Query 001313
Match_columns 1102
No_of_seqs 953 out of 5623
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 21:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-68 2.9E-73 687.3 49.4 352 562-1018 260-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3E-56 6.6E-61 572.9 39.9 518 360-1018 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.3E-39 1.8E-43 341.2 8.2 375 588-1019 79-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-38 2.7E-43 339.8 1.6 368 566-991 82-453 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.6E-38 5.6E-43 323.3 -14.8 475 360-990 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2E-37 4.3E-42 316.9 -13.4 453 386-1014 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.8E-33 1.5E-37 312.7 -3.2 227 558-791 260-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-32 5.5E-37 308.2 -5.9 485 362-987 23-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 9.6E-32 2.1E-36 288.6 -3.4 365 561-990 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.9E-36 287.5 -3.4 247 589-841 9-258 (1255)
11 KOG4237 Extracellular matrix p 99.9 4E-28 8.6E-33 249.0 -3.5 291 547-840 52-358 (498)
12 KOG4237 Extracellular matrix p 99.9 3.5E-26 7.6E-31 234.8 -4.4 410 566-987 50-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 7.1E-22 1.5E-26 253.6 26.6 309 587-964 589-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 1E-21 2.2E-26 252.1 27.5 339 580-988 551-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.8E-21 6.1E-26 228.3 17.9 265 588-974 202-466 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1E-20 2.2E-25 223.7 17.5 267 563-952 202-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.3E-19 2E-23 208.9 12.2 116 565-697 181-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 9.7E-19 2.1E-23 208.8 12.0 119 587-721 178-296 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-18 5.3E-23 192.7 -2.2 66 776-841 161-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 3.4E-16 7.3E-21 175.4 9.0 172 96-268 18-206 (319)
21 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.5E-22 152.2 -3.4 166 751-976 29-195 (264)
22 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 152.1 -4.4 181 775-1014 28-212 (264)
23 PLN03150 hypothetical protein; 99.6 1.1E-14 2.3E-19 174.4 11.0 118 907-1024 420-538 (623)
24 PLN03150 hypothetical protein; 99.4 2.8E-12 6.1E-17 153.7 13.9 153 24-218 366-527 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 9.1E-13 2E-17 143.1 -4.5 155 771-987 113-270 (722)
26 KOG1909 Ran GTPase-activating 99.1 3.1E-11 6.7E-16 124.3 5.3 238 97-373 26-283 (382)
27 KOG0532 Leucine-rich repeat (L 99.1 1.6E-12 3.6E-17 141.1 -5.9 177 753-992 73-249 (722)
28 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.4E-15 134.5 8.0 122 712-838 97-219 (394)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 113.7 6.1 111 150-269 16-127 (175)
30 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.3E-16 128.3 0.7 215 126-346 118-339 (505)
31 KOG1909 Ran GTPase-activating 99.1 7E-11 1.5E-15 121.7 3.6 195 73-269 29-255 (382)
32 COG4886 Leucine-rich repeat (L 99.1 2.8E-10 6E-15 131.1 8.6 199 735-995 96-295 (394)
33 PF14580 LRR_9: Leucine-rich r 99.0 9.2E-10 2E-14 107.3 6.9 107 100-219 18-126 (175)
34 PF08263 LRRNT_2: Leucine rich 98.9 7.3E-10 1.6E-14 80.5 4.1 42 28-70 1-43 (43)
35 KOG3207 Beta-tubulin folding c 98.9 6.5E-10 1.4E-14 117.8 2.9 220 225-476 116-341 (505)
36 KOG4658 Apoptotic ATPase [Sign 98.8 4.3E-09 9.3E-14 128.8 7.1 63 125-189 567-629 (889)
37 KOG1259 Nischarin, modulator o 98.8 7.9E-10 1.7E-14 110.8 -0.3 135 125-270 280-414 (490)
38 KOG1259 Nischarin, modulator o 98.8 2.4E-09 5.3E-14 107.3 2.1 182 97-321 210-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 6.6E-09 1.4E-13 83.0 3.0 60 930-989 2-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.5E-14 123.7 -1.0 244 660-994 72-322 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 6.4E-09 1.4E-13 83.1 2.0 60 906-965 2-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.6 5.3E-09 1.1E-13 105.1 0.1 67 352-422 305-374 (419)
43 KOG0531 Protein phosphatase 1, 98.6 9.3E-09 2E-13 118.4 0.1 151 99-268 70-221 (414)
44 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.4E-12 115.2 7.4 130 100-241 522-653 (889)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.6E-08 5.6E-13 100.3 -0.7 232 130-371 137-374 (419)
46 KOG4341 F-box protein containi 98.4 2.4E-08 5.3E-13 105.5 -1.8 262 129-399 138-413 (483)
47 KOG2982 Uncharacterized conser 98.4 5.6E-08 1.2E-12 97.9 0.0 65 359-425 198-263 (418)
48 KOG1859 Leucine-rich repeat pr 98.4 2.5E-08 5.3E-13 112.0 -4.0 20 96-115 104-123 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-07 4.7E-12 92.5 2.2 16 304-319 270-285 (388)
50 COG5238 RNA1 Ran GTPase-activa 98.2 4.3E-07 9.3E-12 90.5 1.8 65 359-423 213-284 (388)
51 KOG1859 Leucine-rich repeat pr 98.2 1.1E-07 2.3E-12 107.0 -3.4 159 124-294 104-293 (1096)
52 KOG4341 F-box protein containi 98.2 3E-07 6.6E-12 97.4 -0.1 238 207-473 139-384 (483)
53 KOG2982 Uncharacterized conser 98.2 9E-07 1.9E-11 89.4 2.7 213 99-341 69-287 (418)
54 KOG4579 Leucine-rich repeat (L 98.1 1.5E-07 3.2E-12 83.9 -3.6 57 908-966 80-136 (177)
55 KOG3665 ZYG-1-like serine/thre 98.0 5.6E-06 1.2E-10 99.2 4.9 153 128-286 121-281 (699)
56 KOG3665 ZYG-1-like serine/thre 97.9 8.6E-06 1.9E-10 97.6 3.6 153 101-262 122-282 (699)
57 KOG4579 Leucine-rich repeat (L 97.8 1.9E-06 4E-11 77.1 -3.0 86 562-651 53-138 (177)
58 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.4E-10 57.3 2.9 36 930-966 2-37 (44)
59 KOG1644 U2-associated snRNP A' 97.7 6E-05 1.3E-09 72.6 5.3 85 179-269 43-127 (233)
60 PRK15386 type III secretion pr 97.5 0.0004 8.6E-09 76.6 9.6 15 537-551 51-65 (426)
61 PRK15386 type III secretion pr 97.5 0.00024 5.3E-09 78.2 7.9 53 755-814 52-104 (426)
62 PF12799 LRR_4: Leucine Rich r 97.5 9E-05 2E-09 53.9 3.0 36 805-841 2-37 (44)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00029 6.2E-09 66.6 6.8 83 582-668 7-89 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00038 8.3E-09 65.7 7.0 125 604-735 5-129 (129)
65 KOG1644 U2-associated snRNP A' 97.3 0.00029 6.2E-09 68.1 5.3 109 101-216 42-150 (233)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00029 6.4E-09 71.2 1.0 107 99-239 41-152 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.0005 1.1E-08 69.6 2.3 70 200-269 59-130 (260)
68 KOG1947 Leucine rich repeat pr 96.7 0.00059 1.3E-08 81.3 1.8 14 358-371 360-373 (482)
69 KOG2123 Uncharacterized conser 96.7 0.00014 3E-09 73.4 -3.6 101 128-236 18-123 (388)
70 KOG1947 Leucine rich repeat pr 96.5 0.00062 1.3E-08 81.1 -0.1 67 252-318 240-307 (482)
71 KOG2123 Uncharacterized conser 96.3 0.00036 7.8E-09 70.5 -3.1 101 152-261 18-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.0098 2.1E-07 35.8 0.8 18 955-973 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.0072 1.6E-07 36.4 0.0 20 931-951 2-21 (22)
74 KOG4308 LRR-containing protein 94.7 0.0011 2.4E-08 76.3 -7.2 174 96-269 110-304 (478)
75 KOG4308 LRR-containing protein 94.6 0.0015 3.2E-08 75.3 -6.6 89 103-191 89-185 (478)
76 KOG3864 Uncharacterized conser 89.9 0.11 2.3E-06 51.0 0.4 80 103-186 103-184 (221)
77 PF13504 LRR_7: Leucine rich r 89.5 0.23 5.1E-06 27.6 1.4 13 612-624 2-14 (17)
78 KOG0473 Leucine-rich repeat pr 89.3 0.013 2.7E-07 58.1 -6.4 82 906-990 43-124 (326)
79 smart00369 LRR_TYP Leucine-ric 88.5 0.38 8.3E-06 30.3 2.1 16 929-944 2-17 (26)
80 smart00370 LRR Leucine-rich re 88.5 0.38 8.3E-06 30.3 2.1 16 929-944 2-17 (26)
81 smart00370 LRR Leucine-rich re 88.1 0.46 1E-05 29.9 2.3 22 610-632 1-22 (26)
82 smart00369 LRR_TYP Leucine-ric 88.1 0.46 1E-05 29.9 2.3 22 610-632 1-22 (26)
83 KOG3864 Uncharacterized conser 85.6 0.23 5.1E-06 48.7 -0.2 35 205-239 150-185 (221)
84 PF13516 LRR_6: Leucine Rich r 84.6 0.62 1.3E-05 28.6 1.5 22 206-227 2-23 (24)
85 PF13516 LRR_6: Leucine Rich r 79.3 0.78 1.7E-05 28.2 0.5 13 130-142 3-15 (24)
86 KOG0473 Leucine-rich repeat pr 78.4 0.081 1.8E-06 52.6 -6.2 89 923-1014 36-124 (326)
87 smart00365 LRR_SD22 Leucine-ri 70.4 3.5 7.5E-05 26.0 1.7 15 952-966 1-15 (26)
88 KOG4242 Predicted myosin-I-bin 67.0 20 0.00043 40.4 7.7 64 154-218 215-280 (553)
89 smart00368 LRR_RI Leucine rich 58.3 10 0.00023 24.3 2.3 19 206-224 2-20 (28)
90 smart00364 LRR_BAC Leucine-ric 52.4 9 0.0002 24.1 1.2 17 612-629 3-19 (26)
91 KOG4242 Predicted myosin-I-bin 44.3 68 0.0015 36.4 7.1 16 734-749 356-371 (553)
92 TIGR00864 PCC polycystin catio 41.8 20 0.00043 49.7 3.2 33 935-967 1-33 (2740)
93 PF15102 TMEM154: TMEM154 prot 39.7 21 0.00046 33.3 2.2 23 1053-1075 66-88 (146)
94 smart00367 LRR_CC Leucine-rich 37.9 32 0.00069 21.5 2.2 11 206-216 2-12 (26)
95 TIGR00864 PCC polycystin catio 37.9 15 0.00032 50.9 1.2 37 959-995 1-37 (2740)
96 PF07172 GRP: Glycine rich pro 36.2 21 0.00045 31.1 1.5 11 1-12 1-11 (95)
97 PF02439 Adeno_E3_CR2: Adenovi 31.9 60 0.0013 22.5 2.7 17 1049-1065 10-26 (38)
98 PF01102 Glycophorin_A: Glycop 29.6 53 0.0012 30.0 3.0 11 1047-1057 67-77 (122)
99 PRK00523 hypothetical protein; 27.6 47 0.001 26.8 2.0 28 1050-1077 7-34 (72)
100 KOG3763 mRNA export factor TAP 27.5 44 0.00096 38.6 2.6 42 358-402 242-285 (585)
101 KOG3763 mRNA export factor TAP 25.9 47 0.001 38.4 2.5 15 586-600 217-231 (585)
102 PRK01844 hypothetical protein; 23.3 62 0.0014 26.2 2.0 23 1055-1077 11-33 (72)
103 PF15050 SCIMP: SCIMP protein 22.1 75 0.0016 28.3 2.4 7 1046-1052 9-15 (133)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-68 Score=687.28 Aligned_cols=352 Identities=36% Similarity=0.533 Sum_probs=255.7
Q ss_pred CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641 (1102)
Q Consensus 562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 641 (1102)
++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------------- 324 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-------------- 324 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC--------------
Confidence 34445555555555555544443 445555555555554444444444444444444444444433
Q ss_pred EccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313 642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721 (1102)
Q Consensus 642 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 721 (1102)
|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|.+.
T Consensus 325 -----------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 325 -----------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred -----------ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 333444555555555555555555555555556666666666665555655555556666666666666
Q ss_pred CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc
Q 001313 722 GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 801 (1102)
Q Consensus 722 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 801 (1102)
+.+|..+..+++|+.|++++|++++ .+|. .|.+++.|+.|++++|.+++.+|..+.
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~-----------------------~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSG-----------------------ELPS-EFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeee-----------------------ECCh-hHhcCCCCCEEECcCCcccCccChhhc
Confidence 5666556555666655555555543 3444 566777777888888888877777777
Q ss_pred CCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcc
Q 001313 802 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 881 (1102)
Q Consensus 802 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1102)
.+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.++.
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~----------------------------- 499 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS----------------------------- 499 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-----------------------------
Confidence 78888888888888887777765 457899999999999988888776554
Q ss_pred ccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCC
Q 001313 882 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961 (1102)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 961 (1102)
.|+.|+|++|++.+.+|+.++++++|++|+|++|.++|.+|..|+++++|+.|||+
T Consensus 500 ------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 500 ------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred ------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 57889999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 962 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
+|+++|.+|..+.++++|+++++++|+++|.+|. .+++.++...++.|||.+||.+
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999998 6889999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-56 Score=572.87 Aligned_cols=518 Identities=31% Similarity=0.503 Sum_probs=379.0
Q ss_pred CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhcc-CCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313 360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSI 438 (1102)
Q Consensus 360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 438 (1102)
.+++.|+++++.+.+..+. .+..+++|+.|+|++|.+.+.+|..+. .+++|++|++++|.+++.++. ..+++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~---~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISS---AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNL 142 (968)
T ss_pred CcEEEEEecCCCccccCCh---HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCC
Confidence 4677777777776665544 566667777777777776666665543 666666666666666654421 233444
Q ss_pred CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313 439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518 (1102)
Q Consensus 439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L 518 (1102)
++|++++|.+.
