.13 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=53.2
Q ss_pred hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC
Q 001311 60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 123 (1102)
Q Consensus 60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 123 (1102)
++|.|+.|.||||+..| .++|..+|.+.-..+...+.+.+++|+.+....++.+++....++.
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~ 97 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQS 97 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHh
Confidence 99999999999999999 9999999987655555557888999999888888887777666655
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.42 E-value=1.2 Score=47.53 Aligned_cols=192 Identities=8% Similarity=-0.002 Sum_probs=97.2
Q ss_pred EecCCCeEEEEe-C----C-------eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC-------CcE
Q 001311 814 LSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSI 872 (1102)
Q Consensus 814 ~s~d~~~las~s-d----g-------~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~v 872 (1102)
...+++.++.|+ . + .+.+||..+.+-.. .+....... +++.. ++++++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccceE
Confidence 345677777665 1 1 17778877644322 122111122 22222 56788888764 357
Q ss_pred EEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311 873 QIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 944 (1102)
Q Consensus 873 ~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 944 (1102)
.+||..+.+- +..+...... ..+...++++++.|+.+ ..+.+||+.+.+-. .+..... ...-.
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~ 200 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYG--HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKT----PRSMF 200 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEES--CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSS----CCBSC
T ss_pred EEEeCCCCCEeECCCCCCcccc--cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCC----Ccccc
Confidence 8888876542 2222211111 11222467777777642 35889998875432 2211111 01112
Q ss_pred EEEEccCCcEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--------------
Q 001311 945 RVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-------------- 1004 (1102)
Q Consensus 945 ~~~~spdg~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-------------- 1004 (1102)
.++. -+++.++.+ .+ ..+.+||+.+.+....-........ .+++ .-++++++.|+.+
T Consensus 201 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 201 GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCBC
T ss_pred eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceecccee
Confidence 2322 356666664 22 3578999988765443221111111 1222 2367777777754
Q ss_pred CeEEEEEcCCceeEEE
Q 001311 1005 ATVCVFSAANLKLRCR 1020 (1102)
Q Consensus 1005 g~I~vwd~~~~~~~~~ 1020 (1102)
..+.+||+.+.+-...
T Consensus 278 ~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 278 NDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCEEEEETTTTEEEEE
T ss_pred eeEEEEeCCCCEehhh
Confidence 3588889888765443
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.23 E-value=0.17 Score=49.31 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=84.1
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc--------ceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311 849 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSSD 920 (1102)
Q Consensus 849 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~s~Dg~i~vwd~~ 920 (1102)
.++.++|+| ++.+.++ .+|.++-.+..+... ..+-+-... -.++.|.++|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 678999999 8988877 678777666544211 111111112 478999999988888 56888877653
Q ss_pred CCcccceee--eecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEe-----eeeccCCCCCCeeEEEEcC
Q 001311 921 GWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFSC 993 (1102)
Q Consensus 921 ~~~~~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~~sp 993 (1102)
+.......- ..+-.+.- ..+..+.|.|+|.+.++. ++.++-....+.... .+...+.....-..+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 322211100 00001000 256889999999999988 887644333221100 0111112233455577888
Q ss_pred CCcEEEEEeCCCeE
Q 001311 994 DSQLVYACFLDATV 1007 (1102)
Q Consensus 994 d~~~l~s~s~Dg~I 1007 (1102)
++.+.++. +|.+
T Consensus 192 ~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 192 VGTLFGVQ--GGKF 203 (236)
T ss_dssp TSCEEEEE--TTEE
T ss_pred CCcEEEEe--CCeE
Confidence 88776655 6633
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.17 E-value=4.1 Score=43.44 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCe
Q 001311 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 422 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 422 (1102)
-...+.|+|.|||+ ++++--..|.|++++..+++......+ ..+.....+....|+|+|| +.+
T Consensus 31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g~ 96 (347)
T 3das_A 31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDHM 96 (347)
T ss_dssp CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHCE
T ss_pred CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCCE
Confidence 35679999999998 466655589999998766554221000 0122334567899999995 344
Q ss_pred EEEE-E--CCCeEEEEEccCCc----e---eeeEE-Eee-ccccCEEEEEEcCCCCeeEEEEec
Q 001311 423 FGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITCG 474 (1102)
Q Consensus 423 las~-~--~d~~v~vwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~~ 474 (1102)
|... + .+..|.-|.+..+. . .+.+. .+. +....-..|+|.|||. +.++.+
T Consensus 97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 4432 2 34566667665521 1 11111 121 1112346799999997 555543
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.2 Score=53.31 Aligned_cols=116 Identities=10% Similarity=0.077 Sum_probs=67.6
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccC
Q 001311 361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG 439 (1102)
Q Consensus 361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~ 439 (1102)
+++.++.||.|.-.|..+|+.+-..... .. .... ...+... ..++..++.. +.||.|..++..+
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~---~p~~---~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~ 76 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE--NF---QPLI---EIQEPSR-------LETYETLIIEPFGDGNIYYFNAHQ 76 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG--GS---CCSE---ECCCSCT-------TTSSEEEEECCSTTTEEEEEETTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC--cc---CCcE---EecCCcc-------ccCCcEEEEEECCCCEEEEEECCC
Confidence 5889999999999999999987642211 00 0000 0001110 0133333333 5789999999887
Q ss_pred CceeeeEEEeec--cccCEEE---EEE------cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311 440 GDEVRQHLEIDA--HVGGVND---IAF------SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 440 ~~~~~~~~~l~~--h~~~V~~---v~~------s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~ 495 (1102)
|...... .... ...++.. ... +.++ .+++|+.++.+...|+.+|+.+..+..
T Consensus 77 G~~~~~~-~~~~lv~~SP~~~~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 77 GLQKLPL-SIRQLVSTSPLHLKTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEEEEE-EHHHHHTTCSEEEECC----------CCE---EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred CcEEeee-ccccceeccccccCCCceeecccccccCC---EEEEEecCCEEEEEECCCCcEEEEEec
Confidence 7433211 1111 1112221 000 1233 589999999999999999999998863
No 344
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.73 E-value=4.9 Score=42.10 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=98.2
Q ss_pred ecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC--------------CcEEEEEe
Q 001311 815 SKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNV 877 (1102)
Q Consensus 815 s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd~ 877 (1102)
+.++.+|.... ++.|...+..... ...+.. -.+--+++ ++.+|+..... ..|+..++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 45777777664 4677777765433 333321 12345677 67777766543 35666666
Q ss_pred ecceeeeeeccccccceeEEEecCCCEEEEEc--CCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311 878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 953 (1102)
Q Consensus 878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 953 (1102)
...+ ...+... .+..|++++++|+-.. .++ .|..-++++... ..+.. . .+ .+|+++|+
T Consensus 96 dg~~-~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g~ 157 (302)
T 3s25_A 96 NGHG-STVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSDR 157 (302)
T ss_dssp TSCC-CEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEETT
T ss_pred CCCc-ceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEECC
Confidence 5544 2233211 1236788999988765 334 455555554322 11211 1 11 35688999
Q ss_pred EEEEEe--CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--CeEEEEEcCCce
Q 001311 954 HFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1016 (1102)
Q Consensus 954 ~l~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D--g~I~vwd~~~~~ 1016 (1102)
.|.-.. ...|...++..+.....+. +... ..+.|++++|+-...+ ..|..-+++...
T Consensus 158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 158 YFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 988754 4678888887776554432 1222 3466999998876644 356666666554
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.62 E-value=0.93 Score=56.83 Aligned_cols=246 Identities=9% Similarity=0.095 Sum_probs=134.7
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311 352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431 (1102)
Q Consensus 352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 431 (1102)
.-.+|..+ ++|.=. ..++.|+|+++.+.+....+ ...|..=.|-.+.. |+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCe
Confidence 34566665 344433 57899999998877654221 23565556654443 33332 356
Q ss_pred EEEEEccCCceeeeEEEeecc----ccCEEEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311 432 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 501 (1102)
Q Consensus 432 v~vwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~vWd~~~~~~~~~~~~h~~~v~ 501 (1102)
|.-|++.+.....+ .+.-| ...|..-.-+++.+. ++++|= -.|.+.++.++. +..+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhh
Confidence 99999975332211 23233 346777778888885 333332 457888888654 33456677766554
Q ss_pred EEeeeecCCccEEEE-EeC---CCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311 502 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 576 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s-~s~---dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~ 576 (1102)
.+.+...+....+++ +.. .+.+++-++... .....+ ......+.|.|+.. .....++.+++.-..
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f---~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC---ccccccccCCcccc-------cCcceEEEeccccCE
Confidence 443321121122222 221 267888887553 111111 11233445555432 223445667777778
Q ss_pred EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311 577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637 (1102)
Q Consensus 577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 637 (1102)
+...+.-|.|.+||+.++.++..-..... .|...+......-++.....|.|.-..+..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 88899999999999999998766543332 233233333222333334556555544433
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.60 E-value=2.8 Score=47.04 Aligned_cols=109 Identities=10% Similarity=0.083 Sum_probs=62.3
Q ss_pred cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC--CCCCCCcEEEEccC---CcEEEEE--e-----
Q 001311 892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H----- 959 (1102)
Q Consensus 892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd---g~~l~~~--~----- 959 (1102)
..++|+|.|||+++++--..+.|++++..++... .+..+..... ........++|+|| +.+|.++ .
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4578999999998887655457888876544322 1222221110 11245679999995 5555443 2
Q ss_pred -------CCeEEEEEcCCc-------eEee-eeccCCCCCCeeEEEEcCCCcEEEEEeC
Q 001311 960 -------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus 960 -------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
...|.-|+...+ +.+. .+. .........|+|.|||.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 234555554321 1111 122 121234789999999998777654
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.11 E-value=4 Score=48.84 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=105.5
Q ss_pred cCCCeEEEEe-C----CeEEEEEcCCCceeeee-c-------CCCCCeeEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001311 816 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 876 (1102)
Q Consensus 816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~~-~-------~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd 876 (1102)
.++..++.|+ + ..+.+||..+.+-...- . .......++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5666666665 3 35889998775533222 1 1112233444432 567888887543 578899
Q ss_pred eecce--eeeeeccccccceeEEEecCCCEEEEEcCCC--cEEEEEcCCCcccceeeeecCCCCCCCC-CCCcEEEEccC
Q 001311 877 VRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTA-QSDTRVQFHQD 951 (1102)
Q Consensus 877 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd 951 (1102)
..+.+ .+..+...... .+++...+++.++.||.++ .+.+||..+..- ..+.. .+..+.. .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W---~~~~~-~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF---KDVTP-KDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEE---EECCC-SSGGGGSCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCce---EEccC-CCCCCCcccceeEEEEeCC
Confidence 87743 23222211111 1222224788888888655 689999887542 22221 0000000 12234566665
Q ss_pred -CcEEEEE-e--C-----CeEEEEEcCCce------EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--------CeEE
Q 001311 952 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1008 (1102)
Q Consensus 952 -g~~l~~~-~--d-----~~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D--------g~I~ 1008 (1102)
++.++.| . + +.+.+||+.+.. .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666664 3 2 468999998877 22211100011111233334447888888743 4599
Q ss_pred EEEcCCceeE
Q 001311 1009 VFSAANLKLR 1018 (1102)
Q Consensus 1009 vwd~~~~~~~ 1018 (1102)
+||..+++-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 348
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.28 E-value=14 Score=39.53 Aligned_cols=163 Identities=10% Similarity=0.141 Sum_probs=92.7
Q ss_pred CCCeeEEEEecCCCeEEEEEe-------------cCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311 346 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVS 410 (1102)
Q Consensus 346 ~~~v~~v~~spdg~~llasg~-------------~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 410 (1102)
......+++.|+|. +.+++ .+|.|.++|.++. +.. . +.+-. . .+......
T Consensus 49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~--l~~~g-----~-----~~~~~~f~ 113 (355)
T 3sre_A 49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-E--LEIIG-----N-----TLDISSFN 113 (355)
T ss_dssp CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEE-E--CEEEC-----S-----SCCGGGCC
T ss_pred CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-E--EEccC-----C-----CCCcCcee
Confidence 34667888899886 34443 6899999998742 221 1 11100 0 01112235
Q ss_pred eEEEEEcc--CCC-eEEEEE-C--CCeEEEEEccCCc-eeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEec--------
Q 001311 411 VNRVIWSP--DGS-LFGVAY-S--RHIVQIYSYHGGD-EVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG-------- 474 (1102)
Q Consensus 411 V~~l~~sp--dg~-~las~~-~--d~~v~vwd~~~~~-~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~-------- 474 (1102)
...+.+.+ +|+ +|.++. . +.+|.||+++.+. ......++.+. -...+.+++.++|. +.++..
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYL 191 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccc
Confidence 66677766 454 455442 2 5688999887643 23333334332 23578999999998 566643
Q ss_pred ---------CCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCC
Q 001311 475 ---------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDN 530 (1102)
Q Consensus 475 ---------~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~ 530 (1102)
..+.|..+|. ++. ..+...-..-+.++|+ +|++.++.+ +..+.|..|+++.
