Query 001312
Match_columns 1102
No_of_seqs 314 out of 1087
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3doa_A Fibrinogen binding prot 100.0 2.5E-43 8.5E-48 392.1 26.7 263 6-365 3-280 (288)
2 3twl_A Formamidopyrimidine-DNA 95.6 0.34 1.2E-05 54.2 17.8 50 239-291 170-222 (310)
3 2xzf_A Formamidopyrimidine-DNA 94.9 0.48 1.7E-05 51.9 16.2 50 239-291 155-207 (271)
4 1ee8_A MUTM (FPG) protein; bet 93.8 1.3 4.3E-05 48.4 16.3 50 239-291 145-197 (266)
5 1k82_A Formamidopyrimidine-DNA 93.6 1.3 4.5E-05 48.4 16.1 50 239-291 152-204 (268)
6 3u6p_A Formamidopyrimidine-DNA 93.0 1.2 4E-05 48.9 14.6 50 239-291 157-209 (273)
7 3r8n_M 30S ribosomal protein S 85.9 1.3 4.4E-05 42.3 6.4 46 239-287 13-58 (114)
8 3j20_O 30S ribosomal protein S 81.6 2.3 7.9E-05 42.3 6.4 47 239-288 20-66 (148)
9 3iz6_M 40S ribosomal protein S 80.8 2.5 8.5E-05 42.3 6.4 47 238-287 24-70 (152)
10 2xzm_M RPS18E; ribosome, trans 79.8 2.9 9.8E-05 42.0 6.5 48 239-289 27-74 (155)
11 2vqe_M 30S ribosomal protein S 79.2 1.7 6E-05 42.1 4.5 48 239-289 14-61 (126)
12 3u5c_S 40S ribosomal protein S 76.3 2.7 9.4E-05 41.7 5.1 45 240-287 28-72 (146)
13 3vk8_A Probable formamidopyrim 74.6 4.3 0.00015 44.9 6.8 51 238-291 155-209 (295)
14 3w0f_A Endonuclease 8-like 3; 71.9 5.7 0.0002 43.7 6.8 51 239-292 176-229 (287)
15 1k3x_A Endonuclease VIII; hydr 70.1 5.1 0.00017 43.5 5.9 50 239-291 152-204 (262)
16 1mu5_A Type II DNA topoisomera 43.5 1.1E+02 0.0038 35.8 11.5 51 239-292 254-305 (471)
17 1gmj_A ATPase inhibitor; coile 37.2 1.6E+02 0.0056 26.4 8.7 51 350-408 21-72 (84)
18 1tdh_A NEI endonuclease VIII-l 34.8 13 0.00043 42.4 1.5 35 238-272 159-196 (364)
19 3o71_B Peptide of deleted in c 24.8 26 0.0009 24.4 1.1 13 586-598 7-19 (27)
No 1
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-43 Score=392.15 Aligned_cols=263 Identities=19% Similarity=0.277 Sum_probs=195.7
Q ss_pred CCHHHHHHHHHHHhhhcCCceeEEEecCCCEEEEEEecCCCCccCCCCceEEEEEecc---ceEEeccccCCCCCCCCHH
Q 001312 6 MNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESG---VRLHTTAYARDKKNTPSGF 82 (1102)
Q Consensus 6 msslDv~aiv~EL~~L~G~RI~nIY~~~~~~~llk~~~~~g~~~~g~~~k~~LliesG---~RiHlT~~~r~k~~~Ps~F 82 (1102)
||++||++++.||..|+|+||.||||+++++++|+|++++ ++..|+|+.+ +|||+|++.+++|..||+|
T Consensus 3 ~d~~~l~a~~~EL~~l~g~ri~kIyq~~~~~l~l~l~~~~--------~~~~L~ls~~p~~~ri~lt~~~~~~p~~p~~F 74 (288)
T 3doa_A 3 YDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNR--------QNHQLLLSIHPNFSRLQLTTKKYDNPFNPPMF 74 (288)
T ss_dssp SCHHHHHHHHHHHGGGTTCEEEEEEEEETTEEEEEEEETT--------EEEEEEEECCTTTCEEEEECC-------CCHH
T ss_pred ccHHHHHHHHHHHHhhhCceEEEEEcCCCcEEEEEEEcCC--------CceEEEEEECCCceEEEEcCCCCCCCCCCcHH
Confidence 8999999999999669999999999999999999999864 3556666544 9999999999999999999
Q ss_pred HHHHHHHccCCceeEEEeeCCCeEEEEEEeeCC----c-eEEEEEEeccC-ceEEEEcCCCceEeeecccccC-CCcccc