T Consensus 143 ~~L~Ls~n~~~--------------------------------------------------------------------- 153 (968)
T PLN00113 143 ETLDLSNNMLS--------------------------------------------------------------------- 153 (968)
T ss_pred CEEECcCCccc---------------------------------------------------------------------
Confidence 44444444333
Q ss_pred EeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCc
Q 001313 519 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 598 (1102)
Q Consensus 519 ~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 598 (1102)
+.+|.. ++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|+
T Consensus 154 --------~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~ 223 (968)
T PLN00113 154 --------GEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNN 223 (968)
T ss_pred --------ccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCc
Confidence 222322 224444555555555444444444455555566666666665555555544 5666666666666
Q ss_pred ccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCC
Q 001313 599 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 678 (1102)
Q Consensus 599 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 678 (1102)
+.+.+|..|+++++|++|++++|++++.+|..+ ..+++|+.|++++|.+++..|..+.++++|++|++++|.+.+.+|.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 666666666666666666666666665555544 3566666666666666666666666666666666666666666666
Q ss_pred CcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccc
Q 001313 679 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCI 757 (1102)
Q Consensus 679 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L 757 (1102)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+ ...++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 66666666666666666666666666666666666666666666666666666667777777776666666544 34566
Q ss_pred cEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcC
Q 001313 758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837 (1102)
Q Consensus 758 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 837 (1102)
+.+++++|++.+.+|. .+.++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus 383 ~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 7777777777777777 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCC
Q 001313 838 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 917 (1102)
Q Consensus 838 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 917 (1102)
|++.+.+|..+.. ..|+.|||++|++
T Consensus 462 n~~~~~~p~~~~~------------------------------------------------------~~L~~L~ls~n~l 487 (968)
T PLN00113 462 NKFFGGLPDSFGS------------------------------------------------------KRLENLDLSRNQF 487 (968)
T ss_pred ceeeeecCccccc------------------------------------------------------ccceEEECcCCcc
Confidence 9999988875431 1588999999999
Q ss_pred CCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccc
Q 001313 918 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 997 (1102)
Q Consensus 918 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 997 (1102)
++.+|..|.++++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|..+.++++|+.||+++|+++|.+|..+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCccccCCCCCCCCCC
Q 001313 998 AQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 998 ~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
..+..+...++.+|+..+..|
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hcCcccCEEeccCCcceeeCC
Confidence 888888899999999776443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-39 Score=341.16 Aligned_cols=375 Identities=23% Similarity=0.248 Sum_probs=224.7
Q ss_pred CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667 (1102)
Q Consensus 588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 667 (1102)
.-+.|++++|++..+.+..|.++++|+.+++.+|.++ .||.... ...+|+.|+|.+|.|+.+..+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 3445555555555555555555666666666666555 5554331 2334566666666665555555555556666666
Q ss_pred cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313 668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 747 (1102)
Q Consensus 668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 747 (1102)
+.|.|+.+....|..-.++++|+|++|+|+..-...|..+.+|.+|.|++|+++...+..|.++++|+.|||..|+|...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66665544444555555566666666666555555555555666666666666555555555566666666666655432
Q ss_pred -CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcC
Q 001313 748 -LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 826 (1102)
Q Consensus 748 -~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 826 (1102)
...+-++.+|+.|.+..|++. .+..++|..|.++++|+|+.|+++..-..|+.++++|+.|+|+.|.|....++.+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 222234556666666666655 355567777777777777777777666667777777777777777777666777777
Q ss_pred CCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCC
Q 001313 827 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 906 (1102)
Q Consensus 827 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 906 (1102)
+++|+.|||++|+++...|+.|..+. .
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~ 342 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q 342 (873)
T ss_pred cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence 77777777777777766555554433 4
Q ss_pred CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcc---cccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEE
Q 001313 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 983 (1102)
Q Consensus 907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 983 (1102)
|+.|.|++|++...-...|..+++|+.|||++|.|++.|-+ .|.+|++|+.|+|.+|+|..+....|.++..|+.||
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 56666666666654445566666666666666666665543 355666666666666666644445666666666666
Q ss_pred cccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313 984 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 984 ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
|.+|.+...-|+.+.++ .+..+.+..-.++|+|++
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 66666665555545554 444444444455666543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=339.78 Aligned_cols=368 Identities=27% Similarity=0.277 Sum_probs=220.6
Q ss_pred EEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccc
Q 001313 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645 (1102)
Q Consensus 566 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 645 (1102)
.||+++|++. .+....+..+++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ ++.......++.|+.|||+.
T Consensus 82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence 3444444443 232232333444444444444444 33433333333444444444444 33333333444444444444
Q ss_pred cccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc
Q 001313 646 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 725 (1102)
Q Consensus 646 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 725 (1102)
|.++.+....|-.-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|+|.-.--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 44444444444444444444444444444444444444455555555555543333444445555555555554443223
Q ss_pred ccccCCCcccEEEccCcccccCCCC-CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCC
Q 001313 726 LEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804 (1102)
Q Consensus 726 ~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 804 (1102)
.+|.++++|+.|.+..|.++..-.. ++++..+++|+|+.|++. .+..+.+.++++|+.|++|+|.|..+.++.+.-++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 3445555555555555544432221 224445555555555554 34455777888888888888888888888888888
Q ss_pred CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884 (1102)
Q Consensus 805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1102)
+|++|+|++|+++...+..|..+..|+.|.|++|+++..-...|..+.
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls-------------------------------- 365 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS-------------------------------- 365 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh--------------------------------
Confidence 888888888888877788888888888888888888754444443333
Q ss_pred cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccc---ccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCC
Q 001313 885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ---IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 961 (1102)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 961 (1102)
+|+.|||++|.+++.|-+. |..|++|+.|+|.+|+|..+...+|.++..||+|||.
T Consensus 366 ---------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 366 ---------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred ---------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 6778888888888766543 7788888888999998887777888888899999999
Q ss_pred CCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 962 YNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 962 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
+|-|..+-|..|..+ .|+.|-+..-++-|
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcccceEE
Confidence 998888888888888 78777666555544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=323.32 Aligned_cols=475 Identities=28% Similarity=0.416 Sum_probs=345.8
Q ss_pred CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccC
Q 001313 360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 439 (1102)
Q Consensus 360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~ 439 (1102)
..|+.+.+++|.+....+ .+.++..|.++++.+|+++ ..|++++.+..++.++++.|++. .+ |..+..+.+|.
T Consensus 45 v~l~~lils~N~l~~l~~----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhhccH----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhh
Confidence 345566666665544333 3445566666666666665 45555666666666666666654 33 44555555555
Q ss_pred eeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEE
Q 001313 440 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 519 (1102)
Q Consensus 440 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ 519 (1102)
.++++.|.+.. .|..+..+..++.++
T Consensus 118 ~l~~s~n~~~e------------------------------------------------------l~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 118 KLDCSSNELKE------------------------------------------------------LPDSIGRLLDLEDLD 143 (565)
T ss_pred hhhccccceee------------------------------------------------------cCchHHHHhhhhhhh
Confidence 55555554431 122223333444444
Q ss_pred eccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcc
Q 001313 520 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 599 (1102)
Q Consensus 520 ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l 599 (1102)
..+|++... +..+.++.++..+++.+|++. ..|+.... ++.|++||...|-+
T Consensus 144 ~~~N~i~sl--------------------------p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 144 ATNNQISSL--------------------------PEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred ccccccccC--------------------------chHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhh
Confidence 444444322 333446677889999999998 66666665 78999999999988
Q ss_pred cccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCC
Q 001313 600 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 679 (1102)
Q Consensus 600 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 679 (1102)
+ .+|..++.+.+|..|++.+|++. .+|+ |.+|..|++++++.|+++....+...+++++.+||+.+|+++ ..|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 7 78889999999999999999998 8994 458999999999999998776666779999999999999998 78999
Q ss_pred cCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC---cccEEE-------ccCc-------
Q 001313 680 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR---ILQILD-------ISDN------- 742 (1102)
Q Consensus 680 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~-------ls~n------- 742 (1102)
+..+.+|+.||+++|.++ ..|..++++ .|+.|.+.+|.+..+ -..+-+.. -|++|. ++.-
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 999999999999999998 688889999 899999999987632 21111111 011111 1111
Q ss_pred --ccccCCCCCCCCccccEEEccCcccccccCcccccCcc--CccEEEccCccCcccCCccccCCCCCCE-EEccCcccc
Q 001313 743 --NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSY-LILAHNNLE 817 (1102)
Q Consensus 743 --~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~ 817 (1102)
...+..|+.....+.+.|+++.-+++ .+|...|..-. -....+++.|++. .+|..+..+..+.+ +.+++|.+.
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence 01122333344567788888888887 47775555433 3778899999998 68887777766655 455555554
Q ss_pred ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313 818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897 (1102)
Q Consensus 818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1102)
.+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 426 -fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv--------------------------------------------- 458 (565)
T KOG0472|consen 426 -FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV--------------------------------------------- 458 (565)
T ss_pred -cchHHHHhhhcceeeecccchhh-hcchhhhhhh---------------------------------------------
Confidence 89999999999999999999876 5565544432
Q ss_pred eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313 898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977 (1102)
Q Consensus 898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 977 (1102)
.|+.||+|.|+|. .+|+.+..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .||..+++++
T Consensus 459 --------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 459 --------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred --------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 5889999999997 78998888888898888889999888888999999999999999998 7899999999
Q ss_pred CCCEEEcccCcCc
Q 001313 978 TLAVFSVAYNNLS 990 (1102)
Q Consensus 978 ~L~~l~ls~N~l~ 990 (1102)
+|+.|++++|++.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999999997
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-37 Score=316.86 Aligned_cols=453 Identities=30% Similarity=0.425 Sum_probs=275.4
Q ss_pred CCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceE
Q 001313 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 465 (1102)
Q Consensus 386 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 465 (1102)
-..|+.+.+++|.+.. +...+.++..|.+|++.+|++. .. |.+++.+..++.++.+.|++..
T Consensus 44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls~--------------- 105 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLSE--------------- 105 (565)
T ss_pred hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHhh---------------
Confidence 4567888888888874 4445778888888888888876 33 5666677777777766665540
Q ss_pred EecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEc
Q 001313 466 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545 (1102)
Q Consensus 466 L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L 545 (1102)
+|+.
T Consensus 106 ---------------------------------------------------------------lp~~------------- 109 (565)
T KOG0472|consen 106 ---------------------------------------------------------------LPEQ------------- 109 (565)
T ss_pred ---------------------------------------------------------------ccHH-------------
Confidence 1111
Q ss_pred cCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313 546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625 (1102)
Q Consensus 546 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 625 (1102)
+....++..+++++|.+. ++|++++. +..++.++..+|+++ ..|.++.++.+|..+++.+|+++
T Consensus 110 ------------i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~- 173 (565)
T KOG0472|consen 110 ------------IGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK- 173 (565)
T ss_pred ------------Hhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-
Confidence 112233444444444444 45555554 445555555555555 44555555555555555555555
Q ss_pred ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCcccc
Q 001313 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 705 (1102)
Q Consensus 626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 705 (1102)
.+|+... .++.|++||...|-++. +|..++.+.+|+.|++..|++. .+| .|.+|..|++|+++.|++. .+|....
T Consensus 174 ~l~~~~i-~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~ 248 (565)
T KOG0472|consen 174 ALPENHI-AMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHL 248 (565)
T ss_pred hCCHHHH-HHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHh
Confidence 4444332 25555555555555442 3444555566666666666655 344 5556666666666666655 4444433
Q ss_pred -CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccc---------------
Q 001313 706 -NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG--------------- 769 (1102)
Q Consensus 706 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~--------------- 769 (1102)
+++++.+||+.+|+++ ..|+.++-+.+|++||+|+|.+++..+....+ .|+.|.+.+|.+..
T Consensus 249 ~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 5566666666666665 45555666666666666666665433333333 55555555555421
Q ss_pred ----------------------ccCccc---ccCccCccEEEccCccCcccCCccccCCCC---CCEEEccCccccccCc
Q 001313 770 ----------------------QLKEGT---FFNCLTLMILDLSYNHLNGNIPDRVDGLSQ---LSYLILAHNNLEGEVP 821 (1102)
Q Consensus 770 ----------------------~i~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~p 821 (1102)
..|... ...+.+.+.|++++-+++ .+|+....-.. ....+++.|++. ++|
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elP 404 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELP 404 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhh
Confidence 011111 112334455555555555 23332222111 445555555555 455
Q ss_pred hhhcCCCCCCE-EECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313 822 IQLCRLNQLQL-LDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900 (1102)
Q Consensus 822 ~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1102)
..+..++.+.+ +++++|.+ +-+|..+..
T Consensus 405 k~L~~lkelvT~l~lsnn~i-sfv~~~l~~-------------------------------------------------- 433 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKI-SFVPLELSQ-------------------------------------------------- 433 (565)
T ss_pred hhhHHHHHHHHHHHhhcCcc-ccchHHHHh--------------------------------------------------
Confidence 54444444332 22333322 222222221
Q ss_pred CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 980 (1102)
Q Consensus 901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 980 (1102)
.+.++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..||.+-.++|++....|+.+.++..|.
T Consensus 434 ---l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 434 ---LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred ---hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 236889999998886 79999999999999999999999 8899988888899998899999977777799999999
Q ss_pred EEEcccCcCcccCCccccccCCCCccccCCCCCC
Q 001313 981 VFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 1014 (1102)
Q Consensus 981 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~l 1014 (1102)
.||+.+|.+....|. ++.+.++..+.+.|||+-
T Consensus 509 tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence 999999999855444 899999999999999975
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.8e-33 Score=312.75 Aligned_cols=227 Identities=26% Similarity=0.309 Sum_probs=161.6
Q ss_pred CCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCC
Q 001313 558 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVS 637 (1102)
Q Consensus 558 ~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 637 (1102)
+..+.+|+.++..+|+++ .+|..++. ..+|+.|.+..|.+. -+|....+++.|++|+|..|++. .+|+.++.....
T Consensus 260 i~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNA 335 (1081)
T ss_pred HHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhH
Confidence 345666777777777775 77887776 688888888888888 56667778888999999999887 888877655544
Q ss_pred -CcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313 638 -LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716 (1102)
Q Consensus 638 -L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 716 (1102)
|..|+.+.|++.......-...+.|+.|++.+|.++...-..+.+.++|+.|+|++|++.......+.++..|++|+|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 7888888888876554444567788888888888887777777888888888888888874444567778888888888
Q ss_pred CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCcc
Q 001313 717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 791 (1102)
Q Consensus 717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~ 791 (1102)
+|+++ .+|.++..+..|++|...+|.+. .+|+...++.|+.++++.|+++...-.... ..++|++||+++|.
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 88887 67788888888888888888776 445555555555555555555432111011 11455555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-32 Score=308.16 Aligned_cols=485 Identities=25% Similarity=0.331 Sum_probs=286.5
Q ss_pred CcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCee
Q 001313 362 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 441 (1102)
Q Consensus 362 L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L 441 (1102)
++.|+++.|.+....-. .+....+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. .. +....++.+|+++
T Consensus 23 ~~~ln~~~N~~l~~pl~---~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~v-p~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLE---FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SV-PSSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccccCchH---HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hC-chhhhhhhcchhh
Confidence 55556655544332211 2233444777777766654 45666666667777777776654 33 4555566666666
Q ss_pred ecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEec
Q 001313 442 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 521 (1102)
Q Consensus 442 ~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls 521 (1102)
.|.+|.+. ..| ..+..+.+|+.++++.|.+.. +|..+.