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s--pDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS--PDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECT
T ss_pred ccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceEC--CCCCEEEEEeCCCCeEEEEEECC
Confidence 1244555554 433 2332233456788885 555555554 5678999999874
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.62 E-value=8.7 Score=39.74 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=113.6
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 887 (1102)
.|..++....- .++.. ||.|+.|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666655432 33333 88899998664332221111233577777754 344554 5 9999999865422111111
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 967 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd 967 (1102)
.-...|..|+...+. .+... ||.|..|-......... ... ....|..++...+ +.++-.|+.|+.|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~--~~~~l~~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVY--TALAVKNGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSS--EEEEEETTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccC--EEEEEECCEEEEec
Confidence 112457777766443 33334 89999997654322110 000 0123444444333 22222388898887
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
......+.... .-...|..++...+.. ++. .||.|+.|-....-.+. .+.. ....+. .|+-..
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 65432222111 1134677777654433 333 59999999765432221 1100 011133 454432
Q ss_pred CCEEEEEecCCcEEEEeccCC
Q 001311 1048 PNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus 1048 ~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
...++.. ||.|+.|=-...
T Consensus 229 ~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCEEEEE--TTEEEEESTTCC
T ss_pred CEEEEEE--CCEEEEecCCCC
Confidence 2344444 999999976554
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.90 E-value=21 Score=38.93 Aligned_cols=260 Identities=10% Similarity=0.033 Sum_probs=117.2
Q ss_pred CCCeeEEEEec--CCCeEEEEeCC----eEEEEEcCCCceeeeec------C--------CCCCeeEEEEecCC-CcEEE
Q 001311 806 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA 864 (1102)
Q Consensus 806 ~~~i~~l~~s~--d~~~las~sdg----~I~iwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~d-~~~la 864 (1102)
...|.+|+++| ++.+.+.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 55555555454 444332 2222211111 1 11247788998733 44555
Q ss_pred EEeCCCcEEEEEee--cceeeeeecc----------------ccccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCccc
Q 001311 865 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ 925 (1102)
Q Consensus 865 sg~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~ 925 (1102)
.++..+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t- 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD- 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence 56556655544211 1122211111 1235778999873 33444444344344332 22221
Q ss_pred ceeeeec-CCC-CCC-----CCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceEeeeeccCCCC---CCeeEEEEcC-
Q 001311 926 KNRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC- 993 (1102)
Q Consensus 926 ~~~~~~~-~~~-~~~-----~~~~v~~~~~spd-g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~l~~sp- 993 (1102)
...... ... ..+ ....+..++++|+ ...|.++..+.|...+-. ++.-..+...-.. ..+.+++++|
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence 111111 000 000 0124678899886 355555655655554422 3222222210111 3467788876
Q ss_pred CCcEEEEEeC-----------CCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311 994 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus 994 d~~~l~s~s~-----------Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
+...|..+.. ++...||.... |+.-..+. .-++....-..+....++++|.++..|..++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 3333444432 33345565544 34333332 112221000001112577887666667777666664
Q ss_pred EEeccCCCccccc
Q 001311 1062 VFEPLESEGKWGV 1074 (1102)
Q Consensus 1062 vW~~~~~~~~~~~ 1074 (1102)
|.-..+...|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444445554
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.06 E-value=20 Score=37.36 Aligned_cols=175 Identities=12% Similarity=0.143 Sum_probs=102.1
Q ss_pred EEEecCCCeEEEEe-C--------------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--CCCcEEE
Q 001311 812 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQI 874 (1102)
Q Consensus 812 l~~s~d~~~las~s-d--------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~v 874 (1102)
--++++|.+|+... . ..|+..++...+...... . .+.+|++ ++++|+... .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678999888776 2 257777777655333222 1 2336788 677777665 3444444
Q ss_pred EEeec-ceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311 875 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 952 (1102)
Q Consensus 875 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 952 (1102)
|.+.. +.....+..+.. .+|+++++.|.-.+. ..+|.+-++.++... .+ ..+. ....++|++
T Consensus 132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~g 195 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLDD 195 (302)
T ss_dssp EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEET
T ss_pred EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeecC
Confidence 44432 334455544432 457888988886655 567888888775431 11 1221 223467999
Q ss_pred cEEEEEe--C-CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC--CCeEEEEEcCCc
Q 001311 953 IHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1015 (1102)
Q Consensus 953 ~~l~~~~--d-~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~--Dg~I~vwd~~~~ 1015 (1102)
.+|+-.. + ..|..-++....... +. ...+ ..|+|++++|+-++. .+.|..-+++..
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPVV-LT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCEE-CS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeEE-Ee----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 9988742 2 356666766555332 22 2233 347888998876643 356666666543
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.90 E-value=10 Score=45.18 Aligned_cols=198 Identities=11% Similarity=0.056 Sum_probs=104.0
Q ss_pred CCcEEEEEeCC----CcEEEEEeecceeeeee-c-----cccccc-eeEEEec-CCCEEEEEcCCC------cEEEEEcC
Q 001311 859 DNNIIAIGMDD----SSIQIYNVRVDEVKSKL-K-----GHSKRI-TGLAFSH-ALNVLVSSGADS------QLCVWSSD 920 (1102)
Q Consensus 859 d~~~lasg~~d----g~v~vwd~~~~~~~~~l-~-----~h~~~V-~~l~~s~-d~~~l~s~s~Dg------~i~vwd~~ 920 (1102)
++.+++.|+.+ ..+.+||..+++-...- . ...... .+++... +++.++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777777754 46888998775422211 1 111111 1233333 777888887543 47888888
Q ss_pred CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC--CeEEEEEcCCceEeeeec---cCCCCCCeeEEEEcCC
Q 001311 921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--TQLAIFETTKLECVKQWV---PRESSAPITHATFSCD 994 (1102)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d--~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd 994 (1102)
+.+-.. +.... .+..-..++.-.+++.++.| .+ +.+.+||..+.+....-. .........++.+..+
T Consensus 477 t~~W~~---~~~~p----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSM---IKSLS----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEE---CCCCS----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEE---CCCCC----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 753221 11111 01122333443477777774 32 279999999877654321 0011122233555555
Q ss_pred -CcEEEEEeC--C-----CeEEEEEcCCcee-----EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC----
Q 001311 995 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1057 (1102)
Q Consensus 995 -~~~l~s~s~--D-----g~I~vwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---- 1057 (1102)
+++++.|+. + ..+.+||+.+..- -..+......+.. .+ ++.... ++.+++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence 777777775 2 4589999988871 1111110001110 11 222222 26788888753
Q ss_pred ----CcEEEEeccCCCcccc
Q 001311 1058 ----GGVHVFEPLESEGKWG 1073 (1102)
Q Consensus 1058 ----g~v~vW~~~~~~~~~~ 1073 (1102)
..|.++|+.+.+ |.
T Consensus 622 ~~~~~~v~~yd~~t~~--W~ 639 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET--LT 639 (695)
T ss_dssp CCTTTSEEEEETTTTE--EE
T ss_pred CCCCCeEEEEECCCCe--EE
Confidence 468899987765 55
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.32 E-value=26 Score=37.64 Aligned_cols=155 Identities=8% Similarity=0.085 Sum_probs=87.1
Q ss_pred eEEEEEcCCC--ceeeeecCC------CCCeeEEEEe---cC---CCcEEEEEe-CCCcEEEEEeecceeeeeecccccc
Q 001311 828 KISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSKR 892 (1102)
Q Consensus 828 ~I~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~ 892 (1102)
+|.+||+.+. +.++++.-. .+....+++. |. ++.++...+ ..+-|.|||+.+++..+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5777888887 777665422 3457788887 21 134444444 4678999999998876665321
Q ss_pred ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC----CcEEEEEeCCeEEEEEc
Q 001311 893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFET 968 (1102)
Q Consensus 893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd----g~~l~~~~d~~i~iwd~ 968 (1102)
|.|+.....+. +|.-..|. ..+..+++||+ ++.|....=..-++|.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V 251 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV 251 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred -----CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence 34441111111 22222221 15678888887 77777653333334443
Q ss_pred CC-----c---eEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCCCeEEEEEcCC
Q 001311 969 TK-----L---ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 969 ~~-----~---~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
.+ . ..+..+...+....-..+++. .+|.++++--....|..|+..+
T Consensus 252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 32 1 111222111112334456775 6787778778889999999876
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.19 E-value=22 Score=36.61 Aligned_cols=184 Identities=8% Similarity=0.007 Sum_probs=96.3
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 887 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 887 (1102)
.|..++...+-.. +. .||.|+.|-....-.+..-..-...|..++... ...++ -. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs~-~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSL-AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEE-EE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 4666666544333 33 488888888664322221111134677777764 33333 45 9999999865422222111
Q ss_pred cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311 888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 967 (1102)
Q Consensus 888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd 967 (1102)
.....|..|+...+. .+... ||.|..|-......... +... ...|..++...+... +. .++.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 223457666664433 22233 79999997654322110 0000 124555555444333 33 789999997
Q ss_pred cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311 968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus 968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
......+..-. .....|..++-..+...+++ ||.|+.|-....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 65432222111 11345777776544433333 999999976543
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.46 E-value=36 Score=40.37 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=122.2
Q ss_pred eEEE-EecCCCeEEEEe--C----CeEEEEEcCCCceeee-ecCCCC--------CeeEEEEecCCCcEEEEEe------
Q 001311 810 PCFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------ 867 (1102)
Q Consensus 810 ~~l~-~s~d~~~las~s--d----g~I~iwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~------ 867 (1102)
..+. ++||+++++.+- + ..++++|+.+++.+.. +. ... ....++|.. +..++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence 3344 889999888762 2 3599999999877632 22 111 114457875 444444321
Q ss_pred ----CCCcEEEEEeecce--eeeeeccccccc-eeEEEecCCC-----EEEEEcCC---CcEEEEEcCCCcccceeeeec
Q 001311 868 ----DDSSIQIYNVRVDE--VKSKLKGHSKRI-TGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQI 932 (1102)
Q Consensus 868 ----~dg~v~vwd~~~~~--~~~~l~~h~~~V-~~l~~s~d~~-----~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~ 932 (1102)
....|+.|.+.+.. -...+.+....+ .+...+.|++ .+++.+.+ ..+.+.+...... ....+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL-KLQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC-EEEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC-cceEeec
Confidence 12468888876532 222233322222 2345566766 24444423 3355556543111 0111211
Q ss_pred CCCCCCCCCCCcEEEEccCCcEEEEE-----------eCCeEEEEEcCCce-------EeeeeccCCCCCCeeEEEEcCC
Q 001311 933 PTGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCD 994 (1102)
Q Consensus 933 ~~~~~~~~~~v~~~~~spdg~~l~~~-----------~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~spd 994 (1102)
.. -..+..+.++.+++.. ..+.|.+.++.++. ....+........+..+.+..+
T Consensus 289 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 289 PS--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp CT--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred CC--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 11 1233455666666632 35678899987642 1222222233567888999876
Q ss_pred CcEEEEEeCCCe--EEEEEcCCce-eEEE-eCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC---CcEEEEecc
Q 001311 995 SQLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1066 (1102)
Q Consensus 995 ~~~l~s~s~Dg~--I~vwd~~~~~-~~~~-~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---g~v~vW~~~ 1066 (1102)
.++++...++. |+++++.+++ .... +. ++.. ..+. .....++.+.++++.++. +.+..+|+.
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56777777775 6777777775 2222 33 2211 1122 334445444555555543 467777765
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.13 E-value=3.8 Score=45.92 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCce-------------eeeecCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311 806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 870 (1102)
Q Consensus 806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 870 (1102)
......+.++|||+++++++ +.++.++|+..... ....+ -.-.....+|.+ +|+-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456789999999999988 78999999874211 11222 234578899999 787667777999
Q ss_pred cEEEEEeecc----------eeeeeeccccccceeEE------EecCCCEEEEEc---CCCcE----------EEEEcCC
Q 001311 871 SIQIYNVRVD----------EVKSKLKGHSKRITGLA------FSHALNVLVSSG---ADSQL----------CVWSSDG 921 (1102)
Q Consensus 871 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~------~s~d~~~l~s~s---~Dg~i----------~vwd~~~ 921 (1102)
+|.-|++... ..+.++.-|-.+ -.+. -.+||++|++.. .|+.+ .+.|+.+
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 9999999763 355555544432 2222 257999999974 45443 5666655
Q ss_pred Cc
Q 001311 922 WE 923 (1102)
Q Consensus 922 ~~ 923 (1102)
.+
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.85 E-value=11 Score=42.25 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=61.1
Q ss_pred cceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC-----CCCCCCcEEEEccC----CcEEEE-EeC
Q 001311 892 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VHE 960 (1102)
Q Consensus 892 ~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~spd----g~~l~~-~~d 960 (1102)
.-++|+|.|||. .|+++...|.|++++...... ...+..+..... ........++|+|+ +.+.++ +.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 357899999995 444456789999997543211 111121111100 01246688999997 444333 321
Q ss_pred ------------CeEEEEEcCC----------ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311 961 ------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus 961 ------------~~i~iwd~~~----------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
..|.-|.+.. .+.+..+...........|+|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455532 12333332112123468999999998877766543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.59 E-value=6.7 Score=48.63 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=53.0
Q ss_pred CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE---ecCCc
Q 001311 983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGG 1059 (1102)
Q Consensus 983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~---~~Dg~ 1059 (1102)
...+.+++..++..++++-+.|+++|||++.+++++.........+... . .. .....|..+.++.+- ..+|.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~--~-~~--~~~~~~~~~~~i~v~~s~~~~g~ 309 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ--S-FP--YLTSDHTTNSFIALYYPDNSHGS 309 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSC--C-CC--CEEECSSSTTEEEEEECCSSSCE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccc--c-cc--ccccCCCcccEEEEEEcCCCCcE
Confidence 3467778888899999999999999999999999999876443332221 1 11 122233334444332 24577
Q ss_pred EEEEeccCCC
Q 001311 1060 VHVFEPLESE 1069 (1102)
Q Consensus 1060 v~vW~~~~~~ 1069 (1102)
.++|.+....