Q 001312 83 TLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGM----N-AHYVILELYAQ-GNILLTDSEFTVLTLLRSHRDD-DKGVAI 155 (1102)
Q Consensus 83 ~m~LRKhL~g~RL~~V~Q~g~DRII~~~F~~G~----~-~~~LilEL~gr-gNIILtD~e~~IL~~lR~v~~~-~~~~~i 155 (1102)
||.|||||+|+||++|+|+|+||||.|+|+.++ . .|+||+||||+ |||||||++++||+++|+++.. .+.|.|
T Consensus 75 ~m~LRk~L~g~ri~~i~Q~~~DRIv~~~f~~~~e~g~~~~~~Li~El~gr~SNiIL~d~~~~Il~~lr~v~~~~~~~R~i 154 (288)
T 3doa_A 75 ARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTV 154 (288)
T ss_dssp HHHHHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGCEEEEEETTCBEEEESSCBCC-----CCB
T ss_pred HHHHHHHhCCCEEEEEEECCCceEEEEEEeeccccCCccceEEEEEEcCCCceEEEEcCCCcEeeeeeccCcccccccee
Confidence 999999999999999999999999999999743 2 79999999999 6999999999999999999874 345789
Q ss_pred ccCCcccCccccc-cccC--ChhhHHHhhccCCCCCCCCCCCccCCCCCcccccccccCCCCCCCccccccccCCCCCCC
Q 001312 156 MSRHRYPTEICRV-FERT--TASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDG 232 (1102)
Q Consensus 156 ~~g~~Yp~~~~~~-~~p~--~~~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 232 (1102)
.+|.+|.+|+.+. .+|+ +.+.+.+.+.
T Consensus 155 ~pG~~Y~~Pp~~~k~~p~~~~~e~~~~~l~-------------------------------------------------- 184 (288)
T 3doa_A 155 MPGFNYEAPPTQHKINPYDITGAEVLKYID-------------------------------------------------- 184 (288)
T ss_dssp STTSBCCCCCCCCCBCGGGCCHHHHGGGCC--------------------------------------------------
T ss_pred cCCCcccCCccccCCCcccCCHHHHHHHHh--------------------------------------------------
Confidence 9999997776532 3343 2333332221
Q ss_pred ccCCchhHHHHHh-hhcCCCHHHHHHH-HHHcCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEE
Q 001312 233 ARAKQPTLKTVLG-EALGYGPALSEHI-ILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYIL 310 (1102)
Q Consensus 233 ~~~~~~~lk~~L~-~~~g~gp~laeei-~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~~~~~~~l~~~~~~p~gyi~ 310 (1102)
.....+.+.|. .+.||||.+++|+ |+|+|.+. ..|+.+ +.++++.+.. ...|. ++
T Consensus 185 --~~~~~l~~~l~~~~~G~s~~la~El~~~ra~~~~---------------~~l~~~---~~~~~~~~~~-~~~p~--i~ 241 (288)
T 3doa_A 185 --FNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTS---------------STLPEA---FDEVMAETKL-PPTPI--FH 241 (288)
T ss_dssp --GGGCCHHHHHHHHBTTCCHHHHHHHHTTSSSCST---------------THHHHH---HHHHHHHHTS-CCCCE--EC
T ss_pred --hCcchHHHHHHHHcCCCCHHHHHHHHHHHcCCcH---------------HHHHHH---HHHHHHHhhc-CCCcE--EE
Confidence 01122444454 5569999999999 99998531 233444 5666777764 33343 31
Q ss_pred ecccCCCCCCCCCCCCCCCccceeeeeccccccccccccccccHHHHHHHHHHHH
Q 001312 311 MQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKI 365 (1102)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~y~~F~Pf~l~q~~~~~~~~f~sfn~avDeffs~~ 365 (1102)
..+ . ....+|+||++.+|.+ ....|+|||+|||+||...