T Consensus 97 nL~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~-----------------------------~Pl~i~----------- 134 (1081)
T KOG0618|consen 97 NLKNNRLQ-SLP-ASISELKNLQYLDLSFNHFGP-----------------------------IPLVIE----------- 134 (1081)
T ss_pred eeccchhh-cCc-hhHHhhhcccccccchhccCC-----------------------------CchhHH-----------
Confidence 66666543 111 123334444444444443321 222222
Q ss_pred cccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccc
Q 001313 522 HIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG 601 (1102)
Q Consensus 522 ~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~ 601 (1102)
.++.+.++..++|....... . ...+.+++..|.+.+.++.++.. +.. .|+|.+|.+.
T Consensus 135 --------------~lt~~~~~~~s~N~~~~~lg----~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 135 --------------VLTAEEELAASNNEKIQRLG----Q-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME- 191 (1081)
T ss_pred --------------hhhHHHHHhhhcchhhhhhc----c-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-
Confidence 34444444555541111000 0 11556666666666666665543 333 4777777765
Q ss_pred cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcC
Q 001313 602 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 681 (1102)
Q Consensus 602 ~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 681 (1102)
-..+..+.+|+.+....|++. .+-. .-++|+.|+.++|.++...+. ....+|++++++.|+++ .+|.+++
T Consensus 192 --~~dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~ 261 (1081)
T KOG0618|consen 192 --VLDLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG 261 (1081)
T ss_pred --hhhhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH
Confidence 123456667777777777665 3221 235677777777777633322 23456777777777776 4457777
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCC-CC--Ccccc
Q 001313 682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC-YD--FVCIE 758 (1102)
Q Consensus 682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~-~~--~~~L~ 758 (1102)
.+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|......+.|++|||..|++.. +|+. +. ..++.
T Consensus 262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLN 338 (1081)
T ss_pred hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHH
Confidence 7777777777777775 66666667777777777777776 345555667777777777777753 3332 21 23456
Q ss_pred EEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313 759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838 (1102)
Q Consensus 759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 838 (1102)
.++.+.|++.. .|...=...+.|+.|.+.+|++++..-..+.+...|+.|+|++|++.......+.++..|+.|+||+|
T Consensus 339 ~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 339 TLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 66666666652 33322234566777888888887776667777778888888888777444455677777788888888
Q ss_pred cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313 839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918 (1102)
Q Consensus 839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 918 (1102)
+++ .+|.+..++. .|++|..-+|++.
T Consensus 418 kL~-~Lp~tva~~~-----------------------------------------------------~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLG-----------------------------------------------------RLHTLRAHSNQLL 443 (1081)
T ss_pred hhh-hhhHHHHhhh-----------------------------------------------------hhHHHhhcCCcee
Confidence 776 4455554443 4566667777776
Q ss_pred CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313 919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987 (1102)
Q Consensus 919 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 987 (1102)
..| ++..++.|+++|+|.|+|+...-..-..-++|++|||++|.=.-..-..|..+.++..+++.-|
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 455 7778888888888888887533222222377888888888733244556666666766766666
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=9.6e-32 Score=288.59 Aligned_cols=365 Identities=25% Similarity=0.369 Sum_probs=242.1
Q ss_pred CCCcCEEEccCCcCC-CCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCc
Q 001313 561 HKQLRLLDVSKNNFQ-GHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR 639 (1102)
Q Consensus 561 ~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 639 (1102)
++-.+-+|+++|.++ +..|..+-. ++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 455667788888887 456666655 677777777777776 67777777777777888777776 444444 3567777
Q ss_pred EEEccccccCC-cccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCC
Q 001313 640 SLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 718 (1102)
Q Consensus 640 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 718 (1102)
.+.+.+|++.. -+|..+..+..|+.|||+.|++. ..|..+..-+++-+|+|++|+|..+....|.+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 77777777642 34555666777777777777776 56666777777777777777776333344566777777777777
Q ss_pred cccCCCcccccCCCcccEEEccCccccc-CCCCCCCCccccEEEccCcccc-cccCcccccCccCccEEEccCccCcccC
Q 001313 719 HIEGPIPLEFCQLRILQILDISDNNISG-SLPSCYDFVCIEQVHLSKNMLH-GQLKEGTFFNCLTLMILDLSYNHLNGNI 796 (1102)
Q Consensus 719 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~~~L~~L~l~~n~l~-~~i~~~~~~~~~~L~~L~Ls~n~l~~~~ 796 (1102)
++. .+|..+..+..|++|+|++|.+.- .+.....+++|+.|++++.+-+ ..+|. ++..+.+|..+|+|.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cc
Confidence 776 455566677777777777776542 1111223456666666665432 23555 6666677777777777766 56
Q ss_pred CccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCc
Q 001313 797 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM 876 (1102)
Q Consensus 797 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1102)
|+.+..+++|+.|+||+|+++ ..........+|++|++|.|+++ ..|+++..++
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------ 291 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------ 291 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence 677777777777777777776 44444555566777777777776 5565554443
Q ss_pred cCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC-CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313 877 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955 (1102)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 955 (1102)
.|+.|.+.+|+++- -||..|+.|.+|+++..++|.+. ..|+.+..+..|
T Consensus 292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 45666666666652 46777777777777777777776 677777777777
Q ss_pred CEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCc
Q 001313 956 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 990 (1102)
Q Consensus 956 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 990 (1102)
+.|.|++|+|- ..|..+.-++.|.+||+..|+=-
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 77777777776 56777777777777777777533
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=287.52 Aligned_cols=247 Identities=26% Similarity=0.336 Sum_probs=109.9
Q ss_pred CcEEEccCCccc-ccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313 589 LTVFNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667 (1102)
Q Consensus 589 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 667 (1102)
++-.|+++|.++ +..|.....++.++.|.|...++. .+|+.+. .+.+|++|.+++|++..+ ...+..++.|+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 344444444444 234444444444455554444444 4444442 344445555554444322 222334444444444
Q ss_pred cCccCc-ccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc
Q 001313 668 EGNHFV-GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 746 (1102)
Q Consensus 668 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 746 (1102)
.+|++. .-+|..+..+..|+.|||++|++. ..|..+....++..|+|++|+|..+...-|.+++.|-.||||+|++..
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence 444442 123444444444445555555444 444444444444445555554443222333444444444555554443
Q ss_pred CCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313 747 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825 (1102)
Q Consensus 747 ~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 825 (1102)
..|..-.+..|++|.|++|.+.-. .-..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|+|.|.+. ..|..+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 333333444444445544444311 1112223444444444443221 234444444444555555555444 4444444
Q ss_pred CCCCCCEEECcCccCC
Q 001313 826 RLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 826 ~l~~L~~L~Ls~N~l~ 841 (1102)
++++|+.|+||+|+|+
T Consensus 243 ~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhheeccCcCcee
Confidence 4455555555554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=4e-28 Score=248.98 Aligned_cols=291 Identities=21% Similarity=0.228 Sum_probs=201.2
Q ss_pred CCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccC-ccccc
Q 001313 547 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTG 625 (1102)
Q Consensus 547 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~ 625 (1102)
+|...|....+-.-.+.-..++|..|.|+ .||+..|..+++|+.|||++|+|+.+.|++|.++++|..|-+.+ |+|+
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 44555555555556677889999999998 99999999999999999999999999999999999988887766 9998
Q ss_pred ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCC-------
Q 001313 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG------- 698 (1102)
Q Consensus 626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------- 698 (1102)
.+|...|.++.+|+.|.+.-|++..+..+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 9999999999999999999999999999999999999999999999986666699999999999999887431
Q ss_pred -----CCCccccCCCCccEEECCCCcccCCCcccccCC-CcccEEEccCcccccCCCC-CC-CCccccEEEccCcccccc
Q 001313 699 -----KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILDISDNNISGSLPS-CY-DFVCIEQVHLSKNMLHGQ 770 (1102)
Q Consensus 699 -----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~p~-~~-~~~~L~~L~l~~n~l~~~ 770 (1102)
..|-.++...-..-..+.++++..+.+..|... ..+..--.+.+...+.-|. ++ .+++|+.+++++|++++
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~- 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR- 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-
Confidence 222223333222223333333332222222111 1111101111112222221 11 34555555555555553
Q ss_pred cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313 771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840 (1102)
Q Consensus 771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 840 (1102)
|.+++|.....+++|.|..|++.......|.++..|+.|+|.+|+|+..-|.+|..+.+|.+|.|-.|++
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 4444666666677777777766665556666667777777777777766666676667777777666665
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.5e-26 Score=234.77 Aligned_cols=410 Identities=20% Similarity=0.215 Sum_probs=278.3
Q ss_pred EEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccc
Q 001313 566 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 645 (1102)
Q Consensus 566 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 645 (1102)
.+|-++-.++ ++|..+ .+.-.++.|..|+|+.+.|.+|+.+++|+.||||+|+|+ .|.+..|.++.+|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 5666776776 788876 567889999999999999999999999999999999999 88888889999988877766
Q ss_pred -cccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccC--
Q 001313 646 -NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-- 722 (1102)
Q Consensus 646 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-- 722 (1102)
|+|+......|.++..|+.|.+.-|++.....+.|..++++..|.+.+|.+....-..|..+..++.+.+..|.+..
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 99999999999999999999999999998888899999999999999999984444588899999999999887431
Q ss_pred ----------CCcccccCCCcccEEEccCcccccCCCCCCCCc--cccEEEccCcccccccCcccccCccCccEEEccCc
Q 001313 723 ----------PIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 790 (1102)
Q Consensus 723 ----------~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n 790 (1102)
..|..++...-..-..+.++++...-+..+.+. ++.+-..+.+...+..|...|..+++|+.|+|++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 111122222222222233333332222222222 22222233444566778888999999999999999
Q ss_pred cCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC-CCCC----
Q 001313 791 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS-SLQP---- 865 (1102)
Q Consensus 791 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~-~~~~---- 865 (1102)
+++++-+.+|.++..++.|.|..|++...-...|.++..|++|+|.+|+|+...|..|.........+... .+..
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 99999999999999999999999999977788899999999999999999999999887665332222111 1100
Q ss_pred cc-chhhhcCC---ccCCcc-----ccccceee---eeccceeee---ccCCcCC---CC-ceEECCCCCCCCCCccccc
Q 001313 866 FE-TSFVIMGG---MDVDPK-----KQILESFD---FTTKSITYT---YQGRVPS---LL-SGLDLSCNRLIGHIPPQIG 926 (1102)
Q Consensus 866 ~~-~~~~~~~~---~~~~~~-----~~~~~~~~---~~~~~~~~~---~~~~~~~---~L-~~L~Ls~N~l~~~ip~~~~ 926 (1102)
.. .....-.+ .+.... ....+.+. +...+.+.. ....-|+ -+ +...-|+..+. .+|.-+.
T Consensus 365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP 443 (498)
T KOG4237|consen 365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP 443 (498)
T ss_pred HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC
Confidence 00 00000001 000000 00001010 000000000 0000010 01 11223333332 3343332
Q ss_pred CCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313 927 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987 (1102)
Q Consensus 927 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 987 (1102)
...++|++.+|.++ .+|.. .+.+| .+|+|+|+++...-..|.+++.|.+|-++||
T Consensus 444 --~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 444 --VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred --chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 34567788888888 56665 56677 7888888888777777888888888888876
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=7.1e-22 Score=253.65 Aligned_cols=309 Identities=21% Similarity=0.243 Sum_probs=183.4
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeee
Q 001313 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 666 (1102)
Q Consensus 587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 666 (1102)
++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++... ..+++|+.|+++++.....+|. +..+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 34555555555444 344444 2445555555555554 444433 2445555555555443333332 44455555555
Q ss_pred ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc
Q 001313 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 746 (1102)
Q Consensus 667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 746 (1102)
+++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE- 738 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence 55555444555555555566666665554334455443 4555666666655443334422 245556666666554
Q ss_pred CCCCCCCCccccEEEccCcccc---c---ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313 747 SLPSCYDFVCIEQVHLSKNMLH---G---QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 820 (1102)
Q Consensus 747 ~~p~~~~~~~L~~L~l~~n~l~---~---~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 820 (1102)
.+|....+++|++|.+.++... + .++...+..+++|+.|++++|...+.+|..++++++|+.|++++|...+.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 3454445555555555543211 0 111112334567888888888777778888888888888888887655567
Q ss_pred chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1102)
|..+ .+++|+.|++++|.....+|..
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------------------------------------------- 844 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLRTFPDI----------------------------------------------------- 844 (1153)
T ss_pred CCCC-CccccCEEECCCCCcccccccc-----------------------------------------------------
Confidence 7665 6788888888887544333321
Q ss_pred CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCC-CCCCCCCcccccCCCcCCEEeCCCCc
Q 001313 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNK 964 (1102)
Q Consensus 901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~ 964 (1102)
+.+++.|+|++|.++ .+|..+..+++|++|+|++ |+++ .+|..+..+++|+.++++++.
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 125778888888887 5788888888888888887 5555 567778888888888888774
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1e-21 Score=252.14 Aligned_cols=339 Identities=22% Similarity=0.261 Sum_probs=272.4
Q ss_pred chhhhcCCCCcEEEccCCc------ccccCCcccCCCC-CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcc
Q 001313 580 LEIGDILSRLTVFNISMNA------LDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 652 (1102)
Q Consensus 580 ~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~ 652 (1102)
...+..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|++.. .
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-L 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-c
Confidence 3444457888888876553 3335677777764 5999999999998 889876 57899999999999875 4
Q ss_pred cccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313 653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732 (1102)
Q Consensus 653 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 732 (1102)
+..+..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 5667889999999999987666676 47889999999999998777899999999999999999986656777665 789
Q ss_pred cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCc-------ccCCccccCCCC
Q 001313 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-------GNIPDRVDGLSQ 805 (1102)
Q Consensus 733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~-------~~~p~~~~~l~~ 805 (1102)
+|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++... ...|..+...++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 9999999999877777754 468999999999986 5776 33 5788999988874422 122223334578
Q ss_pred CCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcccccc
Q 001313 806 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 885 (1102)
Q Consensus 806 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1102)
|+.|+|++|...+.+|..+.++++|+.|++++|...+.+|... +
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------- 823 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------- 823 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------
Confidence 9999999999888999999999999999999987655666543 1
Q ss_pred ceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCC-Cc
Q 001313 886 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY-NK 964 (1102)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~ 964 (1102)
++.|+.|+|++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|+|++ |+
T Consensus 824 ------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 824 ------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred ------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence 226899999998776667754 368999999999999 6899999999999999998 56
Q ss_pred CcccCchhhhcCCCCCEEEcccCc
Q 001313 965 LSWKIPYQLVELNTLAVFSVAYNN 988 (1102)
Q Consensus 965 l~~~~p~~l~~l~~L~~l~ls~N~ 988 (1102)
|. .+|..+..++.|+.++++++.
