Query 001313
Match_columns 1102
No_of_seqs 953 out of 5623
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-88 1.3E-92 845.0 54.0 730 24-1027 6-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-68 7.1E-73 666.7 48.4 656 130-1013 51-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.2E-56 2.1E-60 550.2 52.5 394 538-1002 222-633 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-56 1.5E-60 551.5 49.3 574 359-1019 24-627 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-52 1.1E-56 526.0 41.2 546 359-1024 23-589 (844)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-50 4.8E-55 495.3 45.7 494 361-994 34-564 (606)
7 3t6q_A CD180 antigen; protein- 100.0 6.5E-51 2.2E-55 498.3 41.3 304 588-970 255-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-50 5.8E-55 510.3 44.5 528 364-1020 8-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.6E-50 2.9E-54 488.4 37.2 531 363-1019 14-563 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-49 1.4E-53 482.4 39.3 513 359-995 31-563 (606)
11 4eco_A Uncharacterized protein 100.0 7.8E-50 2.7E-54 486.9 26.7 331 538-966 249-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 8.4E-47 2.9E-51 465.3 35.9 509 24-744 263-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 3.4E-45 1.2E-49 444.7 36.7 397 536-995 122-536 (570)
14 4eco_A Uncharacterized protein 100.0 1.6E-45 5.6E-50 448.8 21.7 356 571-993 192-603 (636)
15 2z63_A TOLL-like receptor 4, v 100.0 7.8E-44 2.7E-48 432.7 33.0 441 514-1019 29-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-43 4.2E-48 428.5 34.0 465 387-995 26-515 (549)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-43 8.2E-48 426.0 32.0 472 359-970 25-514 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 2.5E-43 8.4E-48 434.5 30.0 356 577-1018 480-870 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-43 9.6E-48 421.9 25.3 455 363-995 3-486 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-42 5.8E-47 415.1 25.0 436 513-1019 21-486 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-40 7.7E-45 408.4 39.2 165 777-994 417-584 (635)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-40 1.2E-44 406.6 38.7 514 388-1019 53-585 (635)
23 3v47_A TOLL-like receptor 5B a 100.0 4E-40 1.4E-44 387.8 29.1 376 565-1000 13-417 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.5E-38 1.2E-42 380.6 30.6 412 513-995 31-515 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2.3E-38 7.8E-43 368.2 27.2 321 386-842 10-331 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 6.7E-38 2.3E-42 368.8 30.7 367 538-971 30-413 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.4E-38 2.2E-42 378.3 29.8 414 536-1019 29-515 (562)
28 1jl5_A Outer protein YOPM; leu 100.0 4.7E-37 1.6E-41 357.1 28.9 377 512-995 10-416 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 7.6E-36 2.6E-40 353.0 25.6 323 565-969 14-336 (477)
30 1ogq_A PGIP-2, polygalacturona 100.0 5.1E-36 1.7E-40 331.8 22.4 296 25-447 1-302 (313)
31 1o6v_A Internalin A; bacterial 100.0 2.5E-34 8.7E-39 338.0 32.9 347 536-992 44-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-35 2E-39 339.8 27.2 354 536-996 40-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 4E-34 1.4E-38 336.3 33.1 348 512-971 45-392 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1.4E-34 4.6E-39 342.3 28.1 345 590-1017 14-359 (477)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.8E-34 1.3E-38 332.9 28.0 271 586-975 126-396 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 7.4E-34 2.5E-38 326.3 28.1 333 612-1018 46-378 (390)
37 3oja_B Anopheles plasmodium-re 100.0 3.9E-34 1.3E-38 346.8 26.6 333 612-1018 52-384 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 5.2E-34 1.8E-38 315.7 17.2 258 684-1021 50-311 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 7.7E-32 2.6E-36 309.5 27.9 314 561-971 44-357 (390)
40 4fmz_A Internalin; leucine ric 100.0 4E-31 1.4E-35 298.7 29.3 304 586-990 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.5E-31 8.5E-36 322.2 27.6 315 561-972 50-364 (597)
42 4fmz_A Internalin; leucine ric 100.0 1.2E-30 4E-35 294.9 29.3 304 561-966 43-346 (347)
43 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.3E-34 283.9 29.3 291 612-988 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-30 2.6E-34 285.8 26.6 288 612-988 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 3.1E-29 1.1E-33 280.6 28.6 252 562-849 31-284 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 8E-34 281.8 26.7 250 563-849 34-285 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-33 1.4E-37 328.6 -5.8 363 562-992 3-413 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-32 9.3E-37 321.6 -7.1 309 513-841 3-354 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 1.8E-28 6.3E-33 277.1 15.7 210 609-846 29-240 (353)
50 2z66_A Variable lymphocyte rec 100.0 5.4E-28 1.8E-32 267.5 19.0 273 664-1017 11-290 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 7.3E-28 2.5E-32 272.2 14.6 281 634-995 29-319 (353)
52 2z66_A Variable lymphocyte rec 99.9 2.6E-27 8.9E-32 262.0 16.6 169 775-996 121-293 (306)
53 4fcg_A Uncharacterized protein 99.9 9.8E-27 3.3E-31 258.8 20.6 235 658-989 79-313 (328)
54 3zyj_A Leucine-rich repeat-con 99.9 2.6E-26 8.9E-31 267.6 24.7 251 662-994 45-296 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 3E-26 1E-30 268.0 24.8 252 662-995 56-308 (452)
56 3zyi_A Leucine-rich repeat-con 99.9 4.4E-26 1.5E-30 266.6 24.9 250 637-968 55-305 (452)
57 4fcg_A Uncharacterized protein 99.9 2.1E-26 7.1E-31 256.1 20.8 189 634-851 79-276 (328)
58 3zyj_A Leucine-rich repeat-con 99.9 6.4E-26 2.2E-30 264.3 25.0 249 637-967 44-293 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-26 7.5E-31 251.6 19.2 89 906-994 154-242 (285)
60 3ogk_B Coronatine-insensitive 99.9 5.3E-27 1.8E-31 285.8 14.8 392 204-651 110-528 (592)
61 1ozn_A Reticulon 4 receptor; N 99.9 3E-26 1E-30 250.6 19.2 253 663-996 14-267 (285)
62 3ogk_B Coronatine-insensitive 99.9 1.9E-28 6.5E-33 298.6 0.2 377 560-992 110-528 (592)
63 1wwl_A Monocyte differentiatio 99.9 1.6E-27 5.6E-32 263.8 5.4 247 658-991 41-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 9.2E-25 3.2E-29 260.9 27.9 67 906-977 242-308 (622)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-27 8.1E-32 263.1 5.1 246 683-995 33-281 (317)
66 1wwl_A Monocyte differentiatio 99.9 4.3E-27 1.5E-31 260.4 6.8 249 608-967 40-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 2.5E-26 8.4E-31 269.7 10.2 234 684-984 34-269 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-27 2.1E-31 259.7 4.4 269 612-972 11-282 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-24 8.4E-29 257.2 26.7 268 588-1001 41-308 (622)
70 3oja_A Leucine-rich immune mol 99.9 5.8E-26 2E-30 266.6 10.1 235 660-961 34-270 (487)
71 2p1m_B Transport inhibitor res 99.9 9E-27 3.1E-31 284.0 1.5 197 60-265 33-245 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 3.3E-24 1.1E-28 233.0 18.8 209 709-995 29-242 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 223.6 21.1 218 676-970 22-241 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1.7E-22 5.8E-27 218.4 22.7 207 733-995 17-223 (270)
75 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 216.4 23.9 201 710-967 18-219 (270)
76 2p1m_B Transport inhibitor res 99.9 3.2E-25 1.1E-29 270.3 -0.3 215 201-448 61-301 (594)
77 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.6E-27 220.2 17.1 223 687-999 22-244 (272)
78 1p9a_G Platelet glycoprotein I 99.9 4.7E-22 1.6E-26 216.5 22.1 180 756-993 32-211 (290)
79 1p9a_G Platelet glycoprotein I 99.9 2.6E-22 9E-27 218.6 19.8 183 780-1019 31-213 (290)
80 3rfs_A Internalin B, repeat mo 99.9 5.6E-23 1.9E-27 222.4 14.0 227 662-978 21-247 (272)
81 3m19_A Variable lymphocyte rec 99.9 2.3E-21 7.7E-26 207.1 19.2 181 758-995 17-197 (251)
82 3goz_A Leucine-rich repeat-con 99.9 6.6E-23 2.3E-27 231.9 2.6 68 906-973 226-304 (362)
83 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.4E-26 205.7 14.0 77 906-987 156-236 (239)
84 3goz_A Leucine-rich repeat-con 99.9 8.7E-23 3E-27 231.0 2.7 263 664-994 2-301 (362)
85 4glp_A Monocyte differentiatio 99.9 1.2E-21 4E-26 216.6 11.5 80 906-990 225-307 (310)
86 2ca6_A RAN GTPase-activating p 99.8 3.4E-23 1.2E-27 237.0 -1.2 247 675-994 23-320 (386)
87 4glp_A Monocyte differentiatio 99.8 3.7E-21 1.3E-25 212.5 14.5 205 659-967 90-308 (310)
88 3m19_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 198.0 20.1 181 780-1016 14-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.3E-25 199.8 15.9 203 577-838 25-236 (239)
90 2ast_B S-phase kinase-associat 99.8 5.9E-22 2E-26 222.4 4.9 61 682-742 91-152 (336)
91 2ca6_A RAN GTPase-activating p 99.8 4.2E-22 1.4E-26 227.9 1.3 248 577-845 23-320 (386)
92 2ast_B S-phase kinase-associat 99.8 1.3E-21 4.6E-26 219.5 5.0 248 662-996 49-312 (336)
93 1h6u_A Internalin H; cell adhe 99.8 6.1E-20 2.1E-24 202.1 16.7 126 682-841 39-164 (308)
94 1h6u_A Internalin H; cell adhe 99.8 8.1E-20 2.8E-24 201.1 17.4 195 705-992 38-232 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.1E-24 201.6 20.1 244 565-839 12-257 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.7E-19 9.3E-24 201.1 18.2 206 614-848 12-222 (350)
97 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 210.5 16.9 115 709-842 60-174 (571)
98 2o6s_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 182.4 15.9 176 759-998 11-186 (208)
99 3cvr_A Invasion plasmid antige 99.8 6.3E-19 2.2E-23 207.7 18.2 138 685-846 60-197 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-19 1.1E-23 185.6 13.5 157 783-995 14-171 (220)
101 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 180.6 16.2 60 685-744 29-88 (208)
102 2v9t_B SLIT homolog 2 protein 99.8 2.4E-18 8.2E-23 178.9 16.2 156 783-994 14-169 (220)
103 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 177.5 16.1 157 782-995 21-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.5E-23 195.5 12.7 181 757-994 20-206 (361)
105 2v9t_B SLIT homolog 2 protein 99.8 3.3E-18 1.1E-22 177.8 13.6 157 807-1019 14-170 (220)
106 2xot_A Amphoterin-induced prot 99.8 3.4E-18 1.2E-22 192.9 14.6 177 735-967 21-203 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 9.6E-18 3.3E-22 174.3 15.9 137 781-970 33-170 (220)
108 3e6j_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 171.3 16.4 157 805-1018 20-176 (229)
109 1dce_A Protein (RAB geranylger 99.7 5.1E-20 1.7E-24 218.7 -6.4 76 906-983 487-566 (567)
110 1h6t_A Internalin B; cell adhe 99.7 5.8E-17 2E-21 176.5 17.7 152 775-991 63-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.2E-22 198.5 13.2 167 638-842 23-189 (605)
112 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.1E-22 167.4 11.4 89 906-994 55-143 (192)
113 1w8a_A SLIT protein; signaling 99.7 5.3E-17 1.8E-21 164.8 13.1 176 783-1018 11-187 (192)
114 1h6t_A Internalin B; cell adhe 99.7 1.3E-16 4.5E-21 173.6 16.9 172 98-320 43-214 (291)
115 1m9s_A Internalin B; cell inva 99.7 8.9E-17 3.1E-21 191.8 16.4 148 685-844 22-169 (605)
116 1dce_A Protein (RAB geranylger 99.7 2.6E-19 8.9E-24 212.6 -8.8 165 721-960 398-567 (567)
117 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.6E-21 163.6 11.8 155 776-991 40-195 (197)
118 1xeu_A Internalin C; cellular 99.7 1.5E-16 5.3E-21 170.2 12.4 169 755-992 19-187 (263)
119 4b8c_D Glucose-repressible alc 99.7 3E-17 1E-21 201.4 4.7 159 770-991 238-405 (727)
120 4ezg_A Putative uncharacterize 99.6 4.4E-16 1.5E-20 159.0 12.4 134 776-967 62-195 (197)
121 4b8c_D Glucose-repressible alc 99.6 3.9E-17 1.3E-21 200.4 4.4 226 660-968 173-406 (727)
122 3sb4_A Hypothetical leucine ri 99.6 1E-16 3.5E-21 178.4 7.2 217 610-834 100-327 (329)
123 1xeu_A Internalin C; cellular 99.6 4.5E-16 1.5E-20 166.5 10.2 170 661-845 20-189 (263)
124 3sb4_A Hypothetical leucine ri 99.6 6.7E-16 2.3E-20 171.8 10.0 76 906-983 251-327 (329)
125 4fdw_A Leucine rich hypothetic 99.6 2.2E-14 7.4E-19 162.6 21.4 264 538-840 113-382 (401)
126 2wfh_A SLIT homolog 2 protein 99.6 5E-15 1.7E-19 150.1 14.2 89 906-994 55-143 (193)
127 2ell_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 148.9 9.7 85 906-990 72-160 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 4.5E-15 1.5E-19 147.3 11.2 138 779-972 23-165 (168)
129 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 3.9E-19 145.7 14.2 90 906-995 53-142 (177)
130 2je0_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 144.7 9.4 80 906-985 65-148 (149)
131 4fdw_A Leucine rich hypothetic 99.6 5.9E-14 2E-18 159.1 20.9 82 586-673 112-193 (401)
132 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 6E-19 146.0 14.8 129 783-968 13-141 (193)
133 2je0_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 144.1 8.3 129 779-962 16-149 (149)
134 2o6r_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 142.4 14.8 133 782-970 9-141 (177)
135 4fs7_A Uncharacterized protein 99.5 1.1E-13 3.8E-18 158.0 20.7 245 578-837 62-306 (394)
136 4fs7_A Uncharacterized protein 99.5 3.4E-13 1.2E-17 153.9 20.4 330 531-958 64-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 7.1E-16 2.4E-20 157.6 -5.7 155 776-990 14-185 (198)
138 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 134.8 11.1 90 906-995 31-120 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.4 1E-13 3.4E-18 138.5 7.8 84 906-991 65-154 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.7E-13 9.1E-18 135.4 9.7 135 775-967 14-154 (176)
141 2r9u_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 132.0 11.2 90 906-995 34-123 (174)
142 3g39_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 130.6 11.2 109 907-1018 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.3E-17 128.5 11.2 108 908-1018 15-122 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.5E-14 5E-19 147.8 -5.1 153 659-842 17-186 (198)
145 4gt6_A Cell surface protein; l 99.3 5.5E-11 1.9E-15 135.6 22.4 78 907-989 313-390 (394)
146 4gt6_A Cell surface protein; l 99.3 8.2E-11 2.8E-15 134.2 21.0 151 534-692 59-213 (394)
147 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.8E-16 138.2 9.6 110 906-1018 32-145 (347)
148 2ifg_A High affinity nerve gro 99.2 3.1E-11 1E-15 135.4 10.6 108 908-1018 11-120 (347)
149 3un9_A NLR family member X1; l 99.2 4.6E-12 1.6E-16 142.0 3.3 66 101-166 72-139 (372)
150 3un9_A NLR family member X1; l 99.2 9.8E-12 3.3E-16 139.4 4.7 165 75-243 73-252 (372)
151 4h09_A Hypothetical leucine ri 99.0 1.7E-08 5.7E-13 114.4 24.2 70 906-977 287-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.6E-08 8.8E-13 112.9 22.6 313 510-852 43-356 (379)
153 2ra8_A Uncharacterized protein 98.5 2.9E-08 1E-12 109.9 3.9 83 754-839 251-341 (362)
154 3rw6_A Nuclear RNA export fact 98.5 4.7E-09 1.6E-13 109.9 -3.2 83 150-236 167-257 (267)
155 1io0_A Tropomodulin; LRR prote 98.5 1.2E-07 4.3E-12 94.5 7.3 119 124-242 31-163 (185)
156 2ra8_A Uncharacterized protein 98.5 3.7E-07 1.3E-11 101.1 10.2 142 173-345 167-319 (362)
157 1io0_A Tropomodulin; LRR prote 98.3 4.7E-07 1.6E-11 90.3 5.8 48 144-192 27-79 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.3E-06 4.4E-11 91.4 5.8 65 928-994 169-237 (267)
159 3e4g_A ATP synthase subunit S, 97.9 8E-06 2.7E-10 78.8 5.0 59 102-164 62-125 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.4E-05 4.7E-10 77.1 4.9 84 153-266 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00018 6.3E-09 70.7 7.6 90 126-215 38-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00082 2.8E-08 66.1 7.0 74 145-219 33-111 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.8E-08 59.7 6.7 37 955-991 33-69 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.3E-08 58.3 7.0 57 908-966 11-68 (130)
165 2lz0_A Uncharacterized protein 47.0 27 0.00092 29.6 5.2 42 601-644 10-51 (100)
166 3ox7_P MH027; urokinase-type p 39.0 9.9 0.00034 21.0 0.7 10 59-68 5-14 (23)
167 2lz0_A Uncharacterized protein 37.3 61 0.0021 27.3 6.0 43 650-693 10-52 (100)
168 2l9u_A Receptor tyrosine-prote 24.8 52 0.0018 21.0 2.3 22 1049-1070 10-31 (40)
169 2k1k_A Ephrin type-A receptor 24.3 82 0.0028 21.1 3.4 7 1051-1057 16-22 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-88 Score=844.98 Aligned_cols=730 Identities=30% Similarity=0.436 Sum_probs=491.8
Q ss_pred cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCcCcCceEecCCCCcEEEEEcCCCCCCcccccccccCCCCCCC
Q 001313 24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQL 103 (1102)
Q Consensus 24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~L 103 (1102)
++.+.++||+|||+||+++.||. .+++|+. + +|||+|+||+|+ +|||++|||++....|....-++.|.++++|
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~--~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSS-N--KNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-T--SCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCC-C--CCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 45558899999999999999998 9999974 3 799999999998 7999999999987766532223556778888
Q ss_pred CEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhH--hhhcCCCcCEEEcCCCcccCCCChhhhccCCCCc
Q 001313 104 ESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILS--SLARLSSLTSLDLSANRLKGSIDIKELDSLRDLE 181 (1102)
Q Consensus 104 ~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 181 (1102)
+.++++.+.+...+ ..++++++||+|+|++|.+.+.+|. .++++++|++||+++|.+.+.++...+.++++|+
T Consensus 80 ~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 80 ESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cccCCcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 88888877654322 2467788888888888888777777 7888888888888888777655443335666666
Q ss_pred EEEcCCCcCCcccccCCccc---cCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313 182 KLNIGRNMIDKFVVSKGPKR---LSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLE 258 (1102)
Q Consensus 182 ~L~Ls~n~~~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 258 (1102)
+|++++|.+++..+ .. +.++++|++|++++|.+++..+. ..+++|++|++++|.+.+.++. ++++++|+
T Consensus 155 ~L~Ls~n~l~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~ 226 (768)
T 3rgz_A 155 VLDLSANSISGANV----VGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQ 226 (768)
T ss_dssp EEECCSSCCEEETH----HHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CTTCCSCC
T ss_pred EEECCCCccCCcCC----hhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc--cccCCCCC
Confidence 66666666655433 22 45566666666666655543332 5555566666665555544442 55555555
Q ss_pred EEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccccccccccee
Q 001313 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338 (1102)
Q Consensus 259 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 338 (1102)
+|++++|.+++. .+..++.
T Consensus 227 ~L~Ls~n~l~~~---------------------------~~~~l~~---------------------------------- 245 (768)
T 3rgz_A 227 HLDISGNKLSGD---------------------------FSRAIST---------------------------------- 245 (768)
T ss_dssp EEECCSSCCCSC---------------------------HHHHTTT----------------------------------
T ss_pred EEECcCCcCCCc---------------------------ccHHHhc----------------------------------
Confidence 555555554421 1222333
Q ss_pred ecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCC-CCCcEEE
Q 001313 339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM-TSLRILD 417 (1102)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 417 (1102)
+++|++|++++|.+.+..|. . .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus 246 --------------------l~~L~~L~Ls~n~l~~~~~~---~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 246 --------------------CTELKLLNISSNQFVGPIPP---L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp --------------------CSSCCEEECCSSCCEESCCC---C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred --------------------CCCCCEEECCCCcccCccCc---c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 34444444444444433332 1 34455555555555554444444443 5555555
Q ss_pred cCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeecc
Q 001313 418 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 497 (1102)
Q Consensus 418 Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~ 497 (1102)
+++|.+.+.+ +..+.++++|++|++++|.+.+.++...
T Consensus 301 Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~----------------------------------------- 338 (768)
T 3rgz_A 301 LSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDT----------------------------------------- 338 (768)
T ss_dssp CCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHH-----------------------------------------
T ss_pred CcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHH-----------------------------------------
Confidence 5555554433 3444444444444444444433322221
Q ss_pred CCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCC-CcCEEEccCCcCCC
Q 001313 498 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK-QLRLLDVSKNNFQG 576 (1102)
Q Consensus 498 ~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~ls~n~l~~ 576 (1102)
+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++
T Consensus 339 ------------------------------------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 339 ------------------------------------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp ------------------------------------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred ------------------------------------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 22223333333333333322222233333 56777777777777
Q ss_pred CCCchhhhc-CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCccccc
Q 001313 577 HIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSR 655 (1102)
Q Consensus 577 ~ip~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~ 655 (1102)
.+|..++.. +++|++|++++|++++.+|..|.++++|++|++++|++++.+|..+ ..+++|++|++++|.+++.+|..
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHH
Confidence 666665432 4667777777777777777777777777777777777776666655 46777777777777777777777
Q ss_pred ccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCccc
Q 001313 656 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 735 (1102)
Q Consensus 656 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 735 (1102)
+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred EEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE---------EEccCccCcccCCccccCCCCC
Q 001313 736 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI---------LDLSYNHLNGNIPDRVDGLSQL 806 (1102)
Q Consensus 736 ~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~---------L~Ls~n~l~~~~p~~~~~l~~L 806 (1102)
.|++++|+++|.+|..+ ..+..+.. ..+.++... .....
T Consensus 542 ~L~Ls~N~l~g~ip~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 589 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAM------------------------FKQSGKIAANFIAGKRYVYIKNDGMK--------KECHG 589 (768)
T ss_dssp EEECCSSEEESBCCGGG------------------------GTTTTCBCCSTTCSCEEEEEECCSCC--------TTCCS
T ss_pred EEECCCCccCCcCChHH------------------------hcccchhhhhcccccccccccccccc--------ccccc
Confidence 77777777666555432 22222222 222222111 00011
Q ss_pred CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccc
Q 001313 807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE 886 (1102)
Q Consensus 807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1102)
.... -.+.+..+..+..++.++.++++.|.++|.+|..+++++
T Consensus 590 ~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~---------------------------------- 632 (768)
T 3rgz_A 590 AGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG---------------------------------- 632 (768)
T ss_dssp SEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB----------------------------------
T ss_pred cccc---cccccccchhhhccccccccccccceecccCchhhhccc----------------------------------
Confidence 1111 134567777888888888899999999999988876654
Q ss_pred eeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 887 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
.|+.|||++|+++|.+|.+|+++++|+.|||++|+++|.+|..|+++++|++||||+|+++
T Consensus 633 -------------------~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 633 -------------------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp -------------------CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred -------------------cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCCCCCCCCC
Q 001313 967 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTT 1027 (1102)
Q Consensus 967 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~~~c~~~~ 1027 (1102)
|.+|..+.++++|++||+++|+++|.||. .++|.+|...+|.|||++||.|+. .|.+..
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999 789999999999999999999987 665443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-68 Score=666.68 Aligned_cols=656 Identities=28% Similarity=0.399 Sum_probs=396.8
Q ss_pred CCcEEeCCCCcCCcc---hhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313 130 NLKMLNLVGNLFNNS---ILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206 (1102)
Q Consensus 130 ~L~~L~Ls~n~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 206 (1102)
+++.|+|+++.+.+. +|+++.++++|+.++++.+.+... +..+++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l------------------------------~~~~~~l~ 100 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS------------------------------VSGFKCSA 100 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC------------------------------CCCCCCCT
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC------------------------------chhhccCC
Confidence 566677777777766 777788888888887777755321 13566677
Q ss_pred CcCEEEcCCCcCChhhhH--hhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccCccCCcchhhhhccccccce
Q 001313 207 NLKVFDLSGNLFNNSILS--SLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYNEIDNFEVPQACSGLRKLSY 284 (1102)
Q Consensus 207 ~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 284 (1102)
+|++|+|++|.+++.+|. .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------- 170 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG---------- 170 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH----------
T ss_pred CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh----------
Confidence 777777777777766666 77777777777777777776666544467777777777777765322110
Q ss_pred eccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchhhhchhhHHHhhccCCCCcE
Q 001313 285 LHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQY 364 (1102)
Q Consensus 285 L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 364 (1102)
...+..+++|++|++++|.+...... . .+++|++
T Consensus 171 --------------~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------------~-~l~~L~~ 204 (768)
T 3rgz_A 171 --------------WVLSDGCGELKHLAISGNKISGDVDV-------------------------------S-RCVNLEF 204 (768)
T ss_dssp --------------HHHTTCCTTCCEEECCSSEEESCCBC-------------------------------T-TCTTCCE
T ss_pred --------------hhhhccCCCCCEEECCCCcccccCCc-------------------------------c-cCCcCCE
Confidence 01134444555555555443211000 0 1445555
Q ss_pred EecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecC
Q 001313 365 LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 444 (1102)
Q Consensus 365 L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~ 444 (1102)
|++++|.+.+..|. ++.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.++.. .+
T Consensus 205 L~Ls~n~l~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l--------- 268 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF----LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL--------- 268 (768)
T ss_dssp EECCSSCCCSCCCB----CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC---------
T ss_pred EECcCCcCCCCCcc----cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc---------
Confidence 55555554443332 344445555555555554444444444444444444444443322110 22
Q ss_pred CcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecccc
Q 001313 445 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIK 524 (1102)
Q Consensus 445 ~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~ 524 (1102)
T Consensus 269 -------------------------------------------------------------------------------- 268 (768)
T 3rgz_A 269 -------------------------------------------------------------------------------- 268 (768)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCC
Q 001313 525 MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP 604 (1102)
Q Consensus 525 ~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~ 604 (1102)
++|++|++++|.++|.+|..++..+++|++|++++|++++.+|
T Consensus 269 -------------------------------------~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 269 -------------------------------------KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp -------------------------------------TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred -------------------------------------CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 2233333333333334444443323444555555555444445
Q ss_pred cccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCC-ccCeeeccCccCcccCCCCcCC-
Q 001313 605 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT-NLIWLQLEGNHFVGEIPQSLSK- 682 (1102)
Q Consensus 605 ~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~- 682 (1102)
..|+++++|++|++++|+++|.+|...+..+++|++|++++|++++..|..+.+++ +|++|++++|.+++.+|..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 55555555555555555554445544334455555555555555544444444444 5555555555555555544444
Q ss_pred -CCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccEE
Q 001313 683 -CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQV 760 (1102)
Q Consensus 683 -l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~L 760 (1102)
+++|++|++++|++++.+|..++++++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+ .+++|++|
T Consensus 392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 4555555555555555555555555555555555555555555555555555555555555555555443 34555555
Q ss_pred EccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840 (1102)
Q Consensus 761 ~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 840 (1102)
++++|++.+.+|. .+.++++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..+..+++|+.||+++|++
T Consensus 472 ~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 472 ILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp ECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 5555666666666 777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCcccc-ccceeeeeccceeeeccCCcCCCCceEECCCCCCCC
Q 001313 841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ-ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 919 (1102)
Q Consensus 841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 919 (1102)
+|.+|.++............... .+............. ......+. +..... -.....+..++++.|.+.|
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGK-----RYVYIKNDGMKKECHGAGNLLEFQ--GIRSEQ-LNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSC-----EEEEEECCSCCTTCCSSEEEEECT--TCCGGG-GGGGGGTCCSCTTSCEEEE
T ss_pred CCcCChHHhcccchhhhhccccc-----cccccccccccccccccccccccc--cccchh-hhccccccccccccceecc
Confidence 88888776554321111000000 000000000000000 00000000 000000 0011235668899999999
Q ss_pred CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313 920 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 999 (1102)
Q Consensus 920 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 999 (1102)
.+|..++.+++|++||||+|+++|.+|..|+++++|+.|||++|+++|.+|..++++++|++||+++|+++|.+|..+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cCCCCccccCCCCC
Q 001313 1000 FATFNESSYEGNPF 1013 (1102)
Q Consensus 1000 ~~~~~~~~~~gN~~ 1013 (1102)
+..+..+++.+|+.
T Consensus 703 l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 703 LTMLTEIDLSNNNL 716 (768)
T ss_dssp CCCCSEEECCSSEE
T ss_pred CCCCCEEECcCCcc
Confidence 99999999999974
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.2e-56 Score=550.22 Aligned_cols=394 Identities=23% Similarity=0.207 Sum_probs=253.5
Q ss_pred CCCcEEEccCCCCcCCCcCCCCCCC--CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313 538 TKLRQLSLVNDSLVGPFRLPIHSHK--QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 615 (1102)
Q Consensus 538 ~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 615 (1102)
++|++|++++|.+.+..+..+..++ +|++|++++|.+++..|..+.. +++|++|++++|++.+..|..|.++++|++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccE
Confidence 3444444444444444444444333 3667777777766444444433 677777777777777777777777777777
Q ss_pred EEccCcccccccc--------hhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCccc--CCCCcCCC--
Q 001313 616 LDLSNNQLTGEIP--------EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE--IPQSLSKC-- 683 (1102)
Q Consensus 616 L~Ls~n~l~~~ip--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l-- 683 (1102)
|++++|...+.++ ...+..+++|++|++++|.+++..+..+.++++|++|++++|.+... .+..|..+
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 7777765443221 12233444555555555555554444444555555555555443211 11122211
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc-ccccCCCcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313 684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL 762 (1102)
Q Consensus 684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l 762 (1102)
++|+.|++++|++++..|..+..+++|+.|++++|.+++.+| ..|..++ +|++|++
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-----------------------~L~~L~L 437 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-----------------------NIFEIYL 437 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-----------------------TCCEEEC
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-----------------------cccEEec
Confidence 244444444444444444444444444444444444443332 3344444 4445555
Q ss_pred cCcccccccCcccccCccCccEEEccCccCc--ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313 763 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840 (1102)
Q Consensus 763 ~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 840 (1102)
++|++.+..+ ..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..|..+++|++|++++|++
T Consensus 438 s~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCT-TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcceeCh-hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 5555443333 37888889999999999887 57888899999999999999999988888899999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313 841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 920 (1102)
Q Consensus 841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 920 (1102)
++..+..+...... . -.-.+.|+.|+|++|+++..
T Consensus 517 ~~~~~~~~~~~~~~-------~--------------------------------------~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 517 ARLWKHANPGGPIY-------F--------------------------------------LKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp GGGGSTTSTTSCCC-------T--------------------------------------TTTCTTCCEEECCSSCCCCC
T ss_pred cccchhhccCCcch-------h--------------------------------------hcCCCCCCEEECCCCCCCCC
Confidence 86543322110000 0 00123689999999999955
Q ss_pred CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhh-cCCCCCEEEcccCcCcccCCccccc
Q 001313 921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV-ELNTLAVFSVAYNNLSGKIPERAAQ 999 (1102)
Q Consensus 921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~l~ls~N~l~~~~p~~~~~ 999 (1102)
.+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|+|++..|..+. .+++|+.+++++|++.|.++. ..+
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~-~~~ 630 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES-IAW 630 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC-CSS
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc-HHH
Confidence 555799999999999999999988888899999999999999999998888887 789999999999999998874 244
Q ss_pred cCC
Q 001313 1000 FAT 1002 (1102)
Q Consensus 1000 ~~~ 1002 (1102)
|..
T Consensus 631 ~~~ 633 (680)
T 1ziw_A 631 FVN 633 (680)
T ss_dssp EEC
T ss_pred HHH
Confidence 433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.5e-56 Score=551.47 Aligned_cols=574 Identities=20% Similarity=0.225 Sum_probs=484.3
Q ss_pred CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 438 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 438 (1102)
.+++++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+. .+++..+.++++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence 35788888888888776655 6777888999999988888888888888899999999988877 4546678888899
Q ss_pred CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313 439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518 (1102)
Q Consensus 439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L 518 (1102)
++|++++|.++ .++...+.++++|++|++++|.+... .|..+..+++|+.|
T Consensus 100 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 100 TELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSST----------------------------KLGTQVQLENLQEL 150 (680)
T ss_dssp SEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCC----------------------------CCCSSSCCTTCCEE
T ss_pred CEEECCCCccC-ccChhHccccCCCCEEECCCCccccc----------------------------CchhhcccccCCEE
Confidence 99999988886 44445678888899998888876532 34455678899999
Q ss_pred EeccccCCCCCChhhh-hcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhh--cCCCCcEEEcc
Q 001313 519 RLSHIKMNEEFPNWLL-ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD--ILSRLTVFNIS 595 (1102)
Q Consensus 519 ~ls~~~~~~~~p~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~Ls 595 (1102)
++++|.+.+..+..+. ..+++|++|++++|.+.+..+..+..+++|+.++++++.+.+.....+.. ..++|+.|+++
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 9999998887766542 35689999999999999888888889999999999998876432222211 14789999999
Q ss_pred CCcccccCCcccCCCCC--CcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCc
Q 001313 596 MNALDGSIPSSFGNMNF--LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 673 (1102)
Q Consensus 596 ~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 673 (1102)
+|.+++..|..|.+++. |++|++++|++++ ++...+..+++|++|++++|++++..+..+.++++|++|++++|...
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred CCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 99999999999988865 9999999999985 44444568999999999999999999999999999999999987655
Q ss_pred c-----cCC----CCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC--CcccccCC--CcccEEEcc
Q 001313 674 G-----EIP----QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQL--RILQILDIS 740 (1102)
Q Consensus 674 ~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l--~~L~~L~ls 740 (1102)
+ .+| ..|..+++|++|++++|.+++..|..|.++++|++|++++|.+... .+..|..+ ++|+.|+++
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 3 233 3788999999999999999998899999999999999999986432 22334433 589999999
Q ss_pred CcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc--
Q 001313 741 DNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE-- 817 (1102)
Q Consensus 741 ~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-- 817 (1102)
+|++++..|..+ .+++|+.|++++|.+.+.+|...|.++++|++|++++|++++..+..|..+++|+.|++++|.++
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 999999888766 57899999999999999888779999999999999999999999999999999999999999987
Q ss_pred ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313 818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897 (1102)
Q Consensus 818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1102)
+.+|..+..+++|+.|++++|++++..|..|.+++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~--------------------------------------------- 504 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE--------------------------------------------- 504 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------------------------------------------
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhcccc---------------------------------------------
Confidence 57899999999999999999999988887776654
Q ss_pred eccCCcCCCCceEECCCCCCCCCC--------cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccC
Q 001313 898 TYQGRVPSLLSGLDLSCNRLIGHI--------PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 969 (1102)
Q Consensus 898 ~~~~~~~~~L~~L~Ls~N~l~~~i--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 969 (1102)
.|+.|+|++|++++.. +..|.++++|++|+|++|+++...+..|.++++|+.|||++|++++..
T Consensus 505 --------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 505 --------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp --------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 6899999999998642 234889999999999999999766678999999999999999999877
Q ss_pred chhhhcCCCCCEEEcccCcCcccCCcccc-ccCCCCccccCCCCCCCCCCC
Q 001313 970 PYQLVELNTLAVFSVAYNNLSGKIPERAA-QFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 970 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~-~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
+..|.++++|+.|++++|++++..|..+. .+..+..+++.+||+.|+|+.