T Consensus 242 -~~~-~-------------~~~~~f~~~~l~~~~~-~~~~f~s~s~~Ld~yy~~k 280 (288)
T 3doa_A 242 -KNH-E-------------TGKEDFYFIKLNQFND-DTVTYDSLNDLLDRFYDAR 280 (288)
T ss_dssp --CT-T-------------TCCCCEESSCCTTCCS-CCEECSSHHHHHHHHTCC-
T ss_pred -eCC-C-------------CCceEEEEEechhccC-CceeCCCHHHHHHHHHHHh
Confidence 210 0 0235899999999876 6678999999999999875
No 2
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=95.58 E-value=0.34 Score=54.15 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=40.5
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .|+.+++..|+.++..+
T Consensus 170 ~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~---~Ls~~e~~~L~~~i~~v 222 (310)
T 3twl_A 170 TIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTAS---SLSKEQCEALHTSIKEV 222 (310)
T ss_dssp BHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555554 24599999999999999999998776 58899999999886544
No 3
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=94.92 E-value=0.48 Score=51.88 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .++.+++..|+.++..+
T Consensus 155 ~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 207 (271)
T 2xzf_A 155 KIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETN---QLIESSIHLLHDSIIEI 207 (271)
T ss_dssp BHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555554 24599999999999999999998776 58899999999886543
No 4
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=93.78 E-value=1.3 Score=48.45 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .++.+++..|+.++..+
T Consensus 145 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~---~Ls~~~~~~L~~~i~~v 197 (266)
T 1ee8_A 145 PLKALLLDQRLAAGVGNIYADEALFRARLSPFRPAR---SLTEEEARRLYRALREV 197 (266)
T ss_dssp BHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555553 24599999999999999999998776 58899999999886543
No 5
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=93.62 E-value=1.3 Score=48.36 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=40.5
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .++.+++..|+.++..+
T Consensus 152 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 204 (268)
T 1k82_A 152 AIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLAS---SLSLAECELLARVIKAV 204 (268)
T ss_dssp BHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555553 24599999999999999999998776 58899999999886543
No 6
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=93.02 E-value=1.2 Score=48.87 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .++.+++..|+.++..+
T Consensus 157 ~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~---~Ls~~~~~~L~~~i~~v 209 (273)
T 3u6p_A 157 SVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAA---SLSSKEIERLHEEMVAT 209 (273)
T ss_dssp BHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGG---GCCHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCccccccHHHHHHHHHHcCCCccCccc---cCCHHHHHHHHHHHHHH
Confidence 4555553 24599999999999999999998776 58899999999886533
No 7
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=85.88 E-value=1.3 Score=42.30 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=39.6
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 001312 239 TLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (1102)
Q Consensus 239 ~lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~a 287 (1102)
.+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~---~Lt~~ei~~l~~~ 58 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDVKIS---ELSEGQIDTLRDE 58 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCST---TCCHHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcc---cCCHHHHHHHHHH
Confidence 466778888999999999999999999998877 5899998876544
No 8
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.57 E-value=2.3 Score=42.33 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=40.7
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHH
Q 001312 239 TLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAV 288 (1102)
Q Consensus 239 ~lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al 288 (1102)
.+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...|
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~i~~~i 66 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAGLDPFMKAG---YLTDEQVKKIEEIL 66 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTT---BCCHHHHHHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHhCCCCCceec---cCCHHHHHHHHHHH
Confidence 467778889999999999999999999998877 58999998876554
No 9
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=80.80 E-value=2.5 Score=42.27 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=40.2
Q ss_pred hhHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 001312 238 PTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (1102)
Q Consensus 238 ~~lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~a 287 (1102)
..+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~l~~~ 70 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAG---ELSAEEMDRLMAV 70 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTT---TSCHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeC---cCCHHHHHHHHHH
Confidence 3567788889999999999999999999998877 5899998776544
No 10
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=79.82 E-value=2.9 Score=41.95 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=41.0
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHH
Q 001312 239 TLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVA 289 (1102)
Q Consensus 239 ~lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~ 289 (1102)
.+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...|.
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~---~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLKIDPNARAG---LLTEDQCNKITDLIA 74 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSS---CSCHHHHHHHHHHHH
T ss_pred EEEEeeecccccCHHHHHHHHHHcCCCcccccc---cCCHHHHHHHHHHHh
Confidence 466778889999999999999999999998877 589999988766543
No 11
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=79.18 E-value=1.7 Score=42.06 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=41.3
Q ss_pred hHHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHH
Q 001312 239 TLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVA 289 (1102)
Q Consensus 239 ~lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~ 289 (1102)
.+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...|.
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~---~Lt~~ei~~l~~~i~ 61 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTGINPATRVK---DLTEAEVVRLREYVE 61 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGG---GCCHHHHHHHHHHHH
T ss_pred EeeeehhccccccHHHHHHHHHHcCCCcccccC---cCCHHHHHHHHHHHH
Confidence 466778889999999999999999999998877 589999988776654
No 12
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=76.28 E-value=2.7 Score=41.69 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=37.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHH
Q 001312 240 LKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLA 287 (1102)
Q Consensus 240 lk~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~a 287 (1102)
+..+|..+.|+|+..+..+|..+|++++.++. +|+++++..|...