T Consensus 882 L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cC-ccCcccccccCCCeeecCCCc
Confidence 66 578888899999999999874
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.8e-21 Score=228.33 Aligned_cols=265 Identities=26% Similarity=0.327 Sum_probs=132.6
Q ss_pred CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667 (1102)
Q Consensus 588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 667 (1102)
.-..|+++.|.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.+ |. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 3556777777776 4565553 35677777777776 5553 235555555555555533 21 1234444444
Q ss_pred cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313 668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 747 (1102)
Q Consensus 668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 747 (1102)
++|.++ .+|..+ ++|+.|++++|+++. +|. ..++|+.|++++|++++
T Consensus 270 s~N~L~-------------------------~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 270 FSNPLT-------------------------HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred cCCchh-------------------------hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 444443 222211 234444444444442 222 12345555555555543
Q ss_pred CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC
Q 001313 748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827 (1102)
Q Consensus 748 ~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 827 (1102)
+|.. ..+|+.|++++|++++ +|. + ..+|+.|+|++|++++ +|.. ..+|+.|++++|++++ +|.. .
T Consensus 317 Lp~l--p~~L~~L~Ls~N~L~~-LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 317 LPAL--PSELCKLWAYNNQLTS-LPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred CCCC--cccccccccccCcccc-ccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 2221 1234444444444432 332 1 1356666666666663 3332 2345566666666663 4432 2
Q ss_pred CCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCC
Q 001313 828 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907 (1102)
Q Consensus 828 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 907 (1102)
.+|+.|++++|++++ +|.. ++.|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------------~s~L 404 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL--------------------------------------------------------PSEL 404 (788)
T ss_pred cccceEEecCCcccC-CCCc--------------------------------------------------------ccCC
Confidence 355666666666553 2211 1135
Q ss_pred ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh
Q 001313 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV 974 (1102)
Q Consensus 908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 974 (1102)
+.|++++|++++ +|... .+|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|+|.+|..+.
T Consensus 405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 556666666653 44322 34555666666665 4566666666666666666666666555553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1e-20 Score=223.70 Aligned_cols=267 Identities=27% Similarity=0.322 Sum_probs=196.0
Q ss_pred CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEE
Q 001313 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 642 (1102)
Q Consensus 563 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 642 (1102)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3568999999998 7998774 589999999999994 5642 588999999999999 78852 47899999
Q ss_pred ccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccC
Q 001313 643 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG 722 (1102)
Q Consensus 643 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 722 (1102)
+++|.++... . ...+|+.|++++|+++. +|.. .++|+.|++++|++++ +|... .+|+.|++++|++++
T Consensus 269 Ls~N~L~~Lp-~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTHLP-A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhhhh-h---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc
Confidence 9999988543 2 23578889999999884 4542 4678899999998884 45422 357777888888764
Q ss_pred CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccC
Q 001313 723 PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG 802 (1102)
Q Consensus 723 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 802 (1102)
+|.. ..+|+.|++++|++++ +|. . ..+|+.|++++|++++ +|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~------------------------LP~-l---p~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS------------------------LPT-L---PSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred -cccc---ccccceEecCCCccCC------------------------CCC-C---Ccccceehhhcccccc-Cccc---
Confidence 4431 1367777777777663 332 1 1346667777777764 4543
Q ss_pred CCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccc
Q 001313 803 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 882 (1102)
Q Consensus 803 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1102)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---------------------------------- 421 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---------------------------------- 421 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence 2467788888888874 5533 3578888999988874 45321
Q ss_pred cccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCC
Q 001313 883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 952 (1102)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 952 (1102)
..|+.|+|++|+++ .+|..|.++++|+.|+|++|.|++.+|..+..+
T Consensus 422 ----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 ----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 14667899999998 689999999999999999999999888877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=9.3e-19 Score=208.95 Aligned_cols=116 Identities=27% Similarity=0.330 Sum_probs=53.0
Q ss_pred CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644 (1102)
Q Consensus 565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 644 (1102)
..|+++++.++ .+|..+ .+.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls 249 (754)
T PRK15370 181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELS 249 (754)
T ss_pred eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence 44555555554 444433 234555566655555 2333332 35566666666555 4554432 245555555
Q ss_pred ccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC
Q 001313 645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697 (1102)
Q Consensus 645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 697 (1102)
+|++..+ |..+ ..+|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 250 ~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5554422 2221 123444444444444 2333221 24444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=9.7e-19 Score=208.82 Aligned_cols=119 Identities=28% Similarity=0.369 Sum_probs=65.6
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeee
Q 001313 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 666 (1102)
Q Consensus 587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 666 (1102)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|...+ .+|+.|++++|+++.. |..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence 45677888887777 4555442 46788888888887 6776553 4677777777766643 3222 13455555
Q ss_pred ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721 (1102)
Q Consensus 667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 721 (1102)
+++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5555554 3343332 24555555555554 2343322 24444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=2.4e-18 Score=192.69 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=31.5
Q ss_pred ccCccCccEEEccCccCccc----CCccccCCCCCCEEEccCccccccC----chhhcCCCCCCEEECcCccCC
Q 001313 776 FFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEV----PIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.. +..+..+++|++|++++|+++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 33444555555555555421 1222333445555555555554222 223344555555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=3.4e-16 Score=175.37 Aligned_cols=172 Identities=26% Similarity=0.259 Sum_probs=93.2
Q ss_pred cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCC------cchhHhhhcCCCcCEEEcCCCcccCCC
Q 001313 96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFN------NSILSSLARLSSLTSLDLSANRLKGSI 169 (1102)
Q Consensus 96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~------~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 169 (1102)
.|..++.|++|+++++.++........+.+...++|++|+++++.+. ..++..+.++++|+.|++++|.+.+.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD- 96 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-
Confidence 34555667777777777654322222334556667777777776655 23445566677777777777766532
Q ss_pred ChhhhccCCC---CcEEEcCCCcCCcccccCCccccCCC-CCcCEEEcCCCcCCh----hhhHhhhccCCCcEEEccCCc
Q 001313 170 DIKELDSLRD---LEKLNIGRNMIDKFVVSKGPKRLSRL-NNLKVFDLSGNLFNN----SILSSLARLSSLRSLLLYDNR 241 (1102)
Q Consensus 170 ~~~~l~~l~~---L~~L~Ls~n~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~ 241 (1102)
.+..+..+.+ |++|++++|.+.+.........+..+ ++|++|++++|.+++ .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 2333433333 66677766666532221112334445 666666666666653 223344455566666666666
Q ss_pred CCCCCch---hhccCCCCCcEEecccCccC
Q 001313 242 LEGSIDV---KEFDSLSNLEELDMSYNEID 268 (1102)
Q Consensus 242 l~~~~~~---~~l~~l~~L~~L~L~~n~l~ 268 (1102)
+.+.... ..+..+++|++|++++|.+.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 5431110 12333446666666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-17 Score=152.24 Aligned_cols=166 Identities=30% Similarity=0.499 Sum_probs=121.8
Q ss_pred CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCC
Q 001313 751 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 830 (1102)
Q Consensus 751 ~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 830 (1102)
.+....++.|.+++|+++ .+|+ .+..+.+|+.|++++|+++ .+|..++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 334445555555555555 4566 6778888888888888887 57788888888888888888887 788888888888
Q ss_pred CEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCce
Q 001313 831 QLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 909 (1102)
Q Consensus 831 ~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 909 (1102)
+.|||.+|++.. ..|..|..++ .|+.
T Consensus 105 evldltynnl~e~~lpgnff~m~-----------------------------------------------------tlra 131 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMT-----------------------------------------------------TLRA 131 (264)
T ss_pred hhhhccccccccccCCcchhHHH-----------------------------------------------------HHHH
Confidence 888888888763 2444433222 3566
Q ss_pred EECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcC
Q 001313 910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 976 (1102)
Q Consensus 910 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 976 (1102)
|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 777788776 67777888888888888888777 67777888888888888888887 566666554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=152.06 Aligned_cols=181 Identities=29% Similarity=0.456 Sum_probs=156.3
Q ss_pred cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 854 (1102)
Q Consensus 775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 854 (1102)
.+.++...+.|.||+|+++ .+|..++.+.+|+.|++++|+++ ..|.+++.++.|+.|+++-|++. ..|..|+.+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-- 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-- 102 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence 3567788899999999999 67778999999999999999999 88999999999999999999986 6677776554
Q ss_pred ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC-CCcccccCCCcCCE
Q 001313 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQT 933 (1102)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~ 933 (1102)
.|+.|||++|++.. ..|..|-.++.|+.
T Consensus 103 ---------------------------------------------------~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 103 ---------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred ---------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHH
Confidence 57889999999975 68889999999999
Q ss_pred EECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCC---ccccCC
Q 001313 934 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN---ESSYEG 1010 (1102)
Q Consensus 934 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~---~~~~~g 1010 (1102)
|.|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++...|+ ++++.-.. ....+.
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~ 208 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEE 208 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhh
Confidence 999999999 88999999999999999999998 7899999999999999999999987776 66554332 233456
Q ss_pred CCCC
Q 001313 1011 NPFL 1014 (1102)
Q Consensus 1011 N~~l 1014 (1102)
|||.
T Consensus 209 NPwv 212 (264)
T KOG0617|consen 209 NPWV 212 (264)
T ss_pred CCCC
Confidence 6654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.1e-14 Score=174.44 Aligned_cols=118 Identities=33% Similarity=0.560 Sum_probs=106.4
Q ss_pred CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 986 (1102)
Q Consensus 907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 986 (1102)
++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCccccc-cCCCCccccCCCCCCCCCCCCCCCC
Q 001313 987 NNLSGKIPERAAQ-FATFNESSYEGNPFLCGPPLPICIS 1024 (1102)
Q Consensus 987 N~l~~~~p~~~~~-~~~~~~~~~~gN~~lC~~~~~~~c~ 1024 (1102)
|+++|.+|..+.. +.......+.+|+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999986543 2344567789999999976544453
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=2.8e-12 Score=153.73 Aligned_cols=153 Identities=30% Similarity=0.402 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCc----CcCceEecC--CCC--cEEEEEcCCCCCCcccccccc
Q 001313 24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCC----QWERVSCNN--TMG--RVVVLDLSQTHRGEYWYLNAS 95 (1102)
Q Consensus 24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc----~w~gv~c~~--~~~--~v~~L~L~~~~~~~~~~~~~~ 95 (1102)
...+.++|.+||+++|+++.+|.. .+|.+ ..|| .|.||.|+. ..+ +|+.|+|+++.+.|
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g------- 432 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG------- 432 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccc-------
Confidence 445678899999999999976642 48953 4453 799999952 122 46666666654433
Q ss_pred cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhc
Q 001313 96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELD 175 (1102)
Q Consensus 96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 175 (1102)
..+ ..++++++|++|+|++|.+.+.+|..++++++|++|||++|++.+.+ +..++
T Consensus 433 --------------------~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~ 487 (623)
T PLN03150 433 --------------------FIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLG 487 (623)
T ss_pred --------------------cCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHh
Confidence 332 23455555666666666655555656666666666666666665543 24555
Q ss_pred cCCCCcEEEcCCCcCCcccccCCccccCC-CCCcCEEEcCCCcC
Q 001313 176 SLRDLEKLNIGRNMIDKFVVSKGPKRLSR-LNNLKVFDLSGNLF 218 (1102)
Q Consensus 176 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l 218 (1102)
++++|++|+|++|.+.+..| ..++. ..++..+++.+|..
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP----~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVP----AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCCCCEEECcCCcccccCC----hHHhhccccCceEEecCCcc
Confidence 66666666666666555544 33333 23455666666643
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=9.1e-13 Score=143.05 Aligned_cols=155 Identities=30% Similarity=0.484 Sum_probs=86.4
Q ss_pred cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313 771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850 (1102)
Q Consensus 771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 850 (1102)
||. .+.++..|++|||+.|+++ .+|..+..|+ |+.|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..+++
T Consensus 113 ip~-~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 113 IPE-AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred cch-hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence 444 4555555555555555555 3444444443 555556666555 45555555555555555555554 22222222
Q ss_pred ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313 851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK 930 (1102)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~ 930 (1102)
+. .|+.|.+..|++. ..|+++..| .
T Consensus 188 l~-----------------------------------------------------slr~l~vrRn~l~-~lp~El~~L-p 212 (722)
T KOG0532|consen 188 LT-----------------------------------------------------SLRDLNVRRNHLE-DLPEELCSL-P 212 (722)
T ss_pred HH-----------------------------------------------------HHHHHHHhhhhhh-hCCHHHhCC-c
Confidence 21 2344445555554 345555544 3
Q ss_pred CCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh---cCCCCCEEEcccC
Q 001313 931 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV---ELNTLAVFSVAYN 987 (1102)
Q Consensus 931 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~l~ls~N 987 (1102)
|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|+ ..|..+. ...-.++|+..-.
T Consensus 213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 677888888887 77777888888888888888887 4455443 2344456665544
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=3.1e-11 Score=124.25 Aligned_cols=238 Identities=27% Similarity=0.361 Sum_probs=114.0
Q ss_pred CCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc---CCcchhH-------hhhcCCCcCEEEcCCCccc
Q 001313 97 FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL---FNNSILS-------SLARLSSLTSLDLSANRLK 166 (1102)
Q Consensus 97 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~---~~~~~~~-------~l~~l~~L~~L~Ls~n~l~ 166 (1102)
...+..++.++|++|.+.........+.+.+.++||..++|+-. ....+|+ ++..+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34566677777777776433332333456667777777777532 1223333 3445567777777777664
Q ss_pred CCCChh----hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcC
Q 001313 167 GSIDIK----ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRL 242 (1102)
Q Consensus 167 ~~~~~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 242 (1102)
.. .++ -+.++..|++|.|.+|.+...... .++. .|.+|. .....+.-++|+++..++|++
T Consensus 106 ~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~----~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 106 PK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGG----RLGR--ALFELA---------VNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cc-chHHHHHHHHhccCHHHHhhhcCCCChhHHH----HHHH--HHHHHH---------HHhccCCCcceEEEEeecccc
Confidence 22 122 224455566666665554432210 1000 000000 011123345666666666665
Q ss_pred CCCCc---hhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcc
Q 001313 243 EGSID---VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT 319 (1102)
Q Consensus 243 ~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 319 (1102)
...-. ...|...+.|+++.++.|.|.... ...+...+..+|+|++|||.+|-++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG-----------------------~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-----------------------VTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCch-----------------------hHHHHHHHHhCCcceeeecccchhh
Confidence 32111 224556667777777776654221 1233455666677777777776654
Q ss_pred cc-ccccccccccccccceeecccchhhhchh--hHHHhhccCCCCcEEecccCcCc
Q 001313 320 ET-VTTTTQGFPHFKSLKELYMDDARIALNTS--FLQIIGESMPSIQYLSLSNSSVS 373 (1102)
Q Consensus 320 ~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~ 373 (1102)
.. .......++.++.|+++++++|.+...|. +...+....|+|++|.+.+|.++
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 32 11222233334444444444443332222 22333333444555555444443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.6e-12 Score=141.10 Aligned_cols=177 Identities=32% Similarity=0.485 Sum_probs=143.3
Q ss_pred CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCE
Q 001313 753 DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 832 (1102)
Q Consensus 753 ~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 832 (1102)
+++--...+++.|++. .+|. .+..+..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 3445566788888886 5777 7777778888888888887 67888888888888888888887 7777777775 788
Q ss_pred EECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEEC
Q 001313 833 LDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDL 912 (1102)
Q Consensus 833 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 912 (1102)
|-+++|+++ .+|..++.. ..|..||.