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 77889999999999999999998877555 678888999999999999874
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-52 Score=525.99 Aligned_cols=546 Identities=23% Similarity=0.185 Sum_probs=369.3
Q ss_pred CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCc-chhccCCCCCcEEEcCCCccccccCCcccccCCc
Q 001313 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 437 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~ 437 (1102)
.+++++|++++|.+++..+. .+..+++|++|+|++|...+.+ |..|.++++|++|++++|.+.+.. +..+.++++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSS---SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSS
T ss_pred CCCcCEEECCCCcCCccChh---HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcc
Confidence 56777777777777665554 6667777777777777555544 566777777777777777766443 666777777
Q ss_pred cCeeecCCcccccccC-ccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCccc
Q 001313 438 IEDLILSDNHFQIPIS-LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 516 (1102)
Q Consensus 438 L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~ 516 (1102)
|++|++++|.+++..+ ...+.++++|++|++++|.+.... .+..+..+++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~---------------------------~~~~~~~L~~L~ 151 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY---------------------------LHPSFGKLNSLK 151 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC---------------------------CCGGGGTCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc---------------------------cchhHhhCCCCC
Confidence 7777777777665332 223556666666666666543211 123345555666
Q ss_pred EEEeccccCCCCCChhhhhcC--CCCcEEEccCCCCcCCCcCCCCCCCC------cCEEEccCCcCCCCCCchhhhcC--
Q 001313 517 YVRLSHIKMNEEFPNWLLENN--TKLRQLSLVNDSLVGPFRLPIHSHKQ------LRLLDVSKNNFQGHIPLEIGDIL-- 586 (1102)
Q Consensus 517 ~L~ls~~~~~~~~p~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~ls~n~l~~~ip~~~~~~l-- 586 (1102)
.|++++|.+.+..+..+. .+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++.++..+...+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 666666666555554432 22 45555555555555544444333333 55555555555544444443221
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcC--CCCcEEEccccccCCcccccccCCCccCe
Q 001313 587 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIW 664 (1102)
Q Consensus 587 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 664 (1102)
+.++.+.++.+.... ++..+++. .+....+.++ ++|+.|++++|.+.+..+..+..+++|++
T Consensus 231 ~~l~~L~l~~~~~~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 231 SQAFSLILAHHIMGA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp CCBSEEECCSSCCBC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred ccccceecccccccc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 234444444222110 01122232 1222222333 67888888888888888888888888888
Q ss_pred eeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744 (1102)
Q Consensus 665 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 744 (1102)
|++++|.+++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 88888888888888888888888888888888877788888888888888888888877777888888888888888888
Q ss_pred ccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCch-
Q 001313 745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPI- 822 (1102)
Q Consensus 745 ~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~- 822 (1102)
++.. . +++|+.+++++|++. .+|. . ..+++.|++++|++++... ..+..+++|++|+|++|++++..+.
T Consensus 375 ~~i~-~---~~~L~~L~l~~N~l~-~l~~-~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 375 TTIH-F---IPSIPDIFLSGNKLV-TLPK-I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp CCCS-S---CCSCSEEEEESCCCC-CCCC-C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred Cccc-C---CCCcchhccCCCCcc-cccc-c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 7432 2 667888888888887 4555 2 4578889999998886432 2355788999999999998865443
Q ss_pred hhcCCCCCCEEECcCccCCCCCC-----cccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313 823 QLCRLNQLQLLDLSNNNLHGHIP-----SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897 (1102)
Q Consensus 823 ~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1102)
.+..+++|+.|++++|.+++..+ ..|.++
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l---------------------------------------------- 479 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGL---------------------------------------------- 479 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB----------------------------------------------
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCc----------------------------------------------
Confidence 45668889999999998874433 222222
Q ss_pred eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313 898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977 (1102)
Q Consensus 898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 977 (1102)
+.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..+.
T Consensus 480 -------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--- 547 (844)
T 3j0a_A 480 -------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--- 547 (844)
T ss_dssp -------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---
T ss_pred -------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---
Confidence 2688899999999988888899999999999999999988887776 7899999999999998887754
Q ss_pred CCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCCCCCC
Q 001313 978 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS 1024 (1102)
Q Consensus 978 ~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~~~c~ 1024 (1102)
+|+.+++++|++.|.++. .+ |..+....|..+||.+....|.
T Consensus 548 ~L~~l~l~~Np~~C~c~~--~~---f~~~~~~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 548 SLSVLDITHNKFICECEL--ST---FINWLNHTNVTIAGPPADIYCV 589 (844)
T ss_dssp SCCEEEEEEECCCCSSSC--CS---HHHHHHHTTTTTCCCGGGCCCS
T ss_pred CcCEEEecCCCccccccc--HH---HHHHHHhcCcccccccccCccC
Confidence 678899999999887763 22 2222334455566665555554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-50 Score=495.31 Aligned_cols=494 Identities=22% Similarity=0.240 Sum_probs=233.8
Q ss_pred CCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCe
Q 001313 361 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 440 (1102)
Q Consensus 361 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~ 440 (1102)
.+++|++++|.+++..+. .+..+++|++|++++|.+.+..|..|.++++|++|++++|++.+.. +..+.++++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCE
T ss_pred cCcEEEccCCccCcCChh---HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC-hhhhcccccccE
Confidence 455666666655544443 4555566666666666655555555666666666666666555322 444555555555
Q ss_pred eecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEe
Q 001313 441 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 520 (1102)
Q Consensus 441 L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~l 520 (1102)
|++++|.+++. +...+ .
T Consensus 110 L~L~~n~i~~l-~~~~~----------------------------------------------------~---------- 126 (606)
T 3t6q_A 110 LFFIQTGISSI-DFIPL----------------------------------------------------H---------- 126 (606)
T ss_dssp EECTTSCCSCG-GGSCC----------------------------------------------------T----------
T ss_pred eeccccCcccC-Ccchh----------------------------------------------------c----------
Confidence 55555554421 01111 2
Q ss_pred ccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCc--EEEccCCc
Q 001313 521 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT--VFNISMNA 598 (1102)
Q Consensus 521 s~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~--~L~Ls~n~ 598 (1102)
++++|++|++++|.+.+.....+..+++|++|++++|.+++..|..+.. +++|+ .|++++|.
T Consensus 127 ---------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 127 ---------------NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNLNGND 190 (606)
T ss_dssp ---------------TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT-TTTCCSEEEECTTCC
T ss_pred ---------------cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh-hcccceeEEecCCCc
Confidence 3333444444444433322222223445555555555555332333322 45555 55555555
Q ss_pred ccccCCcccCCCCCCcEEEccCcccc-------------------------cccchhHhhcCC--CCcEEEccccccCCc
Q 001313 599 LDGSIPSSFGNMNFLQFLDLSNNQLT-------------------------GEIPEHLAMGCV--SLRSLALSNNNLEGH 651 (1102)
Q Consensus 599 l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~ip~~~~~~l~--~L~~L~L~~n~l~~~ 651 (1102)
+++..|..|.. ..|+.|++++|... ..++...+.++. +|+.|++++|.+++.
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred cCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 55554444433 34555555555311 012222222222 445555555555555
Q ss_pred ccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcc-cccC
Q 001313 652 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL-EFCQ 730 (1102)
Q Consensus 652 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~ 730 (1102)
.+..+.++++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 4444555555555555555554 3444455555555555555555544444455555555555555554433332 2445
Q ss_pred CCcccEEEccCcccccCC--CC-CCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCc-cccCCCCC
Q 001313 731 LRILQILDISDNNISGSL--PS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDGLSQL 806 (1102)
Q Consensus 731 l~~L~~L~ls~n~l~~~~--p~-~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 806 (1102)
+++|++|++++|.+++.. |. ...+++|++|++++|++.+..|. .|..+++|++|++++|++++..|. .+..+++|
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 555555555555554432 22 12344455555555544443333 444445555555555554444332 24444555
Q ss_pred CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC---CcccccccccccccCCCCCCCccchhhhcCCccCCcccc
Q 001313 807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI---PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 883 (1102)
Q Consensus 807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1102)
++|++++|++++..|..+..+++|++|++++|++++.. +..+..++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~------------------------------- 476 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG------------------------------- 476 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-------------------------------
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-------------------------------
Confidence 55555555554444444444555555555555444311 11111111
Q ss_pred ccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCC
Q 001313 884 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963 (1102)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 963 (1102)
.|+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|.+++.| .|||++|
T Consensus 477 ----------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 477 ----------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ----------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ----------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 34445555555554444455555555555555555555555555555555 5555555
Q ss_pred cCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313 964 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 964 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 994 (1102)
++++.+|..+..+++|+++++++|++.|.++
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 5554444444444555555555555544443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.5e-51 Score=498.28 Aligned_cols=304 Identities=26% Similarity=0.296 Sum_probs=237.7
Q ss_pred CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667 (1102)
Q Consensus 588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 667 (1102)
+|+.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 4566666666666665666666666666666666666 566554 35666666666666666666666667777777777
Q ss_pred cCccCcccCCC-CcCCCCCCcEEEccCCcCCCCC--CccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313 668 EGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744 (1102)
Q Consensus 668 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 744 (1102)
++|.+.+.+|. .+..+++|++|++++|.+++.. |..+..+++|++|++++|.+++..|..|..+++|+.|++++|++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 77777655544 4777778888888888777554 66677777888888888877777777777777777777777776
Q ss_pred ccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc---Cc
Q 001313 745 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE---VP 821 (1102)
Q Consensus 745 ~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p 821 (1102)
.+. .+...|.++++|++|++++|.+++..|..+..+++|++|++++|++++. .+
T Consensus 413 ~~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 413 KVK-----------------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp ECC-----------------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CCc-----------------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 643 3332577788899999999999888888899999999999999999863 34
Q ss_pred hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313 822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 901 (1102)
Q Consensus 822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1102)
..+..+++|++|++++|++++..|..|.+++
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------------------------------- 500 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLK------------------------------------------------- 500 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred hhhccCCCccEEECCCCccCccChhhhcccc-------------------------------------------------
Confidence 6788999999999999999988888776654
Q ss_pred CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313 902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970 (1102)
Q Consensus 902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 970 (1102)
.|+.|||++|++++.+|+.|.+++.| +|+|++|++++.+|..|..+++|+.|++++|.+++..+
T Consensus 501 ----~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 ----MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp ----TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ----CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 68999999999999999999999999 99999999999999999999999999999999998665
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-50 Score=510.27 Aligned_cols=528 Identities=20% Similarity=0.212 Sum_probs=413.0
Q ss_pred EEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeec
Q 001313 364 YLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 443 (1102)
Q Consensus 364 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L 443 (1102)
..+.+++.++.... -.+++++|+|++|.+++..|..|.++++|++|++++|...+.+++..+.++++|++|++
T Consensus 8 ~~dcs~~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 45556666554321 24678888888888887777788888888888888887777777777788888888888
Q ss_pred CCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccc
Q 001313 444 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 523 (1102)
Q Consensus 444 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~ 523 (1102)
++|.+.+. ....+.++++|+ +|++++|
T Consensus 81 s~N~l~~~-~p~~~~~l~~L~----------------------------------------------------~L~Ls~n 107 (844)
T 3j0a_A 81 GSSKIYFL-HPDAFQGLFHLF----------------------------------------------------ELRLYFC 107 (844)
T ss_dssp TTCCCCEE-CTTSSCSCSSCC----------------------------------------------------CEECTTC
T ss_pred CCCcCccc-CHhHccCCcccC----------------------------------------------------EeeCcCC
Confidence 88777632 223344445444 4555555
Q ss_pred cCCCCCCh-hhhhcCCCCcEEEccCCCCcCCCc-CCCCCCCCcCEEEccCCcCCCCCCchhhhcC--CCCcEEEccCCcc
Q 001313 524 KMNEEFPN-WLLENNTKLRQLSLVNDSLVGPFR-LPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL--SRLTVFNISMNAL 599 (1102)
Q Consensus 524 ~~~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l 599 (1102)
.+.+.+|. ..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.. + ++|+.|+++.|.+
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBS
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCcc
Confidence 54443332 224466666777777766665443 34667777778888887777666666554 4 7788888888888
Q ss_pred cccCCcccCCCCC------CcEEEccCcccccccchhHhhcC--CCCcEEEccc---------cccCCcccccccCC--C
Q 001313 600 DGSIPSSFGNMNF------LQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSN---------NNLEGHMFSRNFNL--T 660 (1102)
Q Consensus 600 ~~~~~~~~~~l~~------L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~---------n~l~~~~~~~~~~l--~ 660 (1102)
.+..|..+..+.+ |++|++++|++++.+|..+.... .+++.+.++. +.+.......+.++ +
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 8877777766665 88888888888877776654332 5677777763 34444445555554 7
Q ss_pred ccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEcc
Q 001313 661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740 (1102)
Q Consensus 661 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 740 (1102)
+|++|++++|.+.+..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc
Q 001313 741 DNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 819 (1102)
Q Consensus 741 ~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 819 (1102)
+|++.+..+..+ .+++|+.|++++|.+++ +..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENL 416 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCC------CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSS
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCc------ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccC
Confidence 999987777655 57999999999999974 333789999999999998 45544 46799999999999975
Q ss_pred C-chhhcCCCCCCEEECcCccCCCCCCccc-ccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313 820 V-PIQLCRLNQLQLLDLSNNNLHGHIPSCF-DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897 (1102)
Q Consensus 820 ~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1102)
. +..+..+++|+.|+|++|++++..+... ..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------------------------------------- 449 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSE----------------------------------------------- 449 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS-----------------------------------------------
T ss_pred chhhhhhcCCccceeeCCCCccccccccccccc-----------------------------------------------
Confidence 3 3456789999999999999986554321 11
Q ss_pred eccCCcCCCCceEECCCCCCC-----CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh
Q 001313 898 TYQGRVPSLLSGLDLSCNRLI-----GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 972 (1102)
Q Consensus 898 ~~~~~~~~~L~~L~Ls~N~l~-----~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 972 (1102)
.+.|+.|+|++|.++ +..|..|..+++|++|+|++|++++.+|..|.++++|+.|||++|+|++..|..
T Consensus 450 ------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 450 ------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp ------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 236899999999997 556677999999999999999999999999999999999999999999887777
Q ss_pred hhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCCC
Q 001313 973 LVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 1020 (1102)
Q Consensus 973 l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~~ 1020 (1102)
+. ++|++||+++|++++.+|.. +..+..+++.+||+.|+|++.
T Consensus 524 ~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 524 LP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCC
T ss_pred hh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccH
Confidence 66 89999999999999999874 456777889999999999763
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.6e-50 Score=488.36 Aligned_cols=531 Identities=18% Similarity=0.186 Sum_probs=389.5
Q ss_pred cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeee
Q 001313 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 442 (1102)
Q Consensus 363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~ 442 (1102)
++++.+++.++.... .+ .+++++|++++|.+.+..+..|.++++|++|++++|.+++ +.+..|.++++|++|+
T Consensus 14 ~~~~c~~~~l~~ip~----~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPD----DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TEEECTTSCCSSCCT----TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CceEccCCCcccCCC----CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence 355555555543322 22 2567777777777776666677777777777777777663 3356666777777777
Q ss_pred cCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecc
Q 001313 443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 522 (1102)
Q Consensus 443 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~ 522 (1102)
+++|.+++.. |..+..+++|++|++++
T Consensus 87 Ls~n~l~~~~-----------------------------------------------------p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 87 LTGNPIQSFS-----------------------------------------------------PGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CTTCCCCCCC-----------------------------------------------------TTSSTTCTTCCEEECTT
T ss_pred CCCCcccccC-----------------------------------------------------hhhcCCcccCCEEEccC
Confidence 7776655221 22233344444455555
Q ss_pred ccCCCCCChhhhhcCCCCcEEEccCCCCcC-CCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCC----CcEEEccCC
Q 001313 523 IKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR----LTVFNISMN 597 (1102)
Q Consensus 523 ~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~----L~~L~Ls~n 597 (1102)
|.+.+..+.. ++++++|++|++++|.+.+ ..+..+..+++|++|++++|++++..|..+.. +++ +.+|++++|
T Consensus 114 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 114 TKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLN 191 (606)
T ss_dssp SCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTC
T ss_pred Cccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCC
Confidence 5444433333 4688999999999999987 45778899999999999999998665655543 444 458999999
Q ss_pred cccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc------ccccccCCC--ccCeeec-c
Q 001313 598 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH------MFSRNFNLT--NLIWLQL-E 668 (1102)
Q Consensus 598 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~--~L~~L~L-~ 668 (1102)
.+++..+..+... +|++|++++|.+++......+..++.|+.+++..+.+... ....+.++. .++.+++ .
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 9998777777665 8999999999998655555567899999988876554321 112222222 4556666 6
Q ss_pred CccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCC
Q 001313 669 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 748 (1102)
Q Consensus 669 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 748 (1102)
.|.+.+..|. +..+++|+.|++++|.+. .+| ++..+++|+.|++++|.+ +.+| .+ .+++|+.|++++|+..+.+
T Consensus 271 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 271 TNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred cccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence 6677777776 788888888888888886 456 778888888888888888 5667 45 8888888888888665544
Q ss_pred CCCCCCccccEEEccCcccccc--cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhc
Q 001313 749 PSCYDFVCIEQVHLSKNMLHGQ--LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLC 825 (1102)
Q Consensus 749 p~~~~~~~L~~L~l~~n~l~~~--i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~ 825 (1102)
....+++|+.|++++|++++. +|. .+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+.
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 344678888888888888764 255 77888888888888888875 55778888888888888888887777 6788
Q ss_pred CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313 826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905 (1102)
Q Consensus 826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1102)
.+++|++|++++|.+++..|..+..++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------------- 448 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLT----------------------------------------------------- 448 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCT-----------------------------------------------------
T ss_pred ccccCCEEECcCCCCCccchhhhcCCC-----------------------------------------------------
Confidence 888888888888888887777766554
Q ss_pred CCceEECCCCCCCC-CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEc
Q 001313 906 LLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 984 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 984 (1102)
.|+.|++++|++++ .+|..|+.+++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|..+.++++|++|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 57888888888887 46778888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCcCcccCCccccccC-CCCccccCCCCCCCCCCC
Q 001313 985 AYNNLSGKIPERAAQFA-TFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 985 s~N~l~~~~p~~~~~~~-~~~~~~~~gN~~lC~~~~ 1019 (1102)
++|+++ .+|..+..+. ++...++.+||+.|+|+.
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 888888 4555455664 477778888888888764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-49 Score=482.36 Aligned_cols=513 Identities=20% Similarity=0.207 Sum_probs=427.9
Q ss_pred CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 438 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 438 (1102)
.+++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|.+.+.. +..+.++++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L 106 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSL 106 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC-TTSSTTCTTC
T ss_pred CCCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC-hhhcCCcccC
Confidence 46789999999988876665 7888999999999999998888888999999999999999987544 7888999999
Q ss_pred CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313 439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518 (1102)
Q Consensus 439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L 518 (1102)
++|++++|.+++.. ...+.+++ +|++|
T Consensus 107 ~~L~L~~n~l~~~~-~~~~~~l~----------------------------------------------------~L~~L 133 (606)
T 3vq2_A 107 ENLVAVETKLASLE-SFPIGQLI----------------------------------------------------TLKKL 133 (606)
T ss_dssp CEEECTTSCCCCSS-SSCCTTCT----------------------------------------------------TCCEE
T ss_pred CEEEccCCcccccc-ccccCCCC----------------------------------------------------CCCEE
Confidence 99999999876322 12244444 45555
Q ss_pred EeccccCCC-CCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcC----EEEccCCcCCCCCCchhhhcCCCCcEEE
Q 001313 519 RLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR----LLDVSKNNFQGHIPLEIGDILSRLTVFN 593 (1102)
Q Consensus 519 ~ls~~~~~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~----~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 593 (1102)
++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+ ++++++|.++ .++...+. ..+|++|+
T Consensus 134 ~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~ 210 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELT 210 (606)
T ss_dssp ECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEE
T ss_pred eCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCccccc-Cceeeeee
Confidence 555555544 44554 46899999999999999988777777666654 8999999998 56666666 35899999
Q ss_pred ccCCccc-ccCCcccCCCCCCcEEEccCccccc-----ccchhHhhcCC--CCcEEEc-cccccCCcccccccCCCccCe
Q 001313 594 ISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTG-----EIPEHLAMGCV--SLRSLAL-SNNNLEGHMFSRNFNLTNLIW 664 (1102)
Q Consensus 594 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-----~ip~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~ 664 (1102)
+++|.+. +..|..+.+++.|+.+++..+.+.+ .++...+.++. .++.+++ ..|.+++..+. +..+++|+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~ 289 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA 289 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence 9999987 5677889999999999987654432 22333333333 4667777 77788888877 889999999
Q ss_pred eeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313 665 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744 (1102)
Q Consensus 665 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 744 (1102)
|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|+.|++++|+..+.+ .+..+++|++|++++|.+
T Consensus 290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 999999997 455 889999999999999999 58884 4 9999999999999655443 677899999999999999
Q ss_pred ccCC--CCC-CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccC
Q 001313 745 SGSL--PSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEV 820 (1102)
Q Consensus 745 ~~~~--p~~-~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~ 820 (1102)
++.. |.. ..+++|++|++++|.+.+ +|. .|.++++|+.|++++|++.+..| ..+..+++|++|++++|++++..
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 8762 433 367899999999999885 665 89999999999999999999888 78999999999999999999999
Q ss_pred chhhcCCCCCCEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1102)
|..+..+++|++|++++|++++ .+|..|..++
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------------------------------------- 473 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT----------------------------------------------- 473 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-----------------------------------------------
Confidence 9999999999999999999998 4677776654
Q ss_pred cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC-C
Q 001313 900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-T 978 (1102)
Q Consensus 900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~ 978 (1102)
.|+.|+|++|++++..|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +
T Consensus 474 ------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~ 546 (606)
T 3vq2_A 474 ------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKS 546 (606)
T ss_dssp ------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTT
T ss_pred ------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhccc
Confidence 6899999999999999999999999999999999999999999999999999999999999 6787899987 6
Q ss_pred CCEEEcccCcCcccCCc
Q 001313 979 LAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 979 L~~l~ls~N~l~~~~p~ 995 (1102)
|+++++++|++.|.++.
T Consensus 547 L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 547 LAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEEECCSCCCCCSSTT
T ss_pred CcEEEccCCCcccCCcc
Confidence 99999999999998875
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.8e-50 Score=486.95 Aligned_cols=331 Identities=21% Similarity=0.272 Sum_probs=189.0
Q ss_pred CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCc-CCC-CCCchhhhc-----CCCCcEEEccCCcccccCCc--ccC
Q 001313 538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN-FQG-HIPLEIGDI-----LSRLTVFNISMNALDGSIPS--SFG 608 (1102)
Q Consensus 538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~-l~~-~ip~~~~~~-----l~~L~~L~Ls~n~l~~~~~~--~~~ 608 (1102)
++|++|++++|.+.+..+..+..+++|++|++++|+ ++| .+|..++.. +++|++|++++|+++ .+|. .|+
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 333333333333333334444455566666666665 665 566665541 266666666666666 5665 666
Q ss_pred CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCc-cCeeeccCccCcccCCCCcCCCC--C
Q 001313 609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCS--S 685 (1102)
Q Consensus 609 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~ 685 (1102)
++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+..++ +
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 66666666666666666666 2345556666666666555 44444555555 666666666655 4555554433 5
Q ss_pred CcEEEccCCcCCCCCCcccc-------CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCcccc
Q 001313 686 LQGLFLSNNSLSGKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 758 (1102)
Q Consensus 686 L~~L~l~~n~l~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~ 758 (1102)
|++|++++|++++.+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~----- 477 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL----- 477 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS-----
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh-----
Confidence 66666666666666665555 4555666666666555333333444555555555555554 2222110
Q ss_pred EEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc--CCCCCCEEEccCccccccCchhhcCCCCCCEEECc
Q 001313 759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD--GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 836 (1102)
Q Consensus 759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 836 (1102)
. ..+. .+.++++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|+
T Consensus 478 ---------~-~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 478 ---------K-DENE-NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp ---------E-ETTE-ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred ---------c-cccc-cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 0 0000 1223346666666666666 4555554 66666666666666665 56666666666666666
Q ss_pred CccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCC
Q 001313 837 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 916 (1102)
Q Consensus 837 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 916 (1102)
+|+ ++++|+
T Consensus 545 ~N~-----------------------------------------------------------------------~ls~N~ 553 (636)
T 4eco_A 545 NQR-----------------------------------------------------------------------DAQGNR 553 (636)
T ss_dssp SCB-----------------------------------------------------------------------CTTCCB
T ss_pred CCc-----------------------------------------------------------------------ccccCc
Confidence 553 124566
Q ss_pred CCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 917 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 917 l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
+.+.+|..++.+++|++|+|++|++ +.+|..+. ++|+.|||++|++.
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 6667777777777777777777777 46666655 56777777777665
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.4e-47 Score=465.32 Aligned_cols=509 Identities=18% Similarity=0.234 Sum_probs=266.1
Q ss_pred cccccHHHHHHHHhhhhhccCCCCCCCCCCCCCC--CCCC--cCc------------CceEecCCCCcEEEEEcCCCCCC
Q 001313 24 SEGCLNHERFALLQLKLFFIDPYNYLLDWVDDEG--ATDC--CQW------------ERVSCNNTMGRVVVLDLSQTHRG 87 (1102)
Q Consensus 24 ~~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~--~~~c--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 87 (1102)
...+..+|++||++||+++.+| +|+..++ ..+| |.| .||+|+. .|||++|+|+++.+.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 3456789999999999999877 7965210 1355 999 9999996 799999999999887
Q ss_pred cccccccccCCCCCCCCEEeC-CCCCCCCcccchhhh-------------------------------------------
Q 001313 88 EYWYLNASLFTPFQQLESLDL-RDNDIAGCVENEGLE------------------------------------------- 123 (1102)
Q Consensus 88 ~~~~~~~~~~~~~~~L~~L~L-s~~~~~~~~~~~~~~------------------------------------------- 123 (1102)
|.+ +..|+.+++|++||| ++|.+.|..+.....
T Consensus 337 G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 337 GRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp EEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 753 467899999999999 888766542210000
Q ss_pred --hh--cCCCCCcEEeCCC--CcCCcchhHhhhcCCCcCEEEcCCCcccCC-CChhhhccCCCCcEEEcCCCcCCccccc
Q 001313 124 --RL--SRLSNLKMLNLVG--NLFNNSILSSLARLSSLTSLDLSANRLKGS-IDIKELDSLRDLEKLNIGRNMIDKFVVS 196 (1102)
Q Consensus 124 --~l--~~l~~L~~L~Ls~--n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~ 196 (1102)
.+ .....++.+.+.. |.+++ +|..++++++|++|+|++|++++. ++... +..+.+...+..
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~~s~n~~~g~i-- 481 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---------EDANSDYAKQYE-- 481 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---------SCTTSHHHHHHT--
T ss_pred ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc---------cccccccccccC--
Confidence 00 0111222222222 44444 555555555555555555555541 00000 000000000011
Q ss_pred CCccccC--CCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCc-CCC-CCchhhcc-------CCCCCcEEecccC
Q 001313 197 KGPKRLS--RLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNR-LEG-SIDVKEFD-------SLSNLEELDMSYN 265 (1102)
Q Consensus 197 ~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~l~-------~l~~L~~L~L~~n 265 (1102)
|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|. +++ .+|. .++ .+++|++|++++|
T Consensus 482 --P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 --NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp --TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSS
T ss_pred --ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCC
Confidence 23444 55566666666655555555556666666666666655 544 3332 222 3346666666666
Q ss_pred ccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccccccccccceeecccchh
Q 001313 266 EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKELYMDDARI 345 (1102)
Q Consensus 266 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 345 (1102)
.++.++. ...++.+++|++|++++|.+.
T Consensus 559 ~L~~ip~--------------------------~~~l~~L~~L~~L~Ls~N~l~-------------------------- 586 (876)
T 4ecn_A 559 NLEEFPA--------------------------SASLQKMVKLGLLDCVHNKVR-------------------------- 586 (876)
T ss_dssp CCCBCCC--------------------------HHHHTTCTTCCEEECTTSCCC--------------------------
T ss_pred cCCccCC--------------------------hhhhhcCCCCCEEECCCCCcc--------------------------
Confidence 6542110 002333444444444444332
Q ss_pred hhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCC-CcEEEcCCCccc
Q 001313 346 ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS-LRILDVSSNQLI 424 (1102)
Q Consensus 346 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~ 424 (1102)
.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+.
T Consensus 587 -----------------------------~lp----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 587 -----------------------------HLE----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp -----------------------------BCC----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred -----------------------------cch----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 111 2233344444444444444 34444444444 444444444444
Q ss_pred cccCCcccccCC--ccCeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCC
Q 001313 425 GSISSSPLIHLT--SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 502 (1102)
Q Consensus 425 ~~i~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 502 (1102)
.+ |..+..++ +|+.|++++|++.+.++.
T Consensus 633 -~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~------------------------------------------------ 662 (876)
T 4ecn_A 633 -YI-PNIFNAKSVYVMGSVDFSYNKIGSEGRN------------------------------------------------ 662 (876)
T ss_dssp -SC-CSCCCTTCSSCEEEEECCSSCTTTTSSS------------------------------------------------
T ss_pred -cC-chhhhccccCCCCEEECcCCcCCCcccc------------------------------------------------
Confidence 23 22222222 244444444444322110
Q ss_pred CccCcccc--CCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCc
Q 001313 503 ITFPKFLY--NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 580 (1102)
Q Consensus 503 ~~~p~~l~--~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~ 580 (1102)
++..+. ...+|+.|++++|.+. .+|..++..+++|+.|++++|.+. .+|.
T Consensus 663 --l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-------------------------~ip~ 714 (876)
T 4ecn_A 663 --ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-------------------------SIPE 714 (876)
T ss_dssp --CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-------------------------CCCT
T ss_pred --chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-------------------------ccCh
Confidence 000000 1235566666666665 566666666666666666666555 2333
Q ss_pred hhhhc-------CCCCcEEEccCCcccccCCcccC--CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc
Q 001313 581 EIGDI-------LSRLTVFNISMNALDGSIPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651 (1102)
Q Consensus 581 ~~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 651 (1102)
.++.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++ .+++|+.|+|++|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~---- 787 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQR---- 787 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCB----
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCC----
Confidence 22221 225666666666666 4555554 66666666666666663 565553 56666666666654
Q ss_pred ccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCC
Q 001313 652 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 731 (1102)
Q Consensus 652 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 731 (1102)
++++|.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++....+..++..
T Consensus 788 --------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 788 --------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred --------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence 3445555555666666666666666666666 45555544 466666666666654444444444
Q ss_pred CcccEEEccCccc
Q 001313 732 RILQILDISDNNI 744 (1102)
Q Consensus 732 ~~L~~L~ls~n~l 744 (1102)
..+..+.+.+|+.
T Consensus 851 ~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 851 IEAGMYVLLYDKT 863 (876)
T ss_dssp HHTTCCEEECCTT
T ss_pred ccchheeecCCCc
Confidence 4444444554443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-45 Score=444.68 Aligned_cols=397 Identities=20% Similarity=0.246 Sum_probs=315.0
Q ss_pred cCCCCcEEEccCCCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC----cEEEccCCcccccCCcccCCC
Q 001313 536 NNTKLRQLSLVNDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL----TVFNISMNALDGSIPSSFGNM 610 (1102)
Q Consensus 536 ~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~l 610 (1102)
++++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+.. +++| +.+++++|.+++..|..|...
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~ 200 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC
Confidence 444455555555544442 2444556667777777777776444444443 5666 788888888888777777766
Q ss_pred CCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCC------cccccccCCC--ccCeeeccCc-cCcccCCCCcC
Q 001313 611 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG------HMFSRNFNLT--NLIWLQLEGN-HFVGEIPQSLS 681 (1102)
Q Consensus 611 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~ 681 (1102)
+|+.|++++|............+++.++.+.+....+.. .....+..++ .++.++++++ .+.+..|..+.
T Consensus 201 -~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~ 279 (570)
T 2z63_A 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279 (570)
T ss_dssp -EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG
T ss_pred -cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc
Confidence 788888888755433223334567777776665443321 2222233333 3567777777 67778888899
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEE
Q 001313 682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 761 (1102)
Q Consensus 682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ 761 (1102)
.+++|++|++++|.+. .+|.++..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|+
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD 353 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence 9999999999999998 688888888 9999999999988 5554 4678999999999998877766 6788999999
Q ss_pred ccCccccccc--CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCc
Q 001313 762 LSKNMLHGQL--KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNN 838 (1102)
Q Consensus 762 l~~n~l~~~i--~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N 838 (1102)
+++|++.+.. |. .+.++++|++|++++|.+++..+. +..+++|++|++++|++++..| ..+..+++|++|++++|
T Consensus 354 l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 354 LSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp CCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred CcCCccCccccccc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 9999988643 44 788999999999999999976555 9999999999999999998776 57899999999999999
Q ss_pred cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313 839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918 (1102)
Q Consensus 839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 918 (1102)
.+++..|..|..++ .|+.|+|++|+++
T Consensus 432 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~ 458 (570)
T 2z63_A 432 HTRVAFNGIFNGLS-----------------------------------------------------SLEVLKMAGNSFQ 458 (570)
T ss_dssp CCEECCTTTTTTCT-----------------------------------------------------TCCEEECTTCEEG
T ss_pred cccccchhhhhcCC-----------------------------------------------------cCcEEECcCCcCc
Confidence 99988888776654 6899999999998
Q ss_pred -CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 919 -GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 919 -~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+.+|..+..+++|++|+|++|++++..|..|+++++|+.|++++|++++.+|..+..+++|+.+++++|+++|.+|.
T Consensus 459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 67999999999999999999999999999999999999999999999999888999999999999999999999987
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-45 Score=448.83 Aligned_cols=356 Identities=21% Similarity=0.289 Sum_probs=262.5
Q ss_pred CCcCCCCCCchhhhcCCCCcEEEccCCccccc-----------------CCcccC--CCCCCcEEEccCcccccccchhH
Q 001313 571 KNNFQGHIPLEIGDILSRLTVFNISMNALDGS-----------------IPSSFG--NMNFLQFLDLSNNQLTGEIPEHL 631 (1102)
Q Consensus 571 ~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~ip~~~ 631 (1102)
.|+++| +|..++. +++|++|++++|.+++. +|..++ ++++|++|++++|++.|.+|..+
T Consensus 192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 456665 6666655 67777777777777764 677766 77777777777777777777555
Q ss_pred hhcCCCCcEEEccccc-cCC-cccccccCC------CccCeeeccCccCcccCCC--CcCCCCCCcEEEccCCcCCCCCC
Q 001313 632 AMGCVSLRSLALSNNN-LEG-HMFSRNFNL------TNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIP 701 (1102)
Q Consensus 632 ~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p 701 (1102)
..+++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|++|++++|+++|.+|
T Consensus 270 -~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 270 -KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp -TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred -hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 366777777777776 666 666655554 77777777777777 6666 77777777777777777777777
Q ss_pred ccccCCCCccEEECCCCcccCCCcccccCCCc-ccEEEccCcccccCCCCCCC---CccccEEEccCcccccccCccccc
Q 001313 702 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGSLPSCYD---FVCIEQVHLSKNMLHGQLKEGTFF 777 (1102)
Q Consensus 702 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~p~~~~---~~~L~~L~l~~n~l~~~i~~~~~~ 777 (1102)
.++.+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|..+. +++|+.|++++|++.+.+|. .|.