T Consensus 310 F~~~~~~~~~ 319 (950)
T 4gq2_M 310 FSIYKLNANA 319 (950)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEecCC
Confidence 8888875544
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.66 E-value=69 Score=33.62 Aligned_cols=211 Identities=10% Similarity=0.000 Sum_probs=107.8
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEc---cCC------ceeeeEEEeeccccCEEEEE-EcC--CCCeeEEEEecC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSY---HGG------DEVRQHLEIDAHVGGVNDIA-FSH--PNKQLCVITCGD 475 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~---~~~------~~~~~~~~l~~h~~~V~~v~-~s~--d~~~~~l~s~~~ 475 (1102)
.+.+..+........|+.-+..|.++-... ... ..+.....+.. ...|.++. +.. ++. +++..+.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~--~~v~~T~ 117 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAP--YLVLATR 117 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSS--EEEEEET
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCC--EEEEEcC
Confidence 456777777777777887888887665543 221 11111111222 34455544 432 355 7889999
Q ss_pred CCcEEEEeCCC-------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311 476 DKTIKVWDATN-------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 548 (1102)
Q Consensus 476 d~~i~vWd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1102)
+|.|+.-.+.. |.....+.. .+.+..+... .. ...|+..+..|.+..+.....+. ....-....+..+.
T Consensus 118 ~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~-~~-~d~ill~T~~G~~~rf~~~~~ei-p~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 118 NGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLC-SA-GDDLLLVSANGQSIRFSATDEAL-RPMGRATSGVQGMR 193 (327)
T ss_dssp TSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEE-CT-TCEEEEEETTSEEEEEECCTTTS-CCCCTTSBCEESSC
T ss_pred CCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEe-cC-CCEEEEEECCCeEEEEECccccc-CcCCcCCCCeeeec
Confidence 99999987654 222223443 3344444332 22 35677788889988887662111 11111111122222
Q ss_pred EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-------eEEEEcCCCCCCCcCeEEEcCCCCEE
Q 001311 549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-------LLTSIDADGGLPASPRIRFNKDGCLL 621 (1102)
Q Consensus 549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l 621 (1102)
+.++ ..+..+...+.+..++.++..|.++.-.+..-. -+..+........+..+....+...+
T Consensus 194 L~~~----------d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 194 FNID----------DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp CCTT----------CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred CCCC----------CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccE
Confidence 2221 234444333445678999999999888764322 12222221111234333333344455
Q ss_pred EEEECCCcEEEEEc
Q 001311 622 AVSTNDNGIKILAT 635 (1102)
Q Consensus 622 ~~~~~dg~i~iwd~ 635 (1102)
+..+.+|.+.-++.
T Consensus 264 ~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 264 YAVTSGGGVIRTAA 277 (327)
T ss_dssp EEEEGGGCEEEEEG
T ss_pred EEEcCCCeEEEEeh
Confidence 55666666655554
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.14 E-value=96 Score=34.45 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCeeEEEEecCCC-eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccC----CCCCCeEEEEEccC--
Q 001311 347 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 419 (1102)
Q Consensus 347 ~~v~~v~~spdg~-~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 419 (1102)
...+.|+|.|||+ +|++ +...|.|++++.... .... .+ -++ ...+.. +..+....|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~-~~~~-~~--~~~-------~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGE-IFKE-PY--LDI-------HKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSC-BCSS-CS--EEC-------TTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCC-eeee-ee--cCC-------cceeccCccccCCCcceeeEeCCCCc
Confidence 5678999999995 4444 466799999975422 1100 00 000 000111 23567889999996
Q ss_pred --CCeEEEEECC------------CeEEEEEccCC--c-----eeeeEEEee--ccccCEEEEEEcCCCCeeEEEEec
Q 001311 420 --GSLFGVAYSR------------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG 474 (1102)
Q Consensus 420 --g~~las~~~d------------~~v~vwd~~~~--~-----~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~ 474 (1102)
+.+.++-+.+ ..|.-|.+..+ . ..+.+..+. ........|+|.|||. |++.+|.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 4444443321 13444666432 0 111222222 1122468899999997 2444443
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.97 E-value=84 Score=38.81 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=47.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC---CCcCeEEEcC-CCCEEEEE---ECCCcEEEEEcc
Q 001311 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 636 (1102)
Q Consensus 564 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-~~~~l~~~---~~dg~i~iwd~~ 636 (1102)
.+.++...++..++++.+.|+++|+|++.+++++.+....... .........+ .+.++.+- ..+|..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 4566777788889999999999999999999999887542211 1112233344 33443332 235777777653
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=71.49 E-value=1.2e+02 Score=32.80 Aligned_cols=204 Identities=10% Similarity=0.048 Sum_probs=89.8
Q ss_pred CcEEEEEeCCCcEEEEEeec-ceeeeee--ccccccceeEEEec--CCCEEEEEcCCC----cEEEEEcCCCcccceeee
Q 001311 860 NNIIAIGMDDSSIQIYNVRV-DEVKSKL--KGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRFL 930 (1102)
Q Consensus 860 ~~~lasg~~dg~v~vwd~~~-~~~~~~l--~~h~~~V~~l~~s~--d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~ 930 (1102)
...|.+|+..| +.+++... ++.-... ......|.+|++.| ++.+.+.+ ..+ .|... .+.++. ...+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~-~~g~~g~gl~~s-~D~G~t--W~~~ 96 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAA-RTGHLGPTVFRS-DDGGGN--WTEA 96 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEE-EC--CCEEEEEE-SSTTSC--CEEC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEe-cCCCCCccEEEe-CCCCCC--ceEC
Confidence 34666777777 55555432 2211111 11235689999998 45555544 333 34333 222221 1111
Q ss_pred ecCCCCCC--------CCCCCcEEEEcc---CCcEEEEEeCCeEEEEEcC--CceEeeeecc--------------CCCC
Q 001311 931 QIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETT--KLECVKQWVP--------------RESS 983 (1102)
Q Consensus 931 ~~~~~~~~--------~~~~v~~~~~sp---dg~~l~~~~d~~i~iwd~~--~~~~~~~~~~--------------~~h~ 983 (1102)
....+... ....|..++++| .+...+.+..+.|...+-. +.+.+..... ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCC
Confidence 11100000 012466788886 3454444556655544221 1122211100 0123
Q ss_pred CCeeEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEEEeCC---CcccCCCCC--CCcccceEEEecCCCCCEEEEEecC
Q 001311 984 APITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus 984 ~~v~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~---~~~~~~gh~--~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
..+.+|.+.|. ...|+.+..++.|...+ +.|+.-..+.. ..+++.... ...+. .+.+.|.++..|..+...
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~--~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPH--CVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEE--EEEECSSSTTEEEEEETT
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCccee--EEEECCCCCCEEEEEcCC
Confidence 46889999873 34455555455444432 33333222221 111121000 01133 788888666777777654
Q ss_pred CcEEEEeccCCCccccc
Q 001311 1058 GGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus 1058 g~v~vW~~~~~~~~~~~ 1074 (1102)
+ ||....+..+|..
T Consensus 254 g---l~~s~D~G~tW~~ 267 (394)
T 3b7f_A 254 G---IYRMDRREGVWKR 267 (394)
T ss_dssp E---EEEEETTTTEEEC
T ss_pred e---EEEeCCCCCcceE
Confidence 4 3433344444443
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=70.77 E-value=96 Score=31.56 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=73.4
Q ss_pred CCCCeeEEEEec--CCCeEEEEe-CCeEEEEEcCCCc------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 805 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 805 ~~~~i~~l~~s~--d~~~las~s-dg~I~iwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
....|..+.. . +..+++..+ +|.++-..+.... ....+. ....+..+.... +...|+..+.+|.++.+
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEE
Confidence 3555666654 4 466777777 8999999876543 111122 234566665555 55678888999999988
Q ss_pred Eeecc---------eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 876 NVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 876 d~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
....- ...-.+.. ...|.++...+++..|+..+..|.++...+..
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 86431 11122332 35676766666677899999999999988765
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.45 E-value=1.3e+02 Score=31.46 Aligned_cols=158 Identities=8% Similarity=0.029 Sum_probs=90.9
Q ss_pred CCCeeEEEEec---CCCeEEEEe-CCeEEEEEcCCCcee-------eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEE
Q 001311 806 EEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 874 (1102)
Q Consensus 806 ~~~i~~l~~s~---d~~~las~s-dg~I~iwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v 874 (1102)
...|.++..-+ +..+++..+ +|.|+-..+...... ..+.. ...+..+.... +...|+..+.+|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45565554433 467788777 899999887653322 12332 34566555555 5567778889999998
Q ss_pred EEee--cc---------eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccc-----eeeeecCCCCCC
Q 001311 875 YNVR--VD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRTP 938 (1102)
Q Consensus 875 wd~~--~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~ 938 (1102)
+... .- ...-.+. ....|.++...+++.+|+.++..|.++.-.+....... ...+.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~--- 247 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR--- 247 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT---
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC---
Confidence 8876 31 1111222 24557777766677789999999999988876533211 111111110
Q ss_pred CCCCCcEEEEc-cCCcEEEEEeCCeEEEEEcCC
Q 001311 939 TAQSDTRVQFH-QDQIHFLVVHETQLAIFETTK 970 (1102)
Q Consensus 939 ~~~~v~~~~~s-pdg~~l~~~~d~~i~iwd~~~ 970 (1102)
...+..+... .+...+++..+|.+.-++...
T Consensus 248 -~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 -RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp -TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred -CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 1133333333 334444556777776666544
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=61.94 E-value=2.5e+02 Score=33.13 Aligned_cols=181 Identities=11% Similarity=0.028 Sum_probs=91.7
Q ss_pred CeEEEEEcCCCce--eeeecCCCCCe-eEEEEecCCCc-----EEEEEeCC---CcEEEEEeec--ceeeeeeccccccc
Q 001311 827 GKISLFNMMTFKT--MATFMPPPPAA-TFLAFHPQDNN-----IIAIGMDD---SSIQIYNVRV--DEVKSKLKGHSKRI 893 (1102)
Q Consensus 827 g~I~iwd~~~~~~--~~~~~~~~~~i-~~l~~sp~d~~-----~lasg~~d---g~v~vwd~~~--~~~~~~l~~h~~~V 893 (1102)
..|+.|.+-+... ...+.+....+ .....++ +++ .+++.+.+ ..+++.+... ++. ..+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--
Confidence 4588888766432 23344433333 2344555 444 24443322 4566666543 332 22322222
Q ss_pred eeEEEecCCCEEEEEc----------CCCcEEEEEcCCCcc-----cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311 894 TGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 958 (1102)
Q Consensus 894 ~~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~ 958 (1102)
..+..+.++.+++... ..+.|.+.++.++.. .....+-.... ...+..+.+..+.-++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA----NEVFNFISTTKDRVFLATY 367 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT----TEEEEEEEECSSCEEEEEE
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC----CCeEEEEEEECCEEEEEEE
Confidence 1234455666655331 356799999877531 12222111211 1356778888774333334
Q ss_pred eCC--eEEEEEcCCceE-eee-eccCCCCCCeeEEEEcCCCcE-EEEEeC---CCeEEEEEcCCcee
Q 001311 959 HET--QLAIFETTKLEC-VKQ-WVPRESSAPITHATFSCDSQL-VYACFL---DATVCVFSAANLKL 1017 (1102)
Q Consensus 959 ~d~--~i~iwd~~~~~~-~~~-~~~~~h~~~v~~l~~spd~~~-l~s~s~---Dg~I~vwd~~~~~~ 1017 (1102)
.++ .+.++++.+++. ... +.... .+.+....+++++.. +++.+. -+.+..+|+. ++.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 565 577888777652 222 22211 345777777777654 444443 2678888887 543
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.66 E-value=1.5e+02 Score=30.60 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=101.1
Q ss_pred EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccC-
Q 001311 361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG- 439 (1102)
Q Consensus 361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~- 439 (1102)
++++-+.+|.|+--.+.+-+...... .......+. ..+.+..+........|+..+..|.++-.....