T Consensus 148 li~sNNkl~-~lp~~ig~~-----------------------------------------------------~tl~~ld~ 173 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLL-----------------------------------------------------PTLAHLDV 173 (722)
T ss_pred EEEecCccc-cCCcccccc-----------------------------------------------------hhHHHhhh
Confidence 888888886 444444311 25778999
Q ss_pred CCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313 913 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 913 s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
|.|.+. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|-+|..|++|-|.+|+|..+
T Consensus 174 s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 174 SKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 999998 68889999999999999999999 556667766 4889999999999 7999999999999999999999854
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=134.46 Aligned_cols=122 Identities=32% Similarity=0.442 Sum_probs=58.9
Q ss_pred EEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCc-cccEEEccCcccccccCcccccCccCccEEEccCc
Q 001313 712 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV-CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 790 (1102)
Q Consensus 712 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~-~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n 790 (1102)
.+++..|.+...+ ..+...+.++.|++.+|.++...|...... +|+.|++++|.+. .+|. .+.++++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhh-hhhccccccccccCCc
Confidence 4666666653222 223444667777777777763333222221 4555555555554 2322 3444555555555555
Q ss_pred cCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313 791 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838 (1102)
Q Consensus 791 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 838 (1102)
+++ .+|...+..+.|+.|++++|++. .+|........|++|++++|
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 554 23333334445555555555554 34443333444445555544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=113.73 Aligned_cols=111 Identities=28% Similarity=0.394 Sum_probs=39.1
Q ss_pred hcCCCcCEEEcCCCcccCCCChhhhc-cCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhc
Q 001313 150 ARLSSLTSLDLSANRLKGSIDIKELD-SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLAR 228 (1102)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 228 (1102)
.+..++++|+|++|.|.. .+.++ .+.+|+.|++++|.+..+ +.+..+++|++|++++|.++...+.....
T Consensus 16 ~n~~~~~~L~L~~n~I~~---Ie~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST---IENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccc---ccchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCccccchHHh
Confidence 344455666666666552 23444 456666677777766665 45677888888888888887543322246
Q ss_pred cCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCC
Q 001313 229 LSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269 (1102)
Q Consensus 229 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 269 (1102)
+++|++|++++|++...-....++.+++|++|++.+|.++.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 78888888888888654445577888889999998888763
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-11 Score=128.32 Aligned_cols=215 Identities=25% Similarity=0.319 Sum_probs=114.7
Q ss_pred cCCCCCcEEeCCCCcCCcchh-HhhhcCCCcCEEEcCCCcccCCCChhhh-ccCCCCcEEEcCCCcCCcccccCCccccC
Q 001313 126 SRLSNLKMLNLVGNLFNNSIL-SSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNMIDKFVVSKGPKRLS 203 (1102)
Q Consensus 126 ~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 203 (1102)
++++.||...|.++.+..... .....|++++.|||++|-+..-.+...+ ..+++|+.|+++.|++...... ..-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---NTTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---cchh
Confidence 345566666666655442111 2445566666666666655432222222 4566666666666665433221 1112
Q ss_pred CCCCcCEEEcCCCcCChh-hhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhcccccc
Q 001313 204 RLNNLKVFDLSGNLFNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKL 282 (1102)
Q Consensus 204 ~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 282 (1102)
.+++|+.|.|+.|.++-. +...+..+|+|+.|+|..|... .+......-+..|++|||++|++-++........++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 455666666666666532 2223445566666666666421 11112334455666666666666555544445556666
Q ss_pred ceeccccccccCchh----hhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhh
Q 001313 283 SYLHLLRVGIRDGSK----LLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIA 346 (1102)
Q Consensus 283 ~~L~l~~~~~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 346 (1102)
..|+++.+.+..... ...-...+|+|++|++..|++.+.. ....+..+++|+.+.+..+.+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~--sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR--SLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc--ccchhhccchhhhhhccccccc
Confidence 666666665544221 1222456888999999988875332 2233445566777766665543
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=7e-11 Score=121.69 Aligned_cols=195 Identities=23% Similarity=0.219 Sum_probs=123.0
Q ss_pred CCcEEEEEcCCCCCCc-ccccccccCCCCCCCCEEeCCCCCCCCcccch-------hhhhhcCCCCCcEEeCCCCcCCcc
Q 001313 73 MGRVVVLDLSQTHRGE-YWYLNASLFTPFQQLESLDLRDNDIAGCVENE-------GLERLSRLSNLKMLNLVGNLFNNS 144 (1102)
Q Consensus 73 ~~~v~~L~L~~~~~~~-~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~-------~~~~l~~l~~L~~L~Ls~n~~~~~ 144 (1102)
...++.++|+|+..+. ....-...+++-+.|+..++++- ++|.+... ..+.+..+++|++||||+|.+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3468999999984332 12223446778889999999875 34443322 235566788999999999998743
Q ss_pred hh----HhhhcCCCcCEEEcCCCcccCCCChhh-------------hccCCCCcEEEcCCCcCCcccccCCccccCCCCC
Q 001313 145 IL----SSLARLSSLTSLDLSANRLKGSIDIKE-------------LDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207 (1102)
Q Consensus 145 ~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~ 207 (1102)
.+ .-+.++..|++|.|.+|.+. ...... ...-++|+++..++|++.......+...+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 33 34577899999999999874 222222 2344567777777777665544444455666667
Q ss_pred cCEEEcCCCcCCh----hhhHhhhccCCCcEEEccCCcCCCCCc---hhhccCCCCCcEEecccCccCC
Q 001313 208 LKVFDLSGNLFNN----SILSSLARLSSLRSLLLYDNRLEGSID---VKEFDSLSNLEELDMSYNEIDN 269 (1102)
Q Consensus 208 L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~ 269 (1102)
|+.+.++.|.+.. .....+..+++|++|||.+|.++.... ...+..+++|++|++++|.+.+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 7777777766543 233455666777777777766542111 2345556666666666666554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.8e-10 Score=131.14 Aligned_cols=199 Identities=31% Similarity=0.462 Sum_probs=131.0
Q ss_pred cEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCcc-CccEEEccCccCcccCCccccCCCCCCEEEccC
Q 001313 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL-TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 813 (1102)
Q Consensus 735 ~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 813 (1102)
..++++.|.+...+......+.++.+++.+|.++. ++. ...... +|+.|++++|++. .+|..++.+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCccccc-Ccc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 35677777765555555555677778888877763 554 444443 7888888888877 4556677778888888888
Q ss_pred ccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeecc
Q 001313 814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 893 (1102)
Q Consensus 814 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1102)
|+++ .+|......+.|+.|++++|+++.. |....
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~-------------------------------------------- 206 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEIE-------------------------------------------- 206 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccC-chhhh--------------------------------------------
Confidence 8887 5666555777788888888877632 22110
Q ss_pred ceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhh
Q 001313 894 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL 973 (1102)
Q Consensus 894 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 973 (1102)
.+..|+++++++|++. .++..+.+++.+..|.+++|++. ..+..++.++.++.|++++|+++. ++. +
T Consensus 207 ---------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~ 273 (394)
T COG4886 207 ---------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-L 273 (394)
T ss_pred ---------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-c
Confidence 1123666777777533 45556677777777777777776 336667777777777777777773 333 6
Q ss_pred hcCCCCCEEEcccCcCcccCCc
Q 001313 974 VELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 974 ~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+.+.+++.+++++|.++...|.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 6777777777777777665554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=9.2e-10 Score=107.26 Aligned_cols=107 Identities=35% Similarity=0.491 Sum_probs=26.5
Q ss_pred CCCCCEEeCCCCCCCCcccchhhhhhc-CCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhh-ccC
Q 001313 100 FQQLESLDLRDNDIAGCVENEGLERLS-RLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSL 177 (1102)
Q Consensus 100 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l 177 (1102)
...+++|+|++|.|.... .++ .+.+|+.|+|++|.++. .+.+..+++|++|++++|+++. ++. .+ ..+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~-i~~-~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISS-ISE-GLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CH-HHHHH-
T ss_pred cccccccccccccccccc------chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCc-ccc-chHHhC
Confidence 334566666666554321 233 34556666666666553 2345555666666666666553 221 22 345
Q ss_pred CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313 178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219 (1102)
Q Consensus 178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 219 (1102)
++|++|++++|++..... ...+..+++|++|++.+|.++
T Consensus 88 p~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCccc
Confidence 555555555555544322 133444555555555555543
No 34
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.95 E-value=7.3e-10 Score=80.51 Aligned_cols=42 Identities=36% Similarity=0.697 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhhhhcc-CCCCCCCCCCCCCCCCCCcCcCceEec
Q 001313 28 LNHERFALLQLKLFFI-DPYNYLLDWVDDEGATDCCQWERVSCN 70 (1102)
Q Consensus 28 ~~~~~~all~~k~~~~-~~~~~l~~w~~~~~~~~cc~w~gv~c~ 70 (1102)
+++|++||++||+++. +|.+.+++|.... +++||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 3689999999999998 4668999998631 3699999999996
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.5e-10 Score=117.78 Aligned_cols=220 Identities=25% Similarity=0.276 Sum_probs=140.0
Q ss_pred hhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCC
Q 001313 225 SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGS 304 (1102)
Q Consensus 225 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 304 (1102)
-=+++.+|+...|.++........+....|++++.|||+.|-+..+. .+......
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-------------------------~v~~i~eq 170 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-------------------------PVLKIAEQ 170 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-------------------------HHHHHHHh
Confidence 34567899999999987652211245678999999999999776443 22333455
Q ss_pred CCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCcc
Q 001313 305 FPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC 384 (1102)
Q Consensus 305 l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 384 (1102)
+|+|+.|+|+.|++........ -..++.|+.|.++.|.+. ..-..++...+|+|+.|++..|........ ...
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~--~~~l~~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~ 243 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNT--TLLLSHLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKAT---STK 243 (505)
T ss_pred cccchhcccccccccCCccccc--hhhhhhhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecc---hhh
Confidence 6666666666666543322111 114566777777777543 222233333488888888888852221111 334
Q ss_pred CCCCccEEEcCCCcCCCCc-chhccCCCCCcEEEcCCCccccccCCcc-----cccCCccCeeecCCcccccccCccccc
Q 001313 385 PLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSP-----LIHLTSIEDLILSDNHFQIPISLEPLF 458 (1102)
Q Consensus 385 ~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~l~ 458 (1102)
-+..|++|+|++|++.... -...+.++.|+.|+++.|.+...-.++. ...+++|+.|++..|++...-....+.
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 4567888888888776422 1346778888888888887763222222 356788888888888886555566667
Q ss_pred cCCcceEEecCCCccchh
Q 001313 459 NHSRLKIFDAENNEINAE 476 (1102)
Q Consensus 459 ~l~~L~~L~l~~n~l~~~ 476 (1102)
.+++|+.+.+..|.+...
T Consensus 324 ~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhhccccccccc
Confidence 777888888777776643
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=4.3e-09 Score=128.78 Aligned_cols=63 Identities=30% Similarity=0.338 Sum_probs=32.6
Q ss_pred hcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCc
Q 001313 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNM 189 (1102)
Q Consensus 125 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~ 189 (1102)
|..++.||+|||++|.--+.+|.+|+.|-+||+|+++++.+... |..+.+|++|.+|++..+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc--chHHHHHHhhheecccccc
Confidence 44555555555555544445555555555555555555555421 3445555555555554443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=7.9e-10 Score=110.76 Aligned_cols=135 Identities=30% Similarity=0.406 Sum_probs=97.4
Q ss_pred hcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCC
Q 001313 125 LSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSR 204 (1102)
Q Consensus 125 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 204 (1102)
+...+.|+.+|||+|.++ .+..++.-.+.++.|++|+|.+.. .+.+..+++|++|||++|.++... ..-.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~-----Gwh~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECV-----GWHLK 350 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhh-----hhHhh
Confidence 345667778888888776 466677777888888888887763 345777888888888888776552 23456
Q ss_pred CCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCc
Q 001313 205 LNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNF 270 (1102)
Q Consensus 205 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 270 (1102)
+.+.++|.|++|.+.. ...++++-+|..||+++|++...-....++++|.|+.+.+.+|.+...
T Consensus 351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 7788888888887753 456777778888888888876433455678888888888888876543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=2.4e-09 Score=107.35 Aligned_cols=182 Identities=27% Similarity=0.430 Sum_probs=124.6
Q ss_pred CCCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCC-----------------------cchhHhhhcCC
Q 001313 97 FTPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFN-----------------------NSILSSLARLS 153 (1102)
Q Consensus 97 ~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~-----------------------~~~~~~l~~l~ 153 (1102)
+..|++|..+.++.|+-..+..- ...=+.|+++.+....++ |.....+-..+
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~-----~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDI-----ELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred hHHhhhhheeeeeccchhheece-----eecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 34577788888887764322110 112245666666554332 22222334457
Q ss_pred CcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCc
Q 001313 154 SLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLR 233 (1102)
Q Consensus 154 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 233 (1102)
.|++||||+|.|+. ++ +.+.-+++++.|++++|.+... ..+..+++|++|||++|.++. +..+-.++.+++
T Consensus 285 ~LtelDLS~N~I~~-iD-ESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-ID-ESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK 355 (490)
T ss_pred hhhhccccccchhh-hh-hhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence 88899999998873 33 5677788999999999988877 568888999999999998764 344556778889
Q ss_pred EEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeC
Q 001313 234 SLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDL 313 (1102)
Q Consensus 234 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L 313 (1102)
.|.|+.|.+. ....+.++-+|..||+++|+|..... ...++++|.|+++.+
T Consensus 356 tL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~lde--------------------------V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 356 TLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDE--------------------------VNHIGNLPCLETLRL 406 (490)
T ss_pred eeehhhhhHh---hhhhhHhhhhheeccccccchhhHHH--------------------------hcccccccHHHHHhh
Confidence 9999998875 23367788888999999998864432 345677777777777
Q ss_pred CCCCcccc
Q 001313 314 SYNNFTET 321 (1102)
Q Consensus 314 s~n~~~~~ 321 (1102)
.+|++...