T Consensus 348 -~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~ 423 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFD 423 (636)
T ss_dssp -CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSC
T ss_pred -hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh-hhc
Confidence 7777777777777777777 66667777777 777777777777 5665543 23677777777777776666 565
Q ss_pred -------CccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchh-hcCCC-------CCCEEECcCccCCC
Q 001313 778 -------NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLN-------QLQLLDLSNNNLHG 842 (1102)
Q Consensus 778 -------~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~-------~L~~L~Ls~N~l~~ 842 (1102)
.+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|.. +.... +|+.|+|++|+++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 6678888888888888544445566888888888888888 55543 33232 8888888888888
Q ss_pred CCCcccc--cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313 843 HIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 920 (1102)
Q Consensus 843 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 920 (1102)
.+|..+. .++ .|+.|+|++|++++
T Consensus 502 ~lp~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 502 KLSDDFRATTLP-----------------------------------------------------YLVGIDLSYNSFSK- 527 (636)
T ss_dssp BCCGGGSTTTCT-----------------------------------------------------TCCEEECCSSCCSS-
T ss_pred ccChhhhhccCC-----------------------------------------------------CcCEEECCCCCCCC-
Confidence 5665543 332 67888888888887
Q ss_pred CcccccCCCcCCEEEC------CCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccC
Q 001313 921 IPPQIGNLTKIQTLNL------SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI 993 (1102)
Q Consensus 921 ip~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 993 (1102)
+|..+..+++|++|+| ++|++.+.+|..|+++++|+.|||++|++ +.+|..+. ++|++||+++|++...-
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 8888888888888888 56788889999999999999999999999 57888766 78999999999876533
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-44 Score=432.70 Aligned_cols=441 Identities=22% Similarity=0.218 Sum_probs=312.4
Q ss_pred cccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEE
Q 001313 514 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 593 (1102)
Q Consensus 514 ~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~ 593 (1102)
+++.|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEECTTT-TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred cccEEEccCCccCccChhH-hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc-Ccccccccc
Confidence 4555555555554433332 33555555555555555555444555555555555555555532222222 255555555
Q ss_pred ccCCcccccCCcccCCCCCCcEEEccCccccc-ccchhHhhcCCCCcEEEccccccCCcccccccCCCcc----Ceeecc
Q 001313 594 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL----IWLQLE 668 (1102)
Q Consensus 594 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~ 668 (1102)
+++|++++..+..|+++++|++|++++|++++ .+|..+ .++++|++|++++|++++..+..+..+++| +.|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 55555554444445555555555555555553 234433 345555555555555555555555555555 555555
Q ss_pred CccCcccCCCCcCCCCCCcEEEccCC------------------------------------------------------
Q 001313 669 GNHFVGEIPQSLSKCSSLQGLFLSNN------------------------------------------------------ 694 (1102)
Q Consensus 669 ~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------------------------------------ 694 (1102)
+|.+.+..|..+..+ +|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 555555544444433 4555555444
Q ss_pred ----cCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccc
Q 001313 695 ----SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 770 (1102)
Q Consensus 695 ----~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~ 770 (1102)
.+.+..|..+..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccc
Confidence 455566777778888888888888887 467777777 8888888888887 4554 4667888888888887765
Q ss_pred cCcccccCccCccEEEccCccCcccC--CccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCC-cc
Q 001313 771 LKEGTFFNCLTLMILDLSYNHLNGNI--PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SC 847 (1102)
Q Consensus 771 i~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~ 847 (1102)
++. ..+++|++|++++|++++.. |..+.++++|++|++++|++++..+. +..+++|+.|++++|.+++..| ..
T Consensus 341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 544 56788888888888887654 66778888888888888888865444 8888888888888888877655 33
Q ss_pred cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccC
Q 001313 848 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGN 927 (1102)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~ 927 (1102)
+.+++ .|+.|++++|.+++..|..|..
T Consensus 417 ~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 417 FLSLR-----------------------------------------------------NLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp TTTCT-----------------------------------------------------TCCEEECTTSCCEECCTTTTTT
T ss_pred hhcCC-----------------------------------------------------CCCEEeCcCCcccccchhhhhc
Confidence 43332 6899999999999999999999
Q ss_pred CCcCCEEECCCCCCC-CCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCcc
Q 001313 928 LTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNES 1006 (1102)
Q Consensus 928 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 1006 (1102)
+++|++|+|++|.++ +.+|..|+.+++|+.|||++|++++..|..+..+++|++|++++|++++..|..+..+..+..+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999998 6899999999999999999999999999999999999999999999999888777888899999
Q ss_pred ccCCCCCCCCCCC
Q 001313 1007 SYEGNPFLCGPPL 1019 (1102)
Q Consensus 1007 ~~~gN~~lC~~~~ 1019 (1102)
++.+||+.|+++.
T Consensus 524 ~l~~N~~~~~~~~ 536 (570)
T 2z63_A 524 WLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EecCCcccCCCcc
Confidence 9999999998764
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-43 Score=428.55 Aligned_cols=465 Identities=20% Similarity=0.207 Sum_probs=351.4
Q ss_pred CCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEE
Q 001313 387 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 466 (1102)
Q Consensus 387 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 466 (1102)
++|++|++++|.+++..|..+.++++|++|++++|++.+ +++..+.++++|++|++++|.++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~----------------- 87 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLS----------------- 87 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCC-----------------
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccC-----------------
Confidence 466677777776666556666666666666666666653 22445555555555555555443
Q ss_pred ecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEcc
Q 001313 467 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 546 (1102)
Q Consensus 467 ~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~ 546 (1102)
+..|. .+..+++|++|+++
T Consensus 88 ------------------------------------------------------------~~~~~-~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 88 ------------------------------------------------------------SLSSS-WFGPLSSLKYLNLM 106 (549)
T ss_dssp ------------------------------------------------------------SCCHH-HHTTCTTCCEEECT
T ss_pred ------------------------------------------------------------ccCHH-HhccCCCCcEEECC
Confidence 22222 23456666666666
Q ss_pred CCCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313 547 NDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625 (1102)
Q Consensus 547 ~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 625 (1102)
+|.+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++.+++|++|+++.|.+.
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~- 185 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA- 185 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-
Confidence 6666542 23456677888888888888656777554555899999999999999999999999999999999999987
Q ss_pred ccchhHhhcCCCCcEEEccccccCCcc---cccccCCCccCeeeccCccCcccCC----CCcCCCCCCcEEEccCCcCCC
Q 001313 626 EIPEHLAMGCVSLRSLALSNNNLEGHM---FSRNFNLTNLIWLQLEGNHFVGEIP----QSLSKCSSLQGLFLSNNSLSG 698 (1102)
Q Consensus 626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~ 698 (1102)
.+|...+..+++|++|++++|++++.. ......+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 788887778899999999999998753 1223457889999999998876443 344667889999999998775
Q ss_pred CC------CccccCCCCccEEECCCCcccCC-----CcccccCCCcccEEEccCcccccCCCCCC--CCccccEEEccCc
Q 001313 699 KI------PRWLGNLTVLRHIIMPKNHIEGP-----IPLEFCQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKN 765 (1102)
Q Consensus 699 ~~------p~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~--~~~~L~~L~l~~n 765 (1102)
.. ...+..+++|+.|++.++.+... ++..+...++|+.|++++|.+. .+|..+ .+++|+.|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 31 13456678889999888876532 1222344578999999999886 556544 4788999999999
Q ss_pred ccccccCc--ccccCccCccEEEccCccCcccCC--ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313 766 MLHGQLKE--GTFFNCLTLMILDLSYNHLNGNIP--DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 766 ~l~~~i~~--~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
++.+.+|. ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 99887653 246788999999999999986543 45888999999999999998 68888888999999999999987
Q ss_pred CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC
Q 001313 842 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI 921 (1102)
Q Consensus 842 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i 921 (1102)
+. |.+ +++.|+.|||++|++++.+
T Consensus 424 ~l-~~~-------------------------------------------------------~~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 424 VV-KTC-------------------------------------------------------IPQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CC-CTT-------------------------------------------------------SCTTCSEEECCSSCCSCCC
T ss_pred cc-cch-------------------------------------------------------hcCCceEEECCCCChhhhc
Confidence 32 221 1236889999999998753
Q ss_pred cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 922 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 922 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
..+++|++|+|++|+|+ .+|. .+.+++|+.|||++|++++.+|..+..+++|++|++++|++.|.+|.
T Consensus 448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 57889999999999999 6676 56789999999999999999898899999999999999999998885
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-43 Score=425.98 Aligned_cols=472 Identities=20% Similarity=0.219 Sum_probs=331.6
Q ss_pred CCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCcc
Q 001313 359 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 438 (1102)
Q Consensus 359 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 438 (1102)
.++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+.+.. +..+.++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTC
T ss_pred CCCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCC
Confidence 46788888888888766555 6788889999999999888877788889999999999999887543 5667888888
Q ss_pred CeeecCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEE
Q 001313 439 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 518 (1102)
Q Consensus 439 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L 518 (1102)
++|++++|.+++.. .|..+..+++|+.|
T Consensus 101 ~~L~Ls~n~l~~~~----------------------------------------------------~~~~~~~l~~L~~L 128 (549)
T 2z81_A 101 KYLNLMGNPYQTLG----------------------------------------------------VTSLFPNLTNLQTL 128 (549)
T ss_dssp CEEECTTCCCSSSC----------------------------------------------------SSCSCTTCTTCCEE
T ss_pred cEEECCCCcccccc----------------------------------------------------hhhhhhccCCccEE
Confidence 88888888766311 12223344555666
Q ss_pred EeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCc
Q 001313 519 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 598 (1102)
Q Consensus 519 ~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 598 (1102)
++++|...+.+|...+..+++|++|++++|.+.+..+..+..+++|+.|+++.|.+. .+|..++..+++|++|++++|+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc
Confidence 666665545555444567788888888888888777777888888999999988876 6676666668899999999999
Q ss_pred ccccC--C-cccCCCCCCcEEEccCcccccccchhHh---hcCCCCcEEEccccccCCccc------ccccCCCccCeee
Q 001313 599 LDGSI--P-SSFGNMNFLQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNNNLEGHMF------SRNFNLTNLIWLQ 666 (1102)
Q Consensus 599 l~~~~--~-~~~~~l~~L~~L~Ls~n~l~~~ip~~~~---~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~ 666 (1102)
+++.. | .....+++|+.|++++|++++..+..+. ..+++|+.+++++|.+.+... ..+..+++|+.|+
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 88642 2 2334678899999999988865554432 345677888888877655321 1223444555555
Q ss_pred ccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccc-cCCCcccEEEccCcccc
Q 001313 667 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDISDNNIS 745 (1102)
Q Consensus 667 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~ 745 (1102)
+.++.+.... .+. .++..+...++|+.|++++|.++ .+|..+ ..+++|++|++++|+++
T Consensus 288 l~~~~i~~~~--~~~-----------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 288 IRRLHIPQFY--LFY-----------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp EESCBCSCGG--GSC-----------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred ccccccchhh--hcc-----------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence 5554433210 000 01111122334555555555544 333332 34555555555555555
Q ss_pred cCCCC----CCCCccccEEEccCcccccccC-cccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313 746 GSLPS----CYDFVCIEQVHLSKNMLHGQLK-EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 820 (1102)
Q Consensus 746 ~~~p~----~~~~~~L~~L~l~~n~l~~~i~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 820 (1102)
+.+|. ...+++|+.|++++|++++..+ ...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l 425 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cc
Confidence 43321 1234555555555555544221 125888999999999999999 68889999999999999999998 44
Q ss_pred chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1102)
|..+ .++|++||+++|++++.++ .+
T Consensus 426 ~~~~--~~~L~~L~Ls~N~l~~~~~----~l------------------------------------------------- 450 (549)
T 2z81_A 426 KTCI--PQTLEVLDVSNNNLDSFSL----FL------------------------------------------------- 450 (549)
T ss_dssp CTTS--CTTCSEEECCSSCCSCCCC----CC-------------------------------------------------
T ss_pred cchh--cCCceEEECCCCChhhhcc----cC-------------------------------------------------
Confidence 5443 3689999999999986531 11
Q ss_pred CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970 (1102)
Q Consensus 901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 970 (1102)
+.|+.|+|++|+++ .+|+ ...+++|++|||++|++++.+|..|+.+++|+.||+++|++++..|
T Consensus 451 ----~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 451 ----PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ----TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ----ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 26899999999998 6776 5789999999999999999999999999999999999999998887
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-43 Score=434.49 Aligned_cols=356 Identities=19% Similarity=0.221 Sum_probs=198.4
Q ss_pred CCCchhh-hcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcc-ccc-ccchhHhh------cCCCCcEEEccccc
Q 001313 577 HIPLEIG-DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ-LTG-EIPEHLAM------GCVSLRSLALSNNN 647 (1102)
Q Consensus 577 ~ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~ip~~~~~------~l~~L~~L~L~~n~ 647 (1102)
.+|..++ ..+++|++|+|++|++.+.+|..|+++++|++|++++|+ ++| .+|..+.. .+++|++|++++|+
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 3555553 125666666666666666666666666666666666665 655 55554421 12255555555555
Q ss_pred cCCcccc--cccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCC-ccEEECCCCcccCCC
Q 001313 648 LEGHMFS--RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV-LRHIIMPKNHIEGPI 724 (1102)
Q Consensus 648 l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~ 724 (1102)
++ .+|. .+.++++|++|++++|.++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 55 3444 4555555555555555555 444 5555555555555555555 45555555555 555555555554 44
Q ss_pred cccccCCCc--ccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc--CccCccEEEccCccCcccCCcc-
Q 001313 725 PLEFCQLRI--LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF--NCLTLMILDLSYNHLNGNIPDR- 799 (1102)
Q Consensus 725 ~~~~~~l~~--L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~- 799 (1102)
|..+..++. |+.|++++|++.+.+|... . .+. .+++|+.|++++|+++ .+|..
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~--------------------~-~l~~~~~~~L~~L~Ls~N~L~-~lp~~~ 692 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--------------------C-SMDDYKGINASTVTLSYNEIQ-KFPTEL 692 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCS--------------------S-CTTTCCCCCEEEEECCSSCCC-SCCHHH
T ss_pred chhhhccccCCCCEEECcCCcCCCccccch--------------------h-hhccccCCCcCEEEccCCcCC-ccCHHH
Confidence 444444332 5555555555554443221 0 111 2335666666666665 23333
Q ss_pred ccCCCCCCEEEccCccccccCchhhcC--------CCCCCEEECcCccCCCCCCcccc--cccccccccCCCCCCCccch
Q 001313 800 VDGLSQLSYLILAHNNLEGEVPIQLCR--------LNQLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETS 869 (1102)
Q Consensus 800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~ 869 (1102)
+..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+.
T Consensus 693 ~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~----------------- 753 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP----------------- 753 (876)
T ss_dssp HHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT-----------------
T ss_pred HccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC-----------------
Confidence 235566666666666665 44443322 126666666666666 4444432 221
Q ss_pred hhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCC------CCCCC
Q 001313 870 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAG 943 (1102)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~------N~l~~ 943 (1102)
.|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+
T Consensus 754 ------------------------------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 754 ------------------------------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp ------------------------------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ------------------------------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 46666666666665 566666666666666654 77777
Q ss_pred CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCC--CCC
Q 001313 944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC--GPP 1018 (1102)
Q Consensus 944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC--~~~ 1018 (1102)
.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++....+.............+.+|+..+ ||+
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 8888888888888888888888 57777655 578888888887765544433333233334445554433 554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=421.91 Aligned_cols=455 Identities=18% Similarity=0.168 Sum_probs=294.4
Q ss_pred cEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeee
Q 001313 363 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 442 (1102)
Q Consensus 363 ~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~ 442 (1102)
++|++++|.++. +|. .+. ++|++|++++|.+.+..|..+.++++|++|++++|++++.. +..+.++++|++|+
T Consensus 3 ~~l~ls~n~l~~-ip~---~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK---DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSCCSS-CCC---SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEE
T ss_pred ceEecCCCCccc-ccc---ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcC-hHHhhcccCCCEEe
Confidence 467888888774 333 333 78888888888888877788888888888888888877543 66777777777777
Q ss_pred cCCcccccccCccccccCCcceEEecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEecc
Q 001313 443 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH 522 (1102)
Q Consensus 443 L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~ 522 (1102)
+++|+++. ++. . .+++|++|++++
T Consensus 76 Ls~N~l~~-lp~-----------------------------------------------------~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 76 LSHNKLVK-ISC-----------------------------------------------------H--PTVNLKHLDLSF 99 (520)
T ss_dssp CCSSCCCE-EEC-----------------------------------------------------C--CCCCCSEEECCS
T ss_pred cCCCceee-cCc-----------------------------------------------------c--ccCCccEEeccC
Confidence 77776651 111 1 123344444444
Q ss_pred ccCCC-CCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC--cEEEccCCcc
Q 001313 523 IKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL--TVFNISMNAL 599 (1102)
Q Consensus 523 ~~~~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L--~~L~Ls~n~l 599 (1102)
|.+.+ .+|.. ++++++|++|++++|.+.+ ..+.. +++| ++|++++|.+
T Consensus 100 N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~-------------------------l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 100 NAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLP-------------------------IAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGG-------------------------GTTSCEEEEEEEECTT
T ss_pred Cccccccchhh-hccCCcceEEEecCcccch---hhccc-------------------------cccceeeEEEeecccc
Confidence 44433 23332 2344444444444444332 11222 3444 5555555555
Q ss_pred --cccCCcccCCCC-CCcEEEccCcccccccchhHhhcCCCCcEEEccccc-------cCCcccccccCCCccCeeeccC
Q 001313 600 --DGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-------LEGHMFSRNFNLTNLIWLQLEG 669 (1102)
Q Consensus 600 --~~~~~~~~~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~ 669 (1102)
.+..|..+..+. ....+++++|++.+.++...+..+++|+.|++++|. +.+.++ .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 445555554443 233445555555555555444455555555555554 333333 344555555555555
Q ss_pred ccCcccCCCCcC---CCCCCcEEEccCCcCCCCCCccc-----cCCCCccEEECCCCcccCCCc-ccccCC---CcccEE
Q 001313 670 NHFVGEIPQSLS---KCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIP-LEFCQL---RILQIL 737 (1102)
Q Consensus 670 n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L 737 (1102)
|.+++..+..+. ..++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 544432111110 12355666666666655555555 5555555555555554 222 222222 344555
Q ss_pred EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817 (1102)
Q Consensus 738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 817 (1102)
++++|. +.+. + .+..+++|++|++++|++++.+|..++.+++|++|++++|+++
T Consensus 308 ~l~~n~-----------------------l~~~-~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 308 TVSGTR-----------------------MVHM-L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp EEESSC-----------------------CCCC-C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred EcCCCc-----------------------cccc-c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 554444 3321 1 1257788999999999999988999999999999999999999
Q ss_pred c--cCchhhcCCCCCCEEECcCccCCCCCCcc-cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccc
Q 001313 818 G--EVPIQLCRLNQLQLLDLSNNNLHGHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 894 (1102)
Q Consensus 818 ~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1102)
+ .+|..+..+++|++|++++|++++.+|.. +..+
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l------------------------------------------- 398 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT------------------------------------------- 398 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC-------------------------------------------
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccC-------------------------------------------
Confidence 7 56788999999999999999998866643 3322
Q ss_pred eeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh-h
Q 001313 895 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-L 973 (1102)
Q Consensus 895 ~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l 973 (1102)
+.|+.|++++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|||++|++++ +|.. +
T Consensus 399 ----------~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 464 (520)
T 2z7x_B 399 ----------KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIF 464 (520)
T ss_dssp ----------TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTT
T ss_pred ----------ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHh
Confidence 2689999999999988888775 79999999999999 788888899999999999999995 6655 8
Q ss_pred hcCCCCCEEEcccCcCcccCCc
Q 001313 974 VELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 974 ~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
..+++|++|++++|+++|.++.
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCcccEEECcCCCCcccCCc
Confidence 8999999999999999998763
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=415.11 Aligned_cols=436 Identities=20% Similarity=0.218 Sum_probs=371.0
Q ss_pred CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEE
Q 001313 513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 592 (1102)
Q Consensus 513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L 592 (1102)
++++.|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 78999999999998866655 568999999999999999988888999999999999999998 68876 38999999
Q ss_pred EccCCcccc-cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCC--cEEEcccccc--CCcccccccCCC-ccCeee
Q 001313 593 NISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL--RSLALSNNNL--EGHMFSRNFNLT-NLIWLQ 666 (1102)
Q Consensus 593 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~ 666 (1102)
++++|.+++ .+|..|+++++|++|++++|++++ ..+..+++| +.|++++|.+ .+..|..+..+. +...++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999997 478999999999999999999985 234567888 9999999999 788888777665 455678
Q ss_pred ccCccCcccCCC-CcCCCCCCcEEEccCCc-------CCCCCCccccCCCCccEEECCCCcccCCCccccc---CCCccc
Q 001313 667 LEGNHFVGEIPQ-SLSKCSSLQGLFLSNNS-------LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC---QLRILQ 735 (1102)
Q Consensus 667 L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~ 735 (1102)
+++|.+.+.++. .+..+++|+.|++++|. +.+.+| .++.+++|+.|++++|.+++..+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 899988876654 67889999999999997 666666 788999999999999988764332221 246899
Q ss_pred EEEccCcccccCCCCCC------CCccccEEEccCcccccccCcccccCc---cCccEEEccCccCcccCCccccCCCCC
Q 001313 736 ILDISDNNISGSLPSCY------DFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDLSYNHLNGNIPDRVDGLSQL 806 (1102)
Q Consensus 736 ~L~ls~n~l~~~~p~~~------~~~~L~~L~l~~n~l~~~i~~~~~~~~---~~L~~L~Ls~n~l~~~~p~~~~~l~~L 806 (1102)
+|++++|+++|.+|..+ .++.|+.+++++|.+ .+|...+..+ .+|+.|++++|.+.+.. .+..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 99999999999888764 578999999999999 5774355554 67999999999987532 23688999
Q ss_pred CEEEccCccccccCchhhcCCCCCCEEECcCccCCC--CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313 807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884 (1102)
Q Consensus 807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1102)
++|++++|++++.+|..+..+++|++|++++|++++ .+|..+..++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-------------------------------- 374 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-------------------------------- 374 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT--------------------------------
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC--------------------------------
Confidence 999999999999999999999999999999999986 4455555443
Q ss_pred cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccc-ccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCC
Q 001313 885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 963 (1102)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 963 (1102)
.|+.|||++|++++.+|.. +..+++|++|+|++|++++.+|..+. ++|+.|||++|
T Consensus 375 ---------------------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 375 ---------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp ---------------------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred ---------------------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 6899999999999877765 88999999999999999999888875 79999999999
Q ss_pred cCcccCchhhhcCCCCCEEEcccCcCcccCCcc-ccccCCCCccccCCCCCCCCCCC
Q 001313 964 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER-AAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 964 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
+++ .+|..+..+++|++|++++|++++ +|.. +..+..+..+++.+||+.|+|+.
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999 789888899999999999999995 5553 66778888899999999998753
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-40 Score=408.42 Aligned_cols=165 Identities=24% Similarity=0.311 Sum_probs=117.8
Q ss_pred cCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC-CCCCccccccccc
Q 001313 777 FNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH-GHIPSCFDNTTLH 854 (1102)
Q Consensus 777 ~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~ 854 (1102)
..+++|+.++++.|......+ ..+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..|..++
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-- 494 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-- 494 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT--
T ss_pred cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc--
Confidence 334444444444443333222 23445555555555555555555555555666666666666532 23444444333
Q ss_pred ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEE
Q 001313 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 934 (1102)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 934 (1102)
.|+.|||++|++++.+|..|+++++|++|
T Consensus 495 ---------------------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 495 ---------------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ---------------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ---------------------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 56777888888888888889999999999
Q ss_pred ECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcC-CCCCEEEcccCcCcccCC
Q 001313 935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 935 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~ls~N~l~~~~p 994 (1102)
+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.+.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999999999999999999988 689999999999999775
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-40 Score=406.60 Aligned_cols=514 Identities=21% Similarity=0.237 Sum_probs=372.2
Q ss_pred CccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceEEe
Q 001313 388 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 467 (1102)
Q Consensus 388 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 467 (1102)
++++|+|++|.+++..+..|.++++|++|++++|+++ .+++..|.++++|++|+|++|+++ .++...|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 5667777777766555566677777777777777665 344556666666666666666655 23333444455555554
Q ss_pred cCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccC
Q 001313 468 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN 547 (1102)
Q Consensus 468 l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~ 547 (1102)
+++|.+.. +|...++++++|++|++++
T Consensus 131 Ls~N~l~~-----------------------------------------------------l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 131 AVETNLAS-----------------------------------------------------LENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CTTSCCCC-----------------------------------------------------STTCCCTTCTTCCEEECCS
T ss_pred CCCCcCCC-----------------------------------------------------CChhhhhcCcccCeecccc
Confidence 44444332 1111134555555566655
Q ss_pred CCCcCC-CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCC----CCcEEEccCCcccccCCcccCCCCCCcEEEccCcc
Q 001313 548 DSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS----RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 622 (1102)
Q Consensus 548 n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 622 (1102)
|.+.+. .+..+..+++|++|++++|++++..|..+.. +. ....++++.|.+....+..+. ...++.+++.+|.
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNF 235 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCC
T ss_pred CccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccc
Confidence 555442 2334456677777777777777544444432 22 345788888888866655554 3457788888887
Q ss_pred cccccchhHhhcCCCCcEEEcccccc------CCcccccccCCCccCeeeccCccCc---ccCCCCcCCCCCCcEEEccC
Q 001313 623 LTGEIPEHLAMGCVSLRSLALSNNNL------EGHMFSRNFNLTNLIWLQLEGNHFV---GEIPQSLSKCSSLQGLFLSN 693 (1102)
Q Consensus 623 l~~~ip~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~ 693 (1102)
....++...+.++..++...+..+.. .......+.....+....+..+... ...+..+..+.+++.+++.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 76666666677788888777654433 2333344455556666665554432 22344566778899999998
Q ss_pred CcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccc--cc
Q 001313 694 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG--QL 771 (1102)
Q Consensus 694 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~--~i 771 (1102)
+.+.... .+.....++.|++.+|.+.+..+. .+..|+.++++.|.+.. .+....+++|+.++++.|.+.. ..
T Consensus 316 ~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 316 VTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp CEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred ccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC-Ccccccccccccchhhcccccccccc
Confidence 8876432 355667899999999988765443 45678889999888764 3445578899999999998853 33
Q ss_pred CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850 (1102)
Q Consensus 772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 850 (1102)
+. .+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 390 ~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 390 SQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 44 66778899999999999875 55678889999999999888876654 56888999999999999999888876655
Q ss_pred ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC-CCCcccccCCC
Q 001313 851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLT 929 (1102)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~ip~~~~~l~ 929 (1102)
.. .++.|+|++|++. +.+|..|..++
T Consensus 468 ~~-----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 468 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ch-----------------------------------------------------hhhhhhhhhcccccccCchhhhhcc
Confidence 43 6889999999854 46788999999
Q ss_pred cCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccccc-CCCCcccc
Q 001313 930 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF-ATFNESSY 1008 (1102)
Q Consensus 930 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~-~~~~~~~~ 1008 (1102)
+|++|||++|+|++.+|..|+++++|++|+|++|+|++..|..|.++++|++||+++|++++.+|..+..+ .++..+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999877766 57888999
Q ss_pred CCCCCCCCCCC
Q 001313 1009 EGNPFLCGPPL 1019 (1102)
Q Consensus 1009 ~gN~~lC~~~~ 1019 (1102)
.+||+.|+|.+
T Consensus 575 ~~Np~~C~C~~ 585 (635)
T 4g8a_A 575 TQNDFACTCEH 585 (635)
T ss_dssp TTCCBCCSGGG
T ss_pred eCCCCcccCCc
Confidence 99999999864
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-40 Score=387.76 Aligned_cols=376 Identities=20% Similarity=0.197 Sum_probs=318.7
Q ss_pred CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644 (1102)
Q Consensus 565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 644 (1102)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45677777776 6776 2 47889999999999888888899999999999999988878877777788999999999
Q ss_pred ccccCCcccccccCCCccCeeeccCccCcccCCC--CcCCCCCCcEEEccCCcCCCCCCcc-ccCCCCccEEECCCCccc
Q 001313 645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIE 721 (1102)
Q Consensus 645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~ 721 (1102)
+|++++..+..+.++++|++|++++|.+++..+. .+..+++|++|++++|++++..|.. +.++++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9999888888888999999999999998875544 3888899999999999998877765 788999999999999998
Q ss_pred CCCcccccCC--CcccEEEccCcccccCCCCC---------CCCccccEEEccCcccccccCcccccCc---cCccEEEc
Q 001313 722 GPIPLEFCQL--RILQILDISDNNISGSLPSC---------YDFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDL 787 (1102)
Q Consensus 722 ~~~~~~~~~l--~~L~~L~ls~n~l~~~~p~~---------~~~~~L~~L~l~~n~l~~~i~~~~~~~~---~~L~~L~L 787 (1102)
+..+..+..+ .+|+.|++++|.+.+..+.. +..++|++|++++|++.+.+|. .+... ++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence 8888887766 68899999999888655443 2457899999999999887776 55543 78999999
Q ss_pred cCccCcccC----------CccccC--CCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313 788 SYNHLNGNI----------PDRVDG--LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855 (1102)
Q Consensus 788 s~n~l~~~~----------p~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 855 (1102)
++|.+.+.. +..+.+ .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..|.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 323 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT--- 323 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence 988655422 222222 36899999999999999999999999999999999999988888776654
Q ss_pred cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935 (1102)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 935 (1102)
.|+.|+|++|++++..|..|+.+++|++|+
T Consensus 324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 689999999999998899999999999999
Q ss_pred CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccccc
Q 001313 936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 1000 (1102)
Q Consensus 936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 1000 (1102)
|++|++++..|..|.++++|++|||++|++++..+..+..+++|++|++++|+++|.+|. ..++
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~l 417 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYL 417 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT-THHH
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc-chHH
Confidence 999999999999999999999999999999987777889999999999999999999996 4444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.5e-38 Score=380.64 Aligned_cols=412 Identities=21% Similarity=0.205 Sum_probs=267.8
Q ss_pred CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEE
Q 001313 513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 592 (1102)
Q Consensus 513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L 592 (1102)
...+.++++++.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|++++..|..+.. +++|++|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEE
Confidence 344789999998886 666433 78899999999998888788888999999999999988555555544 8899999
Q ss_pred EccCCcccccCCcccCCCCCCcEEEccCccccc-ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc
Q 001313 593 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 671 (1102)
Q Consensus 593 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 671 (1102)
++++|+++ .+|.. .+++|++|++++|++++ .+|.. +.++++|++|++++|++++.....+.++ +|++|++++|.
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESS
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccc
Confidence 99999988 45555 78899999999999884 22344 4678899999999998876433333333 34999999998
Q ss_pred C--cccCCCCcCCCC-CCcEEEccCCcCCCCCCc-cccCCCCccEEECCCCc----------------------------
Q 001313 672 F--VGEIPQSLSKCS-SLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNH---------------------------- 719 (1102)
Q Consensus 672 l--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~---------------------------- 719 (1102)
+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 8 777777666543 111334455554443332 23334444444444442
Q ss_pred ccCC----CcccccCCCcccEEEccCcccccCCCCCC------CC--------------------------ccccEEEcc
Q 001313 720 IEGP----IPLEFCQLRILQILDISDNNISGSLPSCY------DF--------------------------VCIEQVHLS 763 (1102)
Q Consensus 720 l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~------~~--------------------------~~L~~L~l~ 763 (1102)
+++. ++.. ...++|++|++++|.++|.+|..+ .+ .+++.|+++
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 1110 0111 112367777777777776666543 12 235555555
Q ss_pred CcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc--CchhhcCCCCCCEEECcCccCC
Q 001313 764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE--VPIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 764 ~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
+|.+.... ....+++|++|++++|++++..|..+.++++|++|++++|++++. +|..+..+++|++|++++|+++
T Consensus 340 ~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 340 DTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 55553211 114566677777777777766677777777777777777777652 3455667777777777777776
Q ss_pred CCCCcc-cccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313 842 GHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 920 (1102)
Q Consensus 842 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 920 (1102)
+.+|.. +..+ +.|+.|+|++|++++.
T Consensus 417 ~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 417 SHAYDRTCAWA-----------------------------------------------------ESILVLNLSSNMLTGS 443 (562)
T ss_dssp SCCSSCCCCCC-----------------------------------------------------TTCCEEECCSSCCCGG
T ss_pred CccChhhhcCc-----------------------------------------------------ccCCEEECCCCCCCcc
Confidence 644432 2222 2567777777777766
Q ss_pred CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh-hhcCCCCCEEEcccCcCcccCCc
Q 001313 921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+|..+. ++|++|+|++|+|+ .+|..+..+++|+.|||++|+|++ +|.. +..+++|+++++++|++.|.+|.
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 665554 56777777777777 555555577777777777777773 4444 67777777777777777776653
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-38 Score=368.20 Aligned_cols=321 Identities=25% Similarity=0.288 Sum_probs=163.1
Q ss_pred CCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccCeeecCCcccccccCccccccCCcceE
Q 001313 386 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 465 (1102)
Q Consensus 386 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 465 (1102)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+ |..++++.+|+.+++..|.. .+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~------------~~l~- 74 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLD------------RQAH- 74 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHH------------HTCS-
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhhc------------cCCC-
Confidence 46778888888877 677877888888888888888877766 66677777766666665532 1233
Q ss_pred EecCCCccchhhhccccCCCCcccceeeeeccCCCCCCccCccccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEc
Q 001313 466 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 545 (1102)
Q Consensus 466 L~l~~n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L 545 (1102)
.|++++|.+.+ +|. ..++|++|++
T Consensus 75 ---------------------------------------------------~L~l~~~~l~~-lp~----~~~~L~~L~l 98 (454)
T 1jl5_A 75 ---------------------------------------------------ELELNNLGLSS-LPE----LPPHLESLVA 98 (454)
T ss_dssp ---------------------------------------------------EEECTTSCCSC-CCS----CCTTCSEEEC
T ss_pred ---------------------------------------------------EEEecCCcccc-CCC----CcCCCCEEEc
Confidence 33333333332 111 1234555555
Q ss_pred cCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCccccc
Q 001313 546 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 625 (1102)
Q Consensus 546 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 625 (1102)
++|.+++... ..++|++|++++|.+++ +|.. .++|++|++++|++++ +| .|+++++|++|++++|+++
T Consensus 99 ~~n~l~~lp~----~~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~- 166 (454)
T 1jl5_A 99 SCNSLTELPE----LPQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK- 166 (454)
T ss_dssp CSSCCSSCCC----CCTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-
T ss_pred cCCcCCcccc----ccCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-
Confidence 5555554221 13566677777776662 3321 2567777777777775 55 4777777777777777776
Q ss_pred ccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCcccc
Q 001313 626 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 705 (1102)
Q Consensus 626 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 705 (1102)
.+|.. ..+|++|++++|++++. | .+.++++|++|++++|.+++ +|... ++|++|++++|.++ .+|. ++
T Consensus 167 ~lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~ 234 (454)
T 1jl5_A 167 KLPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQ 234 (454)
T ss_dssp CCCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CT
T ss_pred ccCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cC
Confidence 35542 24666666666666653 2 45666666666666666654 33221 35666666666665 4443 55
Q ss_pred CCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEE
Q 001313 706 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 785 (1102)
Q Consensus 706 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L 785 (1102)
.+++|++|++++|++++ +|.. .++|+.|++++|++++ +|. . +++|++|
T Consensus 235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~------------------------l~~-~---~~~L~~L 282 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD------------------------LPE-L---PQSLTFL 282 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC------------------------CCC-C---CTTCCEE
T ss_pred CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc------------------------cCc-c---cCcCCEE
Confidence 56666666666666553 2321 2455555555555543 332 1 1445555
Q ss_pred EccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC-CCCCEEECcCccCCC
Q 001313 786 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL-NQLQLLDLSNNNLHG 842 (1102)
Q Consensus 786 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~ 842 (1102)
++++|++++. |.. .++|++|++++|++++ ++ .+ ++|+.|++++|++++
T Consensus 283 ~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 283 DVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred ECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence 5555555541 111 1355555565555553 11 12 355666666666554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.7e-38 Score=368.79 Aligned_cols=367 Identities=21% Similarity=0.193 Sum_probs=292.3
Q ss_pred CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEE
Q 001313 538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617 (1102)
Q Consensus 538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 617 (1102)
++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56788888888887777777788888888888888887777666555588888888888888888888888888888888
Q ss_pred ccCcccccccchh-HhhcCCCCcEEEccccccCCccccc-ccCCCccCeeeccCccCcccCCCCcCCC--CCCcEEEccC
Q 001313 618 LSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMFSR-NFNLTNLIWLQLEGNHFVGEIPQSLSKC--SSLQGLFLSN 693 (1102)
Q Consensus 618 Ls~n~l~~~ip~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~ 693 (1102)
+++|++++.+|.. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 8888887644432 3456788888888888888777665 6778888888888888887777777665 6778888888
Q ss_pred CcCCCCCCccc--------cCCCCccEEECCCCcccCCCcccccCC---CcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313 694 NSLSGKIPRWL--------GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISDNNISGSLPSCYDFVCIEQVHL 762 (1102)
Q Consensus 694 n~l~~~~p~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l 762 (1102)
|.+.+..+.++ ..+++|++|++++|++++..|..+... ++|+.|++++|...+.....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------- 258 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----------- 258 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-----------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch-----------
Confidence 88875544432 255678888888888877777665543 67788888777665432211
Q ss_pred cCcccccccCcccccC--ccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccC
Q 001313 763 SKNMLHGQLKEGTFFN--CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 840 (1102)
Q Consensus 763 ~~n~l~~~i~~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 840 (1102)
+.+.+..+. .+.. .++|+.|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|.+
T Consensus 259 --~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 259 --TNFKDPDNF-TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp --CSSCCCCTT-TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --hhhccCccc-ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 111111111 3333 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC
Q 001313 841 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 920 (1102)
Q Consensus 841 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 920 (1102)
++..|..|.+++ .|+.|+|++|++++.