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~----------~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el 73 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGG----------KGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 73 (307)
T ss_dssp EEEEEETTSEEEEEECC-------------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCC----------CCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC
Confidence 36777888888766654422211000 000000111 234566666666777888888888876665431
Q ss_pred --------CceeeeEEEeeccccCEEEEEEc---CCCCeeEEEEecCCCcEEEEeCCC-------CeeeEEeecCCCCeE
Q 001311 440 --------GDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIKVWDATN-------GAKQYIFEGHEAPVY 501 (1102)
Q Consensus 440 --------~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~~~d~~i~vWd~~~-------~~~~~~~~~h~~~v~ 501 (1102)
|..+.....+. ....|.++... .++. +++..+.+|.++...+.. |.....+..+ +.+.
T Consensus 74 p~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~--~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv 149 (307)
T 1zi0_A 74 PEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGV--KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELI 149 (307)
T ss_dssp CCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEE
T ss_pred cCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCc--EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEE
Confidence 11111111122 23345555432 2444 577888899999987642 2222233334 4554
Q ss_pred EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311 502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 581 (1102)
Q Consensus 502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 581 (1102)
.+... .. ...++..+.+|.+..+....-... ......+..+.+..+ ..+..+....++..+++.+
T Consensus 150 ~~~~~-~~-~~~i~l~T~~G~~irf~~~~v~~~---gr~a~Gv~~i~L~~~----------d~Vv~~~~~~~~~~ll~~T 214 (307)
T 1zi0_A 150 GVDLT-SG-EDEVMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEG----------DKVVSLIVPRGDGAILTAT 214 (307)
T ss_dssp EEEEE-CT-TCEEEEEETTSEEEEEEGGGSCBC---CTTCCCEECCCCCTT----------CCEEEEECCCSSCEEEEEE
T ss_pred EEEEe-CC-CCEEEEECCCCcEEEEEHHHcCcc---CCCCCCeEeEEeCCC----------CEEEEEEEecCCCEEEEEE
Confidence 44432 22 346777788888887876532111 111122222222222 2333333333445788889
Q ss_pred CCCeEEEEECC
Q 001311 582 DDFSIKFWDMD 592 (1102)
Q Consensus 582 ~dg~i~iwd~~ 592 (1102)
..|.++-.++.
T Consensus 215 ~~G~~Kr~~~~ 225 (307)
T 1zi0_A 215 QNGYGKRTAVA 225 (307)
T ss_dssp TTSEEEEECGG
T ss_pred cCCceEEEEHH
Confidence 99999888774
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=59.62 E-value=1.5e+02 Score=29.99 Aligned_cols=197 Identities=6% Similarity=0.007 Sum_probs=102.5
Q ss_pred CCeeEEEE-ecCCCeEEEEeCCeEEE---EEcCCCceeeeecCCCCCeeEEEEecC-CCcEEEEEeCCCcEEEEEeecce
Q 001311 807 EAVPCFAL-SKNDSYVMSASGGKISL---FNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVDE 881 (1102)
Q Consensus 807 ~~i~~l~~-s~d~~~las~sdg~I~i---wd~~~~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~~~ 881 (1102)
+.+..+.. +....+++..+.|.++- |++........+. ....|.++.. .+ +..+++..+.+|.|+-..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 33444443 33444445555777554 3333221111132 3455666644 42 45789999999999999876532
Q ss_pred ------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcc-----cceeeeecCCCCCCCCCCCcEEEEcc
Q 001311 882 ------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQ 950 (1102)
Q Consensus 882 ------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp 950 (1102)
....++. .+.+..+........|+..+..|.+..+....-.. .....+....+ ..|..+...+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~ 175 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWN 175 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEES
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeC
Confidence 2222332 34566665555667888888999888887543211 11111222221 2445544444
Q ss_pred CCcEEEE-EeCCeEEEEEcCCceE-------eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEE--EEcCC
Q 001311 951 DQIHFLV-VHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAAN 1014 (1102)
Q Consensus 951 dg~~l~~-~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~v--wd~~~ 1014 (1102)
++.+++. ...|.++...+..... +..+ ...+.+..+....+...++..+.+|.+.. ++.+.
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 4444444 6778877777643221 1112 11334444443333445555666776666 66543
No 368
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=58.46 E-value=28 Score=30.35 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=7.4
Q ss_pred HhcCCHHHHHHHhcc
Q 001311 33 VHNGNWDDVEKYLSG 47 (1102)
Q Consensus 33 i~~g~w~~~~~~l~~ 47 (1102)
...|+|++|+..+.+
T Consensus 24 ~~~g~~~~A~~~~~~ 38 (126)
T 4gco_A 24 FKKGDYPTAMRHYNE 38 (126)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 344555555554444
No 369
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=57.74 E-value=37 Score=30.56 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHhhhcCCCcc--HHH---HHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHH
Q 001311 6 KKLFTSKHFLLEQESGFFFN--MKY---FEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 80 (1102)
Q Consensus 6 ~~g~~~s~~~l~~Esg~~~~--~~~---~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~ 80 (1102)
+.-+.++.+.+++-.....+ +.. =+-....|+|++|+..+.+...+..... . + +..+=..| ...|++++
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~-~-a-~~~lg~~~---~~~~~~~~ 83 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP-K-A-HRFLGLLY---ELEENTDK 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-H-HHHHHHHH---HHTTCHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-H-H-HHHHHHHH---HHcCchHH
Confidence 44577888888876665544 221 2235678999999999988534432221 1 2 22222233 34799999
Q ss_pred HHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 81 AVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 81 a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
|+.++++.+.- ...+++-+..|+.++..
T Consensus 84 A~~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 84 AVECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 99999985442 33367888888877654
No 370
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.59 E-value=38 Score=35.16 Aligned_cols=110 Identities=10% Similarity=0.188 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccc-ccccCHHHHHHHH
Q 001311 26 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV-FSTFNEELFKEIT 104 (1102)
Q Consensus 26 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~-l~~~~~~~~~~L~ 104 (1102)
+.+|++.|.+|++-+|.+.+..+ |.-++.++++.+|+.+|.+-..- |+.-...--..|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 78999999999999999988755 11122345666676666663222 2221233334455
Q ss_pred HHhcccccccccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccchHHHHHHHHHHHHHHHHhc
Q 001311 105 QLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 174 (1102)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~ 174 (1102)
.++.-- ..+ .++.-..+++.+|.+-+ +.+|++. + ....+++.+++|-....
T Consensus 77 ~llvev-~~~----~~~~~~~~~~~rl~~l~-~~~p~~~------------~-~r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-YDL----AEVKVDDISVARLVRLI-AELDPSE------------P-NLKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-HHH----TTCCCSHHHHHHHHHHH-TTCCTTC------------T-THHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HHH----cCCCCCHHHHHHHHHHH-HHCCCCC------------c-hHHHHHHHHHHHHhhcC
Confidence 444321 111 11212345566666433 4445421 2 34788888888887743
No 371
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=56.56 E-value=3 Score=33.67 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.4
Q ss_pred cchhHHhHHHHHHHHhhhcCCCc
Q 001311 2 RKSSKKLFTSKHFLLEQESGFFF 24 (1102)
Q Consensus 2 ~~~~~~g~~~s~~~l~~Esg~~~ 24 (1102)
|-|.|.||..||.+|++||.|.-
T Consensus 14 RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 14 RYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp HHHHHTTCHHHHHHHHHHTTGGG
T ss_pred HHHHHcCCHHHHHHHHHHhcCCc
Confidence 45789999999999999998875
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.17 E-value=2e+02 Score=29.83 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCCccccccCCCccceEecccCCCCCc----cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCC
Q 001311 701 DVKPRITEESNDKSKVWKLTELSEPNQ----CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 776 (1102)
Q Consensus 701 ~~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 776 (1102)
+...+++.+.+|.|+--.+........ ...+.+ ...+.+..+........++..++.|.++-..... . +.
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l---ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~--i-p~ 80 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYE--I-KD 80 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC---CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG--S-CC
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc---CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH--C-CC
Confidence 456678888889998877765433221 111111 1335566666666666788888888766554321 0 00
Q ss_pred CcccccccceeccCCCccccccccCCCCCCCCeeEEEEec---CCCeEEEEe-CCeEEEEEcCCCc-------eeeeecC
Q 001311 777 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFK-------TMATFMP 845 (1102)
Q Consensus 777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~---d~~~las~s-dg~I~iwd~~~~~-------~~~~~~~ 845 (1102)
.... ..|..+...+. ......|.++...+ +..+++..+ .|.++...+.... ....+..
T Consensus 81 ~~r~----------~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 81 SSRA----------SKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp -----------------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred CCcc----------CCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Confidence 0000 11221111111 11334455554433 345566666 8998888875432 1222332
Q ss_pred CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---------eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEE
Q 001311 846 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 916 (1102)
Q Consensus 846 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v 916 (1102)
...+..+.... +...++..+.+|.+..+....- ...-.+.. .+.|.++....++..|++.+..|..+.
T Consensus 150 -~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 150 -KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKR 226 (312)
T ss_dssp -TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEE
T ss_pred -CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEE
Confidence 45566666554 5567888899999999987541 11222332 345666666556677888899999999
Q ss_pred EEcCC
Q 001311 917 WSSDG 921 (1102)
Q Consensus 917 wd~~~ 921 (1102)
.++..
T Consensus 227 ~~~~e 231 (312)
T 1suu_A 227 LNMSK 231 (312)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 88865
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.26 E-value=6.6 Score=50.01 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=36.4
Q ss_pred CCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCccc
Q 001311 984 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1027 (1102)
Q Consensus 984 ~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~ 1027 (1102)
..+.+++..++..++++-+.|+++|||++.+++++.+.......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~~ 281 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTI 281 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCSS
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhcC
Confidence 35566677789999999999999999999999999987754443
No 374
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=48.93 E-value=31 Score=28.39 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=41.4
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccc-cccCHHHHHHHHHHh
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVF-STFNEELFKEITQLL 107 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l-~~~~~~~~~~L~~ll 107 (1102)
-....|+|++|+..+++...+.... .. + +..+=+.|. ..|++++|+..+++-+.-- ..-+.....+|..++
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~-~~-a-~~~lg~~~~---~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDY-VG-T-YYHLGKLYE---RLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC-TH-H-HHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-HH-H-HHHHHHHHH---HcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 3566899999999998853333221 11 2 222333333 4799999999999854321 222444455555444
No 375
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.38 E-value=48 Score=34.11 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=8.1
Q ss_pred HhcCCHHHHHHHhccc
Q 001311 33 VHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 33 i~~g~w~~~~~~l~~~ 48 (1102)
...|++++|+..++.+
T Consensus 141 ~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 141 LKLDRLDLARKELKKM 156 (291)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3445555555555443
No 376
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.61 E-value=45 Score=38.98 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=31.0
Q ss_pred CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCC
Q 001311 985 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus 985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1023 (1102)
.|.++.+ +..+|++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 578999999999999999999999988775
No 377
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.01 E-value=48 Score=38.04 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCcEEEEccCCcEEEEEe-------------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311 942 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus 942 ~v~~~~~spdg~~l~~~~-------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
..-.|+|+|.|.++++-. +..+.+.+..+++..+.+.. .-..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 447799999999666521 12466677777877666553 236799999999999988765
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=44.99 E-value=2.9e+02 Score=28.75 Aligned_cols=167 Identities=10% Similarity=0.041 Sum_probs=90.1
Q ss_pred CCCeEEEEEccCCCeEEEEECCCeEEEEEccC---------CceeeeEEEeeccccCEEEE-EEcC--CCCeeEEEEecC
Q 001311 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG---------GDEVRQHLEIDAHVGGVNDI-AFSH--PNKQLCVITCGD 475 (1102)
Q Consensus 408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~---------~~~~~~~~~l~~h~~~V~~v-~~s~--d~~~~~l~s~~~ 475 (1102)
.+.+..+........|+..+..|.++-..... |..+.....+.. ...|.++ .... ++. +++..+.
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~--~ll~~T~ 114 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDR-DEEIIKAIPINDFELNG--YFLFVTR 114 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCT-TCCEEEEEEESCTTSSC--EEEEEET
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCC-CCEEEEEEEecccCCCc--eEEEEeC
Confidence 35666666677777888888889876665531 221111111222 2345544 3432 244 5788899
Q ss_pred CCcEEEEeCCC--------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEE
Q 001311 476 DKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 547 (1102)
Q Consensus 476 d~~i~vWd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1102)
+|.++...+.. |.....+... +.+..+... . +...++..+.+|.+..+....-.. ..-....+..+
T Consensus 115 ~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~-~-~~~~i~l~T~~G~~irf~~~ev~~---~gR~a~GV~~i 188 (323)
T 1wp5_A 115 NGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLT-D-GMNELFLVTHNGYALWFDESEVSI---VGVRAAGVKGM 188 (323)
T ss_dssp TSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEE-C-SCSEEEEEETTSEEEEEEGGGSCB---CCSSCCCEECC
T ss_pred CCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEe-C-CCCEEEEEeCCCcEEEEEHHHCcc---cCCCCcCEEEE
Confidence 99999988742 2222233322 445444432 2 234677788889988887754211 11112233333
Q ss_pred EEccCCceeeeccccCceeEEEEcCCCC-EEEEEeCCCeEEEEECCC
Q 001311 548 AYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDS 593 (1102)
Q Consensus 548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 593 (1102)
.+..+. .+..+..-+++. .++..+..|..+..++..