T Consensus 407 ~~NPl~~~ 414 (490)
T KOG1259|consen 407 TGNPLAGS 414 (490)
T ss_pred cCCCcccc
Confidence 77776544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=6.6e-09 Score=83.05 Aligned_cols=60 Identities=40% Similarity=0.582 Sum_probs=34.4
Q ss_pred cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcC
Q 001313 930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 989 (1102)
Q Consensus 930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 989 (1102)
+|++|++++|+|+...+..|.++++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555555555555555566666666655555555555555666666655543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.1e-09 Score=123.74 Aligned_cols=244 Identities=28% Similarity=0.279 Sum_probs=131.1
Q ss_pred CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739 (1102)
Q Consensus 660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 739 (1102)
..++.+.+..|.+.. +-..+..+++|+.|++.+|++.. +...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 334444444444432 12224445555555555555552 22224445555555555555543322 233334555555
Q ss_pred cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccc
Q 001313 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEG 818 (1102)
Q Consensus 740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~ 818 (1102)
++|.++. +. .+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..
T Consensus 148 ~~N~i~~------------------------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISD------------------------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchh------------------------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 5554431 11 34445667777777777665433 2 4556667777777777652
Q ss_pred cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313 819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898 (1102)
Q Consensus 819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1102)
. ..+..+..+..+++..|.++-.-+-.
T Consensus 201 i--~~~~~~~~l~~~~l~~n~i~~~~~l~--------------------------------------------------- 227 (414)
T KOG0531|consen 201 I--EGLDLLKKLVLLSLLDNKISKLEGLN--------------------------------------------------- 227 (414)
T ss_pred c--cchHHHHHHHHhhcccccceeccCcc---------------------------------------------------
Confidence 2 22333344444466666654211100
Q ss_pred ccCCcCC--CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCccc---Cchh-
Q 001313 899 YQGRVPS--LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ- 972 (1102)
Q Consensus 899 ~~~~~~~--~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~- 972 (1102)
... .|+.+++++|++. .++..+..++.+..|++++|++...- .+.....+..+.++.|++... .+..
T Consensus 228 ----~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 228 ----ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred ----cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence 000 2567788888876 33355667778888888888887432 344556777778888877622 1111
Q ss_pred hhcCCCCCEEEcccCcCcccCC
Q 001313 973 LVELNTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 973 l~~l~~L~~l~ls~N~l~~~~p 994 (1102)
......+....+..|+.....+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccCccccccc
Confidence 4456677778888887766544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=6.4e-09 Score=83.13 Aligned_cols=60 Identities=48% Similarity=0.646 Sum_probs=56.7
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcC
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 965 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 965 (1102)
.|+.|++++|+++...+..|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 588999999999977778999999999999999999999999999999999999999986
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.3e-09 Score=105.13 Aligned_cols=67 Identities=27% Similarity=0.227 Sum_probs=43.4
Q ss_pred HHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchh---ccCCCCCcEEEcCCCc
Q 001313 352 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC---LANMTSLRILDVSSNQ 422 (1102)
Q Consensus 352 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~ 422 (1102)
.+.+...+|+|.+||+++|.-... .....+.+++.|++|.++.|.. .+|.. +...++|.+|++.++-
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 334444478888888887653222 3334667778888888887753 45543 4566788888888773
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=9.3e-09 Score=118.37 Aligned_cols=151 Identities=34% Similarity=0.437 Sum_probs=91.4
Q ss_pred CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313 99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR 178 (1102)
Q Consensus 99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 178 (1102)
.+..++.+++..|.+.... ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence 4555566666666655411 235667777777777777664 222266677777777777777642 3556666
Q ss_pred CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhh-HhhhccCCCcEEEccCCcCCCCCchhhccCCCCC
Q 001313 179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSIL-SSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 257 (1102)
Q Consensus 179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 257 (1102)
.|+.|++++|.+..+ ..+..++.|+.+++++|.+...-+ . +..+.+++.+.+.+|.+. .+ ..+..+..+
T Consensus 141 ~L~~L~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i--~~~~~~~~l 210 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EI--EGLDLLKKL 210 (414)
T ss_pred chhhheeccCcchhc------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cc--cchHHHHHH
Confidence 677777777777666 455667777777777777665333 2 466667777777777654 11 233344444
Q ss_pred cEEecccCccC
Q 001313 258 EELDMSYNEID 268 (1102)
Q Consensus 258 ~~L~L~~n~l~ 268 (1102)
..+++..|.++
T Consensus 211 ~~~~l~~n~i~ 221 (414)
T KOG0531|consen 211 VLLSLLDNKIS 221 (414)
T ss_pred HHhhcccccce
Confidence 44455555554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.50 E-value=1.6e-07 Score=115.23 Aligned_cols=130 Identities=25% Similarity=0.258 Sum_probs=78.9
Q ss_pred CCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc--CCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccC
Q 001313 100 FQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL--FNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSL 177 (1102)
Q Consensus 100 ~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 177 (1102)
....|...+-++.+...... ...+.|++|-+.+|. +.......|..++.|++|||++|.-.+.. |..++.|
T Consensus 522 ~~~~rr~s~~~~~~~~~~~~------~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L-P~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIAGS------SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL-PSSIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhccCC------CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC-ChHHhhh
Confidence 34556666555555433221 234467777776664 33333444666777777777776543332 4667777
Q ss_pred CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc
Q 001313 178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR 241 (1102)
Q Consensus 178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 241 (1102)
-+||+|+++++.+... |..++++..|.+|++..+.....++.....+++|++|.+....
T Consensus 595 i~LryL~L~~t~I~~L-----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHL-----PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccCCCcccc-----chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777777776644 4567777777777777766555555556667777777765544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.6e-08 Score=100.31 Aligned_cols=232 Identities=22% Similarity=0.233 Sum_probs=140.1
Q ss_pred CCcEEeCCCCcCCcchhHhhhcCC--CcCEEEcCCCcccCCCChhhhc-cCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313 130 NLKMLNLVGNLFNNSILSSLARLS--SLTSLDLSANRLKGSIDIKELD-SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206 (1102)
Q Consensus 130 ~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 206 (1102)
.-+.||+.+-.+. |..++.+. ...++.+........--.+.+. --+.||+|||+...++.... ...+..|.
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl---~~iLs~C~ 210 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTL---HGILSQCS 210 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHH---HHHHHHHH
Confidence 3456777776665 55555553 3334444332222110011111 11347888888777654321 13456778
Q ss_pred CcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc-CCCCCchhhccCCCCCcEEecccCccCCcchhhhhc-cccccce
Q 001313 207 NLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR-LEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACS-GLRKLSY 284 (1102)
Q Consensus 207 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~ 284 (1102)
+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++.....-.+.+|+.|++|+++||......+..... -.+.++.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 88888888888888888888888888888888764 221111123577888888888888766554443333 3456777
Q ss_pred eccccccccCc-hhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCc
Q 001313 285 LHLLRVGIRDG-SKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQ 363 (1102)
Q Consensus 285 L~l~~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 363 (1102)
|+++++.-.-. ..+..-...+|+|.+|||++|...+. ..+..+..++.|+++.++.|-......+.. ....|.|.
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~--l~s~psl~ 366 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLE--LNSKPSLV 366 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeee--eccCcceE
Confidence 77776643322 23444456789999999998865433 334557788899999988884211111111 12378999
Q ss_pred EEecccCc
Q 001313 364 YLSLSNSS 371 (1102)
Q Consensus 364 ~L~L~~~~ 371 (1102)
+|++.+|-
T Consensus 367 yLdv~g~v 374 (419)
T KOG2120|consen 367 YLDVFGCV 374 (419)
T ss_pred EEEecccc
Confidence 99988764
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=2.4e-08 Score=105.52 Aligned_cols=262 Identities=17% Similarity=0.166 Sum_probs=146.8
Q ss_pred CCCcEEeCCCCcCCc--chhHhhhcCCCcCEEEcCCCcccCCCChhhh-ccCCCCcEEEcCCCc-CCcccccCCccccCC
Q 001313 129 SNLKMLNLVGNLFNN--SILSSLARLSSLTSLDLSANRLKGSIDIKEL-DSLRDLEKLNIGRNM-IDKFVVSKGPKRLSR 204 (1102)
Q Consensus 129 ~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~ 204 (1102)
..||.|.++|+.-.+ .+-..-.+++++++|++.+|..........+ ..+++|++|++..|. ++.... ......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L---k~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL---KYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH---HHHHHh
Confidence 468888888876432 2334456789999999988864322222333 457888888888743 333211 012346
Q ss_pred CCCcCEEEcCCCc-CChh-hhHhhhccCCCcEEEccCCcCCCCCchhhc----cCCCCCcEEecccC-ccCCcchhhhhc
Q 001313 205 LNNLKVFDLSGNL-FNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEF----DSLSNLEELDMSYN-EIDNFEVPQACS 277 (1102)
Q Consensus 205 l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l----~~l~~L~~L~L~~n-~l~~~~~~~~~~ 277 (1102)
+++|++|+++++. +++. +-.-..++..++.+.+.+|. ..+.+.+ +.+..+.++++..+ .+++.....+..
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 7888888888874 3331 11234455667777666653 2232233 23344556665454 456666667777
Q ss_pred cccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccc-ccccccceeecccchhhhchhhHHHhh
Q 001313 278 GLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGF-PHFKSLKELYMDDARIALNTSFLQIIG 356 (1102)
Q Consensus 278 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~ 356 (1102)
.+..++.+..+++...+...+..--...++|+.|.++.|+..... .+..+ .+++.|+.+++.++....++++.+...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~--~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR--GFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh--hhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 788888888877766544444444456788888888887642211 11111 235666666666665544444433333
Q ss_pred ccCCCCcEEecccCcCcCCc--ccccCCccCCCCccEEEcCCCcC
Q 001313 357 ESMPSIQYLSLSNSSVSNNS--RTLDQGLCPLVHLQELHMADNDL 399 (1102)
Q Consensus 357 ~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~l~~L~~L~L~~n~l 399 (1102)
. ++.|++|.+++|...... ..+...-+....|+.+.|++++.
T Consensus 370 ~-C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 370 N-CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred C-CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 3 666666666666532221 11111223344455555555543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=5.6e-08 Score=97.88 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCC-cchhccCCCCCcEEEcCCCcccc
Q 001313 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS-LPWCLANMTSLRILDVSSNQLIG 425 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~ 425 (1102)
+|++..+-+..|.+...... ++...++.+--|+|+.+++... --..+.++++|+.|.++++++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 67777777776665443222 3455566666777777766542 12446667777777777776654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=2.5e-08 Score=112.00 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.0
Q ss_pred cCCCCCCCCEEeCCCCCCCC
Q 001313 96 LFTPFQQLESLDLRDNDIAG 115 (1102)
Q Consensus 96 ~~~~~~~L~~L~Ls~~~~~~ 115 (1102)
.+..|+.||+|.|.+|++..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred eeccccceeeEEecCcchhh
Confidence 34678999999999998764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=2.2e-07 Score=92.51 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=9.8
Q ss_pred CCCCCCEEeCCCCCcc
Q 001313 304 SFPSLNTLDLSYNNFT 319 (1102)
Q Consensus 304 ~l~~L~~L~Ls~n~~~ 319 (1102)
..|+|..|...+|.+.
T Consensus 270 ~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 270 FVPNLMPLPGDYNERR 285 (388)
T ss_pred cCCCccccccchhhhc
Confidence 3566666666666553
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=4.3e-07 Score=90.47 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCCcEEecccCcCcCCccc-ccCCccCCCCccEEEcCCCcCCCCcchhc------cCCCCCcEEEcCCCcc
Q 001313 359 MPSIQYLSLSNSSVSNNSRT-LDQGLCPLVHLQELHMADNDLRGSLPWCL------ANMTSLRILDVSSNQL 423 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l 423 (1102)
+.+|+.|++.+|.++-.... +...++..+.|++|.+.+|-++.....++ ...++|..|-..+|..
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 56666666666665533211 11133444456666666665544322221 1234455555555543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=1.1e-07 Score=106.98 Aligned_cols=159 Identities=28% Similarity=0.311 Sum_probs=100.5
Q ss_pred hhcCCCCCcEEeCCCCcCCc---c--hhHhh--------------------hc------CCCcCEEEcCCCcccCCCChh
Q 001313 124 RLSRLSNLKMLNLVGNLFNN---S--ILSSL--------------------AR------LSSLTSLDLSANRLKGSIDIK 172 (1102)
Q Consensus 124 ~l~~l~~L~~L~Ls~n~~~~---~--~~~~l--------------------~~------l~~L~~L~Ls~n~l~~~~~~~ 172 (1102)
.+..++.||+|.|.++.+.. . +-..+ +. .-.|.+.+.++|.++.. -.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m--D~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM--DE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH--HH
Confidence 35678899999999987753 0 00000 11 12344555666665522 24
Q ss_pred hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhcc
Q 001313 173 ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFD 252 (1102)
Q Consensus 173 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 252 (1102)
.+.-++.|+.|+|++|++... ..+..|++|++|||++|.+....--....+. |+.|.+++|.++ . ...+.
T Consensus 182 SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-t--L~gie 251 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-T--LRGIE 251 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH-h--hhhHH
Confidence 566677788888888887766 5677788888888888877653322333444 788888888765 2 23567
Q ss_pred CCCCCcEEecccCccCCcchhhhhccccccceeccccccccC
Q 001313 253 SLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRD 294 (1102)
Q Consensus 253 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 294 (1102)
++++|+.||+++|-+.+..-......+..|+.|.+.+|.+..
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777888888888877665555555556666666666665543
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=3e-07 Score=97.44 Aligned_cols=238 Identities=17% Similarity=0.137 Sum_probs=113.6
Q ss_pred CcCEEEcCCCcCChh--hhHhhhccCCCcEEEccCCcCCCCCchh-hccCCCCCcEEecccC-ccCCcchhhhhcccccc
Q 001313 207 NLKVFDLSGNLFNNS--ILSSLARLSSLRSLLLYDNRLEGSIDVK-EFDSLSNLEELDMSYN-EIDNFEVPQACSGLRKL 282 (1102)
Q Consensus 207 ~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L 282 (1102)
.|+.|.++++.-.+. .-..-.+++++++|.+.++.......-. .-..+++|++|++..| .+++.........