T Consensus 336 ~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 336 GSIDSRMFENLD-----------------------------------------------------KLEVLDLSYNHIRAL 362 (455)
T ss_dssp CEECGGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEE
T ss_pred CCcChhHhcCcc-----------------------------------------------------cCCEEECCCCccccc
Confidence 888887776654 689999999999999
Q ss_pred CcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCch
Q 001313 921 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 971 (1102)
Q Consensus 921 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 971 (1102)
.|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++.+|.
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999998888899999999999999999998873
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.4e-38 Score=378.35 Aligned_cols=414 Identities=23% Similarity=0.253 Sum_probs=327.4
Q ss_pred cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313 536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 615 (1102)
Q Consensus 536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 615 (1102)
.+...+.+++++|.+++... .+ .+++++|++++|.+++..|..+. .+++|++|++++|++++..|.+|.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPK-DL--PPRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCSCCT-TS--CTTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCccCCC-CC--CCCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 45556899999999997433 22 38999999999999954444554 4999999999999999999999999999999
Q ss_pred EEccCcccccccchhHhhcCCCCcEEEccccccCCc-ccccccCCCccCeeeccCccCcccCCCCcCCCCCC--cEEEcc
Q 001313 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH-MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL--QGLFLS 692 (1102)
Q Consensus 616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~ 692 (1102)
|++++|+++ .+|.. .+++|++|++++|++++. .|..+.++++|++|++++|.+++. .+..+++| ++|+++
T Consensus 105 L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 999999998 88876 699999999999999985 468899999999999999999853 45566666 999999
Q ss_pred CCcC--CCCCCccccCCC-CccEEECCCCcccCCCcc-cccCCCcccEEEccCccc------------------------
Q 001313 693 NNSL--SGKIPRWLGNLT-VLRHIIMPKNHIEGPIPL-EFCQLRILQILDISDNNI------------------------ 744 (1102)
Q Consensus 693 ~n~l--~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l------------------------ 744 (1102)
+|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9999 888888887765 222568889988876554 466778888888888741
Q ss_pred ----cc----CCCCCCCCccccEEEccCcccccccCcccc----cCcc--------------------------CccEEE
Q 001313 745 ----SG----SLPSCYDFVCIEQVHLSKNMLHGQLKEGTF----FNCL--------------------------TLMILD 786 (1102)
Q Consensus 745 ----~~----~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~----~~~~--------------------------~L~~L~ 786 (1102)
++ .++......+|++|++++|.+.|.+|...| .+++ +|+.|+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 10 001111234899999999999998988332 3333 355666
Q ss_pred ccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC--CcccccccccccccCCCCCC
Q 001313 787 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI--PSCFDNTTLHERYNNGSSLQ 864 (1102)
Q Consensus 787 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~ 864 (1102)
+++|.+.... ....+++|++|++++|++++.+|..+..+++|+.|++++|++++.. |..+.+++
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~------------ 403 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS------------ 403 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT------------
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC------------
Confidence 6666554221 1267788888888888888888888888888888888888887632 34444333
Q ss_pred CccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcc-cccCCCcCCEEECCCCCCCC
Q 001313 865 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAG 943 (1102)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~-~~~~l~~L~~L~Ls~N~l~~ 943 (1102)
.|+.|+|++|++++.+|. .+..+++|++|+|++|++++
T Consensus 404 -----------------------------------------~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 404 -----------------------------------------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp -----------------------------------------TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred -----------------------------------------CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 689999999999986665 48899999999999999998
Q ss_pred CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcc-ccccCCCCccccCCCCCCCCCCC
Q 001313 944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER-AAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
.+|..+. ++|+.|||++|+++ .+|..+..+++|++|++++|++++ +|.. +..+..+..+++.+||+.|+|+.
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 8887765 78999999999999 788888899999999999999995 5553 67788888899999999998753
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.7e-37 Score=357.14 Aligned_cols=377 Identities=24% Similarity=0.292 Sum_probs=257.1
Q ss_pred CCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCc-------------CEEEccCCcCCCCC
Q 001313 512 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL-------------RLLDVSKNNFQGHI 578 (1102)
Q Consensus 512 ~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L-------------~~L~ls~n~l~~~i 578 (1102)
.+.|+.+++++|.+ +.+|..+ +++++|++|++++|.+.+..+..+..+.+| ++|++++|.++ .+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 45778888888888 7777764 678888888888888887777777777664 88888888887 45
Q ss_pred CchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccC
Q 001313 579 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN 658 (1102)
Q Consensus 579 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 658 (1102)
|.. .++|++|++++|.+++ +|.. +++|++|++++|+++ .+|.. .++|++|++++|++++ +| .+.+
T Consensus 87 p~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 87 PEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 541 4788889999888886 5643 378888899988887 45532 2688888998888887 44 5888
Q ss_pred CCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEE
Q 001313 659 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 738 (1102)
Q Consensus 659 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 738 (1102)
+++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|++|++++|++++ +|.. .++|+.|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 8888899998888885 55433 488888998888885 56 58888888899998888875 4432 25788888
Q ss_pred ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccc
Q 001313 739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 818 (1102)
Q Consensus 739 ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 818 (1102)
+++|.++ .+|....+++|+.|++++|++.+ +|. . +++|+.|++++|++++ +|.. .++|++|++++|++++
T Consensus 222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~-~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD-L---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS-C---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc-c---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 8888887 66766677888888888888875 554 2 3688889999998886 5543 3788889999998886
Q ss_pred cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313 819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898 (1102)
Q Consensus 819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1102)
. |.. .++|+.|++++|++++. |
T Consensus 292 l-~~~---~~~L~~L~l~~N~l~~i-~----------------------------------------------------- 313 (454)
T 1jl5_A 292 L-SEL---PPNLYYLNASSNEIRSL-C----------------------------------------------------- 313 (454)
T ss_dssp E-SCC---CTTCCEEECCSSCCSEE-C-----------------------------------------------------
T ss_pred c-cCc---CCcCCEEECcCCcCCcc-c-----------------------------------------------------
Confidence 2 211 26788889988887641 1
Q ss_pred ccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc--cCchhhhcC
Q 001313 899 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW--KIPYQLVEL 976 (1102)
Q Consensus 899 ~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l 976 (1102)
..++.|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|++||+++|++++ .+|.++..+
T Consensus 314 ---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 314 ---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 112368899999999996 6664 5789999999999994 666 47899999999999998 788888887
Q ss_pred -------------CCCCEEEcccCcCcc--cCCc
Q 001313 977 -------------NTLAVFSVAYNNLSG--KIPE 995 (1102)
Q Consensus 977 -------------~~L~~l~ls~N~l~~--~~p~ 995 (1102)
++|++|++++|++++ .+|.
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ECCC------------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 889999999999998 7776
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-36 Score=353.02 Aligned_cols=323 Identities=22% Similarity=0.240 Sum_probs=241.9
Q ss_pred CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644 (1102)
Q Consensus 565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 644 (1102)
+.++.+++.++ .+|..+ .++++.|++++|++++..+..|.++++|++|+|++|++++..|. .+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECC
Confidence 57888888887 778765 46888999999999888888888899999999999888843344 44578888888888
Q ss_pred ccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCC
Q 001313 645 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 724 (1102)
Q Consensus 645 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 724 (1102)
+|+++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888777777777888888888888887777777777888888888888777777777777777777777777777666
Q ss_pred cccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCC
Q 001313 725 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 804 (1102)
Q Consensus 725 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 804 (1102)
+..+..+++|+.|++++|.+.+ ++...|..+++|+.|++++|...+.+|.......
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINA------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCE------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcE------------------------eChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 6667777777777777766652 2333677778888888888877777777666666
Q ss_pred CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884 (1102)
Q Consensus 805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1102)
+|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|.++.
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------- 272 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-------------------------------- 272 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence 888888888888755556777788888888888877766655554433
Q ss_pred cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313 885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964 (1102)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 964 (1102)
.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.
T Consensus 273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 56777777777777777777777777777777777777666677777777777777777
Q ss_pred CcccC
Q 001313 965 LSWKI 969 (1102)
Q Consensus 965 l~~~~ 969 (1102)
+.+..
T Consensus 332 l~c~c 336 (477)
T 2id5_A 332 LACDC 336 (477)
T ss_dssp EECSG
T ss_pred ccCcc
Confidence 76543
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.1e-36 Score=331.84 Aligned_cols=296 Identities=28% Similarity=0.406 Sum_probs=181.3
Q ss_pred ccccHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCcC--cCceEecCCC--CcEEEEEcCCCCCCcccccccccCCCC
Q 001313 25 EGCLNHERFALLQLKLFFIDPYNYLLDWVDDEGATDCCQ--WERVSCNNTM--GRVVVLDLSQTHRGEYWYLNASLFTPF 100 (1102)
Q Consensus 25 ~~c~~~~~~all~~k~~~~~~~~~l~~w~~~~~~~~cc~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~ 100 (1102)
+.|.++|++||++||+++.||. .+++|.. + +|||. |.||+|+..+ ++|+.|+|+++.+.+...+ +..|+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~--~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~l 75 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWLP-T--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLANL 75 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCCT-T--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGGC
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCCC-C--CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhCC
Confidence 3699999999999999998886 7999965 3 78998 9999998655 8999999998866552111 2345566
Q ss_pred CCCCEEeCCC-CCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccCCC
Q 001313 101 QQLESLDLRD-NDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSLRD 179 (1102)
Q Consensus 101 ~~L~~L~Ls~-~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 179 (1102)
++|++|++++ |.+.+..+ ..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+ +
T Consensus 76 ~~L~~L~L~~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p-------- 142 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-P-------- 142 (313)
T ss_dssp TTCSEEEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-C--------
T ss_pred CCCCeeeCCCCCcccccCC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-C--------
Confidence 6666666663 55554433 23455555555555555555555555555555555555555555432 2
Q ss_pred CcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccC-CCcEEEccCCcCCCCCchhhccCCCCCc
Q 001313 180 LEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLS-SLRSLLLYDNRLEGSIDVKEFDSLSNLE 258 (1102)
Q Consensus 180 L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 258 (1102)
..+.++++|++|++++|.+++.+|..++.++ +|++|++++|.+.+.++. .+..++ |+
T Consensus 143 --------------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~ 200 (313)
T 1ogq_A 143 --------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LA 200 (313)
T ss_dssp --------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CS
T ss_pred --------------------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-cc
Confidence 3444445555555555555444445555554 555555555555433332 444444 55
Q ss_pred EEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccccccccccccccccee
Q 001313 259 ELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQGFPHFKSLKEL 338 (1102)
Q Consensus 259 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~l~~L~~L 338 (1102)
+|++++|.+++.. +..+..
T Consensus 201 ~L~Ls~N~l~~~~---------------------------~~~~~~---------------------------------- 219 (313)
T 1ogq_A 201 FVDLSRNMLEGDA---------------------------SVLFGS---------------------------------- 219 (313)
T ss_dssp EEECCSSEEEECC---------------------------GGGCCT----------------------------------
T ss_pred EEECcCCcccCcC---------------------------CHHHhc----------------------------------
Confidence 5555555443211 111222
Q ss_pred ecccchhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEc
Q 001313 339 YMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 418 (1102)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 418 (1102)
+++|++|++++|.+++..+ .+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 220 --------------------l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 220 --------------------DKNTQKIHLAKNSLAFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp --------------------TSCCSEEECCSSEECCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred --------------------CCCCCEEECCCCceeeecC----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 2233333333333332222 1344667788888888887778888888888888888
Q ss_pred CCCccccccCCcccccCCccCeeecCCcc
Q 001313 419 SSNQLIGSISSSPLIHLTSIEDLILSDNH 447 (1102)
Q Consensus 419 s~n~l~~~i~~~~l~~l~~L~~L~L~~n~ 447 (1102)
++|++++.++. . .++++|+.+++++|+
T Consensus 276 s~N~l~~~ip~-~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQ-G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCC-S-TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCC-C-ccccccChHHhcCCC
Confidence 88888877743 2 778888888888886
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-34 Score=338.04 Aligned_cols=347 Identities=26% Similarity=0.317 Sum_probs=223.3
Q ss_pred cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313 536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 615 (1102)
Q Consensus 536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 615 (1102)
.+++++.|++.++.+.... .+..+++|++|++++|.+++ +|. +. .+++|++|++++|.+.+..+ +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-hh-ccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 3456666666666655422 24455556666666665552 232 22 25555666665555554333 555555555
Q ss_pred EEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCc
Q 001313 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695 (1102)
Q Consensus 616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 695 (1102)
|++++|+++ .++. +..+++|++|++++|.+++.. .+..+++|++|+++ |.+.+.. .+..+++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 555555555 3332 334555555555555554432 24445555555553 2222211 14444555555555554
Q ss_pred CCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313 696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775 (1102)
Q Consensus 696 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~ 775 (1102)
++ +. ..+..+++|+.|++++|.+.+..| ...+++|+.|++++|++.+ ++ .
T Consensus 189 l~------------------------~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~ 238 (466)
T 1o6v_A 189 VS------------------------DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--T 238 (466)
T ss_dssp CC------------------------CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--G
T ss_pred CC------------------------CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--h
Confidence 44 32 124444455555555554444333 2234455555555555543 22 5
Q ss_pred ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 855 (1102)
+..+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l---- 308 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL---- 308 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC----
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC----
Confidence 7788899999999999987655 8888999999999999986554 8889999999999999886544 3322
Q ss_pred cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935 (1102)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 935 (1102)
+.|+.|+|++|++++..| +..+++|+.|+
T Consensus 309 -------------------------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 309 -------------------------------------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp -------------------------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred -------------------------------------------------CCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 268899999999998766 78899999999
Q ss_pred CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313 936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
+++|.+++. ..++++++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 999999976 478899999999999999998877 88899999999999999873
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-35 Score=339.75 Aligned_cols=354 Identities=18% Similarity=0.145 Sum_probs=208.1
Q ss_pred cCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcE
Q 001313 536 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 615 (1102)
Q Consensus 536 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 615 (1102)
++++|++|++++|.+++.. .+..+++|++|++++|.+++ +| +. .+++|++|++++|.+++. + ++++++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 3444444444444444431 34444555555555555542 22 22 245555555555555542 2 455555555
Q ss_pred EEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCc
Q 001313 616 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 695 (1102)
Q Consensus 616 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 695 (1102)
|++++|++++ +| +..+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|+
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 5555555552 33 23455555555555555553 1445555555555555433333 34555556666666665
Q ss_pred CCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313 696 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775 (1102)
Q Consensus 696 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~ 775 (1102)
+++ +| ++.+++|+.|++++|++++. .+..+++|+.|++++|++++ +| ...+++|+.|++++|++++. |
T Consensus 182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~-~--- 249 (457)
T 3bz5_A 182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTEL-D--- 249 (457)
T ss_dssp CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCC-C---
T ss_pred cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCc-C---
Confidence 554 33 55555566666666655543 25555566666666666555 33 33445555555555555542 2
Q ss_pred ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 855 (1102)
+..+++|+.|++++| +|+.|++++|++.+.+| +..+++|+.|++++|+..+.+|.....++.
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~-- 311 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE-- 311 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC--
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE--
Confidence 234455666666554 34556677777666666 456677777777777776666643222210
Q ss_pred cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935 (1102)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 935 (1102)
+++. -.+.|+.|+|++|++++. + ++.+++|+.|+
T Consensus 312 --------------------------------L~l~-----------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 312 --------------------------------LDLS-----------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp --------------------------------CCCT-----------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred --------------------------------echh-----------hcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 0000 012689999999999984 3 89999999999
Q ss_pred CCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcc
Q 001313 936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 996 (1102)
Q Consensus 936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 996 (1102)
+++|+|++ ++.|+.|++++|+++|. ..+..|..+++++|+++|.+|..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 99999996 24677789999999987 24566788899999999999973
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-34 Score=336.32 Aligned_cols=348 Identities=26% Similarity=0.344 Sum_probs=288.7
Q ss_pred CCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcE
Q 001313 512 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 591 (1102)
Q Consensus 512 ~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~ 591 (1102)
+.+++.|++.++.+.. +|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +. .+++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LA-NLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GT-TCTTCCE
T ss_pred hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hc-CCCCCCE
Confidence 5789999999998865 554 5689999999999999998765 88999999999999999854 43 44 4899999
Q ss_pred EEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc
Q 001313 592 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 671 (1102)
Q Consensus 592 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 671 (1102)
|++++|.+++..+ +.++++|++|++++|+++ .++. +..+++|+.|+++ |.+.+..+ +.++++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCc
Confidence 9999999997543 899999999999999998 5664 4689999999997 55655433 7899999999999999
Q ss_pred CcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCC
Q 001313 672 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC 751 (1102)
Q Consensus 672 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 751 (1102)
+.+. ..+..+++|++|++++|.+.+..| ++.+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~---- 258 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL---- 258 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC----
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc----
Confidence 8854 358889999999999999986655 77889999999999998754 3577888888888888877632
Q ss_pred CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCC
Q 001313 752 YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 831 (1102)
Q Consensus 752 ~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 831 (1102)
+ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+
T Consensus 259 --------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 259 --------------------A--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp --------------------G--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred --------------------h--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 1 25667888888888888886544 7888899999999999886554 78899999
Q ss_pred EEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEE
Q 001313 832 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD 911 (1102)
Q Consensus 832 ~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 911 (1102)
.|++++|++++..| +..++ .|+.|+
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~-----------------------------------------------------~L~~L~ 337 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLT-----------------------------------------------------KLQRLF 337 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCT-----------------------------------------------------TCCEEE
T ss_pred EEECcCCcCCCchh--hccCc-----------------------------------------------------cCCEeE
Confidence 99999999887655 33222 688999
Q ss_pred CCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCch
Q 001313 912 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY 971 (1102)
Q Consensus 912 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 971 (1102)
+++|++++. +.+..+++|+.|++++|++++.+| +..+++|+.|++++|++++ +|.
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 999999875 478999999999999999998887 8999999999999999996 343
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=342.30 Aligned_cols=345 Identities=18% Similarity=0.142 Sum_probs=219.0
Q ss_pred cEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccC
Q 001313 590 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669 (1102)
Q Consensus 590 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 669 (1102)
+.++.++++++ .+|..+. +.+++|++++|+++ .++...+..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45566666665 3454442 46667777777766 34433445666777777777777666666666777777777777
Q ss_pred ccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCC
Q 001313 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 749 (1102)
Q Consensus 670 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 749 (1102)
|.+++..+..|..+++|++|++++|++.+..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 77665555566667777777777777766666666667777777777777666666666666666666666666542
Q ss_pred CCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCC
Q 001313 750 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 829 (1102)
Q Consensus 750 ~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 829 (1102)
++...|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+
T Consensus 167 ---------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 167 ---------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp ---------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ---------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 33335666666777777777776666666666777777777776666666666555566
Q ss_pred CCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCce
Q 001313 830 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 909 (1102)
Q Consensus 830 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 909 (1102)
|+.|++++|.+++..+..|..+. .|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLV-----------------------------------------------------YLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCT-----------------------------------------------------TCCE
T ss_pred ccEEECcCCcccccCHHHhcCcc-----------------------------------------------------ccCe
Confidence 77777777766644333343332 4666
Q ss_pred EECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcC
Q 001313 910 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 989 (1102)
Q Consensus 910 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 989 (1102)
|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 77777777666666666677777777777777766666777777777777777777766555666666777777777777
Q ss_pred cccCCcccccc-CCCCccccCCCCCCCCC
Q 001313 990 SGKIPERAAQF-ATFNESSYEGNPFLCGP 1017 (1102)
Q Consensus 990 ~~~~p~~~~~~-~~~~~~~~~gN~~lC~~ 1017 (1102)
.|.++. .++ .......+.++...|..
T Consensus 333 ~c~c~~--~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 333 ACDCRL--LWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp ECSGGG--HHHHTTTTSSCCTTCCCBEEE
T ss_pred cCccch--HhHHhhhhccccCccCceeCC
Confidence 665543 121 22222344555556643
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.8e-34 Score=332.92 Aligned_cols=271 Identities=20% Similarity=0.151 Sum_probs=162.1
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665 (1102)
Q Consensus 586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 665 (1102)
+++|++|++++|++++. .++.+++|++|++++|+..+.++ +..+++|++|++++|++++.. +..+++|++|
T Consensus 126 l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L 196 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRL 196 (457)
T ss_dssp CTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEE
T ss_pred CCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEE
Confidence 44444444444444432 14444455555555553333332 223455555555555554431 4455556666
Q ss_pred eccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccc
Q 001313 666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745 (1102)
Q Consensus 666 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 745 (1102)
++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++.. +..+++|+.|++++|+
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-- 265 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-- 265 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--
Confidence 6666665543 25556666666666666664 44 566666666666666666543 3445566666666653
Q ss_pred cCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313 746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825 (1102)
Q Consensus 746 ~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 825 (1102)
|+.+++++|.+.+.+| +.++++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 266 -----------L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~----------- 317 (457)
T 3bz5_A 266 -----------LLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN----------- 317 (457)
T ss_dssp -----------CSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred -----------CCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence 3456666676666665 35667788888888877766664 3345555555544
Q ss_pred CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313 826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905 (1102)
Q Consensus 826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1102)
++|+.|++++|++++. | +++++
T Consensus 318 --~~L~~L~L~~N~l~~l-~--l~~l~----------------------------------------------------- 339 (457)
T 3bz5_A 318 --PKLVYLYLNNTELTEL-D--VSHNT----------------------------------------------------- 339 (457)
T ss_dssp --TTCCEEECTTCCCSCC-C--CTTCT-----------------------------------------------------
T ss_pred --ccCCEEECCCCccccc-c--cccCC-----------------------------------------------------
Confidence 5777888888887763 2 33322
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 975 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 975 (1102)
.|+.||+++|++++ ++.|..|++++|.++|. +.+..|+.+|+++|+++|.+|..+..
T Consensus 340 ~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 340 KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred cCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 57778888888875 24566677888888876 34566778888888888888876543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-34 Score=326.34 Aligned_cols=333 Identities=22% Similarity=0.189 Sum_probs=208.2
Q ss_pred CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 691 (1102)
++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444443 344444444444444444444444444444444444444444444444444444444555555555
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i 771 (1102)
++|+++...+..|..+++|++|++++|.+++..|..+..+++|+.|++++|++++. ....+++|+.+++++|.+.+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~-- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST-- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE--
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc--
Confidence 55544432222334445555555555555444444444555555555555554432 11223455555555555442
Q ss_pred CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 851 (1102)
Q Consensus 772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 851 (1102)
+...++|+.|++++|.++.. |.. ..++|+.|++++|++++. ..+..+++|+.|++++|.+++..|..|..+
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 23335678888888887754 222 246788888888888753 467788888888888888887777766554
Q ss_pred cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313 852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 931 (1102)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L 931 (1102)
+ .|+.|+|++|++++ +|..+..+++|
T Consensus 272 ~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 272 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp S-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred c-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCCCC
Confidence 4 67888888888875 56677788999
Q ss_pred CEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCC
Q 001313 932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 1011 (1102)
Q Consensus 932 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN 1011 (1102)
++|+|++|+++ .+|..+..+++|+.|+|++|+++.. | +..+++|+.|++++|++.+.... ..+..+....+.++
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA 371 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccccc
Confidence 99999999998 5677788899999999999999854 3 67788999999999999886443 55667777778888
Q ss_pred CCCCCCC
Q 001313 1012 PFLCGPP 1018 (1102)
Q Consensus 1012 ~~lC~~~ 1018 (1102)
+..|.++
T Consensus 372 ~~~c~~~ 378 (390)
T 3o6n_A 372 DQHCKID 378 (390)
T ss_dssp CSCCCTT
T ss_pred Cceeccc
Confidence 8888764
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-34 Score=346.84 Aligned_cols=333 Identities=22% Similarity=0.183 Sum_probs=216.2
Q ss_pred CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 691 (1102)
+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|+.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3444444444443 344444444444444444444444444444444445555555555544444444445555555555
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i 771 (1102)
++|.+++..+..|+++++|++|++++|.+++..|..|..+++|+.|++++|.+++.. ...+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc--
Confidence 555554333333444555555555555555444444555555555555555544321 1223455555555555542
Q ss_pred CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 851 (1102)
Q Consensus 772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 851 (1102)
+...++|+.|++++|.++...+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 233456888888888887544332 2578888888888886 3678888888888888888888888777655
Q ss_pred cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313 852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 931 (1102)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L 931 (1102)
+ .|+.|+|++|++++ +|..+..+++|
T Consensus 278 ~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 278 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp S-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred c-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCCCC
Confidence 4 68889999998886 57777889999
Q ss_pred CEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCC
Q 001313 932 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 1011 (1102)
Q Consensus 932 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN 1011 (1102)
+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|+++|..+. ..+..+....+.++
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~ 377 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA 377 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence 99999999999 6788889999999999999999865 3 66788999999999999987543 56777777788899
Q ss_pred CCCCCCC
Q 001313 1012 PFLCGPP 1018 (1102)
Q Consensus 1012 ~~lC~~~ 1018 (1102)
+..|+.+
T Consensus 378 ~~~C~~~ 384 (597)
T 3oja_B 378 DQHCKID 384 (597)
T ss_dssp CCCCCTT
T ss_pred cccCCcc
Confidence 9999864
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.2e-34 Score=315.71 Aligned_cols=258 Identities=33% Similarity=0.533 Sum_probs=216.7
Q ss_pred CCCcEEEccCCcCCC--CCCccccCCCCccEEECCC-CcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEE
Q 001313 684 SSLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 760 (1102)
Q Consensus 684 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L 760 (1102)
.+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|.++++|++|++++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 356677777777766 6677777777777777774 67777777777777777777777766653
Q ss_pred EccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC-CCCEEECcCcc
Q 001313 761 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNN 839 (1102)
Q Consensus 761 ~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~ 839 (1102)
.+|. .|.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|+
T Consensus 116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 3444 677788888888888888888888888888888899988888888888888887 88999999999
Q ss_pred CCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCC
Q 001313 840 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 919 (1102)
Q Consensus 840 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 919 (1102)
+++.+|..+..+. |+.|+|++|++++
T Consensus 186 l~~~~~~~~~~l~------------------------------------------------------L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEE
T ss_pred eeccCChHHhCCc------------------------------------------------------ccEEECcCCcccC
Confidence 8888887765432 7889999999999
Q ss_pred CCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313 920 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 999 (1102)
Q Consensus 920 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 999 (1102)
.+|..|..+++|++|+|++|.+++.+|. +..+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|. ..+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence 9999999999999999999999988777 88999999999999999999999999999999999999999999999 488
Q ss_pred cCCCCccccCCCCCCCCCCCCC
Q 001313 1000 FATFNESSYEGNPFLCGPPLPI 1021 (1102)
Q Consensus 1000 ~~~~~~~~~~gN~~lC~~~~~~ 1021 (1102)
+..+....+.+||++||.|+..
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~ 311 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSC
T ss_pred ccccChHHhcCCCCccCCCCCC
Confidence 9999999999999999988764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.7e-32 Score=309.52 Aligned_cols=314 Identities=22% Similarity=0.247 Sum_probs=223.8
Q ss_pred CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 640 (1102)
Q Consensus 561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 640 (1102)
+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 466777777777776 667666555778888888888877777777777888888888888777 444444456677777
Q ss_pred EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313 641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 720 (1102)
Q Consensus 641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 720 (1102)
|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|++++. .++.+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777655555556666666666666666665566666666666666666666543 134455566666666655
Q ss_pred cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313 721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800 (1102)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 800 (1102)
++ +...++|+.|++++|.+. . +|. ...++|+.|++++|.+++. ..+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~-----------------------~-~~~---~~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSIN-----------------------V-VRG---PVNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCC-----------------------E-EEC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred cc-----cCCCCcceEEECCCCeee-----------------------e-ccc---cccccccEEECCCCCCccc--HHH
Confidence 42 122234555555555443 2 233 1236788899999988864 578
Q ss_pred cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 880 (1102)
Q Consensus 801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1102)
..+++|++|++++|++++..|..+..+++|+.|++++|++++. |..+..+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l----------------------------- 294 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI----------------------------- 294 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCC-----------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCC-----------------------------
Confidence 8889999999999999988888999999999999999988753 3222211
Q ss_pred cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313 881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960 (1102)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 960 (1102)
+.|+.|+|++|+++ .+|..+..+++|++|+|++|.+++. | +..+++|+.|++
T Consensus 295 ------------------------~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 295 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp ------------------------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ------------------------CCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 26899999999998 5788889999999999999999965 3 778899999999
Q ss_pred CCCcCcccCch
Q 001313 961 SYNKLSWKIPY 971 (1102)
Q Consensus 961 s~N~l~~~~p~ 971 (1102)
++|++++.-..
T Consensus 347 ~~N~~~~~~~~ 357 (390)
T 3o6n_A 347 SHNDWDCNSLR 357 (390)
T ss_dssp CSSCEEHHHHH
T ss_pred CCCCccchhHH
Confidence 99999975433
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4e-31 Score=298.68 Aligned_cols=304 Identities=23% Similarity=0.329 Sum_probs=183.2
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665 (1102)
Q Consensus 586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 665 (1102)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++. +..+++|++|++++|.++.. ..+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4455555555555542 22 2555555555555555555 3333 33455555555555555443 234555666666
Q ss_pred eccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccc
Q 001313 666 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 745 (1102)
Q Consensus 666 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 745 (1102)
++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 666666553322 5566666666666665443333 25666666666666666654333 556666666666666554
Q ss_pred cCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc
Q 001313 746 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 825 (1102)
Q Consensus 746 ~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 825 (1102)
+ ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 D------------------------IS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp C------------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred c------------------------cc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2 22 14555666666666666665433 5666677777777777764433 66
Q ss_pred CCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313 826 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905 (1102)
Q Consensus 826 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1102)
.+++|++|++++|.+++. + .+..+ +
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~-~~~~l-----------------------------------------------------~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-N-AVKDL-----------------------------------------------------T 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-G-GGTTC-----------------------------------------------------T
T ss_pred cCCCCCEEECCCCccCCC-h-hHhcC-----------------------------------------------------C
Confidence 677777777777766542 1 12111 2
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|++++|++++. +.+..+++|+.|++++|.+++..|..|+.+++|+.|++++|++++..| +..+++|++|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 567777777777654 357777888888888888887778888888888888888888886655 7778888888888
Q ss_pred cCcCc
Q 001313 986 YNNLS 990 (1102)
Q Consensus 986 ~N~l~ 990 (1102)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.5e-31 Score=322.17 Aligned_cols=315 Identities=22% Similarity=0.252 Sum_probs=230.6
Q ss_pred CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 640 (1102)
Q Consensus 561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 640 (1102)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|+|++|.++ .+|...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 456677777777776 667766666788888888888888777778888888888888888887 455555556777777
Q ss_pred EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313 641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 720 (1102)
Q Consensus 641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 720 (1102)
|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++.. ++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 777777777666666666777777777777776666666666777777777777666432 34455666666666655
Q ss_pred cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313 721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800 (1102)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 800 (1102)
++ +...++|+.|++++|.+. . ++. .+ .++|+.|++++|.+++ +..+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~-----------------------~-~~~-~~--~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSIN-----------------------V-VRG-PV--NVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCC-----------------------E-EEC-SC--CSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCccc-----------------------c-ccc-cc--CCCCCEEECCCCCCCC--Chhh
Confidence 43 223345555555555554 2 222 11 2578888999998886 4678
Q ss_pred cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 880 (1102)
Q Consensus 801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1102)
..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+++. |..+..+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l----------------------------- 300 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI----------------------------- 300 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCC-----------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccC-----------------------------
Confidence 8889999999999999988899999999999999999988763 3322222
Q ss_pred cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313 881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960 (1102)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 960 (1102)
+.|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++.. +..+++|+.|+|
T Consensus 301 ------------------------~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 301 ------------------------PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp ------------------------TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred ------------------------CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 26899999999998 68888999999999999999999663 677889999999
Q ss_pred CCCcCcccCchh
Q 001313 961 SYNKLSWKIPYQ 972 (1102)
Q Consensus 961 s~N~l~~~~p~~ 972 (1102)
++|.+++..+..
T Consensus 353 ~~N~~~~~~~~~ 364 (597)
T 3oja_B 353 SHNDWDCNSLRA 364 (597)
T ss_dssp CSSCEEHHHHHH
T ss_pred eCCCCCChhHHH
Confidence 999999764433
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-30 Score=294.92 Aligned_cols=304 Identities=26% Similarity=0.352 Sum_probs=217.7
Q ss_pred CCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE
Q 001313 561 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 640 (1102)
Q Consensus 561 ~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 640 (1102)
+++|+.|++++|.+. .+|. +. .+++|++|++++|.+++..+ +..+++|++|++++|+++ .+|. +..+++|++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred cccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence 445555555555554 3332 22 26667777777776664332 667777777777777776 4442 346777777
Q ss_pred EEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcc
Q 001313 641 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 720 (1102)
Q Consensus 641 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 720 (1102)
|++++|.+++..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 7777777766544 6677788888888876554433 47788888888888888874433 77888888888888888
Q ss_pred cCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313 721 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800 (1102)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 800 (1102)
++..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred ccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--h
Confidence 75443 77788888888888877632 1 25566778888888888775443 7
Q ss_pred cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCc
Q 001313 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 880 (1102)
Q Consensus 801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1102)
..+++|++|++++|++++. ..+..+++|+.|++++|++++. | .+..+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l----------------------------- 286 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNL----------------------------- 286 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGC-----------------------------
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCC-----------------------------
Confidence 7788888888888888753 4577888888888888888753 2 22222
Q ss_pred cccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeC
Q 001313 881 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 960 (1102)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 960 (1102)
+.|+.|++++|++++..|..|+.+++|++|+|++|.+++..| +..+++|+.||+
T Consensus 287 ------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 287 ------------------------SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp ------------------------TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred ------------------------CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 268889999999988888889999999999999999998777 888999999999
Q ss_pred CCCcCc
Q 001313 961 SYNKLS 966 (1102)
Q Consensus 961 s~N~l~ 966 (1102)
++|+|+
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 999886
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=283.86 Aligned_cols=291 Identities=23% Similarity=0.281 Sum_probs=202.0
Q ss_pred CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 691 (1102)
+++.++++++.++ .+|..+ .+.++.|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3555555555555 455433 245666666666666655556666777777777777777666777777777777777
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i 771 (1102)
++|+++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+... +..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE 163 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence 777776 4554443 5777777877777776666777777777777777776421 112
Q ss_pred CcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 851 (1102)
Q Consensus 772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 851 (1102)
+. .|.++++|++|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..+
T Consensus 164 ~~-~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 164 NG-AFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp TT-GGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred hh-hccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 22 66677777777777777774 444433 678888888888877777778888888888888888777666555544
Q ss_pred cccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcC
Q 001313 852 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI 931 (1102)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L 931 (1102)
+ .|+.|+|++|+++ .+|..+..+++|
T Consensus 240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence 3 5777888888887 677788888888
Q ss_pred CEEECCCCCCCCCCcccccCC------CcCCEEeCCCCcCcc--cCchhhhcCCCCCEEEcccCc
Q 001313 932 QTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLSW--KIPYQLVELNTLAVFSVAYNN 988 (1102)
Q Consensus 932 ~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~ls~N~ 988 (1102)
++|+|++|+|++..+..|... ..|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888777777543 678888888888863 556778888888888888874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.5e-30 Score=285.78 Aligned_cols=288 Identities=23% Similarity=0.269 Sum_probs=165.9
Q ss_pred CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 691 (1102)
.++.++++++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555666666555 555443 245666666666666555555666666666666666666665666666666666666
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccccc--CCCCCCCCccccEEEccCccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG--SLPSCYDFVCIEQVHLSKNMLHG 769 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~ 769 (1102)
++|+++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.++. ..|.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------- 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG------------------- 167 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence 666666 4444433 566666676666665555556666667666666666642 2222
Q ss_pred ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849 (1102)
Q Consensus 770 ~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 849 (1102)
.|..+ +|++|++++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+.