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g---~Lt~~ei~~l~~~ 72 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHKRAG---ELTQEELERIVQI 72 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSS---SCCHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCceec---cCCHHHHHHHHHH
Confidence 34457788899999999999999999998877 5899998776544
No 13
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=74.62 E-value=4.3 Score=44.90 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=41.1
Q ss_pred hhHHHHHh---h-hcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 238 PTLKTVLG---E-ALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 238 ~~lk~~L~---~-~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
..++.+|. . +.|+|..++.|+|++|||.|..+.. .|+.+++..|+.++..+
T Consensus 155 ~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~---~Ls~~~~~~L~~~i~~v 209 (295)
T 3vk8_A 155 QPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGS---NLTDQEIENLWYWIKYE 209 (295)
T ss_dssp SBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGG---GCCHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccc---cCCHHHHHHHHHHHHHH
Confidence 35666654 3 4599999999999999999998776 58899999999886543
No 14
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=71.88 E-value=5.7 Score=43.72 Aligned_cols=51 Identities=29% Similarity=0.414 Sum_probs=41.9
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFE 292 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~~ 292 (1102)
.++.+|. .+.|+|..+++|+|+++||.|..+.. .|+++++..|+.++..+-
T Consensus 176 ~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~---~Ls~~~~~~L~~ai~~Vl 229 (287)
T 3w0f_A 176 MLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVC---QLSDKQACHLVKMTRDFS 229 (287)
T ss_dssp BHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGG---GSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCccccccHHHHHHHHHHccCCccCccc---cCCHHHHHHHHHHHHHHH
Confidence 4666654 24599999999999999999998776 589999999999977653
No 15
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=70.13 E-value=5.1 Score=43.55 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=40.3
Q ss_pred hHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312 239 TLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF 291 (1102)
Q Consensus 239 ~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~ 291 (1102)
.++.+|. .+.|+|..+++|+|++|||.|..+.. .++..++..|+.++..+
T Consensus 152 ~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~---~Ls~~~~~~L~~~i~~v 204 (262)
T 1k3x_A 152 QFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAK---DLNAAQLDALAHALLEI 204 (262)
T ss_dssp CHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGG---GSCHHHHHHHHHHHHHH
T ss_pred cHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcc---cCCHHHHHHHHHHHHHH
Confidence 4555553 24599999999999999999998776 58899999999886544
No 16
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=43.52 E-value=1.1e+02 Score=35.81 Aligned_cols=51 Identities=31% Similarity=0.440 Sum_probs=42.5
Q ss_pred hHHHHHhh-hcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHHH
Q 001312 239 TLKTVLGE-ALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFE 292 (1102)
Q Consensus 239 ~lk~~L~~-~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~~ 292 (1102)
.+..+|.. |.++|...++++|..+|+++..++. .++.+++..|+++|+.+.
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK---NLTEEEITRLVETFKKYE 305 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGG---GCCTTHHHHHHHHHHHCC
T ss_pred chHHhhhccccccCHHHHHHHHHhcCCCCCCChh---hcCHHHHHHHHHHHHhcc
Confidence 56677765 6699999999999999999998775 478889999999987764
No 17
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.23 E-value=1.6e+02 Score=26.36 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001312 350 KFETFDAALDEFYSK-IESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVK 408 (1102)
Q Consensus 350 ~f~sfn~avDeffs~-~e~qk~~~~~~~~e~~~~kKLek~~~~qe~ri~~L~~~~e~~~~ 408 (1102)
.|.....|.+++|-. .+.+.+ ..++++|..-+..|.+.|+.|++..+.++.
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL--------~~LKkkl~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQL--------AALKKHKENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777765533 343332 234555555555666667777666555443
No 18
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.78 E-value=13 Score=42.37 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=27.7
Q ss_pred hhHHHHHh---hhcCCCHHHHHHHHHHcCCCCCCcccc
Q 001312 238 PTLKTVLG---EALGYGPALSEHIILDTGLVPNMKLSE 272 (1102)
Q Consensus 238 ~~lk~~L~---~~~g~gp~laeei~~~agi~~~~~~~~ 272 (1102)
..++.+|. .+.|+|..++.|+|++|||.|..+...
T Consensus 159 ~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~ 196 (364)
T 1tdh_A 159 RPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARS 196 (364)
T ss_dssp SBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHH
T ss_pred ccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhh
Confidence 35666654 245999999999999999999987653
No 19
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=24.76 E-value=26 Score=24.37 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.6
Q ss_pred hhcCCCcEEEEec
Q 001312 586 RYMSKGDVYVHAD 598 (1102)
Q Consensus 586 ky~~~~Diw~HAd 598 (1102)
+-++|-|+|+|-+
T Consensus 7 kDlkppdlwihhe 19 (27)
T 3o71_B 7 KDLRPPDLWIHHE 19 (27)
T ss_pred CCCCCcceeeehh
Confidence 4578999999974
Done!