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g---- 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG---- 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh----
Confidence 455666666543221 1122344566666666555422111111 1134555666665553 3343333333444
Q ss_pred ceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCC
Q 001313 283 SYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSI 362 (1102)
Q Consensus 283 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L 362 (1102)
+++|++|++++|....... .......++.++.+...+|.-.....+.. +...++.+
T Consensus 215 ----------------------C~kL~~lNlSwc~qi~~~g-v~~~~rG~~~l~~~~~kGC~e~~le~l~~-~~~~~~~i 270 (483)
T KOG4341|consen 215 ----------------------CRKLKYLNLSWCPQISGNG-VQALQRGCKELEKLSLKGCLELELEALLK-AAAYCLEI 270 (483)
T ss_pred ----------------------hhhHHHhhhccCchhhcCc-chHHhccchhhhhhhhcccccccHHHHHH-HhccChHh
Confidence 4555555555544322210 00112334445555555553222222222 22236667
Q ss_pred cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCc-chh-ccCCCCCcEEEcCCCccccccCCccc-ccCCccC
Q 001313 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWC-LANMTSLRILDVSSNQLIGSISSSPL-IHLTSIE 439 (1102)
Q Consensus 363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~-l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~l~~L~ 439 (1102)
.++++.+|....... +...-..+..|+.++.+++...+.. -.. -.+..+|+.|.++.|+.-+......+ .+++.|+
T Consensus 271 ~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 777766764322211 1112244677888888777543211 112 24567888888888863322222222 3567788
Q ss_pred eeecCCcccccccCccc-cccCCcceEEecCCCcc
Q 001313 440 DLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEI 473 (1102)
Q Consensus 440 ~L~L~~n~l~~~~~~~~-l~~l~~L~~L~l~~n~l 473 (1102)
.+++..+.......+.. -.+++.|+.+.++.+..
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence 88888776543222222 24667777777765543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=9e-07 Score=89.44 Aligned_cols=213 Identities=19% Similarity=0.232 Sum_probs=96.1
Q ss_pred CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313 99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR 178 (1102)
Q Consensus 99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 178 (1102)
..++++.|||.+|.++.-.. ...-+.++|+|++|+++.|.+...+-.--..+.+|++|-|.+..+.-......+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 34556666666665543221 1233455666666666666554221111123455666666555543222223344555
Q ss_pred CCcEEEcCCCcCCcccccCCccccC-CCCCcCEEEcCCCcCCh--hhhHhhhccCCCcEEEccCCcCCCCCchhhccCCC
Q 001313 179 DLEKLNIGRNMIDKFVVSKGPKRLS-RLNNLKVFDLSGNLFNN--SILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLS 255 (1102)
Q Consensus 179 ~L~~L~Ls~n~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 255 (1102)
.++.|.++.|.+.-...+. .... --+.+++|.+-.|.... .....-.-++++..+.+..|.+......+.+..++
T Consensus 147 ~vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhhhccchhhhhcccc--ccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 5555555555332221110 0000 11233333333332211 00000112345555555555444333333444445
Q ss_pred CCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccc---ccccccccc
Q 001313 256 NLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT---TTTQGFPHF 332 (1102)
Q Consensus 256 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~---~~~~~~~~l 332 (1102)
.+..|+|+.+++.+. +-...+..+|.|..|.++++++.+... ...--++.+
T Consensus 225 ~~~~LnL~~~~idsw--------------------------asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSW--------------------------ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred cchhhhhcccccccH--------------------------HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 555555555555433 334566777777777777777654321 112234566
Q ss_pred cccceeecc
Q 001313 333 KSLKELYMD 341 (1102)
Q Consensus 333 ~~L~~L~l~ 341 (1102)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 777776644
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.5e-07 Score=83.87 Aligned_cols=57 Identities=25% Similarity=0.446 Sum_probs=26.6
Q ss_pred ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
+.++|++|.++ .+|.++..++.|+.||++.|.+. ..|..|..|.++-.||..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444444444 34444444455555555555444 33444444444444444444444
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=5.6e-06 Score=99.17 Aligned_cols=153 Identities=24% Similarity=0.272 Sum_probs=108.2
Q ss_pred CCCCcEEeCCCCc-CCcchhHhhhc-CCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCC
Q 001313 128 LSNLKMLNLVGNL-FNNSILSSLAR-LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRL 205 (1102)
Q Consensus 128 l~~L~~L~Ls~n~-~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l 205 (1102)
-.+|++|+++|.. +....|..++. ||+|++|.+++-.+...--.....++++|..||+|+++++.. .+++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhcc
Confidence 4679999998865 33445555654 799999999887765321123446789999999999998877 678899
Q ss_pred CCcCEEEcCCCcCCh-hhhHhhhccCCCcEEEccCCcCCCCC--c---hhhccCCCCCcEEecccCccCCcchhhhhccc
Q 001313 206 NNLKVFDLSGNLFNN-SILSSLARLSSLRSLLLYDNRLEGSI--D---VKEFDSLSNLEELDMSYNEIDNFEVPQACSGL 279 (1102)
Q Consensus 206 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 279 (1102)
++|++|.+.+-.+.. .....+.++++|++||+|........ . .+.-..+|+|+.||.|++.+............
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 999999888877764 44557888999999999887654221 1 11224588999999998887765555555555
Q ss_pred cccceec
Q 001313 280 RKLSYLH 286 (1102)
Q Consensus 280 ~~L~~L~ 286 (1102)
++|+.+.
T Consensus 275 ~~L~~i~ 281 (699)
T KOG3665|consen 275 PNLQQIA 281 (699)
T ss_pred ccHhhhh
Confidence 5555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=8.6e-06 Score=97.61 Aligned_cols=153 Identities=23% Similarity=0.327 Sum_probs=102.1
Q ss_pred CCCCEEeCCCCCCCCcccchhhhhhc-CCCCCcEEeCCCCcCCc-chhHhhhcCCCcCEEEcCCCcccCCCChhhhccCC
Q 001313 101 QQLESLDLRDNDIAGCVENEGLERLS-RLSNLKMLNLVGNLFNN-SILSSLARLSSLTSLDLSANRLKGSIDIKELDSLR 178 (1102)
Q Consensus 101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 178 (1102)
++||+||+++...-... ....++ .||+||.|.+++-.+.. .......++++|..||+|+++++. ...+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~---W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG---WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhcc---HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC---cHHHhccc
Confidence 57888888875432111 122333 48899999998877643 334455678999999999988873 36788899
Q ss_pred CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhh------hHhhhccCCCcEEEccCCcCCCCCchhhcc
Q 001313 179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI------LSSLARLSSLRSLLLYDNRLEGSIDVKEFD 252 (1102)
Q Consensus 179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 252 (1102)
+|+.|.+.+-.+..... ...+.+|++|++||+|........ .+.-..+|+|+.||.+++.+.+.+-...+.
T Consensus 196 nLq~L~mrnLe~e~~~~---l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQD---LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred cHHHHhccCCCCCchhh---HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 99988887766654311 146778999999999886554321 122234789999999988776554444445
Q ss_pred CCCCCcEEec
Q 001313 253 SLSNLEELDM 262 (1102)
Q Consensus 253 ~l~~L~~L~L 262 (1102)
..++|+.+..
T Consensus 273 sH~~L~~i~~ 282 (699)
T KOG3665|consen 273 SHPNLQQIAA 282 (699)
T ss_pred hCccHhhhhh
Confidence 5566665543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.9e-06 Score=77.05 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=53.0
Q ss_pred CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641 (1102)
Q Consensus 562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 641 (1102)
..|+.+++++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..++. +.++-.|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 34555666666665 556655554556666777777666 45666666667777777777666 55655553 5566666
Q ss_pred EccccccCCc
Q 001313 642 ALSNNNLEGH 651 (1102)
Q Consensus 642 ~L~~n~l~~~ 651 (1102)
+..+|.+..+
T Consensus 129 ds~~na~~ei 138 (177)
T KOG4579|consen 129 DSPENARAEI 138 (177)
T ss_pred cCCCCccccC
Confidence 6666655443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2e-05 Score=57.26 Aligned_cols=36 Identities=42% Similarity=0.729 Sum_probs=17.7
Q ss_pred cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=6e-05 Score=72.59 Aligned_cols=85 Identities=21% Similarity=0.299 Sum_probs=56.7
Q ss_pred CCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313 179 DLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258 (1102)
Q Consensus 179 ~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 258 (1102)
....+||+.|.+... ..|..++.|.+|.+..|+|+...|.--..+++|+.|.|.+|.+....+...+..|++|+
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 344455555555444 45666777777777777777655555555677888888888776544555677888888
Q ss_pred EEecccCccCC
Q 001313 259 ELDMSYNEIDN 269 (1102)
Q Consensus 259 ~L~L~~n~l~~ 269 (1102)
+|.+-+|.++.
T Consensus 117 ~Ltll~Npv~~ 127 (233)
T KOG1644|consen 117 YLTLLGNPVEH 127 (233)
T ss_pred eeeecCCchhc
Confidence 88888887653
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.0004 Score=76.57 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=8.1
Q ss_pred CCCCcEEEccCCCCc
Q 001313 537 NTKLRQLSLVNDSLV 551 (1102)
Q Consensus 537 ~~~L~~L~L~~n~l~ 551 (1102)
+..++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 455555555555444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00024 Score=78.23 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=22.9
Q ss_pred ccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCc
Q 001313 755 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 814 (1102)
Q Consensus 755 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 814 (1102)
..++.|++++|.++ .+|. + ..+|+.|.++++.--..+|+.+. ++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 44555555555443 2331 1 12355555554332223443331 34555555554
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=9e-05 Score=53.88 Aligned_cols=36 Identities=36% Similarity=0.569 Sum_probs=18.9
Q ss_pred CCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555556666666665554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.44 E-value=0.00029 Score=66.59 Aligned_cols=83 Identities=25% Similarity=0.242 Sum_probs=30.4
Q ss_pred hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCc
Q 001313 582 IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 661 (1102)
Q Consensus 582 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 661 (1102)
.+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333344555555543 334344445555555555555443 33 44444444444455554433 222222333333444
Q ss_pred cCeeecc
Q 001313 662 LIWLQLE 668 (1102)
Q Consensus 662 L~~L~L~ 668 (1102)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00038 Score=65.71 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=67.5
Q ss_pred CcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCC
Q 001313 604 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 683 (1102)
Q Consensus 604 ~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 683 (1102)
..+|.++++|+.+.+.. .+. .++...|.++++|+.+.+.++ +..+....|.++++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45788888888888875 566 788888888888888888775 7766667777777788888865 4443445567778
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCccc
Q 001313 684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735 (1102)
Q Consensus 684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 735 (1102)
++|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88888888665 443445566676 777777765 44445556676666653
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00029 Score=68.06 Aligned_cols=109 Identities=26% Similarity=0.256 Sum_probs=59.2
Q ss_pred CCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCC
Q 001313 101 QQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDL 180 (1102)
Q Consensus 101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 180 (1102)
.....+||++|++.... .|..+++|.+|.|+.|.|+..-|.--.-+++|++|.|.+|++....+...+..+++|
T Consensus 42 d~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhcc------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 34556777777665432 355666677777777776643333333356677777777766544444555666666
Q ss_pred cEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCC
Q 001313 181 EKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGN 216 (1102)
Q Consensus 181 ~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 216 (1102)
++|.+-+|.+....-- -.-.+..+++|++||.+.-
T Consensus 116 ~~Ltll~Npv~~k~~Y-R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNY-RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCc-eeEEEEecCcceEeehhhh
Confidence 6666666655433110 0012345555555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00029 Score=71.23 Aligned_cols=107 Identities=27% Similarity=0.321 Sum_probs=58.7
Q ss_pred CCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCC--cCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhcc
Q 001313 99 PFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGN--LFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDS 176 (1102)
Q Consensus 99 ~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 176 (1102)
.+..|+.|++.+..++.. ..+..+++|++|.+|.| .+.+.++.....+++|++|++++|++......
T Consensus 41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl----- 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL----- 109 (260)
T ss_pred cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-----
Confidence 445556666665555432 23556777777777777 44444444445557777777777766521112
Q ss_pred CCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCCh---hhhHhhhccCCCcEEEccC
Q 001313 177 LRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNN---SILSSLARLSSLRSLLLYD 239 (1102)
Q Consensus 177 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~ 239 (1102)
..+..+.+|..|++..|..+. .--..+.-+++|++|+-..
T Consensus 110 -----------------------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 110 -----------------------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred -----------------------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 233444555555555554433 2223455667777776443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.0005 Score=69.60 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=43.1
Q ss_pred cccCCCCCcCEEEcCCC--cCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCC
Q 001313 200 KRLSRLNNLKVFDLSGN--LFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDN 269 (1102)
Q Consensus 200 ~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 269 (1102)
..+-.+++|++|.++.| ++.+.++.....+++|++|++++|++...-....+..+.+|..|++..|..+.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 34555666666666666 44444444445557777777777776532223355666777788887776553
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.00059 Score=81.32 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=9.4
Q ss_pred cCCCCcEEecccCc
Q 001313 358 SMPSIQYLSLSNSS 371 (1102)
Q Consensus 358 ~l~~L~~L~L~~~~ 371 (1102)
.+++++.+.+..+.
T Consensus 360 ~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG 373 (482)
T ss_pred cCCCcchhhhhhhh
Confidence 36777777776665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.00014 Score=73.40 Aligned_cols=101 Identities=26% Similarity=0.317 Sum_probs=58.0
Q ss_pred CCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCC
Q 001313 128 LSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN 207 (1102)
Q Consensus 128 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~ 207 (1102)
+.+.+.|+.-||.+++ ..-..+++.|++|.||-|+|+. ...+..|++|++|+|..|.|..+.. ...+.++++
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldE---L~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDE---LEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHH---HHHHhcCch
Confidence 4455566666666554 2334556666666666666653 2456666666666666666655532 244566777
Q ss_pred cCEEEcCCCcCChhhh-----HhhhccCCCcEEE
Q 001313 208 LKVFDLSGNLFNNSIL-----SSLARLSSLRSLL 236 (1102)
Q Consensus 208 L~~L~Ls~n~l~~~~~-----~~l~~l~~L~~L~ 236 (1102)
|+.|.|..|.-.+..+ ..+.-+++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777665443222 2344556666654
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00062 Score=81.15 Aligned_cols=67 Identities=24% Similarity=0.203 Sum_probs=33.5
Q ss_pred cCCCCCcEEecccCc-cCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCc
Q 001313 252 DSLSNLEELDMSYNE-IDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNF 318 (1102)
Q Consensus 252 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~ 318 (1102)
..+++|+.|+++++. +++.........++.|+.|.+..|...+...+......++.|++|++++|..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 334555555555555 4444444444444555555544443323334444445566666666666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00036 Score=70.46 Aligned_cols=101 Identities=32% Similarity=0.362 Sum_probs=69.8
Q ss_pred CCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChh-hhHhhhccC
Q 001313 152 LSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNS-ILSSLARLS 230 (1102)
Q Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~ 230 (1102)
+.+.+.|+.-+|.+. ++.-..+++.|++|.|+-|.|+.. ..+..|++|++|+|..|.|.+. -..-+.+++
T Consensus 18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 556677888888776 345567788888888888888777 4577888888888888877652 123466777
Q ss_pred CCcEEEccCCcCCCCCc----hhhccCCCCCcEEe
Q 001313 231 SLRSLLLYDNRLEGSID----VKEFDSLSNLEELD 261 (1102)
Q Consensus 231 ~L~~L~L~~n~l~~~~~----~~~l~~l~~L~~L~ 261 (1102)
+|+.|-|..|.-.|..+ ...+.-+++|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777776554433 22355667777665
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.0098 Score=35.80 Aligned_cols=18 Identities=50% Similarity=0.694 Sum_probs=8.8
Q ss_pred CCEEeCCCCcCcccCchhh
Q 001313 955 IESLDLSYNKLSWKIPYQL 973 (1102)
Q Consensus 955 L~~L~Ls~N~l~~~~p~~l 973 (1102)
|+.|||++|+|+ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.0072 Score=36.38 Aligned_cols=20 Identities=60% Similarity=0.908 Sum_probs=11.6
Q ss_pred CCEEECCCCCCCCCCcccccC
Q 001313 931 IQTLNLSHNNLAGPIPSTFSN 951 (1102)
Q Consensus 931 L~~L~Ls~N~l~~~~p~~~~~ 951 (1102)
|++|||++|+|+ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 55555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.70 E-value=0.0011 Score=76.28 Aligned_cols=174 Identities=26% Similarity=0.277 Sum_probs=75.8
Q ss_pred cCCCCCCCCEEeCCCCCCCCcccchhhhhhcCC-CCCcEEeCCCCcCCc----chhHhhhcCCCcCEEEcCCCcccCC--
Q 001313 96 LFTPFQQLESLDLRDNDIAGCVENEGLERLSRL-SNLKMLNLVGNLFNN----SILSSLARLSSLTSLDLSANRLKGS-- 168 (1102)
Q Consensus 96 ~~~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~-- 168 (1102)
.+....+|+.|++++|.+.+.........+... ..|++|++..|.+++ .+...+....+++.+|++.|.+...