T Consensus 168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 33333 45555555555543 333222 4555555555555555555555555555555555555554444443
Q ss_pred cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313 850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 929 (1102)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~ 929 (1102)
.++ .|+.|+|++|+++ .+|..+..++
T Consensus 239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence 332 4555666666665 5566666666
Q ss_pred cCCEEECCCCCCCCCCcccccCC------CcCCEEeCCCCcCc--ccCchhhhcCCCCCEEEcccCc
Q 001313 930 KIQTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLS--WKIPYQLVELNTLAVFSVAYNN 988 (1102)
Q Consensus 930 ~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~l~ls~N~ 988 (1102)
+|++|++++|.+++..+..|... ..|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66666666666666666655543 45667777777666 4556666667777777776663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-29 Score=280.60 Aligned_cols=252 Identities=22% Similarity=0.301 Sum_probs=155.9
Q ss_pred CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEE
Q 001313 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 641 (1102)
Q Consensus 562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 641 (1102)
.+++.++++++.++ .+|..+ .+++++|++++|++++..+..|.++++|++|++++|++++..|..+ ..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence 36777777777776 566544 3567777777777776666667777777777777776663333332 345555555
Q ss_pred EccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc
Q 001313 642 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 721 (1102)
Q Consensus 642 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 721 (1102)
++++|+++. +|..+. ++|++|++++|++++..+..+.++++|+.|++++|.++
T Consensus 106 ~Ls~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 106 YLSKNQLKE-------------------------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ECCSSCCSB-------------------------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCc-------------------------cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 555555442 232222 45566666666665555555566666666666666553
Q ss_pred C--CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcc
Q 001313 722 G--PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799 (1102)
Q Consensus 722 ~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 799 (1102)
. ..+..+..+++|+.|++++|.++. +|.... ++|++|++++|++.+..|. .|..+++|+.|++++|++++..+..
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence 2 455566666666666666666653 222221 4555555555555544344 6777777777777777777766667
Q ss_pred ccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313 800 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849 (1102)
Q Consensus 800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 849 (1102)
+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 777777777777777777 6676777777777777777777765555443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=281.78 Aligned_cols=250 Identities=27% Similarity=0.318 Sum_probs=148.8
Q ss_pred CcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEE
Q 001313 563 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 642 (1102)
Q Consensus 563 ~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 642 (1102)
+++.++++++.++ .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------ 91 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence 4566666666665 555544 245666666666666555555666666666666666555
Q ss_pred ccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCccc-
Q 001313 643 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE- 721 (1102)
Q Consensus 643 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~- 721 (1102)
+..+..+.++++|++|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 92 -------~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 92 -------KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp -------EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred -------ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 333344444455555555555444 2333222 45666666666665444445566666666666666654
Q ss_pred -CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccc
Q 001313 722 -GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 800 (1102)
Q Consensus 722 -~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 800 (1102)
+..+..+..+ +|+.|++++|++++ +|.... ++|++|++++|.+.+..+. .|.++++|+.|++++|++++..+..+
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELE-DLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTT-SSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCcCChhHh
Confidence 2455555555 66666666666654 232221 4555555555555543333 67777777777777777777666677
Q ss_pred cCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313 801 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849 (1102)
Q Consensus 801 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 849 (1102)
..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 77777777777777777 6676777777777777777777765555544
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.2e-33 Score=328.55 Aligned_cols=363 Identities=19% Similarity=0.137 Sum_probs=247.5
Q ss_pred CCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccc----cCCcccCCCCCCcEEEccCcccccccchhHhhcCC-
Q 001313 562 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV- 636 (1102)
Q Consensus 562 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~- 636 (1102)
++|++||+++|+++......++..+++|++|++++|.++. .++..+..+++|++|++++|++++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678888888888744444445558899999999998874 34667788899999999999887655666665666
Q ss_pred ---CCcEEEccccccCC----cccccccCCCccCeeeccCccCcccCCCCc-----CCCCCCcEEEccCCcCCCCC----
Q 001313 637 ---SLRSLALSNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL-----SKCSSLQGLFLSNNSLSGKI---- 700 (1102)
Q Consensus 637 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---- 700 (1102)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 446667777888888888887764333222 22456777777777776532
Q ss_pred CccccCCCCccEEECCCCcccCCCccccc-----CCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccc
Q 001313 701 PRWLGNLTVLRHIIMPKNHIEGPIPLEFC-----QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 775 (1102)
Q Consensus 701 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~ 775 (1102)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++... ..++. .
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-------------------RDLCG-I 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-------------------HHHHH-H
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-------------------HHHHH-H
Confidence 44455566777777777766544333332 24466666666665542100 01344 5
Q ss_pred ccCccCccEEEccCccCcccC-----CccccCCCCCCEEEccCcccccc----CchhhcCCCCCCEEECcCccCCCCCCc
Q 001313 776 FFNCLTLMILDLSYNHLNGNI-----PDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHGHIPS 846 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 846 (1102)
+..+++|++|++++|.+++.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 667778888888888776532 23334577888888888888754 566777788888888888877643332
Q ss_pred ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC----Cc
Q 001313 847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IP 922 (1102)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----ip 922 (1102)
.+...- ....+.|+.|+|++|.+++. +|
T Consensus 303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence 222110 00012578888888888765 46
Q ss_pred ccccCCCcCCEEECCCCCCCCCCcccccC-----CCcCCEEeCCCCcCcc----cCchhhhcCCCCCEEEcccCcCccc
Q 001313 923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSN-----LRNIESLDLSYNKLSW----KIPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++|++++|++++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 66777788888888888888665555543 5688888888888886 7788888888888888888888753
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.7e-32 Score=321.58 Aligned_cols=309 Identities=18% Similarity=0.121 Sum_probs=176.4
Q ss_pred CcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCC----CcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCC-
Q 001313 513 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP----FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS- 587 (1102)
Q Consensus 513 ~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~- 587 (1102)
++++.|+++++.+.......++..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788999998887665555577888999999999987643 2334556788999999998887555555555455
Q ss_pred ---CCcEEEccCCcccc----cCCcccCCCCCCcEEEccCcccccccchhHhh----cCCCCcEEEccccccCCcc----
Q 001313 588 ---RLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM----GCVSLRSLALSNNNLEGHM---- 652 (1102)
Q Consensus 588 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~L~~n~l~~~~---- 652 (1102)
+|++|++++|+++. .++..+..+++|++|++++|++++..+..+.. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68899999988874 45778888888999999888887544443332 2346777777777776533
Q ss_pred cccccCCCccCeeeccCccCcccCCCCcC-----CCCCCcEEEccCCcCCCC----CCccccCCCCccEEECCCCcccCC
Q 001313 653 FSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHIEGP 723 (1102)
Q Consensus 653 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~ 723 (1102)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33334455666666666655433222221 133555555555555432 233344444444444444444322
Q ss_pred C-----cccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCc
Q 001313 724 I-----PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 798 (1102)
Q Consensus 724 ~-----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 798 (1102)
. +..+..+++|++|++++|.+++.-. ..++. .+.++++|++|++++|.+++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence 1 1111123334444444433321000 00333 444555666666666655543322
Q ss_pred ccc-----CCCCCCEEEccCcccccc----CchhhcCCCCCCEEECcCccCC
Q 001313 799 RVD-----GLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 799 ~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
.+. ..++|++|++++|.+++. ++..+..+++|++||+++|.++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 222 124566666666665543 3444455556666666665554
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=277.06 Aligned_cols=210 Identities=24% Similarity=0.225 Sum_probs=149.6
Q ss_pred CCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcE
Q 001313 609 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 688 (1102)
Q Consensus 609 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 688 (1102)
.|+.....+++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3445556677777777 6776543 46777777777777666666677777777777777777666667777777777
Q ss_pred EEccCCcCCCCCCccccCCCCccEEECCCCcccCCCc-ccccCCCcccEEEccCcc-cccCCCCCCCCccccEEEccCcc
Q 001313 689 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNM 766 (1102)
Q Consensus 689 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~~~L~~L~l~~n~ 766 (1102)
|++++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|+ +.
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------------- 163 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--------------------- 163 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc---------------------
Confidence 7777777775444446777777777777777764333 356666777777766663 32
Q ss_pred cccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCc
Q 001313 767 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846 (1102)
Q Consensus 767 l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 846 (1102)
.++...|.++++|++|++++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+++..+.
T Consensus 164 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 164 ---KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp ---EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ---ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 34333778888889999999998888888888889999999999988744444455688899999999888765543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.4e-28 Score=267.51 Aligned_cols=273 Identities=21% Similarity=0.259 Sum_probs=184.0
Q ss_pred eeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC--CcccccCCCcccEEEccC
Q 001313 664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQLRILQILDISD 741 (1102)
Q Consensus 664 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~ 741 (1102)
.++.+++.++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4444554444 3333322 4566666666666633333456666666666666665522 244455566666666666
Q ss_pred cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccC
Q 001313 742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEV 820 (1102)
Q Consensus 742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~ 820 (1102)
|.+. .+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..
T Consensus 88 n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred Cccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 6554 2444 46667777777777777776554 56777777888888888777777
Q ss_pred chhhcCCCCCCEEECcCccCCC-CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1102)
|..+..+++|++|++++|.+++ .+|..+..++
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------------------------------------- 175 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----------------------------------------------- 175 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCc-----------------------------------------------
Confidence 7777778888888888887765 4555554433
Q ss_pred cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC-C
Q 001313 900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-T 978 (1102)
Q Consensus 900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~ 978 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|+.|||++|++++..|..+..++ +
T Consensus 176 ------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 176 ------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp ------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred ------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 577888888888877788888888888888888888888787888888899999999988888888888874 8
Q ss_pred CCEEEcccCcCcccCCcc--ccccCCCCccccCCCCCCCCC
Q 001313 979 LAVFSVAYNNLSGKIPER--AAQFATFNESSYEGNPFLCGP 1017 (1102)
Q Consensus 979 L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~gN~~lC~~ 1017 (1102)
|++|++++|+++|.++.. ..++..........+...|..
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 889999999888765421 122333333344455556654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=272.16 Aligned_cols=281 Identities=19% Similarity=0.193 Sum_probs=223.7
Q ss_pred cCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEE
Q 001313 634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713 (1102)
Q Consensus 634 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 713 (1102)
.|+.....+.+++.++.+.. .+ .++|++|++++|.+++..+..+..+++|++|++++|++++..|..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34555667788888776543 22 2478888888888887666678888888888888888887777778888888888
Q ss_pred ECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCc-ccccCccCccEEEccCc-c
Q 001313 714 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE-GTFFNCLTLMILDLSYN-H 791 (1102)
Q Consensus 714 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~-~~~~~~~~L~~L~Ls~n-~ 791 (1102)
++++|++++..+..|.++++|++|++++|+++ .+|. ..|.++++|++|++++| .
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK------------------------TLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS------------------------SSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc------------------------ccCchhhhccCCCCcEEECCCCcc
Confidence 88888887665556777888888888877765 2343 46888999999999999 5
Q ss_pred CcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhh
Q 001313 792 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV 871 (1102)
Q Consensus 792 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (1102)
+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.++...+..+..+
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------- 221 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-------------------- 221 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT--------------------
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc--------------------
Confidence 777778899999999999999999999999999999999999999999863322222211
Q ss_pred hcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccccc---CCCcCCEEECCCCCCCC----C
Q 001313 872 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG---NLTKIQTLNLSHNNLAG----P 944 (1102)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l~~----~ 944 (1102)
+.|+.|++++|++++..+..+. ..+.++.++|++|.+++ .
T Consensus 222 ---------------------------------~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 222 ---------------------------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ---------------------------------TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred ---------------------------------ccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 2689999999999987665543 46778999999999987 4
Q ss_pred CcccccCCCcCCEEeCCCCcCcccCchh-hhcCCCCCEEEcccCcCcccCCc
Q 001313 945 IPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 945 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+|..+..+++|+.|||++|+++ .+|.. |..+++|++|++++|++.|.+|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 7888999999999999999999 56655 68999999999999999998875
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=262.01 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=105.2
Q ss_pred cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccc-cCchhhcCCCCCCEEECcCccCCCCCCcccccccc
Q 001313 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 853 (1102)
Q Consensus 775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 853 (1102)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..|..|..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 199 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS- 199 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-
Confidence 34445555555555555555555555556666666666666654 3555566666666666666666655555544332
Q ss_pred cccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCE
Q 001313 854 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQT 933 (1102)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 933 (1102)
.|+.|+|++|++++..+..+..+++|++
T Consensus 200 ----------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 200 ----------------------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp ----------------------------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred ----------------------------------------------------CCCEEECCCCccCccChhhccCcccCCE
Confidence 4666666666666666666777788888
Q ss_pred EECCCCCCCCCCcccccCC-CcCCEEeCCCCcCcccCch--hhhcCCCCCEEEcccCcCcccCCcc
Q 001313 934 LNLSHNNLAGPIPSTFSNL-RNIESLDLSYNKLSWKIPY--QLVELNTLAVFSVAYNNLSGKIPER 996 (1102)
Q Consensus 934 L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~l~ls~N~l~~~~p~~ 996 (1102)
|+|++|++++.+|..+..+ ++|+.|+|++|.+++..+. ...-+...+.+.+..+.+.|..|..
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 8888888888888888877 4788888888888764321 1111223334455667777777763
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.8e-27 Score=258.76 Aligned_cols=235 Identities=19% Similarity=0.268 Sum_probs=154.3
Q ss_pred CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEE
Q 001313 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737 (1102)
Q Consensus 658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 737 (1102)
..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3567888888888887 67777888888888888888888 78888888888888888888887 677778888888888
Q ss_pred EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817 (1102)
Q Consensus 738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 817 (1102)
++++|++.+.+|..+.. . .++. .|.++++|++|++++|+++ .+|..++.+++|++|+|++|+++
T Consensus 156 ~L~~n~~~~~~p~~~~~----------~----~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS----------T----DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE----------E----C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh----------c----cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 88887777666653311 0 0111 3444555555555555554 44444555555555555555544
Q ss_pred ccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceee
Q 001313 818 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 897 (1102)
Q Consensus 818 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1102)
+ +|..+..+++
T Consensus 220 ~-l~~~l~~l~~-------------------------------------------------------------------- 230 (328)
T 4fcg_A 220 A-LGPAIHHLPK-------------------------------------------------------------------- 230 (328)
T ss_dssp C-CCGGGGGCTT--------------------------------------------------------------------
T ss_pred c-CchhhccCCC--------------------------------------------------------------------
Confidence 2 3333444444
Q ss_pred eccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313 898 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977 (1102)
Q Consensus 898 ~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 977 (1102)
|+.|+|++|++.+.+|..|+.+++|++|+|++|++.+.+|..|+++++|+.|||++|++.+.+|..+.+++
T Consensus 231 ---------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 231 ---------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp ---------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred ---------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 45555555555555666666666666666666666666666666666677777777666666777676777
Q ss_pred CCCEEEcccCcC
Q 001313 978 TLAVFSVAYNNL 989 (1102)
Q Consensus 978 ~L~~l~ls~N~l 989 (1102)
+|+.+++..|.+
T Consensus 302 ~L~~l~l~~~~~ 313 (328)
T 4fcg_A 302 ANCIILVPPHLQ 313 (328)
T ss_dssp TTCEEECCGGGS
T ss_pred CceEEeCCHHHH
Confidence 776666665543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=267.58 Aligned_cols=251 Identities=22% Similarity=0.225 Sum_probs=206.9
Q ss_pred cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 741 (1102)
Q Consensus 662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 741 (1102)
...++.+++.++ .+|..+. ++++.|++++|++++..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456677776666 4555443 5677777777777776667777777777777777777776667777777777777777
Q ss_pred cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcc-ccccC
Q 001313 742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN-LEGEV 820 (1102)
Q Consensus 742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~ 820 (1102)
|+++ .+|...|.++++|++|++++|++++..+..|..+++|++|+|++|+ +....
T Consensus 122 n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLT------------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCS------------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCC------------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 7665 3555478899999999999999998888899999999999999954 55444
Q ss_pred chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1102)
+..|.++++|++|++++|.++. +|. +..+
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l------------------------------------------------- 206 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLRE-IPN-LTPL------------------------------------------------- 206 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSS-CCC-CTTC-------------------------------------------------
T ss_pred cchhhcccccCeecCCCCcCcc-ccc-cCCC-------------------------------------------------
Confidence 5579999999999999999983 332 2221
Q ss_pred CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 980 (1102)
Q Consensus 901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 980 (1102)
+.|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+
T Consensus 207 ----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 207 ----IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp ----SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ----cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 2689999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred EEEcccCcCcccCC
Q 001313 981 VFSVAYNNLSGKIP 994 (1102)
Q Consensus 981 ~l~ls~N~l~~~~p 994 (1102)
.|++++|++.|.+.
T Consensus 283 ~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 283 RIHLHHNPWNCNCD 296 (440)
T ss_dssp EEECCSSCEECSST
T ss_pred EEEcCCCCccCCCC
Confidence 99999999998765
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3e-26 Score=268.03 Aligned_cols=252 Identities=20% Similarity=0.167 Sum_probs=201.6
Q ss_pred cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 741 (1102)
Q Consensus 662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 741 (1102)
...++.+++.++ .+|..+. +++++|++++|++++..|..|.++++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345666666665 3444433 4667777777777666666666777777777777776666666666666666666666
Q ss_pred cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCc-cccccC
Q 001313 742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN-NLEGEV 820 (1102)
Q Consensus 742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~ 820 (1102)
|+++ .+|...|.++++|++|++++|++++..+..|..+++|+.|++++| .+....
T Consensus 133 n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLT------------------------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCS------------------------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCC------------------------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 6655 355547889999999999999999888889999999999999995 555444
Q ss_pred chhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeecc
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 900 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1102)
+..|..+++|++|+|++|++++. |. +..+
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l------------------------------------------------- 217 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKDM-PN-LTPL------------------------------------------------- 217 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSSC-CC-CTTC-------------------------------------------------
T ss_pred hhhccCCCCCCEEECCCCccccc-cc-cccc-------------------------------------------------
Confidence 55799999999999999999854 32 2221
Q ss_pred CCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCC
Q 001313 901 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 980 (1102)
Q Consensus 901 ~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 980 (1102)
+.|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+
T Consensus 218 ----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 218 ----VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp ----TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ----ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 2689999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred EEEcccCcCcccCCc
Q 001313 981 VFSVAYNNLSGKIPE 995 (1102)
Q Consensus 981 ~l~ls~N~l~~~~p~ 995 (1102)
.|++++|++.|.+..
T Consensus 294 ~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCEECSTTT
T ss_pred EEEccCCCcCCCCCc
Confidence 999999999987653
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.4e-26 Score=266.64 Aligned_cols=250 Identities=23% Similarity=0.232 Sum_probs=220.8
Q ss_pred CCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313 637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716 (1102)
Q Consensus 637 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 716 (1102)
....++.++..++.+. ..+ .+++++|+|++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888887643 333 3689999999999999989999999999999999999998888999999999999999
Q ss_pred CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccC-ccCccc
Q 001313 717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY-NHLNGN 795 (1102)
Q Consensus 717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~-n~l~~~ 795 (1102)
+|++++..+..|..+++|++|++++|+++ .+|...|.++++|+.|++++ |.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE------------------------SIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc------------------------eeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 99999888888999999999999999886 34555788999999999999 455555
Q ss_pred CCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCC
Q 001313 796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 875 (1102)
Q Consensus 796 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1102)
.+..|.++++|++|+|++|++++. | .+..+++|+.|+|++|++++..|..|.+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 242 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----------------------- 242 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence 556799999999999999999954 4 588899999999999999998888877655
Q ss_pred ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313 876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955 (1102)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 955 (1102)
.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|
T Consensus 243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCccc
Q 001313 956 ESLDLSYNKLSWK 968 (1102)
Q Consensus 956 ~~L~Ls~N~l~~~ 968 (1102)
+.|+|++|.+...
T Consensus 293 ~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 293 VELHLHHNPWNCD 305 (452)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEccCCCcCCC
Confidence 9999999998753
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-26 Score=256.11 Aligned_cols=189 Identities=20% Similarity=0.231 Sum_probs=161.3
Q ss_pred cCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEE
Q 001313 634 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 713 (1102)
Q Consensus 634 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 713 (1102)
....++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999999 55677888999999999999999 88999999999999999999999 889999999999999
Q ss_pred ECCCCcccCCCcccccC---------CCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE
Q 001313 714 IMPKNHIEGPIPLEFCQ---------LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784 (1102)
Q Consensus 714 ~l~~n~l~~~~~~~~~~---------l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~ 784 (1102)
++++|++.+.+|..+.. +++|++|++++|++ + .+|. .+.++++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------------~-~lp~-~l~~l~~L~~ 210 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----------------------R-SLPA-SIANLQNLKS 210 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-----------------------C-CCCG-GGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-----------------------C-cchH-hhcCCCCCCE
Confidence 99999998899887654 55555555555554 4 5676 7889999999
Q ss_pred EEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccc
Q 001313 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT 851 (1102)
Q Consensus 785 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 851 (1102)
|++++|++++ +|..+..+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..+.++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 9999999995 67789999999999999999999999888888888888887777766666554433
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.4e-26 Score=264.28 Aligned_cols=249 Identities=27% Similarity=0.240 Sum_probs=217.8
Q ss_pred CCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECC
Q 001313 637 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 716 (1102)
Q Consensus 637 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 716 (1102)
....++.+++.++.+.. .+ .++++.|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45678888888876543 33 3689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCc-cCccc
Q 001313 717 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN 795 (1102)
Q Consensus 717 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n-~l~~~ 795 (1102)
+|++++..+..|..+++|+.|++++|+++ .++...|.++++|++|++++| .+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCccee
Confidence 99999877778999999999999999886 344447888999999999994 55555
Q ss_pred CCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCC
Q 001313 796 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 875 (1102)
Q Consensus 796 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1102)
.+..|.++++|++|+|++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 231 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----------------------- 231 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----------------------
Confidence 5568999999999999999998 555 488899999999999999988888877655
Q ss_pred ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcC
Q 001313 876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 955 (1102)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 955 (1102)
.|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus 232 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 232 ------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 68999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCcc
Q 001313 956 ESLDLSYNKLSW 967 (1102)
Q Consensus 956 ~~L~Ls~N~l~~ 967 (1102)
+.|+|++|.+..
T Consensus 282 ~~L~L~~Np~~C 293 (440)
T 3zyj_A 282 ERIHLHHNPWNC 293 (440)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEcCCCCccC
Confidence 999999999874
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.2e-26 Score=251.56 Aligned_cols=89 Identities=25% Similarity=0.206 Sum_probs=50.9
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 34455555555554444445555566666666666665556666666666666666666665544555556666666666
Q ss_pred cCcCcccCC
Q 001313 986 YNNLSGKIP 994 (1102)
Q Consensus 986 ~N~l~~~~p 994 (1102)
+|++.+.++
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 666655444
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=5.3e-27 Score=285.83 Aligned_cols=392 Identities=14% Similarity=0.054 Sum_probs=214.1
Q ss_pred CCCCcCEEEcCCCcCChhhhHhhhcc--CCCcEEEccCCcCCCCCc-hhhccCCCCCcEEecccCccCCcchhhhhcccc
Q 001313 204 RLNNLKVFDLSGNLFNNSILSSLARL--SSLRSLLLYDNRLEGSID-VKEFDSLSNLEELDMSYNEIDNFEVPQACSGLR 280 (1102)
Q Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 280 (1102)
.+++|++|+|++|.+++..+..++.. .+|++|++++|....... ......+++|++|++++|.+++.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~------ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW------ 183 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH------
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH------
Confidence 56666666666666666555555553 337777766665110000 111235666777777666654332100
Q ss_pred ccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCcccccc-ccccccccccccceeecccchhhhchhhHHHhhccC
Q 001313 281 KLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVT-TTTQGFPHFKSLKELYMDDARIALNTSFLQIIGESM 359 (1102)
Q Consensus 281 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 359 (1102)
+......+++|++|++++|.+..... .....+..+++|+.|++++|.. ..++..+.. +
T Consensus 184 -----------------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~---~~l~~~~~~-~ 242 (592)
T 3ogk_B 184 -----------------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI---LELVGFFKA-A 242 (592)
T ss_dssp -----------------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG---GGGHHHHHH-C
T ss_pred -----------------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH---HHHHHHHhh-h
Confidence 11122234444444444444431110 0111123344455555544432 234444444 7
Q ss_pred CCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcCCCCcchhccCCCCCcEEEcCCCccccccCCcccccCCccC
Q 001313 360 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 439 (1102)
Q Consensus 360 ~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~ 439 (1102)
++|++|+++.+............+..+++|+.++++++. ...+|..+..+++|++|++++|.+.+......+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 888888887643332222333467778899999998753 3467777888889999999998866543234457888899
Q ss_pred eeecCCcccccccCccccccCCcceEEecCC-----------CccchhhhccccCCCCcccceeeeeccCCCCCCccCcc
Q 001313 440 DLILSDNHFQIPISLEPLFNHSRLKIFDAEN-----------NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF 508 (1102)
Q Consensus 440 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~p~~ 508 (1102)
+|+++ +.+...........+++|+.|++++ +.+.... ++..
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---------------------------~~~l 373 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---------------------------LIAL 373 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---------------------------HHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH---------------------------HHHH
Confidence 99888 4333222222235677788888772 3333211 1222
Q ss_pred ccCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEcc----CCCCcCCC-----cCCCCCCCCcCEEEccCCc--CCCC
Q 001313 509 LYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV----NDSLVGPF-----RLPIHSHKQLRLLDVSKNN--FQGH 577 (1102)
Q Consensus 509 l~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~----~n~l~~~~-----~~~~~~~~~L~~L~ls~n~--l~~~ 577 (1102)
...+++|++|+++.+.+++..+..+...+++|++|+++ .+.+++.. ...+..+++|+.|+++.|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 33456778888877777766666655567777777775 33444321 1113345666666665432 4444
Q ss_pred CCchhhhcCCCCcEEEccCCcccc-cCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCc
Q 001313 578 IPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 651 (1102)
Q Consensus 578 ip~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~ 651 (1102)
.+..++..+++|++|++++|++++ .++..+.++++|++|++++|.+++.....+...+++|++|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 444444445666666666666554 22333455666666666666655433333334556666666666665543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3e-26 Score=250.56 Aligned_cols=253 Identities=23% Similarity=0.252 Sum_probs=182.7
Q ss_pred CeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc
Q 001313 663 IWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742 (1102)
Q Consensus 663 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 742 (1102)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 233322 346666666666666555556666666666666666666655666666666666666666
Q ss_pred c-cccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc
Q 001313 743 N-ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821 (1102)
Q Consensus 743 ~-l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 821 (1102)
. +. .++...|..+++|++|++++|.+++..|..+.++++|++|++++|++++..+
T Consensus 91 ~~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLR------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCC------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcc------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 5 43 2322266777788888888888887777788888888888888888887767
Q ss_pred hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313 822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 901 (1102)
Q Consensus 822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1102)
..+..+++|++|++++|++++..+..|..++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------------- 177 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLH------------------------------------------------- 177 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------------------------
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCcc-------------------------------------------------
Confidence 7788888888888888888766655555443
Q ss_pred CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCE
Q 001313 902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAV 981 (1102)
Q Consensus 902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 981 (1102)
.|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+..+.. .-...++.
T Consensus 178 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~ 252 (285)
T 1ozn_A 178 ----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQK 252 (285)
T ss_dssp ----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHH
T ss_pred ----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHh
Confidence 6888999999998888999999999999999999999888888999999999999999998655432 11123444
Q ss_pred EEcccCcCcccCCcc
Q 001313 982 FSVAYNNLSGKIPER 996 (1102)
Q Consensus 982 l~ls~N~l~~~~p~~ 996 (1102)
+..+.|.+.|..|..
T Consensus 253 ~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 253 FRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCSEECCCBEEESGG
T ss_pred cccccCccccCCchH
Confidence 557788888888874
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.9e-28 Score=298.64 Aligned_cols=377 Identities=12% Similarity=0.044 Sum_probs=233.9
Q ss_pred CCCCcCEEEccCCcCCCCCCchhhhcCCC-CcEEEccCCcc-cc-cCCcccCCCCCCcEEEccCcccccccch---hHhh
Q 001313 560 SHKQLRLLDVSKNNFQGHIPLEIGDILSR-LTVFNISMNAL-DG-SIPSSFGNMNFLQFLDLSNNQLTGEIPE---HLAM 633 (1102)
Q Consensus 560 ~~~~L~~L~ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~Ls~n~l~~~ip~---~~~~ 633 (1102)
.+++|++|++++|.+++..+..+...+++ |++|++++|.- +. .++.....+++|++|+|++|.+++.-.. .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45666677777666654444444432333 77777766651 10 1112223566777777777766543211 1334
Q ss_pred cCCCCcEEEccccccCC----cccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC---CCCCccccC
Q 001313 634 GCVSLRSLALSNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS---GKIPRWLGN 706 (1102)
Q Consensus 634 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~ 706 (1102)
.+++|++|++++|.+++ ..+..+.++++|++|++++|.+.+ +|..+..+++|++|+++..... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 56777777777777662 223334456777777777776664 4556666777777777643222 233445666
Q ss_pred CCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCC--CCCCccccEEEccCcccccccCcccccCccCccE
Q 001313 707 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784 (1102)
Q Consensus 707 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~ 784 (1102)
+++|+.|+++++.. +.+|..+..+++|++|++++|.+++.... ...+++|+.|+++++...+.++. .+..+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCCCCCE
Confidence 67777777766432 34566666677777777777775543221 12456777777773322223333 4466788888
Q ss_pred EEccC-----------ccCcccC-CccccCCCCCCEEEccCccccccCchhhcC-CCCCCEEECc----CccCCCCCC--
Q 001313 785 LDLSY-----------NHLNGNI-PDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLS----NNNLHGHIP-- 845 (1102)
Q Consensus 785 L~Ls~-----------n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~~p-- 845 (1102)
|++++ |.+++.. +.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++...
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88883 5555432 222445788888888888888777777765 8888888886 555554211
Q ss_pred ---cccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCC--CCCC
Q 001313 846 ---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR--LIGH 920 (1102)
Q Consensus 846 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~--l~~~ 920 (1102)
..+.+ .+.|+.|+|++|. +++.
T Consensus 427 ~~~~~~~~-----------------------------------------------------~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 427 GVRSLLIG-----------------------------------------------------CKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHHHHHH-----------------------------------------------------CTTCCEEEEECCGGGCCHH
T ss_pred HHHHHHHh-----------------------------------------------------CCCCCEEEEecCCCCccHH
Confidence 11111 1257888887543 6655
Q ss_pred Cccccc-CCCcCCEEECCCCCCCC-CCcccccCCCcCCEEeCCCCcCccc-CchhhhcCCCCCEEEcccCcCccc
Q 001313 921 IPPQIG-NLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWK-IPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 921 ip~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
.+..++ .+++|++|+|++|++++ .++..+..+++|+.|+|++|++++. ++.....+++|++|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 555554 37889999999998886 3455567888899999999998755 344456788899999999988754
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.6e-27 Score=263.77 Aligned_cols=247 Identities=23% Similarity=0.268 Sum_probs=151.7
Q ss_pred CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC-CCCCcccc-------CCCCccEEECCCCcccCCCcccc-
Q 001313 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS-GKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLEF- 728 (1102)
Q Consensus 658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~- 728 (1102)
..++|++|++++|.+ .+|..+... |+.|++++|.+. +.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555555555555 344433322 555555555552 23443333 44555555555555555555443
Q ss_pred -cCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCc-----cCccEEEccCccCcccCCccccC
Q 001313 729 -CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC-----LTLMILDLSYNHLNGNIPDRVDG 802 (1102)
Q Consensus 729 -~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~-----~~L~~L~Ls~n~l~~~~p~~~~~ 802 (1102)
..+++|++|++++|++++. |. .+..+ ++|++|++++|++++..|..++.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~------------------------~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR------------------------DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS------------------------SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred HhcCCCccEEEccCCCCcch------------------------hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4555555555555555432 22 33333 67777777777777766677777
Q ss_pred CCCCCEEEccCcccccc--Cchhh--cCCCCCCEEECcCccCCCCC--Cc-ccccccccccccCCCCCCCccchhhhcCC
Q 001313 803 LSQLSYLILAHNNLEGE--VPIQL--CRLNQLQLLDLSNNNLHGHI--PS-CFDNTTLHERYNNGSSLQPFETSFVIMGG 875 (1102)
Q Consensus 803 l~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1102)
+++|++|+|++|++.+. .|..+ ..+++|++|++++|++++.. +. .+.++
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l------------------------ 227 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR------------------------ 227 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC------------------------
Confidence 77777777777776654 23333 67777777777777776311 11 11111
Q ss_pred ccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCc-ccccCCCcCCEEECCCCCCCCCCcccccCCCc
Q 001313 876 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 954 (1102)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 954 (1102)
+.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++
T Consensus 228 -----------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 228 -----------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp -----------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred -----------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 257778888888877665 45666788888888888888 6676665 77
Q ss_pred CCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 955 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 955 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
|+.|||++|+|++. |. +..+++|++|++++|++++
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88888888888865 55 7788888888888888775
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.2e-25 Score=260.87 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=42.1
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 977 (1102)
.|+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4566666666666 3444 3456666667766666 5566666666667777777766666666655443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.4e-27 Score=263.08 Aligned_cols=246 Identities=22% Similarity=0.190 Sum_probs=162.8
Q ss_pred CCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEc
Q 001313 683 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL 762 (1102)
Q Consensus 683 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l 762 (1102)
+++|++|++++|++++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ .++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 3344444444444443333444444444444444444443322 4444444444444444443211 134555555
Q ss_pred cCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc-CCCCCCEEECcCccCC
Q 001313 763 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 763 ~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 841 (1102)
++|++.+..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..+. .+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 55555443222 246788888888888887777888888888888888888877777664 6888999999998887
Q ss_pred CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC
Q 001313 842 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI 921 (1102)
Q Consensus 842 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i 921 (1102)
+..+.. ..+.|+.|+|++|++++.
T Consensus 183 ~~~~~~-------------------------------------------------------~l~~L~~L~Ls~N~l~~l- 206 (317)
T 3o53_A 183 DVKGQV-------------------------------------------------------VFAKLKTLDLSSNKLAFM- 206 (317)
T ss_dssp EEECCC-------------------------------------------------------CCTTCCEEECCSSCCCEE-
T ss_pred cccccc-------------------------------------------------------ccccCCEEECCCCcCCcc-
Confidence 441111 022688899999998854
Q ss_pred cccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc-ccCchhhhcCCCCCEEEcc-cCcCcccCCc
Q 001313 922 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNTLAVFSVA-YNNLSGKIPE 995 (1102)
Q Consensus 922 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~ls-~N~l~~~~p~ 995 (1102)
|+.+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.+.|..|.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 445888899999999999998 46778888899999999999998 7788888888888888888 4455655443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.3e-27 Score=260.39 Aligned_cols=249 Identities=26% Similarity=0.240 Sum_probs=149.0
Q ss_pred CCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcC------
Q 001313 608 GNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS------ 681 (1102)
Q Consensus 608 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------ 681 (1102)
+..++|+.|++++|.+ .+|..+... |+.|++++|.++. ..+|..+.
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~-----------------------~~~~~~~~~~~~~~ 91 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA-----------------------ARIPSRILFGALRV 91 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE-----------------------EECBHHHHHHHHHH
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC-----------------------CCcCHHHHHHHHHh
Confidence 3445566666666666 556555422 5555555555532 12222222
Q ss_pred -CCCCCcEEEccCCcCCCCCCccc--cCCCCccEEECCCCcccCCCcccccCC-----CcccEEEccCcccccCCCCCCC
Q 001313 682 -KCSSLQGLFLSNNSLSGKIPRWL--GNLTVLRHIIMPKNHIEGPIPLEFCQL-----RILQILDISDNNISGSLPSCYD 753 (1102)
Q Consensus 682 -~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~l~~~~p~~~~ 753 (1102)
.+++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++.