T Consensus 189 ~L~~~d----------~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 189 NLKEGD----------YIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CCCTTC----------CEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EeCCCC----------EEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 332222 233332222334 688888899888877653
No 379
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.91 E-value=65 Score=30.74 Aligned_cols=116 Identities=9% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHhcccc---cccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccc
Q 001311 39 DDVEKYLSGFT---KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFREN 115 (1102)
Q Consensus 39 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~ 115 (1102)
+.|+..++.++ .+++.. ...+.=+|.+|..+=.+++|++.+|.++|.+.+.. ...+...=.+|..++...+. .|
T Consensus 89 ESAl~v~~~I~~e~~l~~~l-~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~-~~s~~kLr~kL~~II~~Kd~-~H 165 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAV-VESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK-DPTTQKLRNDLLNIIREKNL-AH 165 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-CGGGHHHHHHHHHHHHHTCT-TS
T ss_pred HHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC-CCCchHHHHHHHHHHhccCc-cc
Confidence 33555555442 222232 23388899999999999999999999999987776 22223334467777766433 45
Q ss_pred cccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccchHHHHHHHHHHHHHHHHhc
Q 001311 116 EQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 174 (1102)
Q Consensus 116 ~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~~ 174 (1102)
..+.++ |=..+.++|..++..-.- .++. .||..|.+-+.+.|
T Consensus 166 ~~lqnF-----Sy~~~~~ki~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~ 207 (235)
T 3bu8_A 166 PVIQNF-----SYETFQQKMLRFLESHLD---------DAEP---YLLTMAKKALKSES 207 (235)
T ss_dssp HHHHTC-----CHHHHHHHHHHHHHTTSC---------CCCC---HHHHHHHHHTTTC-
T ss_pred HHHHhc-----cHHHHHHHHHHHHHHHhc---------ccch---HHHHHHHHHHhhcc
Confidence 554434 335666666666655221 1122 67777777776655
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.56 E-value=57 Score=36.93 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCcEEEEccCCcEEEEEe-------------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe
Q 001311 942 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus 942 ~v~~~~~spdg~~l~~~~-------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 1002 (1102)
....++|+++|.+.++.. ...+..++..+++....+.. .....++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 457899999998877421 12677777777877665531 2245799999999999987764
No 381
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.03 E-value=85 Score=32.80 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCH---HHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccc-cccCHHHHH
Q 001311 26 MKYFEDEVHNGNW---DDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVF-STFNEELFK 101 (1102)
Q Consensus 26 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l-~~~~~~~~~ 101 (1102)
+.+|++.|.+|++ -+|-+.+..+. .+ ++.++++.+|+++|.+-..-| +.-...--.
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~----------~R----------y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVA----------AR----------YSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH----------HH----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHH----------HH----------HHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 7899999999999 88888776540 11 223455666666665522111 121233333
Q ss_pred HHHHHhcccccccccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccchHHHHHHHHHHHHHHHHh
Q 001311 102 EITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQL 173 (1102)
Q Consensus 102 ~L~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~q~~~ 173 (1102)
.|+.++.-- ..+ .++.-..+++.+|.+-|.. +|++ .|. ...+|+.|++|-...
T Consensus 76 DL~~llvev-y~~----~~~~~~~~~~~rL~~L~~~-~~~~------------~p~-r~~fi~~ai~WS~~~ 128 (336)
T 3lpz_A 76 DLAVLLVDT-FRQ----AGQRVDGASRGKLLGCLRL-FQPG------------EPV-RKRFVKEMIDWSKKF 128 (336)
T ss_dssp HHHHHHHHH-HHH----HTCCCCHHHHHHHHHHHTT-SCTT------------CHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHH----cCCCCCHHHHHHHHHHHHh-CCCC------------CcH-HHHHHHHHHHHHhhc
Confidence 455444311 111 1111123455666555543 3431 122 367888888887763
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.85 E-value=3.4e+02 Score=28.97 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=41.6
Q ss_pred eEEEEEccCC--ceeeeEEEeec----cccCEEEEEEc---CC---CCeeEEEEecCCCcEEEEeCCCCeeeEEe
Q 001311 431 IVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 493 (1102)
Q Consensus 431 ~v~vwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~d---~~~~~l~s~~~d~~i~vWd~~~~~~~~~~ 493 (1102)
.|.+||+.++ +.++.+ .+.. ....+..+++. ++ +.....++-+....|.|+|+.+++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5788899988 766543 3321 23467888887 22 12325566666788999999999877665
No 383
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=40.69 E-value=73 Score=27.03 Aligned_cols=69 Identities=7% Similarity=-0.009 Sum_probs=30.1
Q ss_pred HHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 32 EVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
....|+|++|+..+.+........ ..++...=.-++..+++++|+.++++.+.- ...+..-+..|+.+.
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 345666666666665532222111 111111111234456666666666654322 112344444444433
No 384
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=40.44 E-value=58 Score=27.88 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 108 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~ 108 (1102)
...+..|+|++|+..+++...+.... .. ..| .+=..|+ ..|+.++|+..|++-+.- ...+.+-+..|..++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~-~~-a~~-~lg~~~~---~~g~~~~A~~~~~~al~l-~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER-EE-AWR-SLGLTQA---ENEKDGLAIIALNHARML-DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC-HH-HHH-HHHHHHH---HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC-HH-HHH-HHHHHHH---HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 56678999999999998853332221 11 222 2233333 479999999999985432 2224566666665553
No 385
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=39.81 E-value=5.8 Score=31.84 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=33.6
Q ss_pred hhHHhHHHHHHHHhhhcCCCcc--HHHHHHHHhcCCHHHHHHHhccc
Q 001311 4 SSKKLFTSKHFLLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 4 ~~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 48 (1102)
|.-.||.+++.+|.+|.|+..+ ...=..-+|+=.|..++++=+++
T Consensus 21 L~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 21 LRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 5678999999999999999875 12224557777888777766554
No 386
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=39.73 E-value=42 Score=29.10 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHhcccccc-cCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001311 32 EVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 106 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~l 106 (1102)
....|+|++|+..+.+...+ |........+-.+|...=.-+...+++++|+..+++-|.- ..+++.+.+|..+
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~l 125 (127)
T 4gcn_A 52 YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVKEL 125 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHHHh
Confidence 45678888888877663222 2111000011111211111233468888888888875542 1256666666543
No 387
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.16 E-value=49 Score=41.98 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 603 (1102)
Q Consensus 564 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 603 (1102)
.+.+++..++..++++.+.|+++|+|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445566677789999999999999999999999887643
No 388
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=38.96 E-value=59 Score=28.13 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhhcCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHH
Q 001311 8 LFTSKHFLLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 82 (1102)
Q Consensus 8 g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~ 82 (1102)
-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...++.... . + +.-+=.. +...|++++|+
T Consensus 28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-a-~~~lg~~---~~~~~~~~~A~ 101 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-K-G-YIRKAAC---LVAMREWSKAQ 101 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-H-HHHHHHH---HHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-H-H-HHHHHHH---HHHCCCHHHHH
Confidence 366776666653322222 2333456678999999998887534433321 1 1 2222223 34579999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHHh
Q 001311 83 EILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 83 ~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
..+++-+.- ...+++-...|..||
T Consensus 102 ~~~~~al~l-~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 102 RAYEDALQV-DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHC
T ss_pred HHHHHHHHH-CcCCHHHHHHHHHhc
Confidence 999985432 333566666676654
No 389
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=38.61 E-value=72 Score=24.81 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
.....|+|++|+..+.+...+.... ..+.+.+ =.. +...+++++|+..+++-+.- ...+.+.+..|..+.
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l-~~~---~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL-GNA---YYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH-HHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHH-HHH---HHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 3567899999999888753332221 1122222 112 33479999999999985432 222455555555443
No 390
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=37.83 E-value=66 Score=27.34 Aligned_cols=93 Identities=9% Similarity=-0.031 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhhcCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHH
Q 001311 8 LFTSKHFLLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 82 (1102)
Q Consensus 8 g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~ 82 (1102)
-|.++...+++=.....+ ...-.-....|+|++|+..+.+...+.... ..+.+. +=+. +...|++++|+
T Consensus 31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~-la~~---~~~~~~~~~A~ 104 (133)
T 2lni_A 31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTR-KAAA---LEAMKDYTKAM 104 (133)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHH-HHHH---HHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHH-HHHH---HHHHhhHHHHH
Confidence 355666666654444332 233344556899999999888753332221 112222 2222 34579999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHHh
Q 001311 83 EILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 83 ~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
.++++.+.- ...+.+-+..|..+.
T Consensus 105 ~~~~~~~~~-~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 105 DVYQKALDL-DSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHH-CGGGTHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHH
Confidence 999875432 222344455555443
No 391
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.40 E-value=64 Score=27.51 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
.....|+|++|+..+.+...+.... ..++...=.-++..|++++|+..+++-+.- ...+.+-+..|..++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 4567899999999888753332221 112222222334579999999999985443 23356666677666544
No 392
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=36.08 E-value=82 Score=25.55 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=43.0
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccccccc--CHHHHHHHHHHh
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTF--NEELFKEITQLL 107 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~--~~~~~~~L~~ll 107 (1102)
......|+|++|+..+.+...+.... ..+.+ .+=.. +...|++++|+.++++.+.- ... +.+-+..|+.+.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~-~~a~~---~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPEE--SKYWL-MKGKA---LYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHH-HHHHH---HHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHH-HHHHH---HHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHH
Confidence 34567899999999888753332221 11222 22222 33479999999999985433 222 456666666655
Q ss_pred cc
Q 001311 108 TL 109 (1102)
Q Consensus 108 ~~ 109 (1102)
..
T Consensus 87 ~~ 88 (112)
T 2kck_A 87 RY 88 (112)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 393
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.54 E-value=77 Score=27.64 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001311 27 KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 106 (1102)
Q Consensus 27 ~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~l 106 (1102)
..=......|+|++|+..+.....+..... ....++...-.=++..+++++|+..+.+.+.- ...+.+-+..|+.+
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHH
Confidence 344556789999999999887533322210 11222222222245579999999999875443 22245666666665
Q ss_pred hcc
Q 001311 107 LTL 109 (1102)
Q Consensus 107 l~~ 109 (1102)
+..
T Consensus 109 ~~~ 111 (148)
T 2dba_A 109 LEK 111 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 394
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.42 E-value=71 Score=28.93 Aligned_cols=73 Identities=8% Similarity=0.003 Sum_probs=45.6
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
......|+|++|+..+.+...+.... . ..+..+=.. ++..|++++|+..+++-+.- ...+..-+..|..++..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~--~-~~~~~l~~~---~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPAN--P-IYLSNRAAA---YSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC--H-HHHHHHHHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcC--H-HHHHHHHHH---HHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 45568999999999988753333221 1 112222223 34579999999999985443 23356667777766644
No 395
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=33.99 E-value=1.3e+02 Score=24.50 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=8.0
Q ss_pred HhcCCHHHHHHHhcc
Q 001311 33 VHNGNWDDVEKYLSG 47 (1102)
Q Consensus 33 i~~g~w~~~~~~l~~ 47 (1102)
...|+|++|+..+..
T Consensus 15 ~~~~~~~~A~~~~~~ 29 (118)
T 1elw_A 15 LSVGNIDDALQCYSE 29 (118)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHH
Confidence 345555555555544
No 396
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=33.98 E-value=73 Score=28.05 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
......|+|++|+..+..+....... .. +.+ .+=..| ...|++++|+.++++-+.- ...+++-+..|..++..
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~-~lg~~~---~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHYD-AR-YFL-GLGACR---QSLGLYEQALQSYSYGALM-DINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHHH---HHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCcc-HH-HHH-HHHHHH---HHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Confidence 45677899999999998853333221 11 222 222223 3579999999999985432 23356666667666544
No 397
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=33.55 E-value=4.6e+02 Score=27.81 Aligned_cols=158 Identities=11% Similarity=0.028 Sum_probs=84.0
Q ss_pred ecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEE
Q 001311 355 HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434 (1102)
Q Consensus 355 spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~v 434 (1102)
-|+.. ++++.+.+|.|+--.+.+-+.... ....... .-....+.+..+........|+..+..|.++-
T Consensus 4 I~~e~-~~v~lT~~GyIKr~~l~~y~~~~r----------~g~g~~~-~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~ 71 (370)
T 3l6v_A 4 IAPED-VVVTLSHAGYAKRQPVSAYRAQRR----------GGRGRSA-ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 71 (370)
T ss_dssp CCCCC-EEEEEESSCEEEEEEHHHHHHTCC----------CCCCSEE-EECSCCCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred ccCCC-EEEEEeCCCEEEEeeHHHhhhhcc----------CCCCcee-cccCCCCEEEEEEEecCCCEEEEEeCCCeEEE
Confidence 35556 478888888888654422100000 0000000 11123567777777777788888888888776
Q ss_pred EEccC---------CceeeeEEEeeccccCEEEEEEcC---CCCeeEEEEecCCCcEEEEeCCC-------CeeeEEeec
Q 001311 435 YSYHG---------GDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATN-------GAKQYIFEG 495 (1102)
Q Consensus 435 wd~~~---------~~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~~~d~~i~vWd~~~-------~~~~~~~~~ 495 (1102)
+.... |..+.....+.. ...|.++.... ++. +|+.++..|.++...+.. |.....+..