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 344555666666666665522221112222222 445555655555442 3344455556666666666654211
Q ss_pred -CChhhhc----cCCCCcEEEcCCCcCCcccccCCccccCCCCC-cCEEEcCCCcCChhh----hHhhhcc-CCCcEEEc
Q 001313 169 -IDIKELD----SLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNN-LKVFDLSGNLFNNSI----LSSLARL-SSLRSLLL 237 (1102)
Q Consensus 169 -~~~~~l~----~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~----~~~l~~l-~~L~~L~L 237 (1102)
.....+. ...++++|++++|.++..........+...+. ++.|++..|.+.+.. ...+..+ ..++++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 0011112 24455555555555543322222223333333 444555555554321 1222233 34455555
Q ss_pred cCCcCCCCCc---hhhccCCCCCcEEecccCccCC
Q 001313 238 YDNRLEGSID---VKEFDSLSNLEELDMSYNEIDN 269 (1102)
Q Consensus 238 ~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~ 269 (1102)
+.|.+...-. .+.+..++.++++.++.|.+.+
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5555442111 1223344455555555555443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.57 E-value=0.0015 Score=75.27 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhh----cC-CCcCEEEcCCCcccCCCC---hhhh
Q 001313 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA----RL-SSLTSLDLSANRLKGSID---IKEL 174 (1102)
Q Consensus 103 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~---~~~l 174 (1102)
++.|.|.+|.+...........+...++|..|++++|.+.+.-...++ .. ..|++|++..|.+++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677777777776654444445566677777777777776643222222 12 445566666666553311 1233
Q ss_pred ccCCCCcEEEcCCCcCC
Q 001313 175 DSLRDLEKLNIGRNMID 191 (1102)
Q Consensus 175 ~~l~~L~~L~Ls~n~~~ 191 (1102)
.....++.++++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 34555555666555553
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.95 E-value=0.11 Score=50.95 Aligned_cols=80 Identities=31% Similarity=0.412 Sum_probs=45.0
Q ss_pred CCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcC-CcchhHhhhc-CCCcCEEEcCCCcccCCCChhhhccCCCC
Q 001313 103 LESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLF-NNSILSSLAR-LSSLTSLDLSANRLKGSIDIKELDSLRDL 180 (1102)
Q Consensus 103 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 180 (1102)
++.+|-+++.|. ..|++.+.+++.++.|.+.+|.- .+...+.+++ .++|+.|++++|.-........+.++++|
T Consensus 103 IeaVDAsds~I~----~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSSIM----YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecCCchHH----HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 455666666554 23667777788888888877753 3323333433 36777777777743223233444455555
Q ss_pred cEEEcC
Q 001313 181 EKLNIG 186 (1102)
Q Consensus 181 ~~L~Ls 186 (1102)
+.|.+.
T Consensus 179 r~L~l~ 184 (221)
T KOG3864|consen 179 RRLHLY 184 (221)
T ss_pred HHHHhc
Confidence 554443
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.51 E-value=0.23 Score=27.61 Aligned_cols=13 Identities=69% Similarity=0.787 Sum_probs=5.3
Q ss_pred CCcEEEccCcccc
Q 001313 612 FLQFLDLSNNQLT 624 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~ 624 (1102)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.32 E-value=0.013 Score=58.10 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=71.6
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
..+.||++.|++.. ....|.-++.|..||+|.|++. ..|..++.+..+..+++..|.++ ..|.++...+.++++++-
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 46789999999873 4556788889999999999998 78999999999999999999998 789999999999999999
Q ss_pred cCcCc
Q 001313 986 YNNLS 990 (1102)
Q Consensus 986 ~N~l~ 990 (1102)
.|++.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 98864
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.48 E-value=0.38 Score=30.26 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=7.6
Q ss_pred CcCCEEECCCCCCCCC
Q 001313 929 TKIQTLNLSHNNLAGP 944 (1102)
Q Consensus 929 ~~L~~L~Ls~N~l~~~ 944 (1102)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.48 E-value=0.38 Score=30.26 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=7.6
Q ss_pred CcCCEEECCCCCCCCC
Q 001313 929 TKIQTLNLSHNNLAGP 944 (1102)
Q Consensus 929 ~~L~~L~Ls~N~l~~~ 944 (1102)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555533
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.09 E-value=0.46 Score=29.88 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=16.2
Q ss_pred CCCCcEEEccCcccccccchhHh
Q 001313 610 MNFLQFLDLSNNQLTGEIPEHLA 632 (1102)
Q Consensus 610 l~~L~~L~Ls~n~l~~~ip~~~~ 632 (1102)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356788888888887 7777665
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.09 E-value=0.46 Score=29.88 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=16.2
Q ss_pred CCCCcEEEccCcccccccchhHh
Q 001313 610 MNFLQFLDLSNNQLTGEIPEHLA 632 (1102)
Q Consensus 610 l~~L~~L~Ls~n~l~~~ip~~~~ 632 (1102)
+++|++|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356788888888887 7777665
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=0.23 Score=48.69 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=20.8
Q ss_pred CCCcCEEEcCCC-cCChhhhHhhhccCCCcEEEccC
Q 001313 205 LNNLKVFDLSGN-LFNNSILSSLARLSSLRSLLLYD 239 (1102)
Q Consensus 205 l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~ 239 (1102)
.++|+.|++++| +||+.....+.++++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356666666655 45555555666666666666554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.64 E-value=0.62 Score=28.62 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=12.4
Q ss_pred CCcCEEEcCCCcCChhhhHhhh
Q 001313 206 NNLKVFDLSGNLFNNSILSSLA 227 (1102)
Q Consensus 206 ~~L~~L~Ls~n~l~~~~~~~l~ 227 (1102)
++|++|++++|++++.....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5667777777776665555443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.35 E-value=0.78 Score=28.18 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=4.4
Q ss_pred CCcEEeCCCCcCC
Q 001313 130 NLKMLNLVGNLFN 142 (1102)
Q Consensus 130 ~L~~L~Ls~n~~~ 142 (1102)
+|++|+|++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444333
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.36 E-value=0.081 Score=52.60 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=70.8
Q ss_pred ccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCC
Q 001313 923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 1002 (1102)
Q Consensus 923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 1002 (1102)
.++......+.||++.|++- -.-..|+-++.|+.||+|.|++. ..|..+..+..+..+++..|+++- .|.+.++...
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCC
Confidence 45777889999999999987 44567888999999999999998 789999988888899999998874 4544566666
Q ss_pred CCccccCCCCCC
Q 001313 1003 FNESSYEGNPFL 1014 (1102)
Q Consensus 1003 ~~~~~~~gN~~l 1014 (1102)
......-+||+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 655566667643
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.36 E-value=3.5 Score=25.99 Aligned_cols=15 Identities=60% Similarity=0.829 Sum_probs=10.3
Q ss_pred CCcCCEEeCCCCcCc
Q 001313 952 LRNIESLDLSYNKLS 966 (1102)
Q Consensus 952 l~~L~~L~Ls~N~l~ 966 (1102)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.97 E-value=20 Score=40.41 Aligned_cols=64 Identities=30% Similarity=0.168 Sum_probs=28.4
Q ss_pred CcCEEEcCCCcccCCCCh--hhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcC
Q 001313 154 SLTSLDLSANRLKGSIDI--KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLF 218 (1102)
Q Consensus 154 ~L~~L~Ls~n~l~~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 218 (1102)
.+.++|++.|.....++- .....-.-+++++.+...+.-... ..+-..+.-++|+..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l-~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLL-TSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhc-ccccccccccccchhhhccCCC
Confidence 455666666655443321 111222345556655554432211 0112233445666666665543
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.27 E-value=10 Score=24.28 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=11.3
Q ss_pred CCcCEEEcCCCcCChhhhH
Q 001313 206 NNLKVFDLSGNLFNNSILS 224 (1102)
Q Consensus 206 ~~L~~L~Ls~n~l~~~~~~ 224 (1102)
++|++|||++|.+......
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 4566777777766554333
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.37 E-value=9 Score=24.10 Aligned_cols=17 Identities=59% Similarity=0.784 Sum_probs=11.4
Q ss_pred CCcEEEccCcccccccch
Q 001313 612 FLQFLDLSNNQLTGEIPE 629 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~ 629 (1102)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4667777777776 6664
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.27 E-value=68 Score=36.40 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=9.4
Q ss_pred ccEEEccCcccccCCC
Q 001313 734 LQILDISDNNISGSLP 749 (1102)
Q Consensus 734 L~~L~ls~n~l~~~~p 749 (1102)
+++|+++.|.+.|..-
T Consensus 356 ~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeEeeccccccccccc
Confidence 6666666666655443
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.79 E-value=20 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=24.3
Q ss_pred ECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313 935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967 (1102)
Q Consensus 935 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 967 (1102)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577777777777777777777777777776663
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=39.70 E-value=21 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhhhhcccchh
Q 001313 1053 TSYVIVIFGIVAVLYVNARWRRR 1075 (1102)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1102)
+.++++++++++++++.||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 33444444444445555667664
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.94 E-value=32 Score=21.46 Aligned_cols=11 Identities=55% Similarity=0.770 Sum_probs=5.4
Q ss_pred CCcCEEEcCCC
Q 001313 206 NNLKVFDLSGN 216 (1102)
Q Consensus 206 ~~L~~L~Ls~n 216 (1102)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.92 E-value=15 Score=50.88 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=33.4
Q ss_pred eCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 959 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 959 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
||++|+|+...+..|..+++|+.|+|++|++.|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 7999999987788899999999999999999997763
No 96
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.18 E-value=21 Score=31.06 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=7.3
Q ss_pred CCCcchhHHHHH
Q 001313 1 MGGSKSKMVVMF 12 (1102)
Q Consensus 1 ~~~~~~~~~~~~ 12 (1102)
|+ |++.+++.+
T Consensus 1 Ma-SK~~llL~l 11 (95)
T PF07172_consen 1 MA-SKAFLLLGL 11 (95)
T ss_pred Cc-hhHHHHHHH
Confidence 77 888666643
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.91 E-value=60 Score=22.55 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHhhh
Q 001313 1049 ITFTTSYVIVIFGIVAV 1065 (1102)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~ 1065 (1102)
.++.+|+++.+++++..
T Consensus 10 v~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYY 26 (38)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.65 E-value=53 Score=30.02 Aligned_cols=11 Identities=18% Similarity=0.042 Sum_probs=4.2
Q ss_pred hhhHHHHHHHH
Q 001313 1047 FFITFTTSYVI 1057 (1102)
Q Consensus 1047 ~~~~~~~~~~~ 1057 (1102)
..+++++.+++
T Consensus 67 ~~Ii~gv~aGv 77 (122)
T PF01102_consen 67 IGIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred eehhHHHHHHH
Confidence 33344433333
No 99
>PRK00523 hypothetical protein; Provisional
Probab=27.60 E-value=47 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhee
Q 001313 1050 TFTTSYVIVIFGIVAVLYVNARWRRRWF 1077 (1102)
Q Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1102)
+++++.+..++++++.+|+-|++..+|+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555666666666655554
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.52 E-value=44 Score=38.64 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=23.5
Q ss_pred cCCCCcEEecccC--cCcCCcccccCCccCCCCccEEEcCCCcCCCC
Q 001313 358 SMPSIQYLSLSNS--SVSNNSRTLDQGLCPLVHLQELHMADNDLRGS 402 (1102)
Q Consensus 358 ~l~~L~~L~L~~~--~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 402 (1102)
..|+|+.|+|++| .+.... .+ .--+...|++|.+.+|++...
T Consensus 242 ~apklk~L~LS~N~~~~~~~~-el--~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSES-EL--DKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hcchhheeecccchhhhcchh-hh--hhhcCCCHHHeeecCCccccc
Confidence 3778888888887 222211 10 111234577777777777543
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.92 E-value=47 Score=38.42 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.7
Q ss_pred CCCCcEEEccCCccc
Q 001313 586 LSRLTVFNISMNALD 600 (1102)
Q Consensus 586 l~~L~~L~Ls~n~l~ 600 (1102)
.+.+..++|++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 344555555555543
No 102
>PRK01844 hypothetical protein; Provisional
Probab=23.32 E-value=62 Score=26.16 Aligned_cols=23 Identities=9% Similarity=0.414 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhhhhhcccchhee
Q 001313 1055 YVIVIFGIVAVLYVNARWRRRWF 1077 (1102)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1102)
.+..++++++.+|+-|++..+|+
T Consensus 11 I~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666655544
No 103
>PF15050 SCIMP: SCIMP protein
Probab=22.09 E-value=75 Score=28.30 Aligned_cols=7 Identities=0% Similarity=0.207 Sum_probs=2.7
Q ss_pred hhhhHHH
Q 001313 1046 IFFITFT 1052 (1102)
Q Consensus 1046 ~~~~~~~ 1052 (1102)
|++++++
T Consensus 9 WiiLAVa 15 (133)
T PF15050_consen 9 WIILAVA 15 (133)
T ss_pred HHHHHHH
Confidence 3333333
Done!