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~------ 164 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF------ 164 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC------
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc------
Confidence 34455555555555554444443 4555555555555555544 4444443 5555555555555422
Q ss_pred CccccEEEccCcccccccCcccccCccCccEEEccCccCccc--CCccc--cCCCCCCEEEccCccccc--cCc-hhhcC
Q 001313 754 FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN--IPDRV--DGLSQLSYLILAHNNLEG--EVP-IQLCR 826 (1102)
Q Consensus 754 ~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~ 826 (1102)
+...|.++++|++|++++|++.+. .|..+ ..+++|++|+|++|++++ .++ ..+..
T Consensus 165 ------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 165 ------------------SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226 (312)
T ss_dssp ------------------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT
T ss_pred ------------------hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc
Confidence 211455555566666666655443 12222 566777777777777763 122 34456
Q ss_pred CCCCCEEECcCccCCCCCCc-ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCC
Q 001313 827 LNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 905 (1102)
Q Consensus 827 l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (1102)
+++|++|++++|++++.+|. .+.. .+
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------------------------------------l~ 253 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDW-----------------------------------------------------PS 253 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCC-----------------------------------------------------CT
T ss_pred CCCCCEEECCCCcCCcccchhhhhh-----------------------------------------------------cC
Confidence 78888888888888776642 2211 12
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 967 (1102)
.|+.|+|++|+++ .+|..+. ++|++|||++|+|++. |. +..+++|+.|+|++|++++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6788888888888 7777776 7899999999999876 65 8889999999999999885
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.5e-26 Score=269.75 Aligned_cols=234 Identities=21% Similarity=0.172 Sum_probs=129.3
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEcc
Q 001313 684 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 763 (1102)
Q Consensus 684 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~ 763 (1102)
++|++|++++|.+++..|..|+.+++|+.|++++|.+++..| +..+++|++|++++|.+++..+. ++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECc
Confidence 355555555555555555555555555555555555554443 55555666666666555532211 344444444
Q ss_pred CcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhc-CCCCCCEEECcCccCCC
Q 001313 764 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 842 (1102)
Q Consensus 764 ~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 842 (1102)
+|.+.+..+. .+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 4444432221 235667777777777766666666667777777777777666666654 56666666666666654
Q ss_pred CCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCc
Q 001313 843 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP 922 (1102)
Q Consensus 843 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip 922 (1102)
..+.. . .+.|+.|+|++|.+++..|
T Consensus 184 ~~~~~--~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 184 VKGQV--V-----------------------------------------------------FAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp EECCC--C-----------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred ccccc--c-----------------------------------------------------CCCCCEEECCCCCCCCCCH
Confidence 32111 0 1145556666666654333
Q ss_pred ccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc-ccCchhhhcCCCCCEEEc
Q 001313 923 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNTLAVFSV 984 (1102)
Q Consensus 923 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~l~l 984 (1102)
.|..+++|+.|+|++|.|++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.+++
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 35555666666666666663 4445555566666666666655 444555555544444444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.2e-27 Score=259.73 Aligned_cols=269 Identities=19% Similarity=0.160 Sum_probs=191.8
Q ss_pred CCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEc
Q 001313 612 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 691 (1102)
Q Consensus 612 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 691 (1102)
.++..+++.+.+. ..+..++..+++|++|++++|++++..+..+.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3556677777776 5566666666677777777777777766667777777777777777665443 666666666666
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCccccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 771 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i 771 (1102)
++|++++.. ..++|++|++++|++++..+.. +++|+.|++++| ++++..
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N-----------------------~l~~~~ 136 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANN-----------------------KITMLR 136 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSS-----------------------CCCSGG
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCC-----------------------CCCCcc
Confidence 666665321 2255666666666555433322 334555555555 444433
Q ss_pred CcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313 772 KEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850 (1102)
Q Consensus 772 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 850 (1102)
+. .|..+++|++|++++|.+++..|..+. .+++|++|+|++|++++. |. ...+++|++|+|++|++++..|. +..
T Consensus 137 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~ 212 (317)
T 3o53_A 137 DL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQS 212 (317)
T ss_dssp GB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred ch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcc
Confidence 33 777888899999999998887777664 688999999999998855 32 33588999999999998865443 443
Q ss_pred ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313 851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK 930 (1102)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~ 930 (1102)
++ .|+.|+|++|+++ .+|..+..+++
T Consensus 213 l~-----------------------------------------------------~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 213 AA-----------------------------------------------------GVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GT-----------------------------------------------------TCSEEECTTSCCC-EECTTCCCCTT
T ss_pred cC-----------------------------------------------------cccEEECcCCccc-chhhHhhcCCC
Confidence 32 6889999999998 57888999999
Q ss_pred CCEEECCCCCCC-CCCcccccCCCcCCEEeCC-CCcCcccCchh
Q 001313 931 IQTLNLSHNNLA-GPIPSTFSNLRNIESLDLS-YNKLSWKIPYQ 972 (1102)
Q Consensus 931 L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~~ 972 (1102)
|+.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999999 8889999999999999999 55677766643
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.5e-24 Score=257.19 Aligned_cols=268 Identities=27% Similarity=0.331 Sum_probs=171.9
Q ss_pred CCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeec
Q 001313 588 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL 667 (1102)
Q Consensus 588 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 667 (1102)
+++.|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|++++|+++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l---------------- 96 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL---------------- 96 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC----------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC----------------
Confidence 5677777777776 5555544 56777777777766 5554 245555555555555432
Q ss_pred cCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccC
Q 001313 668 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 747 (1102)
Q Consensus 668 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 747 (1102)
|. .+++|++|++++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 97 ---------p~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 97 ---------PV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp ---------CC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred ---------CC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence 22 23444444444444442 222 23445555555555443 2221 2455555555555542
Q ss_pred CCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCC
Q 001313 748 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 827 (1102)
Q Consensus 748 ~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 827 (1102)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. +
T Consensus 156 -----------------------l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~ 200 (622)
T 3g06_A 156 -----------------------LPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---P 200 (622)
T ss_dssp -----------------------CCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred -----------------------cCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---c
Confidence 221 12356666666666664 33 345667777777777764 3332 4
Q ss_pred CCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCC
Q 001313 828 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 907 (1102)
Q Consensus 828 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 907 (1102)
++|+.|++++|.++. +|.. ++.|
T Consensus 201 ~~L~~L~L~~N~l~~-l~~~--------------------------------------------------------~~~L 223 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPAL--------------------------------------------------------PSGL 223 (622)
T ss_dssp TTCCEEECCSSCCSS-CCCC--------------------------------------------------------CTTC
T ss_pred chhhEEECcCCcccc-cCCC--------------------------------------------------------CCCC
Confidence 677888888887763 2221 1257
Q ss_pred ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987 (1102)
Q Consensus 908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 987 (1102)
+.|+|++|++++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|
T Consensus 224 ~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 224 KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 889999999986 66 456899999999999994 565 5789999999999999 78999999999999999999
Q ss_pred cCcccCCccccccC
Q 001313 988 NLSGKIPERAAQFA 1001 (1102)
Q Consensus 988 ~l~~~~p~~~~~~~ 1001 (1102)
++++.+|..+..+.
T Consensus 295 ~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLSERTLQALREIT 308 (622)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhcc
Confidence 99998887554443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.8e-26 Score=266.57 Aligned_cols=235 Identities=22% Similarity=0.197 Sum_probs=174.9
Q ss_pred CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739 (1102)
Q Consensus 660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 739 (1102)
++|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 355555555555555445555555556666666555554433 5556666666666666553322 256666666
Q ss_pred cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccc
Q 001313 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEG 818 (1102)
Q Consensus 740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~ 818 (1102)
++|.+++..+.. +++|+.|++++|.+++..|. .|.++++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 666666554432 35677777777777765565 888999999999999999998888886 79999999999999997
Q ss_pred cCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeee
Q 001313 819 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 898 (1102)
Q Consensus 819 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (1102)
..+ ...+++|+.|+|++|.+++.+|. +..++
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~---------------------------------------------- 214 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA---------------------------------------------- 214 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT----------------------------------------------
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC----------------------------------------------
Confidence 633 34699999999999999976554 54433
Q ss_pred ccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC-CCCcccccCCCcCCEEeCC
Q 001313 899 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLS 961 (1102)
Q Consensus 899 ~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls 961 (1102)
.|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 215 -------~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 215 -------GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 68999999999996 7888999999999999999999 7888889999999888876
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9e-27 Score=284.01 Aligned_cols=197 Identities=16% Similarity=0.126 Sum_probs=115.1
Q ss_pred CCcCcCceEecCCCCcEEEEEcCCCCCCcccccccccCCCCCCCCEEeCCCCCCCCccc----------chhhhh-hcCC
Q 001313 60 DCCQWERVSCNNTMGRVVVLDLSQTHRGEYWYLNASLFTPFQQLESLDLRDNDIAGCVE----------NEGLER-LSRL 128 (1102)
Q Consensus 60 ~cc~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~----------~~~~~~-l~~l 128 (1102)
=|++|+++... ..+.+++...... .....+..|++|++|+++++....... ...+.. ...+
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~ 104 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY 104 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred HHHHHHHhhhh----hceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence 36689888322 2345666554211 123456788999999999875321110 001112 2467
Q ss_pred CCCcEEeCCCCcCCcchhHhhh-cCCCcCEEEcCCC-cccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCC
Q 001313 129 SNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSAN-RLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLN 206 (1102)
Q Consensus 129 ~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~ 206 (1102)
++|++|+|++|.+++..+..+. .+++|++|++++| .+.....+..+.++++|++|++++|.+++..+...+.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 8888888888888877777775 6888888888888 4432111223347888888888888766654432333344667
Q ss_pred CcCEEEcCCCc--CChh-hhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCCcEEecccC
Q 001313 207 NLKVFDLSGNL--FNNS-ILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNLEELDMSYN 265 (1102)
Q Consensus 207 ~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 265 (1102)
+|++|++++|. ++.. +...+.++++|++|++++|...+.++ ..+..+++|++|+++.+
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccc
Confidence 77888877775 3322 22223455677777776662211222 24445555666655443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.3e-24 Score=233.01 Aligned_cols=209 Identities=23% Similarity=0.294 Sum_probs=124.3
Q ss_pred CccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 788 (1102)
Q Consensus 709 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls 788 (1102)
+|++|++++|.+++..+..|.++++|++|++++|++++ ++...|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence 34455555555444444444455555555555554432 222244445555555555
Q ss_pred CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCC-CCcccccccccccccCCCCCCCcc
Q 001313 789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFE 867 (1102)
Q Consensus 789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~ 867 (1102)
+|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+.+++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~--------------- 149 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------- 149 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence 5555554445555555555555555555544444455555555555555555542 344444332
Q ss_pred chhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCC----EEECCCCCCCC
Q 001313 868 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ----TLNLSHNNLAG 943 (1102)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~----~L~Ls~N~l~~ 943 (1102)
.|+.|+|++|++++..+..|..+++|+ .|++++|.+++
T Consensus 150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 455566666666655555555555555 78888888887
Q ss_pred CCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 944 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 944 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 66666654 3788888888888876666678888888888888888888775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.2e-23 Score=223.57 Aligned_cols=218 Identities=24% Similarity=0.231 Sum_probs=168.2
Q ss_pred CCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCc
Q 001313 676 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV 755 (1102)
Q Consensus 676 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~ 755 (1102)
+|..+. ++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------- 90 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--------- 90 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE---------
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc---------
Confidence 444432 467888888888876666677888888888888888877777778888888888888887763
Q ss_pred cccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc-CchhhcCCCCCCEEE
Q 001313 756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE-VPIQLCRLNQLQLLD 834 (1102)
Q Consensus 756 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 834 (1102)
++...|.++++|++|++++|++++..+..+..+++|++|++++|++++. +|..+..+++|++|+
T Consensus 91 ---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 91 ---------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp ---------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ---------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 2222677778888888888888877776788888888888888888864 588888889999999
Q ss_pred CcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCc-eEECC
Q 001313 835 LSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS-GLDLS 913 (1102)
Q Consensus 835 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls 913 (1102)
+++|++++..+..+..+.. ...+. .|+++
T Consensus 156 Ls~N~l~~~~~~~~~~l~~--------------------------------------------------L~~l~l~L~ls 185 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQ--------------------------------------------------MPLLNLSLDLS 185 (276)
T ss_dssp CCSSCCCEECGGGGHHHHT--------------------------------------------------CTTCCEEEECC
T ss_pred CCCCCCCcCCHHHhhhhhh--------------------------------------------------ccccceeeecC
Confidence 9999888776666554430 00122 78999
Q ss_pred CCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313 914 CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970 (1102)
Q Consensus 914 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 970 (1102)
+|++++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 186 ~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99998766655554 589999999999998888889999999999999999997654
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.7e-22 Score=218.39 Aligned_cols=207 Identities=24% Similarity=0.256 Sum_probs=179.6
Q ss_pred cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEcc
Q 001313 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILA 812 (1102)
Q Consensus 733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 812 (1102)
..+.++++++.++. +|..+. .+++.|++++|++.+ ++...|.++++|++|++++|+++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57899999999984 554332 689999999999985 555489999999999999999997777778899999999999
Q ss_pred CccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeec
Q 001313 813 HNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 892 (1102)
Q Consensus 813 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1102)
+|++++..+..|..+++|++|++++|++++..|..|..++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------------------- 133 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT---------------------------------------- 133 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT----------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc----------------------------------------
Confidence 9999987778889999999999999999988777766554
Q ss_pred cceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchh
Q 001313 893 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 972 (1102)
Q Consensus 893 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 972 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|+|++|++++..+..
T Consensus 134 -------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 134 -------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 6899999999999877777999999999999999999888888999999999999999999877777
Q ss_pred hhcCCCCCEEEcccCcCcccCCc
Q 001313 973 LVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 973 l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+..+++|+.|++++|++.+.++.
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccccCCCEEEecCCCeeCCCcc
Confidence 88899999999999999887764
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.1e-22 Score=216.38 Aligned_cols=201 Identities=25% Similarity=0.284 Sum_probs=101.3
Q ss_pred ccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313 710 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 788 (1102)
Q Consensus 710 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls 788 (1102)
.+.++++++.++. +|..+. ++++.|++++|++++..+..+ .+++|++|++++|++++ +|...|.++++|++|+++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECC
Confidence 4455555555542 333222 345555555555554433222 34555555555555542 333344555555555555
Q ss_pred CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccc
Q 001313 789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFET 868 (1102)
Q Consensus 789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 868 (1102)
+|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------- 157 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT---------------- 157 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc----------------
Confidence 5555544444455555555555555555554444555555555555555555544333333222
Q ss_pred hhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCccc
Q 001313 869 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST 948 (1102)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 948 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|++++..+..
T Consensus 158 -------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 158 -------------------------------------SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -------------------------------------ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 3455555555555444444555555555555555555444444
Q ss_pred ccCCCcCCEEeCCCCcCcc
Q 001313 949 FSNLRNIESLDLSYNKLSW 967 (1102)
Q Consensus 949 ~~~l~~L~~L~Ls~N~l~~ 967 (1102)
|..+++|+.|+|++|.+..
T Consensus 201 ~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred hccccCCCEEEecCCCeeC
Confidence 5555555555555555543
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=3.2e-25 Score=270.28 Aligned_cols=215 Identities=17% Similarity=0.123 Sum_probs=96.8
Q ss_pred ccCCCCCcCEEEcCCCcCChh---------------hhHhhhccCCCcEEEccCCcCCCCCchhhcc-CCCCCcEEeccc
Q 001313 201 RLSRLNNLKVFDLSGNLFNNS---------------ILSSLARLSSLRSLLLYDNRLEGSIDVKEFD-SLSNLEELDMSY 264 (1102)
Q Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~---------------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~ 264 (1102)
.+..+++|++|+++++..... +......+++|++|++++|.+.+.... .+. .+++|++|++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEES
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCC
Confidence 455667777777777642211 112234566677777776665433222 232 466677777766
Q ss_pred C-ccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccccccccc-cccccccceeeccc
Q 001313 265 N-EIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETVTTTTQG-FPHFKSLKELYMDD 342 (1102)
Q Consensus 265 n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-~~~l~~L~~L~l~~ 342 (1102)
| .+++. .+......+++|++|++++|.+.......... ...+++|+.|++++
T Consensus 140 ~~~~~~~--------------------------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~ 193 (594)
T 2p1m_B 140 CEGFSTD--------------------------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193 (594)
T ss_dssp CEEEEHH--------------------------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTT
T ss_pred cCCCCHH--------------------------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecc
Confidence 6 33321 12233335666666666666654322211111 12344555555554
Q ss_pred chhhhchhhHHHhhccCCCCcEEecccCcCcCCcccccCCccCCCCccEEEcCCCcC-------CCCcchhccCCCCCcE
Q 001313 343 ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-------RGSLPWCLANMTSLRI 415 (1102)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l-------~~~~p~~l~~l~~L~~ 415 (1102)
+...........+...+++|++|++++|......+. .+..+++|++|++..+.. . .++..+.++++|+.
T Consensus 194 ~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT---LLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRC 269 (594)
T ss_dssp CCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH---HHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCE
T ss_pred cCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH---HHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCccc
Confidence 431111111111211256666666665522111222 344455566665443321 1 12234555555555
Q ss_pred E-EcCCCccccccCCcccccCCccCeeecCCccc
Q 001313 416 L-DVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 448 (1102)
Q Consensus 416 L-~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l 448 (1102)
| .+.+... +.+ +..+..+++|++|++++|.+
T Consensus 270 Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 270 LSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp EECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCC
T ss_pred ccCCcccch-hhH-HHHHHhhCCCCEEEccCCCC
Confidence 5 2322211 111 22223445555555555543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=220.21 Aligned_cols=223 Identities=24% Similarity=0.268 Sum_probs=176.1
Q ss_pred cEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcc
Q 001313 687 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 766 (1102)
Q Consensus 687 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~ 766 (1102)
..+++..+.+... .....+++|+.|++++|.++.. ..+..+++|++|++++|.+++
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------- 77 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------- 77 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--------------------
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--------------------
Confidence 3444445544432 2244566777777777776532 235666777777777666652
Q ss_pred cccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCc
Q 001313 767 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 846 (1102)
Q Consensus 767 l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 846 (1102)
++ .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 78 ----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 78 ----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp ----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 22 577788899999999999988888888999999999999999988888889999999999999999877776
Q ss_pred ccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCccccc
Q 001313 847 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG 926 (1102)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~ 926 (1102)
.|..++ .|+.|++++|++++..|..|+
T Consensus 152 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 152 VFDKLT-----------------------------------------------------NLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp TTTTCT-----------------------------------------------------TCCEEECCSSCCCCCCTTTTT
T ss_pred HhccCc-----------------------------------------------------cCCEEECCCCCcCccCHHHhc
Confidence 665544 688999999999988888889
Q ss_pred CCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccc
Q 001313 927 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ 999 (1102)
Q Consensus 927 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 999 (1102)
.+++|++|+|++|++++..|..|+.+++|+.|++++|.+.+..| .|++++++.|.++|.+|...+.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccc
Confidence 99999999999999999999889999999999999999987644 6788899999999999985443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.7e-22 Score=216.53 Aligned_cols=180 Identities=27% Similarity=0.254 Sum_probs=152.9
Q ss_pred cccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEEC
Q 001313 756 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835 (1102)
Q Consensus 756 ~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 835 (1102)
.++.|++++|.+.+..+. .|.++++|++|++++|.+++..+. +.+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 32 ~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 444555555555443344 788899999999999999875443 78899999999999998 77888899999999999
Q ss_pred cCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCC
Q 001313 836 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915 (1102)
Q Consensus 836 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 915 (1102)
++|++++..|..|..++ .|+.|+|++|
T Consensus 108 ~~N~l~~l~~~~~~~l~-----------------------------------------------------~L~~L~L~~N 134 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG-----------------------------------------------------ELQELYLKGN 134 (290)
T ss_dssp CSSCCCCCCSSTTTTCT-----------------------------------------------------TCCEEECTTS
T ss_pred CCCcCcccCHHHHcCCC-----------------------------------------------------CCCEEECCCC
Confidence 99999988777776654 6899999999
Q ss_pred CCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccC
Q 001313 916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI 993 (1102)
Q Consensus 916 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 993 (1102)
++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+..|+.+++++|++.|.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 999888888999999999999999999888888899999999999999999 68888888899999999999998765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.6e-22 Score=218.56 Aligned_cols=183 Identities=27% Similarity=0.255 Sum_probs=162.1
Q ss_pred cCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313 780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 859 (1102)
Q Consensus 780 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 859 (1102)
++++.|++++|.+++..|..|..+++|++|+|++|++++..+. ..+++|++|++++|+++ .+|..+..+.
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------- 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLP------- 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCT-------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCC-------
Confidence 6899999999999999899999999999999999999965443 78999999999999998 5565544333
Q ss_pred CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313 860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939 (1102)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 939 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|
T Consensus 101 ----------------------------------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 101 ----------------------------------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred ----------------------------------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 6899999999999888889999999999999999
Q ss_pred CCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+++ .+|........+..+.+.+||+.|+|.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 999998999999999999999999999777777889999999999999999 5666566677788889999999998753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.6e-23 Score=222.36 Aligned_cols=227 Identities=25% Similarity=0.248 Sum_probs=166.3
Q ss_pred cCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccC
Q 001313 662 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 741 (1102)
Q Consensus 662 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 741 (1102)
+..+++..+.+... .....+++|+.|++++|.++ .++ .+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33444444444322 22445666777777777665 222 366677777777777777653 3567777777777777
Q ss_pred cccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCc
Q 001313 742 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 821 (1102)
Q Consensus 742 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 821 (1102)
|.+++ ++...|.++++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 95 n~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 95 NQLQS------------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp SCCCC------------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCc------------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 77663 222256677778888888888877777777888888888888888887777
Q ss_pred hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccC
Q 001313 822 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 901 (1102)
Q Consensus 822 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1102)
..+..+++|+.|++++|++++..|..|..++
T Consensus 151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------------------------------------- 181 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------------------------------------------------- 181 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------------------------
T ss_pred HHhccCccCCEEECCCCCcCccCHHHhcCCc-------------------------------------------------
Confidence 7778888888888888888877666655443
Q ss_pred CcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCC
Q 001313 902 RVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 978 (1102)
Q Consensus 902 ~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 978 (1102)
.|+.|+|++|++++..|..|+.+++|+.|+|++|.+++..| +|+.|+++.|+++|.+|.+++.+..
T Consensus 182 ----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 182 ----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccCC
Confidence 67888999999988888888999999999999998886544 6889999999999999998876543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.3e-21 Score=207.05 Aligned_cols=181 Identities=26% Similarity=0.255 Sum_probs=151.4
Q ss_pred cEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcC
Q 001313 758 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 837 (1102)
Q Consensus 758 ~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 837 (1102)
++++++++.+. .+|. .+. ++++.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 17 ~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp TEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34444444443 3555 332 5788899999999988888889999999999999999988888889999999999999
Q ss_pred ccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCC
Q 001313 838 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 917 (1102)
Q Consensus 838 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 917 (1102)
|++++..|..|..+. .|+.|+|++|++
T Consensus 93 n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l 119 (251)
T 3m19_A 93 NQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQL 119 (251)
T ss_dssp SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred CcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCcC
Confidence 999877776665544 688999999999
Q ss_pred CCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 918 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 918 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|||++|++++..|..+..+++|++|++++|+++|....
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 987777789999999999999999988888899999999999999999988888899999999999999999987444
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=6.6e-23 Score=231.95 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=42.6
Q ss_pred CCceEECCCCCCCCCCc----ccccCCCcCCEEECCCCCCCCCCc-------ccccCCCcCCEEeCCCCcCcccCchhh
Q 001313 906 LLSGLDLSCNRLIGHIP----PQIGNLTKIQTLNLSHNNLAGPIP-------STFSNLRNIESLDLSYNKLSWKIPYQL 973 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~~l 973 (1102)
.|+.|||++|.+++..+ ..+..+++|++|+|++|.+++..+ ..+..+++|+.||+++|++....|..+
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 46667777776665444 234556677777777777554433 356667777777777777776544444
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.2e-21 Score=205.68 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCc-eEECCCCCCCCCCccc-ccCCCcCCEEECCCCC-CCCCCcccccCC-CcCCEEeCCCCcCcccCchhhhcCCCCCE
Q 001313 906 LLS-GLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNN-LAGPIPSTFSNL-RNIESLDLSYNKLSWKIPYQLVELNTLAV 981 (1102)
Q Consensus 906 ~L~-~L~Ls~N~l~~~ip~~-~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 981 (1102)
.|+ .|++++|+++ .+|.. |.. ++|+.|+|++|. +++..+..|.++ ++|+.||+++|++++ +|.. .+++|+.
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~ 230 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE 230 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred cceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence 345 5555555555 33332 333 566666666663 665555566666 666666666666663 3322 3455566
Q ss_pred EEcccC
Q 001313 982 FSVAYN 987 (1102)
Q Consensus 982 l~ls~N 987 (1102)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 665544
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=8.7e-23 Score=230.95 Aligned_cols=263 Identities=19% Similarity=0.191 Sum_probs=183.1
Q ss_pred eeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCC----ccccCCC-CccEEECCCCcccCCCcccccCC-----Cc
Q 001313 664 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP----RWLGNLT-VLRHIIMPKNHIEGPIPLEFCQL-----RI 733 (1102)
Q Consensus 664 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 733 (1102)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777777666666666667777777777775555 5566666 67777777777776666655553 66
Q ss_pred ccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCc-cCccEEEccCccCcccCCccc----cC-CCCCC
Q 001313 734 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC-LTLMILDLSYNHLNGNIPDRV----DG-LSQLS 807 (1102)
Q Consensus 734 L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~----~~-l~~L~ 807 (1102)
|++|++++|.+++..+.. +.. .+..+ ++|++|++++|++++..+..+ .. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~-------------------l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDE-------------------LVK-TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHH-------------------HHH-HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHH-------------------HHH-HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 777777776665332211 111 23444 788888888888887665443 33 36899
Q ss_pred EEEccCccccccCc----hhhcCCC-CCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccc
Q 001313 808 YLILAHNNLEGEVP----IQLCRLN-QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 882 (1102)
Q Consensus 808 ~L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1102)
+|+|++|++++..+ ..+..++ +|++|+|++|++++..+..+...-
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------ 191 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------ 191 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence 99999999986444 3445565 899999999998876665443220
Q ss_pred cccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC----CcccccC-CCcCCEEECCCCCCCCCCc----ccccCCC
Q 001313 883 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IPPQIGN-LTKIQTLNLSHNNLAGPIP----STFSNLR 953 (1102)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~----ip~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~ 953 (1102)
...+..|+.|||++|.+++. ++..+.. .++|++|||++|.+++..+ ..+..++
T Consensus 192 ------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 192 ------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp ------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 00112689999999999864 4555555 3599999999999998766 4467789
Q ss_pred cCCEEeCCCCcCcccCc-------hhhhcCCCCCEEEcccCcCcccCC
Q 001313 954 NIESLDLSYNKLSWKIP-------YQLVELNTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 954 ~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~l~ls~N~l~~~~p 994 (1102)
+|+.|+|++|++.+..+ ..+..++.|+.||+++|++....|
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 99999999999654433 367788899999999999987644
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=216.59 Aligned_cols=80 Identities=29% Similarity=0.388 Sum_probs=49.3
Q ss_pred CCceEECCCCCCCCCCcccccCC---CcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEE
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNL---TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 982 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 982 (1102)
.|+.|||++|++++.+|+.+..+ ++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 45566666666666556555555 46666666666666 4455553 5666777777777653 32 4556666777
Q ss_pred EcccCcCc
Q 001313 983 SVAYNNLS 990 (1102)
Q Consensus 983 ~ls~N~l~ 990 (1102)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777665
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.4e-23 Score=236.98 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=181.7
Q ss_pred cCCCCcCCCCCCcEEEccCCcCCCCC----CccccCCCCccEEECCCC---cccCCCcccc-------cCCCcccEEEcc
Q 001313 675 EIPQSLSKCSSLQGLFLSNNSLSGKI----PRWLGNLTVLRHIIMPKN---HIEGPIPLEF-------CQLRILQILDIS 740 (1102)
Q Consensus 675 ~~~~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~L~l~~n---~l~~~~~~~~-------~~l~~L~~L~ls 740 (1102)
.++..+..+++|++|++++|.+++.. +..+..+++|++|++++| ++++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 34556677788888888888877543 344667788888888875 3444555444 566777777777
Q ss_pred CcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc----CC---------CCCC
Q 001313 741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD----GL---------SQLS 807 (1102)
Q Consensus 741 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~----~l---------~~L~ 807 (1102)
+|.+++.-. ..+|. .+..+++|++|+|++|.+++..+..+. .+ ++|+
T Consensus 103 ~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 103 DNAFGPTAQ-------------------EPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp SCCCCTTTH-------------------HHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCcCCHHHH-------------------HHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 776653100 02444 667778888888888888654443333 33 8899
Q ss_pred EEEccCcccc-ccCc---hhhcCCCCCCEEECcCccCCC-----CCCcccccccccccccCCCCCCCccchhhhcCCccC
Q 001313 808 YLILAHNNLE-GEVP---IQLCRLNQLQLLDLSNNNLHG-----HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDV 878 (1102)
Q Consensus 808 ~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (1102)
+|+|++|+++ +.+| ..+..+++|++|++++|.++. ..|..+..+
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~--------------------------- 215 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--------------------------- 215 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC---------------------------
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC---------------------------
Confidence 9999999987 4455 467788999999999998862 222233222
Q ss_pred CccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC----CCCcccccCCCcCCEEECCCCCCCCC----Ccccc-
Q 001313 879 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI----GHIPPQIGNLTKIQTLNLSHNNLAGP----IPSTF- 949 (1102)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~ip~~~~~l~~L~~L~Ls~N~l~~~----~p~~~- 949 (1102)
+.|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +|..+
T Consensus 216 --------------------------~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 216 --------------------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp --------------------------TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred --------------------------CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 26889999999986 67888899999999999999999976 66777
Q ss_pred -cCCCcCCEEeCCCCcCcc----cCchhh-hcCCCCCEEEcccCcCcccCC
Q 001313 950 -SNLRNIESLDLSYNKLSW----KIPYQL-VELNTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 950 -~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~l~ls~N~l~~~~p 994 (1102)
+.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 448999999999999998 588887 668999999999999998765
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=212.52 Aligned_cols=205 Identities=23% Similarity=0.196 Sum_probs=131.7
Q ss_pred CCccCeeeccCccCcccCCCCc--CCCCCCcEEEccCCcCCCCCC----ccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313 659 LTNLIWLQLEGNHFVGEIPQSL--SKCSSLQGLFLSNNSLSGKIP----RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732 (1102)
Q Consensus 659 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 732 (1102)
+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE------ 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH------
Confidence 3457777777777766666665 666667777777666664333 1222334444444444444333333
Q ss_pred cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCccc---C-CccccCCCCCCE
Q 001313 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN---I-PDRVDGLSQLSY 808 (1102)
Q Consensus 733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~---~-p~~~~~l~~L~~ 808 (1102)
.|.++++|++|++++|++.+. . +..+..+++|++
T Consensus 164 ------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 164 ------------------------------------------QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp ------------------------------------------SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ------------------------------------------HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 444455555555555554431 1 223356677777
Q ss_pred EEccCccccccCch----hhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313 809 LILAHNNLEGEVPI----QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884 (1102)
Q Consensus 809 L~L~~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1102)
|+|++|+++. +|. .+..+++|++|||++|++++..|..+..+.
T Consensus 202 L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-------------------------------- 248 (310)
T 4glp_A 202 LALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-------------------------------- 248 (310)
T ss_dssp CBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------------------------------
T ss_pred EECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------------------------------
Confidence 7777777762 222 246778888888888888877776654432
Q ss_pred cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313 885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964 (1102)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 964 (1102)
.++.|+.|+|++|+++ .+|..+. ++|++|||++|+|++. |. +..+++|+.|+|++|+
T Consensus 249 ------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 ------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred ------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 1236888999999998 6777765 7999999999999965 33 6788999999999999
Q ss_pred Ccc
Q 001313 965 LSW 967 (1102)
Q Consensus 965 l~~ 967 (1102)
++.
T Consensus 306 l~~ 308 (310)
T 4glp_A 306 FLV 308 (310)
T ss_dssp TSC
T ss_pred CCC
Confidence 874
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.3e-20 Score=198.03 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=165.0
Q ss_pred cCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313 780 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 859 (1102)
Q Consensus 780 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 859 (1102)
...+.++++++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.+++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------- 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence 45788999999998 5666655 6899999999999999999999999999999999999998887776654
Q ss_pred CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313 860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939 (1102)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 939 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 6899999999999888888999999999999999
Q ss_pred CCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCC
Q 001313 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 1016 (1102)
Q Consensus 940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~ 1016 (1102)
+|++..+..|..+++|+.|+|++|+|++..|..+..+++|++|++++|++++..|..+..+..+..+.+.+|++.|.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99988888899999999999999999988777899999999999999999988887678888899999999999987
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.3e-20 Score=199.79 Aligned_cols=203 Identities=19% Similarity=0.163 Sum_probs=111.3
Q ss_pred CCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcc-cccccchhHhhcCCCCcEEEccc-cccCCcccc
Q 001313 577 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ-LTGEIPEHLAMGCVSLRSLALSN-NNLEGHMFS 654 (1102)
Q Consensus 577 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~~~ 654 (1102)
.+|. + .++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |++++..+.
T Consensus 25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 5665 2 3467777777777776666667777777777777775 55 55554444555555555555 555544444
Q ss_pred cccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCcc---EEECCCC-cccCCCcccccC
Q 001313 655 RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR---HIIMPKN-HIEGPIPLEFCQ 730 (1102)
Q Consensus 655 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~ 730 (1102)
.|.++++ |++|++++|++++ +|. +..+++|+ .|++++| .+++..+..|..