T Consensus 72 ~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~--~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~ 148 (370)
T 3l6v_A 72 LPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNR--YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE 148 (370)
T ss_dssp EEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT
T ss_pred EEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCc--EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC
Confidence 65431 111111111222 34455544322 344 688888999999887642 222223332
Q ss_pred CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311 496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 530 (1102)
Q Consensus 496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1102)
.+.+..+... .. ...++..+.+|.+..+....
T Consensus 149 -~d~lv~v~~~-~~-~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 149 -GDALVGVALT-DG-DRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp -TCCEEEEEEE-CS-CCEEEEEETTSEEEEEEGGG
T ss_pred -CCEEEEEEEe-CC-CceEEEEeCCCeEEEEEccc
Confidence 3444444433 22 34677778888888887643
No 398
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=33.34 E-value=5.7e+02 Score=28.81 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=92.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEecCCe----------------------------EEEEeCCCCeeEEeeeeeeeccCCCC
Q 001311 345 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 396 (1102)
Q Consensus 345 h~~~v~~v~~spdg~~llasg~~d~~----------------------------i~iWd~~~~~~~~~~~~~~~~~~~~~ 396 (1102)
|-..+....|.-||+.=++..+.+|+ +.|+|=.||+.+....+..-.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~r----- 251 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPAR----- 251 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCC-----
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCC-----
Confidence 56678888888898776777777775 788888888887653331000
Q ss_pred ccccc-cccCCCCCC--eEEEEEc-cCCCeEEEEE---CCCeEEEEEccCCceeeeEEEeeccc-----------cCEEE
Q 001311 397 MPLQA-ALVKDPGVS--VNRVIWS-PDGSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHV-----------GGVND 458 (1102)
Q Consensus 397 ~~~~~-~~~~~h~~~--V~~l~~s-pdg~~las~~---~d~~v~vwd~~~~~~~~~~~~l~~h~-----------~~V~~ 458 (1102)
..... ---.++... ..++++- -+.-.++.+- ....|..||+.+++.. ..-.+.... ..+..
T Consensus 252 g~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~-~~W~~d~~~~~~~~~~gqg~h~~~v 330 (591)
T 2zux_A 252 GNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLS-KLWTLDSSKSGNEAFAGQGNHNLSI 330 (591)
T ss_dssp CCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEE-EEEEEETTSTTCGGGSSCCCSCCEE
T ss_pred CcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceE-EEEEecCCCCCcccccccCCCCCee
Confidence 00000 000001000 1222221 1111222221 1234777888776532 222222110 23444
Q ss_pred EEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecCCccEEEEEeCCC----eEEEEEcCCCCC
Q 001311 459 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNLGS 533 (1102)
Q Consensus 459 v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~ 533 (1102)
..+.-||+. -|+.|+. +.| ..|+.+... .+|...+....|.++..|.-++.+..++ -..+.|..+++.
T Consensus 331 aDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 331 ADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp ECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred EeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 556677776 3454441 344 445555443 3688777766676665566677766541 234567777666
Q ss_pred eeeec
Q 001311 534 RVDYE 538 (1102)
Q Consensus 534 ~~~~~ 538 (1102)
+....
T Consensus 404 lw~~~ 408 (591)
T 2zux_A 404 LWGVY 408 (591)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 65543
No 399
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=33.09 E-value=70 Score=28.91 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
.....|++++|+..+.+...++... .. +.+. .=.. +...|++++|+.++++-+.- ...+++-+..|..++..
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~-lg~~---~~~~g~~~~Ai~~~~~al~l-~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYN-VD-YIMG-LAAI---YQIKEQFQQAADLYAVAFAL-GKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHH-HHHH---HHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-HH-HHHH-HHHH---HHHHccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHH
Confidence 4567899999999998864433221 11 2221 1222 33579999999999985332 23356777777777654
No 400
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=32.94 E-value=1.1e+02 Score=34.56 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCeeEEEEecCCCeEEEEEec-----------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC-CCCeEEE
Q 001311 347 SSPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRV 414 (1102)
Q Consensus 347 ~~v~~v~~spdg~~llasg~~-----------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l 414 (1102)
.....|+|.++|..++.+-.. ...|..++..+++... ++.+. ...++.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~-------------------fl~~P~~aEpnGi 536 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-------------------FMVGPIGCEVTGI 536 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEE-------------------EEECCTTCEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEE-------------------EEeCCCCccccCC
Confidence 567789999999854434221 1256667776676543 23332 3579999
Q ss_pred EEccCCCeEEEE
Q 001311 415 IWSPDGSLFGVA 426 (1102)
Q Consensus 415 ~~spdg~~las~ 426 (1102)
+||||++.|.++
T Consensus 537 afSPD~ktLfV~ 548 (592)
T 4a9v_A 537 SFSPDQKTLFVG 548 (592)
T ss_dssp EECTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 999999998876
No 401
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.22 E-value=1e+02 Score=27.05 Aligned_cols=21 Identities=24% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HhHHHhcCCCHHHHHHHHHhh
Q 001311 68 KYLEALDKHDRAKAVEILVKD 88 (1102)
Q Consensus 68 ~~~Ell~~~~~~~a~~~l~~~ 88 (1102)
..-||+..++..+|.+|+++-
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 345777789999999999863
No 402
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=31.93 E-value=1.4e+02 Score=24.62 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHhccc
Q 001311 32 EVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~~ 48 (1102)
....|+|++|+..+...
T Consensus 19 ~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 44566666666666553
No 403
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=31.92 E-value=1e+02 Score=26.18 Aligned_cols=76 Identities=8% Similarity=-0.098 Sum_probs=43.1
Q ss_pred hHHHHHHHHhhhcCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHH
Q 001311 8 LFTSKHFLLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 82 (1102)
Q Consensus 8 g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~ 82 (1102)
-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...+..... . . +..+=.. +...|++++|+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~-~~~lg~~---~~~~~~~~~A~ 92 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-R-A-YIRKATA---QIAVKEYASAL 92 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-H-HHHHHHH---HHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-H-H-HHHHHHH---HHHHhCHHHHH
Confidence 355666655543222222 2223334578999999999887534332221 1 2 2222222 33479999999
Q ss_pred HHHHhhc
Q 001311 83 EILVKDL 89 (1102)
Q Consensus 83 ~~l~~~~ 89 (1102)
..+++-+
T Consensus 93 ~~~~~al 99 (126)
T 3upv_A 93 ETLDAAR 99 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999853
No 404
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.79 E-value=98 Score=28.08 Aligned_cols=21 Identities=24% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HhHHHhcCCCHHHHHHHHHhh
Q 001311 68 KYLEALDKHDRAKAVEILVKD 88 (1102)
Q Consensus 68 ~~~Ell~~~~~~~a~~~l~~~ 88 (1102)
..-||+..++..+|.+|+++-
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 345777789999999999863
No 405
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=31.16 E-value=85 Score=25.71 Aligned_cols=70 Identities=10% Similarity=-0.015 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001311 29 FEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ 105 (1102)
Q Consensus 29 ~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ 105 (1102)
=.-....|+|++|+..+.....+.... ..+.+.+- .. +...|++++|+..+.+.+.- ...+++-...|..
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a-~~---~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 114 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA-AA---LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HH---HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH-HH---HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 344566788888888887653332221 11222111 22 33468888888888875432 2224444444443
No 406
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=30.95 E-value=95 Score=24.80 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcc
Q 001311 29 FEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 90 (1102)
Q Consensus 29 ~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~ 90 (1102)
-......|+|++|+..+++.......... . .+..+=..|+ ..|++++|+..+++-+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~-~~~~lg~~~~---~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKD-E-AYYLMGNAYR---KLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHH-H-HHHHHHHHHH---HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHH-H-HHHHHHHHHH---HcCCHHHHHHHHHHHHh
Confidence 34567889999999999885333322111 0 1222223333 46999999999998543
No 407
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.92 E-value=1.1e+02 Score=28.74 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCH--------------HHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccc
Q 001311 26 MKYFEDEVHNGNW--------------DDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV 91 (1102)
Q Consensus 26 ~~~~~~~i~~g~w--------------~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~ 91 (1102)
+-+|-.-|.+|.= +.|+..+..++.-.+ .....+.-+|.+|..+=.+++|++.+|.++|.+.+..
T Consensus 68 icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 68 ICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 4466666777752 568888888744333 3444488899999999999999999999999986655
Q ss_pred ccccCHHHHHHHHHHhcccccccccccccCCCchhHHHHHHHHHHhhccc
Q 001311 92 FSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEA 141 (1102)
Q Consensus 92 l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~ 141 (1102)
...+...=..|..++-..+. .|..+.++ |=..++++|..++..
T Consensus 147 -~~~~~~lr~kL~~II~~Kd~-~H~~lqnF-----Sy~~~~~kik~fve~ 189 (211)
T 3bqo_A 147 -PNSHMPFKSKLLMIISQKDT-FHSFFQHF-----SYNHMMEKIKSYVNY 189 (211)
T ss_dssp ----CCTTHHHHHHHHHTTCT-TCHHHHHS-----CHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHccCC-CcHHHHHc-----cHHHHHHHHHHHHHH
Confidence 22233344467777766533 44444433 224555555555533
No 408
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.67 E-value=1.6e+02 Score=33.10 Aligned_cols=96 Identities=8% Similarity=-0.056 Sum_probs=57.0
Q ss_pred HhHHHHHHHHh--hhcCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHH
Q 001311 7 KLFTSKHFLLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 80 (1102)
Q Consensus 7 ~g~~~s~~~l~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~ 80 (1102)
..+.++...++ ++.|+..+ -.-++.....|++++|+.+++.+....-. ... .-|...-.-|. ..|+.++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~-~tyn~lI~~~~---~~g~~~~ 158 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRL-RSYGPALFGFC---RKGDADK 158 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCH-HHHHHHHHHHH---HTTCHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Ccc-ceehHHHHHHH---HCCCHHH
Confidence 34666766666 47898887 34567778889999999998876322110 011 34444444443 4788888
Q ss_pred HHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 81 AVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 81 a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
|++++.+....=-..+...|..|-..+
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888887632210112556666554333
No 409
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.80 E-value=4.9e+02 Score=26.95 Aligned_cols=190 Identities=8% Similarity=0.078 Sum_probs=105.0
Q ss_pred cCCCeEEEEe-CCeEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---------ce
Q 001311 816 KNDSYVMSAS-GGKISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DE 881 (1102)
Q Consensus 816 ~d~~~las~s-dg~I~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---------~~ 881 (1102)
|+..++++.+ +|.|+--.+...+. -..++. ...+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3455666666 88888776542211 112232 33454554444 456677778899877766532 22
Q ss_pred eeee---eccccccceeEEEecC---CCEEEEEcCCCcEEEEEcCCCcccc----eeeeecCCCCCCCCCCCcEEEEcc-
Q 001311 882 VKSK---LKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQK----NRFLQIPTGRTPTAQSDTRVQFHQ- 950 (1102)
Q Consensus 882 ~~~~---l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp- 950 (1102)
.+.. +. ....|.++..-++ +.+|+.++.+|.++...+....... ...+....+ ..+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 1111 11 2234665543333 6789999999999999876433211 112222222 2344444443
Q ss_pred CCcEEEEEeCCeEEEEEcCCceE-------eeeeccCCCCCCeeEEEEcCCCc-EEEEEeCCCeEEEEEcCC
Q 001311 951 DQIHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus 951 dg~~l~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~Dg~I~vwd~~~ 1014 (1102)
+...++.+.+|.+..+....-.. ++.+.... ...|.++..-+++. .|++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 44455557888888887654221 12222211 45566665544455 788888899988877754
No 410
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=28.82 E-value=1.1e+02 Score=25.57 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 108 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~ 108 (1102)
......|+|++|+..+.+........ . .++...=.-+...|++++|+.++.+.+.- ...+..-+..|+.+..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPAN--A----VYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCC--H----HHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHHHH
Confidence 45567899999999988753332221 1 11222222234579999999999986443 2224555666655543
No 411
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=28.73 E-value=1e+02 Score=27.52 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
......|+|++|+..+.....+.... .. +.+ -+=..| ...|++++|+.++++-+.- ...+++-+..|..++..
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~-~lg~~~---~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYD-SR-FFL-GLGACR---QAMGQYDLAIHSYSYGAVM-DIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHH-HHHHHH---HHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCccc-HH-HHH-HHHHHH---HHHhhHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 34567899999999998753333221 11 222 122222 3479999999999985432 22356667777666544
No 412
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=28.50 E-value=1.9e+02 Score=32.50 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=55.7
Q ss_pred HHHHHHHh--hhcCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHH
Q 001311 10 TSKHFLLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 83 (1102)
Q Consensus 10 ~~s~~~l~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 83 (1102)
.++.+.|+ ++.|+..+ -.-+......|++++|+++++.+.... -. -...-|...-..|. ..|+.++|++
T Consensus 122 ~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~-Pd~~ty~~Li~~~~---~~g~~d~A~~ 196 (501)
T 4g26_A 122 EMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VV-PEEPELAALLKVSM---DTKNADKVYK 196 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CC-CCHHHHHHHHHHHH---HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHh---hCCCHHHHHH
Confidence 44555554 36788877 345666778899999998888763221 11 11144544444443 3788888888
Q ss_pred HHHhhcccccccCHHHHHHHHHHh
Q 001311 84 ILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 84 ~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
+|++.-..-...++..|..|....