T Consensus 100 ~f~~l~~------------------------L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 100 ALKELPL------------------------LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp SEECCTT------------------------CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred HhCCCCC------------------------CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 4444444 4444444444442 333 44444444 5555555 454444444555
Q ss_pred CCccc-EEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCcc-CcccCCccccCC-CCCC
Q 001313 731 LRILQ-ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH-LNGNIPDRVDGL-SQLS 807 (1102)
Q Consensus 731 l~~L~-~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~ 807 (1102)
+++|+ .|++++|+++ .+|...|.. ++|+.|++++|+ +++..+..|.++ ++|+
T Consensus 154 l~~L~~~L~l~~n~l~------------------------~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFT------------------------SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp TBSSEEEEECCSCCCC------------------------EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred hhcceeEEEcCCCCCc------------------------ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 55555 5555555554 233323333 455566666663 555555555666 6666
Q ss_pred EEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313 808 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838 (1102)
Q Consensus 808 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 838 (1102)
.|++++|++++ +|.. .+++|+.|+++++
T Consensus 209 ~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 209 LLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred EEECCCCcccc-CChh--HhccCceeeccCc
Confidence 66666666653 3322 4556666666554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.9e-22 Score=222.37 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCCCCcEEEccCCcCCCC-CCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc
Q 001313 682 KCSSLQGLFLSNNSLSGK-IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 742 (1102)
Q Consensus 682 ~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 742 (1102)
.+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 345555555555554433 4444445555555555555554444444555555555555554
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.2e-22 Score=227.92 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=148.6
Q ss_pred CCCchhhhcCCCCcEEEccCCcccccC----CcccCCCCCCcEEEccCc---ccccccchhH------hhcCCCCcEEEc
Q 001313 577 HIPLEIGDILSRLTVFNISMNALDGSI----PSSFGNMNFLQFLDLSNN---QLTGEIPEHL------AMGCVSLRSLAL 643 (1102)
Q Consensus 577 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~ip~~~------~~~l~~L~~L~L 643 (1102)
.++..+.. +++|++|++++|.+.... +..+..+++|++|+|++| ++++.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34444443 567777777777776542 234667777777777775 3444555444 234566666666
Q ss_pred cccccCC----cccccccCCCccCeeeccCccCcccCCCCc----CCC---------CCCcEEEccCCcCC-CCCC---c
Q 001313 644 SNNNLEG----HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL----SKC---------SSLQGLFLSNNSLS-GKIP---R 702 (1102)
Q Consensus 644 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~-~~~p---~ 702 (1102)
++|.++. .++..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|+++ +.+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 6666655 234444555566666666665543222222 222 55555566555554 2222 2
Q ss_pred cccCCCCccEEECCCCcccC-----CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc
Q 001313 703 WLGNLTVLRHIIMPKNHIEG-----PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 777 (1102)
Q Consensus 703 ~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~ 777 (1102)
.+..+++|++|++++|.++. ..|..+..+++|+.|+|++|.++..- .+.+|. .+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~ 241 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALK 241 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGG
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHc
Confidence 34445555555555555541 12224444555555555555442100 034565 777
Q ss_pred CccCccEEEccCccCccc----CCcccc--CCCCCCEEEccCccccc----cCchhh-cCCCCCCEEECcCccCCCCCC
Q 001313 778 NCLTLMILDLSYNHLNGN----IPDRVD--GLSQLSYLILAHNNLEG----EVPIQL-CRLNQLQLLDLSNNNLHGHIP 845 (1102)
Q Consensus 778 ~~~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p 845 (1102)
.+++|++|+|++|.+++. +|..+. .+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888899999999988865 556663 38899999999999987 477777 668999999999999987664
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.3e-21 Score=219.47 Aligned_cols=248 Identities=17% Similarity=0.188 Sum_probs=172.9
Q ss_pred cCeeeccCccCcccCCCCcCCC--CCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCC-CcccccCCCcccEEE
Q 001313 662 LIWLQLEGNHFVGEIPQSLSKC--SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP-IPLEFCQLRILQILD 738 (1102)
Q Consensus 662 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 738 (1102)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455555555544 2334444 6777788888877765554 45678888888888887755 666777778888888
Q ss_pred ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCc-cCccc-CCccccCCCCCCEEEccCc-c
Q 001313 739 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN-IPDRVDGLSQLSYLILAHN-N 815 (1102)
Q Consensus 739 ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~ 815 (1102)
+++|.+++ ..+. .+..+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~-----------------------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSD-----------------------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCH-----------------------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCH-----------------------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 77776653 3344 5667788888888888 56652 5666777888888888888 7
Q ss_pred cccc-CchhhcCCC-CCCEEECcCcc--CC-CCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeee
Q 001313 816 LEGE-VPIQLCRLN-QLQLLDLSNNN--LH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 890 (1102)
Q Consensus 816 l~~~-~p~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1102)
+++. ++..+..++ +|++|++++|. ++ +.+|..+..+
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~--------------------------------------- 221 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC--------------------------------------- 221 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---------------------------------------
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC---------------------------------------
Confidence 7754 567778888 88888888883 43 2233322222
Q ss_pred eccceeeeccCCcCCCCceEECCCCC-CCCCCcccccCCCcCCEEECCCCCCCCCCcc---cccCCCcCCEEeCCCCcCc
Q 001313 891 TTKSITYTYQGRVPSLLSGLDLSCNR-LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS---TFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 891 ~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~ 966 (1102)
+.|+.|++++|. +++..+..+..+++|++|+|++|. +..+. .++++++|+.|++++| ++
T Consensus 222 --------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 222 --------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp --------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred --------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 267888888888 677777788888999999999885 33344 5778889999999988 44
Q ss_pred ccCchhhhcC-CCCCEEEcccCcCcccCCcc
Q 001313 967 WKIPYQLVEL-NTLAVFSVAYNNLSGKIPER 996 (1102)
Q Consensus 967 ~~~p~~l~~l-~~L~~l~ls~N~l~~~~p~~ 996 (1102)
.. .+..+ ..+..|++++|++++..|..
T Consensus 285 ~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 285 DG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HH---HHHHHHhhCcceEEecccCccccCCc
Confidence 22 23333 23566678899998888763
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=6.1e-20 Score=202.08 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEE
Q 001313 682 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 761 (1102)
Q Consensus 682 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ 761 (1102)
.+++|++|++++|.++. +| .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~--------------- 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--------------- 99 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC---------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC---------------
Confidence 34555555555555542 33 34455555555555555543322 4555555555555554431
Q ss_pred ccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCC
Q 001313 762 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 841 (1102)
Q Consensus 762 l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 841 (1102)
++ .+..+++|++|++++|++++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 100 ---------~~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 100 ---------VS--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ---------CG--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ---------ch--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 11 344445555555555555542 1 24555555555555555553322 444555555555544443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=8.1e-20 Score=201.08 Aligned_cols=195 Identities=24% Similarity=0.322 Sum_probs=158.4
Q ss_pred cCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccE
Q 001313 705 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 784 (1102)
Q Consensus 705 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~ 784 (1102)
..+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~------------------------~~~~--~~~l~~L~~ 89 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT------------------------DLAP--LKNLTKITE 89 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC------------------------CCGG--GTTCCSCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC------------------------CChh--HccCCCCCE
Confidence 456667777777777664 33 4666667777777666655 2333 788899999
Q ss_pred EEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCC
Q 001313 785 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 864 (1102)
Q Consensus 785 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 864 (1102)
|++++|++++. ..+..+++|++|++++|++++. +. +..+++|+.|++++|.+++..+ +..++
T Consensus 90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------ 151 (308)
T 1h6u_A 90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLT------------ 151 (308)
T ss_dssp EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCT------------
T ss_pred EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCC------------
Confidence 99999999864 4689999999999999999964 43 8999999999999999986544 33332
Q ss_pred CccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCC
Q 001313 865 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP 944 (1102)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 944 (1102)
.|+.|+|++|++++..+ +..+++|+.|+|++|.+++.
T Consensus 152 -----------------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 152 -----------------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp -----------------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred -----------------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 68999999999997444 99999999999999999976
Q ss_pred CcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313 945 IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 945 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
.+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 55 8899999999999999997653 88999999999999999863
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.4e-19 Score=201.55 Aligned_cols=244 Identities=17% Similarity=0.117 Sum_probs=163.5
Q ss_pred CEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcE-EEc
Q 001313 565 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS-LAL 643 (1102)
Q Consensus 565 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~-L~L 643 (1102)
+.++.++++++ .||..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 57888888888 788765 4678888888888887666778888888888888888876777777767766654 455
Q ss_pred cccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccC-CcCCCCCCccccCCCCccEEECCCCcccC
Q 001313 644 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEG 722 (1102)
Q Consensus 644 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 722 (1102)
..|+++.+.+..|.++++|++|++++|++.+..+..+....++..+++.+ +++....+..|..+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------- 153 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence 56667666666666666666666666666655554555555555555544 333322223333322
Q ss_pred CCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccC
Q 001313 723 PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG 802 (1102)
Q Consensus 723 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 802 (1102)
..++.|++++|+++...+..+...+++++++.+++..+.+|...|.++++|++||+++|+++...+..+
T Consensus 154 ---------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-- 222 (350)
T 4ay9_X 154 ---------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-- 222 (350)
T ss_dssp ---------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred ---------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence 235555555555554444444555666666655444446887789999999999999999996554444
Q ss_pred CCCCCEEEccCccccccCchhhcCCCCCCEEECcCcc
Q 001313 803 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 839 (1102)
Q Consensus 803 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 839 (1102)
.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 456666665554444677 47889999999998654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.7e-19 Score=201.08 Aligned_cols=206 Identities=21% Similarity=0.180 Sum_probs=127.0
Q ss_pred cEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCC-CCcCCCCCCcE-EEc
Q 001313 614 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQG-LFL 691 (1102)
Q Consensus 614 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l 691 (1102)
++++.++++++ .||..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666554 2456666666666666555666667777777777776655444 35666666554 455
Q ss_pred cCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCc-ccccCCCCCCCCccccEEEccCcccccc
Q 001313 692 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN-NISGSLPSCYDFVCIEQVHLSKNMLHGQ 770 (1102)
Q Consensus 692 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~~~L~~L~l~~n~l~~~ 770 (1102)
+.|++++..|..|..+++|++|++++|++++..+..+....++..+++.++ ++. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence 566676666666677777777777777766555555555555666666442 332 3
Q ss_pred cCcccccCcc-CccEEEccCccCcccCCccccCCCCCCEEEccC-ccccccCchhhcCCCCCCEEECcCccCCCCCCccc
Q 001313 771 LKEGTFFNCL-TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH-NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 848 (1102)
Q Consensus 771 i~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 848 (1102)
++...|..+. .++.|++++|+++...+..| ...+|++|++++ |.++...+..|..+++|++|||++|+|+...+..|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 4444555543 47777888888775444333 446677777764 55554334567777788888888887775444333
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3e-19 Score=210.47 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=60.7
Q ss_pred CccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEcc
Q 001313 709 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 788 (1102)
Q Consensus 709 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls 788 (1102)
+++.|++++|.+++ +|..+ .++|+.|++++|+++ .+| ..+++|+.|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 67777777777765 45444 256777777777766 344 223455555555555554 443 222 45555555
Q ss_pred CccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCC
Q 001313 789 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 842 (1102)
Q Consensus 789 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 842 (1102)
+|++++ +|. .+++|+.|+|++|++++ +|. .+++|+.|+|++|++++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 555554 333 34455555555555543 333 34455555555555443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.9e-19 Score=182.43 Aligned_cols=176 Identities=24% Similarity=0.240 Sum_probs=143.3
Q ss_pred EEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCc
Q 001313 759 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 838 (1102)
Q Consensus 759 ~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 838 (1102)
.++.+++.++ .+|. .+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPT-GI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCC-CC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3444444443 3454 22 357889999999998877777888999999999999999777777888999999999999
Q ss_pred cCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCC
Q 001313 839 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 918 (1102)
Q Consensus 839 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 918 (1102)
++++..+..|.++. .|+.|+|++|+++
T Consensus 87 ~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT-----------------------------------------------------QLKELALNTNQLQ 113 (208)
T ss_dssp CCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCC
T ss_pred cCCccCHhHhcCcc-----------------------------------------------------CCCEEEcCCCcCc
Confidence 99877666665544 6889999999999
Q ss_pred CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCcccc
Q 001313 919 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA 998 (1102)
Q Consensus 919 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 998 (1102)
+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+.. +.|++|+++.|+++|.+|..++
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHCTTTBBCTTS
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhCCceeeccCc
Confidence 877777899999999999999999888888999999999999999888643 5788899999999999997444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=6.3e-19 Score=207.68 Aligned_cols=138 Identities=27% Similarity=0.359 Sum_probs=110.5
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccC
Q 001313 685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 764 (1102)
Q Consensus 685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~ 764 (1102)
+|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 78999999999886 676553 78999999999988 566 457889999999999987 666 322 899999999
Q ss_pred cccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC
Q 001313 765 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844 (1102)
Q Consensus 765 n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 844 (1102)
|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 99887 665 57889999999999986 555 57889999999999986 666 55 88888888888887 44
Q ss_pred Cc
Q 001313 845 PS 846 (1102)
Q Consensus 845 p~ 846 (1102)
|.
T Consensus 196 p~ 197 (571)
T 3cvr_A 196 PA 197 (571)
T ss_dssp CC
T ss_pred hh
Confidence 44
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=185.55 Aligned_cols=157 Identities=22% Similarity=0.252 Sum_probs=130.0
Q ss_pred cEEEccCccCcccCCccccCCCCCCEEEccCccccccCc-hhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313 783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861 (1102)
Q Consensus 783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 861 (1102)
+.+++++|.++. +|..+. ..+++|+|++|++++..| ..|..+++|+.|+|++|++++..|..|.++.
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------- 81 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence 467777777764 555443 356788888888887654 4577888888888888888877776666554
Q ss_pred CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313 862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 941 (1102)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 941 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 678889999999888888899999999999999999
Q ss_pred CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
++..|..|.++++|+.|+|++|+|++..|..|..+++|++|++++|+++|.++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999999999999998899999999999999999999987763
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=180.60 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=25.8
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCccc
Q 001313 685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 744 (1102)
Q Consensus 685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 744 (1102)
+|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 444444444444433333344444444444444444433333334444444444444443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.4e-18 Score=178.89 Aligned_cols=156 Identities=23% Similarity=0.272 Sum_probs=112.1
Q ss_pred cEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCC
Q 001313 783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS 862 (1102)
Q Consensus 783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 862 (1102)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|+.|+|++|++++..|..|.++.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 34566666655 3444333 4666677777766665556666677777777777777666666655543
Q ss_pred CCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC
Q 001313 863 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 942 (1102)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 942 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|+|+
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 5677777777777555556778888888888888888
Q ss_pred CCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCC
Q 001313 943 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 943 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 994 (1102)
+..|..|.++++|+.|+|++|+|++..+..+..+++|+.|++++|++.+.++
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8888888888888888888888887777778888888888888888877554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=5.6e-18 Score=177.45 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=121.0
Q ss_pred ccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861 (1102)
Q Consensus 782 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 861 (1102)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence 345666666665 4454433 6777777777777777777777777777888887777655555554443
Q ss_pred CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313 862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 941 (1102)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 941 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|+|
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 577888888888877777788888999999999999
Q ss_pred CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCc
Q 001313 942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 995 (1102)
Q Consensus 942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 995 (1102)
+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.|.++.
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 8 7788888899999999999999977777788899999999999999887764
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.6e-18 Score=195.51 Aligned_cols=181 Identities=25% Similarity=0.231 Sum_probs=157.6
Q ss_pred ccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcccc-CCCCCCEEEccCccccccCchhhcCCCCCCEEEC
Q 001313 757 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 835 (1102)
Q Consensus 757 L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 835 (1102)
-+.++++++.+.. +|. .+. ..++.|+|++|++++..+..+. ++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~~-iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3688999999874 776 333 4689999999999998888888 9999999999999999888889999999999999
Q ss_pred cCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCC
Q 001313 836 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 915 (1102)
Q Consensus 836 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 915 (1102)
++|++++..+..|.++. .|+.|+|++|
T Consensus 96 s~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N 122 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNN 122 (361)
T ss_dssp CSSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCC
Confidence 99999987777776554 6899999999
Q ss_pred CCCCCCcccccCCCcCCEEECCCCCCCCCCcccc---cCCCcCCEEeCCCCcCcccCchhhhcCCC--CCEEEcccCcCc
Q 001313 916 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF---SNLRNIESLDLSYNKLSWKIPYQLVELNT--LAVFSVAYNNLS 990 (1102)
Q Consensus 916 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~l~ls~N~l~ 990 (1102)
++++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.
T Consensus 123 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999889999999999999999999998777767 67999999999999999877778888887 488999999999
Q ss_pred ccCC
Q 001313 991 GKIP 994 (1102)
Q Consensus 991 ~~~p 994 (1102)
|.+.
T Consensus 203 C~C~ 206 (361)
T 2xot_A 203 CDCK 206 (361)
T ss_dssp CCHH
T ss_pred CCcC
Confidence 8654
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.3e-18 Score=177.82 Aligned_cols=157 Identities=22% Similarity=0.295 Sum_probs=141.7
Q ss_pred CEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccc
Q 001313 807 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE 886 (1102)
Q Consensus 807 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1102)
+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..|..++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~---------------------------------- 56 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK---------------------------------- 56 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence 57899999998 5676554 7899999999999987777776554
Q ss_pred eeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 887 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
.|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|+
T Consensus 57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 6899999999999999999999999999999999999888888999999999999999999
Q ss_pred ccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCCC
Q 001313 967 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 1019 (1102)
Q Consensus 967 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~~ 1019 (1102)
+..|..|..+++|++|++++|++++..+..+..+..+..+.+.+||+.|+|.+
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 99999999999999999999999998887677888889999999999998754
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.4e-18 Score=192.86 Aligned_cols=177 Identities=27% Similarity=0.253 Sum_probs=151.9
Q ss_pred cEEEccCcccccCCCCCCCCccccEEEccCcccccccCccccc-CccCccEEEccCccCcccCCccccCCCCCCEEEccC
Q 001313 735 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF-NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 813 (1102)
Q Consensus 735 ~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 813 (1102)
+.++++++.++. +|..+ ...++.|++++|++++ ++...|. ++++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 689999999885 55433 3468999999999986 4444787 899999999999999998888999999999999999
Q ss_pred ccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeecc
Q 001313 814 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 893 (1102)
Q Consensus 814 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1102)
|++++..+..|..+++|+.|+|++|++++..|..|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----------------------------------------- 136 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA----------------------------------------- 136 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence 999988888899999999999999999988888776654
Q ss_pred ceeeeccCCcCCCCceEECCCCCCCCCCcccc---cCCCcCCEEECCCCCCCCCCcccccCCCc--CCEEeCCCCcCcc
Q 001313 894 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI---GNLTKIQTLNLSHNNLAGPIPSTFSNLRN--IESLDLSYNKLSW 967 (1102)
Q Consensus 894 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~ 967 (1102)
.|+.|+|++|++++..+..| ..+++|+.|||++|+|++..+..|..++. ++.|+|++|.+..
T Consensus 137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 68999999999997555555 67999999999999999888888888887 4899999999985
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=174.33 Aligned_cols=137 Identities=19% Similarity=0.187 Sum_probs=116.9
Q ss_pred CccEEEccCccCcccCC-ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccC
Q 001313 781 TLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 859 (1102)
Q Consensus 781 ~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~ 859 (1102)
.+++|++++|++++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------- 105 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------- 105 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-------
Confidence 46788888888887654 4577888888888888888877777888888888888888888877777666554
Q ss_pred CCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC
Q 001313 860 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 939 (1102)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 939 (1102)
.|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 106 ----------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 106 ----------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp ----------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred ----------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 6888999999999888999999999999999999
Q ss_pred CCCCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313 940 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 970 (1102)
Q Consensus 940 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 970 (1102)
+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999999999999999999987655
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.6e-17 Score=171.30 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=140.6
Q ss_pred CCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccc
Q 001313 805 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI 884 (1102)
Q Consensus 805 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1102)
+-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|.++.
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------------- 64 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-------------------------------- 64 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence 3567999999998 6776553 8999999999999998888877654
Q ss_pred cceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCc
Q 001313 885 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 964 (1102)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 964 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 68999999999987777788999999999999999999888899999999999999999
Q ss_pred CcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 965 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 965 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
|+ .+|..+..+++|++|++++|++++..+..+..+..+..+.+.+||+.|.++
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 789999999999999999999998777667788888999999999999875
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=5.1e-20 Score=218.65 Aligned_cols=76 Identities=24% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCC-cccccCCCcCCEEeCCCCcCcccCchh---hhcCCCCCE
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIPYQ---LVELNTLAV 981 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~ 981 (1102)
.|+.|+|++|++++ +| .|+.+++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.. +..+++|++
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 34455555555554 44 5566666666666666666655 666666666666666666666544421 223556666
Q ss_pred EE
Q 001313 982 FS 983 (1102)
Q Consensus 982 l~ 983 (1102)
||
T Consensus 565 L~ 566 (567)
T 1dce_A 565 IL 566 (567)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.8e-17 Score=176.46 Aligned_cols=152 Identities=25% Similarity=0.343 Sum_probs=124.7
Q ss_pred cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 854 (1102)
Q Consensus 775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 854 (1102)
.+..+++|+.|++++|++++..+ +..+++|++|++++|++++ +| .+..+++|++|++++|++++. + .+..+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l~~l--- 133 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GLVHL--- 133 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GGGGC---
T ss_pred hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hhcCC---
Confidence 46778888889999888887554 8888999999999998885 33 488889999999999988753 2 22222
Q ss_pred ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEE
Q 001313 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 934 (1102)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L 934 (1102)
+.|+.|++++|++++. +.+..+++|++|
T Consensus 134 --------------------------------------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 134 --------------------------------------------------PQLESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp --------------------------------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred --------------------------------------------------CCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 2688899999999875 578899999999
Q ss_pred ECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 935 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 935 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
+|++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 999999997665 8999999999999999986 45 48899999999999999875
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.5e-17 Score=198.47 Aligned_cols=167 Identities=23% Similarity=0.310 Sum_probs=90.1
Q ss_pred CcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCC
Q 001313 638 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 717 (1102)
Q Consensus 638 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 717 (1102)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334444444443322 23455555555555555422 2 34555555555555555543322 44455555555555
Q ss_pred CcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC
Q 001313 718 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 797 (1102)
Q Consensus 718 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p 797 (1102)
|.+++. | .+..+++|+.|+|++|.++ + ++ .+..+++|+.|+|++|++++.
T Consensus 97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~-----------------------~-l~--~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 97 NKIKDL-S-SLKDLKKLKSLSLEHNGIS-----------------------D-IN--GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SCCCCC-T-TSTTCTTCCEEECTTSCCC-----------------------C-CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCCC-h-hhccCCCCCEEEecCCCCC-----------------------C-Cc--cccCCCccCEEECCCCccCCc--
Confidence 544431 1 3444444444444444433 2 22 456667777777777777654
Q ss_pred ccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCC
Q 001313 798 DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 842 (1102)
Q Consensus 798 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 842 (1102)
..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 456677777777777777775555 6667777777777776654
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.4e-17 Score=167.41 Aligned_cols=89 Identities=27% Similarity=0.376 Sum_probs=58.8
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|+.|||++|+|++.+|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 35555555555555556666666666666666666666666666666667777777777766666666666667777777
Q ss_pred cCcCcccCC
Q 001313 986 YNNLSGKIP 994 (1102)
Q Consensus 986 ~N~l~~~~p 994 (1102)
+|+++|.++
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 777766655
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5.3e-17 Score=164.83 Aligned_cols=176 Identities=22% Similarity=0.305 Sum_probs=126.7
Q ss_pred cEEEccCccCcccCCccccCCCCCCEEEccCccccccCch-hhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313 783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861 (1102)
Q Consensus 783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 861 (1102)
+.+++++|.++ .+|..+.. +|++|++++|++++..+. .|..+++|++|+|++|++++..|..|.++.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 56777777775 45654433 788888888888866654 478888888888888888888787776654
Q ss_pred CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313 862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 941 (1102)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 941 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|+|
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 678889999999888888899999999999999999
Q ss_pred CCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 942 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
++.+|..|..+++|+.|+|++|.+++..+.... ...++...+..+...+..|.. ++.....++..+.+.|..+
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH---HcCCChhhCcHhhcCcCCC
Confidence 999999999999999999999999987663211 011112233344455555542 2333334455566666544
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.3e-16 Score=173.64 Aligned_cols=172 Identities=26% Similarity=0.391 Sum_probs=115.6
Q ss_pred CCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhhcCCCcCEEEcCCCcccCCCChhhhccC
Q 001313 98 TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLARLSSLTSLDLSANRLKGSIDIKELDSL 177 (1102)
Q Consensus 98 ~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 177 (1102)
+.+++|++|++++|.+.... .+..+++|++|++++|.+++..+ ++++++|++|++++|.+.+ ...+..+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l 111 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDL 111 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTC
T ss_pred hhcCcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccC
Confidence 35667777777777765442 35667777777777777765333 7777777777777777764 2347777
Q ss_pred CCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhhccCCCcEEEccCCcCCCCCchhhccCCCCC
Q 001313 178 RDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLARLSSLRSLLLYDNRLEGSIDVKEFDSLSNL 257 (1102)
Q Consensus 178 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 257 (1102)
++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+. + .+..+++|
T Consensus 112 ~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L 180 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V--PLAGLTKL 180 (291)
T ss_dssp TTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGTTCTTC
T ss_pred CCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc-h--hhcCCCcc
Confidence 7777777777777664 3566777777777777777654 4677777777777777777632 3 26677777
Q ss_pred cEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccc
Q 001313 258 EELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTE 320 (1102)
Q Consensus 258 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 320 (1102)
++|++++|.+++. ..+..+++|+.|++++|++..
T Consensus 181 ~~L~L~~N~i~~l-----------------------------~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISDL-----------------------------RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCBC-----------------------------GGGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCCC-----------------------------hhhccCCCCCEEECcCCcccC
Confidence 7777777766532 124566777777777776654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.9e-17 Score=191.84 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=82.7
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccC
Q 001313 685 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 764 (1102)
Q Consensus 685 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~ 764 (1102)
.+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..| ...+++|+.|+|++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34445566666654333 45677788888888887643 3 47778888888888887775433 33445555555555
Q ss_pred cccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCC
Q 001313 765 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 844 (1102)
Q Consensus 765 n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 844 (1102)
|.+.+ +| .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..
T Consensus 97 N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKD-LS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCC-CT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCC-Ch--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 55543 22 344555555555555555432 2344455555555555555433 34445555555555555554433
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.6e-19 Score=212.56 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=130.5
Q ss_pred cCCCcccccCCCcccEEE-ccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCcc
Q 001313 721 EGPIPLEFCQLRILQILD-ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 799 (1102)
Q Consensus 721 ~~~~~~~~~~l~~L~~L~-ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 799 (1102)
.+.+|..+..+++|+.|+ ++.|.+. .|..+.+++|.+.+ +|. ..|+.|++++|.+++ +|.
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n~~~----------~L~~l~l~~n~i~~-l~~------~~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAAYLD----------DLRSKFLLENSVLK-MEY------ADVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHHHH----------HHHHHHHHHHHHHH-HHH------TTCSEEECTTSCCSS-CCC-
T ss_pred ccCCHHHHHHHHhcccCcchhhcccc----------hhhhhhhhcccccc-cCc------cCceEEEecCCCCCC-CcC-
Confidence 345666677777777777 5666543 45556666666653 332 248899999999996 566
Q ss_pred ccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCC
Q 001313 800 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD 879 (1102)
Q Consensus 800 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1102)
++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +| .+++++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~--------------------------- 508 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP--------------------------- 508 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS---------------------------
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC---------------------------
Confidence 899999999999999999 789999999999999999999987 56 555443
Q ss_pred ccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC-cccccCCCcCCEEECCCCCCCCCCccc---ccCCCcC
Q 001313 880 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNLSHNNLAGPIPST---FSNLRNI 955 (1102)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L 955 (1102)
.|+.|+|++|++++.+ |..|+.+++|+.|+|++|.+++.+|.. +..+++|
T Consensus 509 --------------------------~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 509 --------------------------RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp --------------------------SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred --------------------------CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 6899999999999887 999999999999999999999876643 3347889
Q ss_pred CEEeC
Q 001313 956 ESLDL 960 (1102)
Q Consensus 956 ~~L~L 960 (1102)
+.||+
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 99875
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.1e-16 Score=163.61 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=122.9
Q ss_pred ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 855 (1102)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence 356678888888888888 455 6788888999999888665 334788888999999999988876666665543
Q ss_pred cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935 (1102)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 935 (1102)
.|+.|+|++|++++..|..++.+++|++|+
T Consensus 113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 688899999999888888899999999999
Q ss_pred CCCCC-CCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 936 LSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 936 Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
|++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998 55 556 68889999999999999986 44 78888999999999998754
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.5e-16 Score=170.16 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=138.5
Q ss_pred ccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEE
Q 001313 755 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 834 (1102)
Q Consensus 755 ~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 834 (1102)
..+..+++++|.+++ ++ .+..+++|+.|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555555543 33 46788899999999999985 45 68889999999999999996555 89999999999
Q ss_pred CcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCC
Q 001313 835 LSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 914 (1102)
Q Consensus 835 Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 914 (1102)
+++|++++..+... ..|+.|+|++
T Consensus 92 L~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~ 115 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDN 115 (263)
T ss_dssp CCSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred CCCCccCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence 99999986322110 2689999999
Q ss_pred CCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCccc
Q 001313 915 NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 992 (1102)
Q Consensus 915 N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 992 (1102)
|++++. | .+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 116 N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 116 NELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999874 3 699999999999999999975 4 689999999999999999976 6788999999999999999876
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3e-17 Score=201.35 Aligned_cols=159 Identities=23% Similarity=0.271 Sum_probs=90.2
Q ss_pred ccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313 770 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849 (1102)
Q Consensus 770 ~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 849 (1102)
.+|. .+.++++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|+|++|.|+ .+|..|+
T Consensus 238 ~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 238 NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT
T ss_pred CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh
Confidence 4555 4447777888888888887 67777777888888888888887 66777888888888888888776 5566565
Q ss_pred cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313 850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 929 (1102)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~ 929 (1102)
+++ .|+.|+|++|.|++.+|..+..+.
T Consensus 314 ~l~-----------------------------------------------------~L~~L~L~~N~l~~~~p~~~~~~~ 340 (727)
T 4b8c_D 314 NLC-----------------------------------------------------NLQFLGVEGNPLEKQFLKILTEKS 340 (727)
T ss_dssp SCT-----------------------------------------------------TCCCEECTTSCCCSHHHHHHHHHH
T ss_pred cCC-----------------------------------------------------CccEEeCCCCccCCCChHHHhhcc
Confidence 544 577788888888877777765543
Q ss_pred c-CCEEECCCCCCCCCCcccccCCCcCCEEeCCCC--------cCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 930 K-IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN--------KLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 930 ~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
. +..|+|++|.++|.+|.. |+.|++++| .|.+..+..+.++..+....+++|-+.+
T Consensus 341 ~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 341 VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCCG
T ss_pred hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 2 234677888888777764 345556666 4444444555566666777777777754
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.4e-16 Score=159.00 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=91.0
Q ss_pred ccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccc
Q 001313 776 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 855 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 855 (1102)
+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~--- 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--- 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence 555666777777766554 234566677777777777777766666677777777777777777665555544333
Q ss_pred cccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEE
Q 001313 856 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 935 (1102)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~ 935 (1102)
.|+.|++++|++.+.+| .+..+++|+.|+
T Consensus 137 --------------------------------------------------~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 137 --------------------------------------------------KVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp --------------------------------------------------SCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred --------------------------------------------------CCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 56777777777334555 578888899999
Q ss_pred CCCCCCCCCCcccccCCCcCCEEeCCCCcCcc
Q 001313 936 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 967 (1102)
Q Consensus 936 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 967 (1102)
+++|.+++. + .+..+++|+.|++++|++.+
T Consensus 166 l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 166 IQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 999988863 3 68888889999999998764
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=3.9e-17 Score=200.39 Aligned_cols=226 Identities=21% Similarity=0.197 Sum_probs=112.0
Q ss_pred CccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEc
Q 001313 660 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 739 (1102)
Q Consensus 660 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 739 (1102)
+.++.|+|.+|.+... +.. .++.++|+.|.+.+ +++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 5567777777776642 222 23444444444332 122223332 33444555555555555
Q ss_pred cCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccccc
Q 001313 740 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE 819 (1102)
Q Consensus 740 s~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 819 (1102)
++|.+....+..+.+++|+.|+|++|.++ .+|. .|.++++|++|+|++|+|+ .+|..|+.+++|++|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 55555532223334555666666666665 6776 8899999999999999999 77999999999999999999998 7
Q ss_pred CchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeec
Q 001313 820 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 899 (1102)
Q Consensus 820 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1102)
+|..|..+++|++|+|++|++++.+|..+.....
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~---------------------------------------------- 341 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV---------------------------------------------- 341 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH----------------------------------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcch----------------------------------------------
Confidence 8888999999999999999999999988765431
Q ss_pred cCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCC--------CCCCCCcccccCCCcCCEEeCCCCcCccc
Q 001313 900 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN--------NLAGPIPSTFSNLRNIESLDLSYNKLSWK 968 (1102)
Q Consensus 900 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 968 (1102)
....++|++|.++|.+|.. |+.|++++| .+.+.++..+.++..++...+++|.+.+.
T Consensus 342 ------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 342 ------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ------HHHHHHHHHCCCCCCCCCC-----------------------------------------------CCCGG
T ss_pred ------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 1224789999999999974 456677777 56666677777888888899999998743
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1e-16 Score=178.43 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=109.5
Q ss_pred CCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCcc----CcccCCCCcCCCCC
Q 001313 610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH----FVGEIPQSLSKCSS 685 (1102)
Q Consensus 610 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~ 685 (1102)
+++|+.+++.+ +++ .|+...|.+|++|+.+++++|.+..+.+.+|.++.++..+.+..+. .......+|.++..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55555555555 454 4555555555555555555555555555555555555555444421 12222334555555
Q ss_pred Cc-EEEccCCcCCCCCCccc----cCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCC-CCccccE
Q 001313 686 LQ-GLFLSNNSLSGKIPRWL----GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQ 759 (1102)
Q Consensus 686 L~-~L~l~~n~l~~~~p~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~~~L~~ 759 (1102)
|+ .+.+.... .++..+ ....++..+.+.++-...........+++|+.+++++|+++...+..+ ++.+|++
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 55 33332211 111100 012223333333221100000000123444444444444442222222 2334444
Q ss_pred EEccCcccccccCcccccCccCcc-EEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEE
Q 001313 760 VHLSKNMLHGQLKEGTFFNCLTLM-ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 834 (1102)
Q Consensus 760 L~l~~n~l~~~i~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 834 (1102)
+++.+| +. .|+..+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 444443 22 46666788888887 888877 67766677888888888888888888766777788888887775
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.5e-16 Score=166.54 Aligned_cols=170 Identities=21% Similarity=0.282 Sum_probs=106.7
Q ss_pred ccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEcc
Q 001313 661 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 740 (1102)
Q Consensus 661 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 740 (1102)
+++.+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444444444444222 3444455555555555554 233 34455555555555555554333 5555555555555
Q ss_pred CcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccC
Q 001313 741 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 820 (1102)
Q Consensus 741 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 820 (1102)
+|++++ +|.... ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCcccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 555554 222222 556666666666654 33 578888999999999999865 3 688889999999999999866
Q ss_pred chhhcCCCCCCEEECcCccCCCCCC
Q 001313 821 PIQLCRLNQLQLLDLSNNNLHGHIP 845 (1102)
Q Consensus 821 p~~~~~l~~L~~L~Ls~N~l~~~~p 845 (1102)
..+..+++|+.|++++|++++...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -HHhccCCCCCEEeCCCCcccCCcc
Confidence 678889999999999999886643
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=6.7e-16 Score=171.79 Aligned_cols=76 Identities=14% Similarity=0.031 Sum_probs=52.3
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCC-EEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEE
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQ-TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 983 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 983 (1102)
.|+.|+|++| ++..-+.+|.++++|+ .+++++ .++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 4556666665 5444455677777777 777776 66666667777777777777777777766666777777777664
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.2e-14 Score=162.62 Aligned_cols=264 Identities=12% Similarity=0.073 Sum_probs=162.2
Q ss_pred CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEE
Q 001313 538 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 617 (1102)
Q Consensus 538 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 617 (1102)
..++.+.+.+ .++......|..+ +|+.+++..+ ++ .|+...|.. .+|+.+.+.. .+..+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4455555443 2333334445443 5677776655 43 555555554 4677777775 56656667777777777777
Q ss_pred ccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCC
Q 001313 618 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 697 (1102)
Q Consensus 618 Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 697 (1102)
+++|+++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+...+|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7777777 77777764 577777777633 66666667777777777777654 44444555655 567777663 3344
Q ss_pred CCCCccccCCCCccEEECCCCccc-----CCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccccC
Q 001313 698 GKIPRWLGNLTVLRHIIMPKNHIE-----GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 772 (1102)
Q Consensus 698 ~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~ 772 (1102)
..-+.+|.++++|+.+++.+|.+. .+.+.+|.+|++|+.+++.++ ++ .|+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~------------------------~I~ 315 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR------------------------ILG 315 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC------------------------EEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE------------------------EEh
Confidence 444556666666666666655543 233445555666665555522 22 455
Q ss_pred cccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC-CCCEEECcCccC
Q 001313 773 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNNL 840 (1102)
Q Consensus 773 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l 840 (1102)
..+|.+|++|+.+++..| ++.+.+.+|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 557777777777777544 555566677777 777777777777655566666663 566776665543
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=150.06 Aligned_cols=89 Identities=29% Similarity=0.307 Sum_probs=70.7
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 45556666666666666677788888888888888888888888888888888888888887666678888888899999
Q ss_pred cCcCcccCC
Q 001313 986 YNNLSGKIP 994 (1102)
Q Consensus 986 ~N~l~~~~p 994 (1102)
+|++.|.+.
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 998887654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.7e-15 Score=148.91 Aligned_cols=85 Identities=25% Similarity=0.212 Sum_probs=53.1
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCC-cccccCCCcCCEEeCCCCcCcccCc---hhhhcCCCCCE
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV 981 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 981 (1102)
.|+.|+|++|++++.+|..+..+++|++|+|++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 3555555555555555555555666666666666666532 2566666777777777777765444 35666677777
Q ss_pred EEcccCcCc
Q 001313 982 FSVAYNNLS 990 (1102)
Q Consensus 982 l~ls~N~l~ 990 (1102)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 777776664
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.5e-15 Score=147.28 Aligned_cols=138 Identities=23% Similarity=0.238 Sum_probs=120.5
Q ss_pred ccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccc
Q 001313 779 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 857 (1102)
Q Consensus 779 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 857 (1102)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----- 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence 478999999999998 78898899999999999999999966 7889999999999999999987777665443
Q ss_pred cCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCC-cccccCCCcCCEEEC
Q 001313 858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNL 936 (1102)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~L 936 (1102)
.|+.|+|++|++++.. +..+..+++|++|++
T Consensus 96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 6899999999998743 378999999999999
Q ss_pred CCCCCCCCCc---ccccCCCcCCEEeCCCCcCcccCchh
Q 001313 937 SHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPYQ 972 (1102)
Q Consensus 937 s~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 972 (1102)
++|.+++..+ ..|..+++|+.||+++|.+. .+|.+
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999997766 58999999999999999998 45543
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=145.65 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 45566666666665555556777778888888888887777777778888888888888876655556777888888888
Q ss_pred cCcCcccCCc
Q 001313 986 YNNLSGKIPE 995 (1102)
Q Consensus 986 ~N~l~~~~p~ 995 (1102)
+|++.|.+|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 8888877664
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=3.5e-15 Score=144.72 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCC-CcccccCCCcCCEEeCCCCcCcccCc---hhhhcCCCCCE
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV 981 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~ 981 (1102)
.|+.|+|++|.+++.+|..+..+++|++|++++|.+++. .|..++.+++|+.|++++|++++..+ ..+..+++|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 456666666666666677677777888888888888763 34777888888888888888886655 46777888888
Q ss_pred EEcc
Q 001313 982 FSVA 985 (1102)
Q Consensus 982 l~ls 985 (1102)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 8775
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=5.9e-14 Score=159.06 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=42.6
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCee
Q 001313 586 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 665 (1102)
Q Consensus 586 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 665 (1102)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .|+...|.++ +|+.+.+.. .++.+...+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 45666666654 3444555666664 5777776655 44 5665555443 455555543 3443334444444444444
Q ss_pred eccCccCc
Q 001313 666 QLEGNHFV 673 (1102)
Q Consensus 666 ~L~~n~l~ 673 (1102)
++.+|.++
T Consensus 186 ~l~~n~l~ 193 (401)
T 4fdw_A 186 DLSKTKIT 193 (401)
T ss_dssp ECTTSCCS
T ss_pred ecCCCcce
Confidence 44444443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=146.02 Aligned_cols=129 Identities=28% Similarity=0.375 Sum_probs=111.1
Q ss_pred cEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCCC
Q 001313 783 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS 862 (1102)
Q Consensus 783 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 862 (1102)
+.+++++|.++ .+|..+. ++|++|+|++|+++ .+|..|..+++|+.|+|++|++++..|..|.++.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~---------- 78 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT---------- 78 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT----------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC----------
Confidence 56788888887 4565443 57889999999998 6778899999999999999999988777776655
Q ss_pred CCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCC
Q 001313 863 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA 942 (1102)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 942 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|.|+
T Consensus 79 -------------------------------------------~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 79 -------------------------------------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp -------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 6889999999999888889999999999999999999
Q ss_pred CCCcccccCCCcCCEEeCCCCcCccc
Q 001313 943 GPIPSTFSNLRNIESLDLSYNKLSWK 968 (1102)
Q Consensus 943 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ 968 (1102)
+..+..|..+++|+.|+|++|.+.+.
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eeChhhhhcCccccEEEeCCCCeecC
Confidence 88888899999999999999999853
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.3e-15 Score=144.08 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=100.6
Q ss_pred ccCccEEEccCccCc-ccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccc
Q 001313 779 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 857 (1102)
Q Consensus 779 ~~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 857 (1102)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP----- 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence 356778888888877 67777777788888888888888755 6677788888888888888776666554433
Q ss_pred cCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCC-CcccccCCCcCCEEEC
Q 001313 858 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH-IPPQIGNLTKIQTLNL 936 (1102)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~L~L 936 (1102)
.|+.|++++|++++. .|..++.+++|++|++
T Consensus 89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 577888888888763 4477888999999999
Q ss_pred CCCCCCCCCc---ccccCCCcCCEEeCCC
Q 001313 937 SHNNLAGPIP---STFSNLRNIESLDLSY 962 (1102)
Q Consensus 937 s~N~l~~~~p---~~~~~l~~L~~L~Ls~ 962 (1102)
++|.+++..+ ..++.+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998776 6788899999999874
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=3.2e-14 Score=142.44 Aligned_cols=133 Identities=25% Similarity=0.262 Sum_probs=105.1
Q ss_pred ccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccccccccccccCCC
Q 001313 782 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 861 (1102)
Q Consensus 782 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 861 (1102)
.+.+++++|+++. +|..+ .++|+.|++++|++++..+..|..+++|++|++++|++++..+..|.++.
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------- 76 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence 3566777777763 44333 25788888888888866666778888888888888888766665555443
Q ss_pred CCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCcCCEEECCCCCC
Q 001313 862 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL 941 (1102)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 941 (1102)
.|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 678888999999887777789999999999999999
Q ss_pred CCCCcccccCCCcCCEEeCCCCcCcccCc
Q 001313 942 AGPIPSTFSNLRNIESLDLSYNKLSWKIP 970 (1102)
Q Consensus 942 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 970 (1102)
++..+..|..+++|+.|+|++|.+.+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 98888788999999999999999998765
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.1e-13 Score=157.96 Aligned_cols=245 Identities=15% Similarity=0.136 Sum_probs=124.2
Q ss_pred CCchhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCccccccc
Q 001313 578 IPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 657 (1102)
Q Consensus 578 ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 657 (1102)
|....|..+.+|+.+.+.. .++.+-..+|.+|++|+.+++.++ ++ .|+...|.++.+|+.+.+..+ +..+...+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 3333344455555555543 244444455555555665555433 33 455555555555555544432 3333334444
Q ss_pred CCCccCeeeccCccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEE
Q 001313 658 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 737 (1102)
Q Consensus 658 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 737 (1102)
++..++...... .......+|.+|++|+.+.+.++.. ......|.++++|+.+.+..+ ++.+...+|.++..|+.+
T Consensus 138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 443322222211 1122334566666677766654432 244455666666766666554 333444566666666666
Q ss_pred EccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCcccc
Q 001313 738 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 817 (1102)
Q Consensus 738 ~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 817 (1102)
.+..+... .-...+....|+.+.+....- .+...+|.++..++.+.+..+... .....|..+..++.+....+.+
T Consensus 214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 214 EFPNSLYY-LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CCCTTCCE-ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred ecCCCceE-eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence 66554322 111223344555555543321 344456667777777777655432 4455666666666666655432
Q ss_pred ccCchhhcCCCCCCEEECcC
Q 001313 818 GEVPIQLCRLNQLQLLDLSN 837 (1102)
Q Consensus 818 ~~~p~~~~~l~~L~~L~Ls~ 837 (1102)
....|..+.+|+.+.+.+
T Consensus 289 --~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp --CTTTTTTCTTCCEEEECT
T ss_pred --cccccccccccccccccc
Confidence 223455666666666544
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=3.4e-13 Score=153.92 Aligned_cols=330 Identities=14% Similarity=0.136 Sum_probs=163.3
Q ss_pred hhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCCcEEEccCCcccccCCcccCCC
Q 001313 531 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNM 610 (1102)
Q Consensus 531 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 610 (1102)
...|.++++|+++.+.+ .++......|..+.+|+.+++..+ ++ .|+...+..+++|+.+.+..+ +..+...+|.++
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 33355566666666653 244444555556666666666543 32 444455544555655555433 333444455555
Q ss_pred CCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEE
Q 001313 611 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 690 (1102)
Q Consensus 611 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 690 (1102)
..+........ . .+....|.+|.+|+.+.+.++ +..+....|.++++|+.+.+..+ ++.....+|.++..|+.+.
T Consensus 140 ~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred cccccccCccc--c-ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 43333222221 1 344445555666666666433 23344445555666666665544 3333444555566665555
Q ss_pred ccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCCCCCCCccccEEEccCcccccc
Q 001313 691 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 770 (1102)
Q Consensus 691 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~ 770 (1102)
+..+... +.........|+.+.+... ++......|..+..++.+.+..+.. .
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-------------------------~ 266 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-------------------------R 266 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-------------------------E
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-------------------------e
Confidence 5444322 1222223344555555332 2222233445555555555544322 2
Q ss_pred cCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccc
Q 001313 771 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 850 (1102)
Q Consensus 771 i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 850 (1102)
++...|.++..++.+....+.+ ....|.++.+|+.+.+.++ ++.....+|.++++|+.+++.++ ++..-..+|.+
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 3333555555555555544332 2234555556666655443 44344455666666666666433 33333334443
Q ss_pred ccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCCc
Q 001313 851 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK 930 (1102)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~~ 930 (1102)
++ .|+.+++..| ++..-..+|.++++
T Consensus 342 c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 342 CT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp CT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTTCTT
T ss_pred CC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhCCCC
Confidence 32 3555555544 44334456777778
Q ss_pred CCEEECCCCCCCCCCcccccCCCcCCEE
Q 001313 931 IQTLNLSHNNLAGPIPSTFSNLRNIESL 958 (1102)
Q Consensus 931 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 958 (1102)
|+.+++..+ ++ .+..+|.+.++|+.+
T Consensus 368 L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 888877655 33 345667777777654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=7.1e-16 Score=157.58 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=114.9
Q ss_pred ccCccCccEEEccCccCcccCCc------cccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCcccc
Q 001313 776 FFNCLTLMILDLSYNHLNGNIPD------RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 849 (1102)
Q Consensus 776 ~~~~~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 849 (1102)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44455677777777777777776 78888888888888888886 66 7888888888888888887 4454333
Q ss_pred cccccccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcccccCCC
Q 001313 850 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 929 (1102)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~l~ 929 (1102)
.++ .|+.|+|++|++++ +| .+..++
T Consensus 91 ~~~-----------------------------------------------------~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 91 VAD-----------------------------------------------------TLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp HHH-----------------------------------------------------HCSEEEEEEEECCC-HH-HHHHHH
T ss_pred cCC-----------------------------------------------------cCCEEECcCCcCCc-CC-ccccCC
Confidence 222 57788888888876 45 577888
Q ss_pred cCCEEECCCCCCCCCCc-ccccCCCcCCEEeCCCCcCcccCchh----------hhcCCCCCEEEcccCcCc
Q 001313 930 KIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIPYQ----------LVELNTLAVFSVAYNNLS 990 (1102)
Q Consensus 930 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~l~ls~N~l~ 990 (1102)
+|++|+|++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|++|| .|+++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888885433 46788888888888888888776653 67788888776 55554
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.2e-13 Score=134.76 Aligned_cols=90 Identities=21% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 68899999999999999999999999999999999999988899999999999999999998878789999999999999
Q ss_pred cCcCcccCCc
Q 001313 986 YNNLSGKIPE 995 (1102)
Q Consensus 986 ~N~l~~~~p~ 995 (1102)
+|++.+.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999998775
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1e-13 Score=138.53 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=57.4
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcc--cccCCCcCCEEeCCCCcCcccCchh----hhcCCCC
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS--TFSNLRNIESLDLSYNKLSWKIPYQ----LVELNTL 979 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L 979 (1102)
.|+.|+|++|++++..|..|..+++|++|+|++|.|+ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 4555666666665443344567777777778777775 4454 6777788888888888887 44553 7778888
Q ss_pred CEEEcccCcCcc
Q 001313 980 AVFSVAYNNLSG 991 (1102)
Q Consensus 980 ~~l~ls~N~l~~ 991 (1102)
++||++.|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 888888877653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.7e-13 Score=135.43 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=111.1
Q ss_pred cccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCCCCCEEECcCccCCCCCCccccccccc
Q 001313 775 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 854 (1102)
Q Consensus 775 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 854 (1102)
.+.++.+|+.|++++|+++. +|......++|++|++++|++++. ..+..+++|++|++++|.+++..|..|..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-- 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence 57788999999999999985 455433345999999999999965 6788999999999999999876555555443
Q ss_pred ccccCCCCCCCccchhhhcCCccCCccccccceeeeeccceeeeccCCcCCCCceEECCCCCCCCCCcc--cccCCCcCC
Q 001313 855 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP--QIGNLTKIQ 932 (1102)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~ 932 (1102)
.|+.|+|++|+++ .+|. .+..+++|+
T Consensus 89 ---------------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 89 ---------------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp ---------------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred ---------------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 6899999999995 5666 788999999
Q ss_pred EEECCCCCCCCCCcc----cccCCCcCCEEeCCCCcCcc
Q 001313 933 TLNLSHNNLAGPIPS----TFSNLRNIESLDLSYNKLSW 967 (1102)
Q Consensus 933 ~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~ 967 (1102)
.|++++|.++. +|. .+..+++|+.||+++|.+..
T Consensus 117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999984 455 48899999999999998763
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=6.1e-13 Score=132.01 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=83.8
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|.++++|+.|||++|+|++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 68899999999999999999999999999999999998888889999999999999999998777779999999999999
Q ss_pred cCcCcccCCc
Q 001313 986 YNNLSGKIPE 995 (1102)
Q Consensus 986 ~N~l~~~~p~ 995 (1102)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987664
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=8.5e-13 Score=130.55 Aligned_cols=109 Identities=24% Similarity=0.282 Sum_probs=99.4
Q ss_pred CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 986 (1102)
Q Consensus 907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 986 (1102)
.+.+++++|+++. +|..+. ++|++|+|++|+|++..|..|.++++|+.|||++|+|++..|..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4789999999985 777664 8999999999999999999999999999999999999988888889999999999999
Q ss_pred CcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 987 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 987 N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
|++++..|..+..+..+..+.+.+||+.|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99998877767888899999999999999874
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=1.8e-12 Score=128.54 Aligned_cols=108 Identities=22% Similarity=0.257 Sum_probs=97.7
Q ss_pred ceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcccC
Q 001313 908 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 987 (1102)
Q Consensus 908 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 987 (1102)
+.+++++|+++ .+|..+. ++|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999996 6787775 89999999999999999999999999999999999999877777899999999999999
Q ss_pred cCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 988 NLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 988 ~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
++++..+..+..+..+..+.+.+|++.|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9998777657788889999999999999864
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.5e-14 Score=147.77 Aligned_cols=153 Identities=27% Similarity=0.276 Sum_probs=98.0
Q ss_pred CCccCeeeccCccCcccCCC------CcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCC
Q 001313 659 LTNLIWLQLEGNHFVGEIPQ------SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 732 (1102)
Q Consensus 659 l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 732 (1102)
...++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34445555555555544443 55555666666666666653 44 5555555666666665555 3444444445
Q ss_pred cccEEEccCcccccCCCCCCCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCC-ccccCCCCCCEEEc
Q 001313 733 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLIL 811 (1102)
Q Consensus 733 ~L~~L~ls~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L 811 (1102)
+|+.|++++|+++ + +| .+..+++|++|++++|++++..+ ..+..+++|++|++
T Consensus 94 ~L~~L~L~~N~l~-----------------------~-l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 94 TLEELWISYNQIA-----------------------S-LS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HCSEEEEEEEECC-----------------------C-HH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred cCCEEECcCCcCC-----------------------c-CC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 5555555555554 2 33 46677888888888888875433 46788899999999
Q ss_pred cCccccccCchh----------hcCCCCCCEEECcCccCCC
Q 001313 812 AHNNLEGEVPIQ----------LCRLNQLQLLDLSNNNLHG 842 (1102)
Q Consensus 812 ~~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~ 842 (1102)
++|++++.+|.. +..+++|+.|| +|.++.
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999988776653 78899999987 676653
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=5.5e-11 Score=135.58 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=43.8
Q ss_pred CceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEccc
Q 001313 907 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY 986 (1102)
Q Consensus 907 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 986 (1102)
|+.++|..+ ++..-..+|.++++|+.+.+..+ ++.+-..+|.++++|+.+++.+|.... ..+...+.|+.+.+..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 444444432 33233456777788888888654 665667788888888888888876542 3556667777776665
Q ss_pred CcC
Q 001313 987 NNL 989 (1102)
Q Consensus 987 N~l 989 (1102)
|.+
T Consensus 388 ~~~ 390 (394)
T 4gt6_A 388 GSI 390 (394)
T ss_dssp ---
T ss_pred CCE
Confidence 543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=8.2e-11 Score=134.16 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=68.4
Q ss_pred hhcC-CCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCc---CCCCCCchhhhcCCCCcEEEccCCcccccCCcccCC
Q 001313 534 LENN-TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN---FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 609 (1102)
Q Consensus 534 ~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~---l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 609 (1102)
|.++ ..|+.+.+.+. ++......|.++.+|+.+.+..|. ++ .|....|..+.+|+.+.+..+ ++.+...+|.+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 3344 24566655442 444444455555555555555432 22 344444444555555544432 33344445555
Q ss_pred CCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEE
Q 001313 610 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL 689 (1102)
Q Consensus 610 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 689 (1102)
+.+|+.+.+..+ ++ .++...|..+.+|+.+.+..+ ++.+...+|. ..+|+.+.+..+.. .....+|..+.+++..
T Consensus 136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTI 210 (394)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEE
T ss_pred hcccccccccce-ee-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhcccccee
Confidence 555555555432 22 444555555555555555433 3333333332 23455554443321 1233344444444444
Q ss_pred Ecc
Q 001313 690 FLS 692 (1102)
Q Consensus 690 ~l~ 692 (1102)
...
T Consensus 211 ~~~ 213 (394)
T 4gt6_A 211 TSD 213 (394)
T ss_dssp EEC
T ss_pred ccc
Confidence 443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.4e-11 Score=138.15 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=89.6
Q ss_pred CCceEECCC-CCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEc
Q 001313 906 LLSGLDLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 984 (1102)
Q Consensus 906 ~L~~L~Ls~-N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 984 (1102)
.|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 689999996 999998889999999999999999999999999999999999999999999987776776666 999999
Q ss_pred ccCcCcccCCccccccCCC---CccccCCCCCCCCCC
Q 001313 985 AYNNLSGKIPERAAQFATF---NESSYEGNPFLCGPP 1018 (1102)
Q Consensus 985 s~N~l~~~~p~~~~~~~~~---~~~~~~gN~~lC~~~ 1018 (1102)
++|++.+.++- .+|..+ ....+..+.+.|..+
T Consensus 111 ~~N~~~c~c~l--~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCAL--RWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGG--HHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCcc--HHHHHHHHhCcccccccCCCCCCC
Confidence 99999986552 333222 222334456677543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=3.1e-11 Score=135.36 Aligned_cols=108 Identities=17% Similarity=0.261 Sum_probs=96.7
Q ss_pred ceEECCCC-CCCCCCcccccCCCcCCEEECCC-CCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCCCCCEEEcc
Q 001313 908 SGLDLSCN-RLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 985 (1102)
Q Consensus 908 ~~L~Ls~N-~l~~~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 985 (1102)
..++++++ +|++ +|. |..+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++.+|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 8884 888 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCccccccCCCCccccCCCCCCCCCC
Q 001313 986 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 1018 (1102)
Q Consensus 986 ~N~l~~~~p~~~~~~~~~~~~~~~gN~~lC~~~ 1018 (1102)
+|+|++..|..+..+. +..+.+.+|++.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999987666444444 7888899999999875
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=4.6e-12 Score=142.05 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCCCEEeCCCCCCCCcccchhhhhhcC-CCCCcEEeCCCCcCCcchhHhhh-cCCCcCEEEcCCCccc
Q 001313 101 QQLESLDLRDNDIAGCVENEGLERLSR-LSNLKMLNLVGNLFNNSILSSLA-RLSSLTSLDLSANRLK 166 (1102)
Q Consensus 101 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~ 166 (1102)
++|++|+|++|.++..........+.. .++|++|+|++|.+++.....+. .+++|++|+|++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 445556665555543322111122221 24555555555555433222222 2345555555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=9.8e-12 Score=139.40 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCCCccc-ccccccC-CCCCCCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCcCCcchhHhhh--
Q 001313 75 RVVVLDLSQTHRGEYW-YLNASLF-TPFQQLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNLFNNSILSSLA-- 150 (1102)
Q Consensus 75 ~v~~L~L~~~~~~~~~-~~~~~~~-~~~~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~-- 150 (1102)
+++.++|+++.+.... ..-...+ ...++|++|+|++|.++....... ...+++|++|+|++|.+++.....++
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l---~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL---LPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT---HHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH---HHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4666677666443211 0001111 123567777777776643222111 11234667777777766644333332
Q ss_pred ---cCCCcCEEEcCCCcccCCCCh----hhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhh-
Q 001313 151 ---RLSSLTSLDLSANRLKGSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSI- 222 (1102)
Q Consensus 151 ---~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~- 222 (1102)
..++|++|+|++|.++.. .. ..+..+++|++|+|++|.+........+..+..+++|++|+|++|.+++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAA-GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHH-HHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChH-HHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 346666666666665421 11 222445556666666666554332222234445555666666666555422
Q ss_pred ---hHhhhccCCCcEEEccCCcCC
Q 001313 223 ---LSSLARLSSLRSLLLYDNRLE 243 (1102)
Q Consensus 223 ---~~~l~~l~~L~~L~L~~n~l~ 243 (1102)
+..+...++|++|+|++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 223334455555555555543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.04 E-value=1.7e-08 Score=114.44 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCceEECCCCCCCCCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCcccCchhhhcCC
Q 001313 906 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 977 (1102)
Q Consensus 906 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 977 (1102)
.|+.+++.++.++..-..+|.++++|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++..-..+|.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3555555555555444456667777777777544 55555667777777777777654 4433344555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=2.6e-08 Score=112.91 Aligned_cols=313 Identities=10% Similarity=0.057 Sum_probs=157.7
Q ss_pred cCCCcccEEEeccccCCCCCChhhhhcCCCCcEEEccCCCCcCCCcCCCCCCCCcCEEEccCCcCCCCCCchhhhcCCCC
Q 001313 510 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRL 589 (1102)
Q Consensus 510 ~~~~~L~~L~ls~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L 589 (1102)
....+|+.+.+... ...+++..|.+|++|+.+.+.++ ++......|..+ +|+.+.+..+ ++ .|....+. ..+|
T Consensus 43 ~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~L 115 (379)
T 4h09_A 43 KDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTDL 115 (379)
T ss_dssp GGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCCC
T ss_pred ccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCCc
Confidence 33445555555432 12344444556666666666543 444444445444 4555554432 22 34444444 2356
Q ss_pred cEEEccCCcccccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEccccccCCcccccccCCCccCeeeccC
Q 001313 590 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 669 (1102)
Q Consensus 590 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 669 (1102)
+.+.+..+ +..+...+|.++ +++...+..+ ++ .+....|..+..++...+..+........... .
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-----------~ 180 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-----------Y 180 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------E
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee-----------c
Confidence 66665543 222333344443 3444444332 22 34444444555555555544332111100000 0
Q ss_pred ccCcccCCCCcCCCCCCcEEEccCCcCCCCCCccccCCCCccEEECCCCcccCCCcccccCCCcccEEEccCcccccCCC
Q 001313 670 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 749 (1102)
Q Consensus 670 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 749 (1102)
+. .......+..+..+..+.+....- ......+..+..|+.+.+..+ ++.....+|.++..|+.+.+..+ ++..-.
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 181 NK-NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ET-TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred cc-ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 00 001111223333444443332221 123334444555555555433 22233344555555555555443 221111
Q ss_pred CC-CCCccccEEEccCcccccccCcccccCccCccEEEccCccCcccCCccccCCCCCCEEEccCccccccCchhhcCCC
Q 001313 750 SC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN 828 (1102)
Q Consensus 750 ~~-~~~~~L~~L~l~~n~l~~~i~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 828 (1102)
.. .++.+++.+.+..+ +. .++..+|.+|++|+.+++.++.++.+.+.+|.++.+|+.+.|..+ ++.....+|.+|+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 11 13445555555433 22 466668899999999999888888777788999999999999754 6655667889999
Q ss_pred CCCEEECcCccCCCCCCccccccc
Q 001313 829 QLQLLDLSNNNLHGHIPSCFDNTT 852 (1102)
Q Consensus 829 ~L~~L~Ls~N~l~~~~p~~~~~~~ 852 (1102)
+|+.+.+..+ ++..-..+|.+..
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEECCc-cCEEchhHhhCCC
Confidence 9998888654 5544556666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=2.9e-08 Score=109.93 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=41.7
Q ss_pred CccccEEEccCcccccccCcccc---cCccCccEEEccCccCccc----CCccccCCCCCCEEEccCccccccCchhhcC
Q 001313 754 FVCIEQVHLSKNMLHGQLKEGTF---FNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 826 (1102)
Q Consensus 754 ~~~L~~L~l~~n~l~~~i~~~~~---~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 826 (1102)
+++|+.|++.+|.+.+..+. .+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 34555555555544432211 11 1355667777766666653 2223344566667777666665433333332
Q ss_pred -CCCCCEEECcCcc
Q 001313 827 -LNQLQLLDLSNNN 839 (1102)
Q Consensus 827 -l~~L~~L~Ls~N~ 839 (1102)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456666654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=4.7e-09 Score=109.86 Aligned_cols=83 Identities=25% Similarity=0.271 Sum_probs=52.4
Q ss_pred hcCCCcCEEEcCCCcccCCCC-hhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhh-----
Q 001313 150 ARLSSLTSLDLSANRLKGSID-IKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSIL----- 223 (1102)
Q Consensus 150 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~----- 223 (1102)
.++++|++|+|++|++.+..+ +..+..+++|++|+|++|.+.+... ...+..+ +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~---l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE---LDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG---GGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh---hhhcccC-CcceEEccCCcCccccCcchhH
Confidence 567788888888888775311 1345677777777777777776521 1223333 77777777777765332
Q ss_pred --HhhhccCCCcEEE
Q 001313 224 --SSLARLSSLRSLL 236 (1102)
Q Consensus 224 --~~l~~l~~L~~L~ 236 (1102)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 3456667777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=1.2e-07 Score=94.52 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred hhcCCCCCcEEeCCCC-cCCcc----hhHhhhcCCCcCEEEcCCCcccCCCC---hhhhccCCCCcEEEcCCCcCCcccc
Q 001313 124 RLSRLSNLKMLNLVGN-LFNNS----ILSSLARLSSLTSLDLSANRLKGSID---IKELDSLRDLEKLNIGRNMIDKFVV 195 (1102)
Q Consensus 124 ~l~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~ 195 (1102)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+..... ...+...++|++|+|++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445555666666655 55432 33444455666666666665542100 1122333455555555555544322
Q ss_pred cCCccccCCCCCcCEEEc--CCCcCChhhh----HhhhccCCCcEEEccCCcC
Q 001313 196 SKGPKRLSRLNNLKVFDL--SGNLFNNSIL----SSLARLSSLRSLLLYDNRL 242 (1102)
Q Consensus 196 ~~~~~~l~~l~~L~~L~L--s~n~l~~~~~----~~l~~l~~L~~L~L~~n~l 242 (1102)
......+...+.|++|+| ++|.++.... ..+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 222244455556666666 5566554322 2233334555555555443
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=3.7e-07 Score=101.07 Aligned_cols=142 Identities=23% Similarity=0.250 Sum_probs=73.9
Q ss_pred hhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCChhhhHhhh--ccCCCcEEEccC--CcCCCCCch
Q 001313 173 ELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFNNSILSSLA--RLSSLRSLLLYD--NRLEGSIDV 248 (1102)
Q Consensus 173 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~~~~ 248 (1102)
.+..+++|+.|+++++.-... ..+ .+++|++|++..|.++......++ .+++|++|+|+. +...+....
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI------GKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC------CSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHhcCCCCcEEEEeCCCCcee------ccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 345556666666665521111 112 267777777777777665555554 677888887753 221111100
Q ss_pred ----hhc--cCCCCCcEEecccCccCCcchhhhhccccccceeccccccccCchhhhhhcCCCCCCCEEeCCCCCccccc
Q 001313 249 ----KEF--DSLSNLEELDMSYNEIDNFEVPQACSGLRKLSYLHLLRVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTETV 322 (1102)
Q Consensus 249 ----~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~ 322 (1102)
..+ ..+++|++|++.+|.+.+.....+ .....+|+|++|+|+.|.+....
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l------------------------a~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF------------------------LESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH------------------------HHCSSGGGCSEEECCSSCCBHHH
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH------------------------HhCccCCCCCEEECCCCCCChHH
Confidence 012 246778888877776653211111 11124566666666666654422
Q ss_pred c-ccccccccccccceeecccchh
Q 001313 323 T-TTTQGFPHFKSLKELYMDDARI 345 (1102)
Q Consensus 323 ~-~~~~~~~~l~~L~~L~l~~~~~ 345 (1102)
. .....+..+++|+.|+++.|.+
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHhhcccCCcceEEECCCCcC
Confidence 1 1122334566677777766643
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=4.7e-07 Score=90.33 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=26.5
Q ss_pred chhHhhhcCCCcCEEEcCCC-cccCCCCh----hhhccCCCCcEEEcCCCcCCc
Q 001313 144 SILSSLARLSSLTSLDLSAN-RLKGSIDI----KELDSLRDLEKLNIGRNMIDK 192 (1102)
Q Consensus 144 ~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~ 192 (1102)
.+...+...++|++|+|++| .+... .. ..+...++|++|+|++|.+..
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 44566777788888888887 66521 11 122334445555555544443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.3e-06 Score=91.38 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCcCCEEECCCCCCCC--CCcccccCCCcCCEEeCCCCcCcccCchhhhcCC--CCCEEEcccCcCcccCC
Q 001313 928 LTKIQTLNLSHNNLAG--PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN--TLAVFSVAYNNLSGKIP 994 (1102)
Q Consensus 928 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~l~ls~N~l~~~~p 994 (1102)
+++|++|+||+|+|++ .+|..+..+++|+.|||++|+|++. ..+..+. .|+.|++++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3444445555554444 2233344444455555555554432 1222222 44555555555544443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=8e-06 Score=78.80 Aligned_cols=59 Identities=17% Similarity=0.366 Sum_probs=36.8
Q ss_pred CCCEEeCCCCCCCCcccchhhhhhcCCCCCcEEeCCCCc-CCcchhHhhhcC----CCcCEEEcCCCc
Q 001313 102 QLESLDLRDNDIAGCVENEGLERLSRLSNLKMLNLVGNL-FNNSILSSLARL----SSLTSLDLSANR 164 (1102)
Q Consensus 102 ~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l~~l----~~L~~L~Ls~n~ 164 (1102)
.|++||+++|.++ +.++..+..+++|++|+|++|. +++.-...++.+ ++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~It----d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 62 KIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CEEEEEEESCCCC----GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred eEeEEeCcCCCcc----HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 5677777777643 3345666677777777777764 665555555554 356666666664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.4e-05 Score=77.14 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=42.5
Q ss_pred CCcCEEEcCCCcccCCCChhhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCc-CChhhhHhhhcc--
Q 001313 153 SSLTSLDLSANRLKGSIDIKELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNL-FNNSILSSLARL-- 229 (1102)
Q Consensus 153 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-- 229 (1102)
.+|++||+++|.++.. ....+ .++++|++|+|++|. +++.....++.+
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L----------------------------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~ 111 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHM----------------------------EGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGG----------------------------TTCSCCCEEEEESCTTCCHHHHHHHHTCHH
T ss_pred ceEeEEeCcCCCccHH-HHHHh----------------------------cCCCCCCEEEeCCCCccCHHHHHHHHhccc
Confidence 4677888887776532 23333 445555555555542 444444444442
Q ss_pred --CCCcEEEccCCc-CCCCCchhhccCCCCCcEEecccCc
Q 001313 230 --SSLRSLLLYDNR-LEGSIDVKEFDSLSNLEELDMSYNE 266 (1102)
Q Consensus 230 --~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~ 266 (1102)
++|++|+|++|. ++ ......+..+++|++|++++|.
T Consensus 112 ~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 112 LQKSMLEMEIISCGNVT-DKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHCCEEEEESCTTCC-HHHHHHGGGCTTCCEEEEESCT
T ss_pred ccCCCCEEEcCCCCcCC-HHHHHHHhcCCCCCEEECCCCC
Confidence 245555555553 22 2222234455555555555553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=0.00018 Score=70.72 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=40.2
Q ss_pred cCCCCCcEEeCCCC-cCCc----chhHhhhcCCCcCEEEcCCCcccCCC---ChhhhccCCCCcEEEcCCCcCCcccccC
Q 001313 126 SRLSNLKMLNLVGN-LFNN----SILSSLARLSSLTSLDLSANRLKGSI---DIKELDSLRDLEKLNIGRNMIDKFVVSK 197 (1102)
Q Consensus 126 ~~l~~L~~L~Ls~n-~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~ 197 (1102)
.+-+.|++|+|+++ .+.. .+...+..-+.|++|+|++|++.... -.+.+..-+.|++|+|++|.|.......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455555555553 4442 23344444555666666666554210 0112223344444444444444333222
Q ss_pred CccccCCCCCcCEEEcCC
Q 001313 198 GPKRLSRLNNLKVFDLSG 215 (1102)
Q Consensus 198 ~~~~l~~l~~L~~L~Ls~ 215 (1102)
..+.+..-+.|++|+|++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223444445555555553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.06 E-value=0.00082 Score=66.07 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=33.4
Q ss_pred hhHhhhcCCCcCEEEcCCC-cccCCCCh----hhhccCCCCcEEEcCCCcCCcccccCCccccCCCCCcCEEEcCCCcCC
Q 001313 145 ILSSLARLSSLTSLDLSAN-RLKGSIDI----KELDSLRDLEKLNIGRNMIDKFVVSKGPKRLSRLNNLKVFDLSGNLFN 219 (1102)
Q Consensus 145 ~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 219 (1102)
+...+.+-+.|++|+|++| ++... .. +.+..-+.|++|+|++|.+.........+.+..-+.|++|+|++|.++
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444555677888888775 55311 11 222333444444444444443332222223333344444444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.0017 Score=59.68 Aligned_cols=37 Identities=24% Similarity=0.108 Sum_probs=18.3
Q ss_pred CCEEeCCCCcCcccCchhhhcCCCCCEEEcccCcCcc
Q 001313 955 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 991 (1102)
Q Consensus 955 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 991 (1102)
|+.|||++|+|+...+..|..+++|++|+|++|++.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4444444444444333444445555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0027 Score=58.32 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=49.8
Q ss_pred ceEECCCCCCC-CCCcccccCCCcCCEEECCCCCCCCCCcccccCCCcCCEEeCCCCcCc
Q 001313 908 SGLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 966 (1102)
Q Consensus 908 ~~L~Ls~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 966 (1102)
..+|.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47999999997 46776654 47999999999999888889999999999999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.03 E-value=27 Score=29.58 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=19.7
Q ss_pred ccCCcccCCCCCCcEEEccCcccccccchhHhhcCCCCcEEEcc
Q 001313 601 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 644 (1102)
Q Consensus 601 ~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 644 (1102)
.+-..+|.+|++|+.+.+..+ ++ .|....|.+|.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 334445555555555555443 22 4444444444444444443
No 166
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=39.03 E-value=9.9 Score=20.97 Aligned_cols=10 Identities=20% Similarity=0.929 Sum_probs=8.0
Q ss_pred CCCcCcCceE
Q 001313 59 TDCCQWERVS 68 (1102)
Q Consensus 59 ~~cc~w~gv~ 68 (1102)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 5689999975
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.33 E-value=61 Score=27.30 Aligned_cols=43 Identities=21% Similarity=0.121 Sum_probs=20.5
Q ss_pred CcccccccCCCccCeeeccCccCcccCCCCcCCCCCCcEEEccC
Q 001313 650 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 693 (1102)
Q Consensus 650 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 693 (1102)
.+...+|.++++|+.+.|-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 333444445555555554443 2223344555555555555543
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.81 E-value=52 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhc
Q 001313 1049 ITFTTSYVIVIFGIVAVLYVNA 1070 (1102)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~ 1070 (1102)
+.++++.++++......+.|+|
T Consensus 10 lt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEc
Confidence 3445555555554444444433
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.27 E-value=82 Score=21.12 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001313 1051 FTTSYVI 1057 (1102)
Q Consensus 1051 ~~~~~~~ 1057 (1102)
.+++.++
T Consensus 16 iVvG~v~ 22 (38)
T 2k1k_A 16 VIFGLLL 22 (38)
T ss_dssp HHHHHHH
T ss_pred eehHHHH
Confidence 3333333
Done!