T Consensus 197 ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 197 TLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHH
Confidence 888632211233677777766554
No 413
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=28.50 E-value=1.2e+02 Score=25.56 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHhccccc-ccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccC---HHHHHHHHH
Q 001311 30 EDEVHNGNWDDVEKYLSGFTK-VDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFN---EELFKEITQ 105 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~---~~~~~~L~~ 105 (1102)
......|+|++|+..+..+.. .|.......+.|.+- .. ++..|++++|+..+.+-+.- ...+ ++-+..|..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg-~~---~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLG-ES---YYATRNFQLAEAQFRDLVSR-YPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHH-HH---HHHTTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHH-HH---HHHhccHHHHHHHHHHHHHH-CCCCcccHHHHHHHHH
Confidence 345678999999999887533 333321111333322 22 33579999999999885442 1213 444556655
Q ss_pred Hhc
Q 001311 106 LLT 108 (1102)
Q Consensus 106 ll~ 108 (1102)
+..
T Consensus 85 ~~~ 87 (129)
T 2xev_A 85 SQY 87 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 414
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=28.28 E-value=1.2e+02 Score=24.48 Aligned_cols=56 Identities=7% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcC-CCHHHHHHHHHhhcc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK-HDRAKAVEILVKDLK 90 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~-~~~~~a~~~l~~~~~ 90 (1102)
-....|+|++|+..+.+...+...... ..++...-.=++.. |+.++|+.+|++.+.
T Consensus 49 ~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 49 ALYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSCCTTC----HHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccch----HHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345789999999998875333222001 11222222234568 999999999997544
No 415
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.20 E-value=2.1e+02 Score=24.47 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhhcCCCcc--------HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHH
Q 001311 8 LFTSKHFLLEQESGFFFN--------MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRA 79 (1102)
Q Consensus 8 g~~~s~~~l~~Esg~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~ 79 (1102)
-|.++...+++=-.+..+ ...=......|+|++|+..+.....+.... ..+.+.+ =.. +...|+++
T Consensus 43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~-a~~---~~~~~~~~ 116 (148)
T 2dba_A 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRR-SQA---LEKLGRLD 116 (148)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHH-HHH---HHHHTCHH
T ss_pred CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHH-HHH---HHHcCCHH
Confidence 466666666654333322 122234567899999999988753332221 1122221 122 23469999
Q ss_pred HHHHHHHhhcccccccCHHHHHHHHHH
Q 001311 80 KAVEILVKDLKVFSTFNEELFKEITQL 106 (1102)
Q Consensus 80 ~a~~~l~~~~~~l~~~~~~~~~~L~~l 106 (1102)
+|+.++++-+.- ...+++....|..+
T Consensus 117 ~A~~~~~~al~~-~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 117 QAVLDLQRCVSL-EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHH-CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHH
Confidence 999999985433 22245555555544
No 416
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=27.52 E-value=1.5e+02 Score=23.90 Aligned_cols=54 Identities=6% Similarity=0.114 Sum_probs=33.9
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 90 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~ 90 (1102)
.....|+|++|+..+.+...+.... ..+.+ -+=.. ++..|++++|+..+++-+.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~-~lg~~---~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQN--PVGYS-NKAMA---LIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTC--HHHHH-HHHHH---HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC--HHHHH-HHHHH---HHHhcCHHHHHHHHHHHHH
Confidence 4467899999999888753332221 11222 22222 3457999999999998543
No 417
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=27.22 E-value=1.2e+02 Score=24.90 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHhccc
Q 001311 30 EDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~ 48 (1102)
.-....|++++|+..+...
T Consensus 51 ~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 51 NAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3445566777776666554
No 418
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.84 E-value=76 Score=37.08 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495 (1102)
Q Consensus 455 ~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~ 495 (1102)
.|.++.+ +.. ++++-+.|+++|+||+.+++++.+..-
T Consensus 223 ~Is~~~~--~~~--fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HER--YLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTT--EEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCc--EEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3665555 355 799999999999999999999887653
No 419
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=26.80 E-value=1.7e+02 Score=25.97 Aligned_cols=53 Identities=17% Similarity=-0.006 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDL 89 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~ 89 (1102)
-....|+|++|+..+.....+.... .. +.|. +=.. ++..|++++|+.++++.+
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~-~~-~~~~-lg~~---~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXE-PR-FPFH-AAEC---LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC-TH-HHHH-HHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCC-ch-HHHH-HHHH---HHHcCCHHHHHHHHHHHH
Confidence 4467899999999988753332221 11 2222 2222 345799999999999853
No 420
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=26.29 E-value=7.4e+02 Score=27.91 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=28.1
Q ss_pred cccCEEEEEEcCCCCeeEEEEecCCCc----------------------------EEEEeCCCCeeeEEee
Q 001311 452 HVGGVNDIAFSHPNKQLCVITCGDDKT----------------------------IKVWDATNGAKQYIFE 494 (1102)
Q Consensus 452 h~~~V~~v~~s~d~~~~~l~s~~~d~~----------------------------i~vWd~~~~~~~~~~~ 494 (1102)
|...+....|.-||+.- ++....+++ +.|+|=.+|+.+.++.
T Consensus 177 ~yt~~~V~DlDGDGkaE-Ivv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAE-VAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTAN 246 (591)
T ss_dssp TSCCCEEECSSSSSSCE-EEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEE
T ss_pred ccCceeEEEcCCCCcce-EEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEeccc
Confidence 55667777788888763 444434443 7888877888877653
No 421
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=26.00 E-value=6.1e+02 Score=26.87 Aligned_cols=199 Identities=10% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCeEEEEECCCeEEEEEccCCce--------eeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---
Q 001311 420 GSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--- 487 (1102)
Q Consensus 420 g~~las~~~d~~v~vwd~~~~~~--------~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~--- 487 (1102)
....+.-..||.|..|-...... ......+.. ....+..++.+.-.. ..+.-..||.|..|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGGTT
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCCcC
Confidence 44555567788888885432111 111111111 122455566665555 3455567899999964321
Q ss_pred --------eeeEEeec-CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311 488 --------AKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558 (1102)
Q Consensus 488 --------~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 558 (1102)
.....+.. ....|..++. .. ...+.-..||.|..|=......+-.-.. .. . ..| ..+.
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~---G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~-~----~~p---~~v~ 206 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAA---GG-AHSACVTAAGDLYTWGKGRYGRLGHSDS-ED-Q----LKP---KLVE 206 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEE---CS-SEEEEEETTSCEEEEECCGGGTTCSSSC-CC-E----EEE---EECG
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEe---Cc-CeEEEEeCCCeEEEeCCCCCCCcCCCCC-cc-c----ccc---eEec
Confidence 01112221 1224655542 22 3556667789999996543222110000 00 0 000 1111
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-c----------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-Q----------LLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627 (1102)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 627 (1102)
......+..++......+.++...||.|+.|-.... + ....+..... ..|..++. -....++-+.+
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~~--G~~hs~alt~~ 283 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVEC--GSQFSVALTKS 283 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEEE--ETTEEEEEETT
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEeC--CCCEEEEEeCC
Confidence 112223444444433356677788999999965321 1 0111111111 12433443 33445555789
Q ss_pred CcEEEEEcc
Q 001311 628 NGIKILATS 636 (1102)
Q Consensus 628 g~i~iwd~~ 636 (1102)
|.|+.|-..
T Consensus 284 G~v~~wG~n 292 (389)
T 3kci_A 284 GAVYTWGKG 292 (389)
T ss_dssp SCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999753
No 422
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=25.96 E-value=1.5e+02 Score=24.78 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHhcccccc-cCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcc
Q 001311 32 EVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 90 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~ 90 (1102)
....|+|++|+..+.....+ +...........++-..=.-+...|++++|+.++.+.+.
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 48 YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34578888888777664222 111000000011222222223346788888888876433
No 423
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=25.95 E-value=5.8 Score=33.72 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHhhhcCCCccHHHHHHHHhcCCHHHHHHHhccc
Q 001311 12 KHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 12 s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 48 (1102)
..+.|+ |||+.+++.-+-..| +|+||+++..++..
T Consensus 30 ~i~vl~-~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 64 (109)
T 1yqh_A 30 AIEVVQ-QSGVRYEVGAMETTL-EGELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHH-HSCSEEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 344554 799999866666655 49999999998874
No 424
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=25.72 E-value=1.3e+02 Score=25.64 Aligned_cols=73 Identities=7% Similarity=-0.008 Sum_probs=44.2
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
......|+|++|+..+.....+.... . ..+..+=.. ++..|++++|+..+++.+.- ...+..-+..|..++..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~--~-~~~~~l~~~---~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 89 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPLV--A-VYYTNRALC---YLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLE 89 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--H-HHHHHHHHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcCc--H-HHHHHHHHH---HHHhcCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHH
Confidence 45678999999999888753333221 1 112222222 33579999999999985443 23356666666666544
No 425
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=25.55 E-value=2e+02 Score=23.74 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
.-....|+|++|+..+.......... ..+.+.+- .. +...|+.++|+.++.+.+.- ...+..-+..|..+.
T Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~-~~---~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 54 AAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMG-LA---LSSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAE 124 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-HH---HHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHH-HH---HHHhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHH
Confidence 34567899999999988753332221 11222221 12 33579999999999875432 222445455554443
No 426
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=25.26 E-value=1.1e+02 Score=31.13 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHhcc
Q 001311 33 VHNGNWDDVEKYLSG 47 (1102)
Q Consensus 33 i~~g~w~~~~~~l~~ 47 (1102)
+..|++++|+..+.+
T Consensus 128 ~~~g~~~~A~~~~~~ 142 (287)
T 3qou_A 128 MQESNYTDALPLLXD 142 (287)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHH
Confidence 444555555555444
No 427
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=25.20 E-value=4.9 Score=33.85 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHhhhcCCCccHHHHHHHHhcCCHHHHHHHhccc
Q 001311 12 KHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 12 s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 48 (1102)
..+.|+ |||+.+++.-+-..| +|+||+++..++..
T Consensus 25 ~i~vl~-~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 59 (104)
T 2ibo_A 25 VIAYLQ-TQEVTMVVTPFETVL-EGEFDELMRILKEA 59 (104)
T ss_dssp HHHHHH-HSSSEEEECSSCEEE-EEEHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 344554 799999876666666 49999999998875
No 428
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=24.42 E-value=5.3 Score=33.44 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHhhhcCCCccHHHHHHHHhcCCHHHHHHHhccc
Q 001311 12 KHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 12 s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 48 (1102)
..+.|+ |||+.+++.-+-..| +|+||+++..++..
T Consensus 29 ~i~~l~-~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (100)
T 2epi_A 29 AIEVFK-KYDLKVETNAMGTVL-EGDLDEILKAFKEA 63 (100)
T ss_dssp HHHHHT-TSSCEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 444554 899999866666655 49999999998765
No 429
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.32 E-value=2e+02 Score=31.40 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccC------HHH
Q 001311 26 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFN------EEL 99 (1102)
Q Consensus 26 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~------~~~ 99 (1102)
+..+|-.+..|||..|..++.+...+.........+--+..+.=+=++..+++..|...+.+.+.-+.... ...
T Consensus 172 l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~ 251 (429)
T 4b4t_R 172 LTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIAT 251 (429)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHH
Confidence 77889999999999999999886433222111112222333444445678999998888876433322211 334
Q ss_pred HHHHHHHhccc
Q 001311 100 FKEITQLLTLE 110 (1102)
Q Consensus 100 ~~~L~~ll~~~ 110 (1102)
|.-|+.+++.+
T Consensus 252 y~~l~al~~~~ 262 (429)
T 4b4t_R 252 YASVTGLFTLE 262 (429)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhcCC
Confidence 56667776654
No 430
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.94 E-value=6.7e+02 Score=26.57 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=55.9
Q ss_pred CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce-----------eeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311 808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT-----------MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875 (1102)
Q Consensus 808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~-----------~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 875 (1102)
.|..++... ...++...+|.|+.|-....-+ ...+.. ....|..++... +....+.-..||.|+.|
T Consensus 160 ~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAAGG-AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEECS-SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEE
T ss_pred eEEEEEeCc-CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEE
Confidence 455554432 2233344478888887543111 111111 123466666543 33556666789999999
Q ss_pred Eeecc-e----------eeeeeccc-cccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311 876 NVRVD-E----------VKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 921 (1102)
Q Consensus 876 d~~~~-~----------~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~ 921 (1102)
-.... + ....+..- ...|..|+.. ....+....||.|..|-...
T Consensus 238 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCG
T ss_pred eCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCC
Confidence 75431 1 11111111 1235555554 33445556889999997543
No 431
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=23.89 E-value=8.6 Score=32.39 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHhhhcCCCccHHHHHHHHhcCCHHHHHHHhccc
Q 001311 13 HFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 48 (1102)
Q Consensus 13 ~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 48 (1102)
+..+=+|||+.+++.-+-..| +|+||++++.++..
T Consensus 38 ~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 38 AIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 333445799999977776666 49999999998875
No 432
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=23.73 E-value=2e+02 Score=27.46 Aligned_cols=75 Identities=15% Similarity=0.008 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHhccccc-ccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccccccc--CHHHHHHHHHHh
Q 001311 32 EVHNGNWDDVEKYLSGFTK-VDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTF--NEELFKEITQLL 107 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~--~~~~~~~L~~ll 107 (1102)
....|++++|+..++.... .|.+......+..+|...=.-+...|++++|+..+++-+.- ... +.+-+..|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-CCCcccHHHHHHHHHHH
Confidence 4566888888888877423 23221000001112222222234578999999999886543 222 234444555444
No 433
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=23.73 E-value=1.6e+02 Score=33.78 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=36.3
Q ss_pred EEEcCCCCEEEEEeC------------CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311 568 VQFDTTKNRFLAAGD------------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 624 (1102)
Q Consensus 568 ~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 624 (1102)
|+|++.|+++++-.. .+.+.+.+..+++....+..... .+++.++|+||++.|++.
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g-aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG-CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT-CEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC-ccCcCeeECCCCCEEEEE
Confidence 556666665554322 13456667777776666655433 478999999999888765
No 434
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=23.10 E-value=2.3e+02 Score=23.44 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
-....|+|++|+..+.......... ..+.+ .+-+. +...|++++|+..+.+.+.- ...+.+.+..|..+.
T Consensus 44 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~-~l~~~---~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 44 AYYKQGDYDEAIEYYQKALELDPRS--AEAWY-NLGNA---YYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAY 113 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTC--HHHHH-HHHHH---HHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCc--hHHHH-HHHHH---HHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 3456788988888887753332221 10111 11112 33568888888888875432 122344444454443
No 435
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=22.78 E-value=2.1e+02 Score=28.09 Aligned_cols=55 Identities=7% Similarity=-0.119 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhh
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD 88 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~ 88 (1102)
-....|+|++|+..+......+.... .....+...=.-+...|++++|+..+.+-
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATK---AKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55667888888777766433332211 11111222222223356777777777664
No 436
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=22.77 E-value=1.8e+02 Score=23.90 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHhcc-cccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhc
Q 001311 31 DEVHNGNWDDVEKYLSG-FTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDL 89 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~-~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~ 89 (1102)
.+...|+|+.|+.-+.. +...+.........-.|+.+-=.-+...|++..|+..+++.+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45678999999887765 322211110000223455544444556899999999998853
No 437
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=22.42 E-value=2e+02 Score=25.83 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=8.4
Q ss_pred HHhcCCHHHHHHHhcc
Q 001311 32 EVHNGNWDDVEKYLSG 47 (1102)
Q Consensus 32 ~i~~g~w~~~~~~l~~ 47 (1102)
....|++++|+.++.+
T Consensus 52 ~~~~~~~~~A~~~~~~ 67 (186)
T 3as5_A 52 YVKTGAVDRGTELLER 67 (186)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3445555555555544
No 438
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=22.23 E-value=1.3e+02 Score=27.08 Aligned_cols=75 Identities=16% Similarity=0.034 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhcCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHH
Q 001311 9 FTSKHFLLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 83 (1102)
Q Consensus 9 ~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~ 83 (1102)
|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...+.... ..+ +..+=..| ...|++++|+.
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~-~~~lg~~~---~~~g~~~~A~~ 100 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKA-WSRLGLAR---FDMADYKGAKE 100 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH-HHHHHHHH---HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHH-HHHHHHHH---HHccCHHHHHH
Confidence 55555555543222222 222334567899999999988853443332 112 22222233 34799999999
Q ss_pred HHHhhc
Q 001311 84 ILVKDL 89 (1102)
Q Consensus 84 ~l~~~~ 89 (1102)
++++.+
T Consensus 101 ~~~~al 106 (164)
T 3sz7_A 101 AYEKGI 106 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998743
No 439
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=22.01 E-value=2.1e+02 Score=27.72 Aligned_cols=73 Identities=7% Similarity=0.007 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
.-....|+|++|+..+.......... . .++...-.=++..|++++|+.++.+.+.- ...+.+.+..|..+...
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~--~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPED--A----RGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCccc--H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 34567899999999888753332221 1 12222222234579999999999886443 22245666666655543
No 440
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=21.84 E-value=3.8e+02 Score=25.72 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 107 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll 107 (1102)
.-....|+|++|+.++.+....+..... ..++...-.-++..|+.++|+.++++.+.- ...+..-+..|+.+.
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPER----SRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHH
Confidence 3455678888888877765231111101 111111111233467777787777764332 122344444444443
No 441
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=21.76 E-value=3e+02 Score=24.47 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDL 89 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~ 89 (1102)
......|+|++|+..+.......... ..++...-.-++..|+.++|+.++.+.+
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556789999999888763332221 1122222223345788888888888743
No 442
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=21.67 E-value=1.4e+02 Score=24.66 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhc
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDL 89 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~ 89 (1102)
-....|+|++|+..+.....+.... .. . +..+=..| ...|++++|+..+++-+
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p~~-~~-~-~~~la~~~---~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDPTY-SV-A-WKWLGKTL---QGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HH-H-HHHHHHHH---HHHTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCc-HH-H-HHHHHHHH---HHcCCHHHHHHHHHHHH
Confidence 3467899999999988753333221 11 2 22222223 33699999999998753
No 443
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=21.54 E-value=1.3e+02 Score=28.66 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHHHHHHHhcccccccCccccchhhHH------------HHHhHhHHHhcCCCHHHHHHHHHhhccccccc
Q 001311 28 YFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFE------------IRKQKYLEALDKHDRAKAVEILVKDLKVFSTF 95 (1102)
Q Consensus 28 ~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~------------i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~ 95 (1102)
.-...+..|+|++|+..+.+...+.... .. +.|. +..+.=.-+...|++++|+..+++-+.- ...
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDR-TE-MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-APN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHH-HH-HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hH-HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC
Confidence 3345667888888888877642222111 11 2222 0011222234568888888888875432 222
Q ss_pred CHHHHHHHHHHhc
Q 001311 96 NEELFKEITQLLT 108 (1102)
Q Consensus 96 ~~~~~~~L~~ll~ 108 (1102)
+.+-+..|..++.
T Consensus 87 ~~~~~~~lg~~~~ 99 (208)
T 3urz_A 87 NVDCLEACAEMQV 99 (208)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4555566655553
No 444
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=21.48 E-value=2.2e+02 Score=24.64 Aligned_cols=52 Identities=15% Similarity=-0.045 Sum_probs=33.2
Q ss_pred HHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhh
Q 001311 31 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD 88 (1102)
Q Consensus 31 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~ 88 (1102)
-....|+|++|+..+.....+..... . +.| -+=.. ++..|++++|+.++++-
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~-~-~~~-~lg~~---~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEP-R-FPF-HAAEC---HLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCT-H-HHH-HHHHH---HHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCc-H-HHH-HHHHH---HHHcCCHHHHHHHHHHH
Confidence 35678999999999887533332211 1 222 22223 33579999999999874
No 445
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=21.47 E-value=83 Score=26.44 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHhcccccc-cCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccc
Q 001311 30 EDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV 91 (1102)
Q Consensus 30 ~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~ 91 (1102)
.-....|+|++|+..+.+...+ |+.. . +.+ .+=.. +...|++++|+..|++.+..
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~~--~-~~~-~l~~~---~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNHQ--A-LRV-FYAMV---LYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHH-HHHHH---HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCch--H-HHH-HHHHH---HHHcCCHHHHHHHHHHHHHh
Confidence 3456789999999999885333 3331 1 222 22233 33479999999999986543
No 446
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=21.17 E-value=1.4e+02 Score=26.52 Aligned_cols=95 Identities=8% Similarity=-0.049 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhhcCCCcc-----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHH
Q 001311 8 LFTSKHFLLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 82 (1102)
Q Consensus 8 g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~ 82 (1102)
-|.++...+++=-.+..+ ...=.-....|+|++|+..+.+...+.... .. +.+.+ =..|+ ..++..+|.
T Consensus 46 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~-~~~~l-a~~~~---~~~~~~~aa 119 (150)
T 4ga2_A 46 EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ-KD-LVLKI-AELLC---KNDVTDGRA 119 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HHHHH---HHCSSSSHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HH-HHHHH-HHHHH---HcCChHHHH
Confidence 356666666553333332 112223456899999999988753333221 11 22222 22222 357776655
Q ss_pred HH-HHhhcccccccCHHHHHHHHHHhcc
Q 001311 83 EI-LVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 83 ~~-l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
+. +.+-++ +..-+++-+..+..|+..
T Consensus 120 ~~~~~~al~-l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 120 KYWVERAAK-LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHH-HSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hCcCCHHHHHHHHHHHHH
Confidence 54 554322 233367777777777765
No 447
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=21.10 E-value=2.4e+02 Score=26.84 Aligned_cols=77 Identities=10% Similarity=0.246 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCC----HH------HHHHHhcc-cccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccc
Q 001311 26 MKYFEDEVHNGN----WD------DVEKYLSG-FTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFST 94 (1102)
Q Consensus 26 ~~~~~~~i~~g~----w~------~~~~~l~~-~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~ 94 (1102)
++.|++.+..|. ++ .+-..|+. |..+|+.. +-+.+|+ .|++.....+.++.+..++..+..|-.
T Consensus 48 i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePL----i~~~l~~-~~~~~~~~~~~~~~~~~l~~ll~~LP~ 122 (201)
T 2ovj_A 48 VKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPL----LTFRLNR-AFMEAAEITDEDNSIAAMYQAVGELPQ 122 (201)
T ss_dssp HHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCT----TCTTTHH-HHHHHHHCSSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCC----CCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHCCH
Confidence 889999998773 21 12223333 23556554 3344554 577777777666666666654444433
Q ss_pred cCHHHHHHHHHHh
Q 001311 95 FNEELFKEITQLL 107 (1102)
Q Consensus 95 ~~~~~~~~L~~ll 107 (1102)
.+...++.|..+|
T Consensus 123 ~n~~~L~~L~~~L 135 (201)
T 2ovj_A 123 ANRDTLAFLMIHL 135 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 448
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=20.48 E-value=44 Score=28.25 Aligned_cols=69 Identities=13% Similarity=-0.062 Sum_probs=38.5
Q ss_pred cCCHHHHHHHhccccccc--CccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcc
Q 001311 35 NGNWDDVEKYLSGFTKVD--DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 109 (1102)
Q Consensus 35 ~g~w~~~~~~l~~~~~~~--~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~ 109 (1102)
.|++++|+..+.+...+. +.. ...++-..=.=++..|++++|+.++++-+.- ...+++-+..|..++..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHH
Confidence 588889988887753431 111 1122222223345689999999999986443 22356667777666644
No 449
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=20.33 E-value=2.8e+02 Score=26.63 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCC--------HH---HHHHHhcc-cccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhccccc
Q 001311 26 MKYFEDEVHNGN--------WD---DVEKYLSG-FTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFS 93 (1102)
Q Consensus 26 ~~~~~~~i~~g~--------w~---~~~~~l~~-~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~ 93 (1102)
++.|++.+..|. |. .+-..|+. |..+|+.. +-+.+|+ .|++.....+..+.+..++..+..|-
T Consensus 66 i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePL----l~~~l~~-~~~~~~~~~~~~~~~~~l~~ll~~LP 140 (214)
T 3byi_A 66 IQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPL----FPYSFFE-QFVEAIKKQDNNTRIEAVKSLVQKLP 140 (214)
T ss_dssp HHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCS----SCHHHHH-HHHHHHTSSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCC----CCHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 788888887763 31 12233333 34566664 3355664 47777777676665555555444433
Q ss_pred ccCHHHHHHHHHHh
Q 001311 94 TFNEELFKEITQLL 107 (1102)
Q Consensus 94 ~~~~~~~~~L~~ll 107 (1102)
..+...++.|..+|
T Consensus 141 ~~n~~~L~~L~~~L 154 (214)
T 3byi_A 141 PPNRDTMKVLFGHL 154 (214)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555555554
No 450
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.04 E-value=2.8e+02 Score=26.71 Aligned_cols=56 Identities=5% Similarity=-0.146 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcc
Q 001311 29 FEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLK 90 (1102)
Q Consensus 29 ~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~ 90 (1102)
-.-....|+|++|+..+.....+.... . .++...-.-++..|++++|+.++.+.+.
T Consensus 78 a~~~~~~~~~~~A~~~~~~a~~~~~~~--~----~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 78 AVVFQTEMEPKLADEEYRKALASDSRN--A----RVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCc--H----HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344567899999999988753332221 1 1122222223457999999999998766
Done!