Query 001314
Match_columns 1102
No_of_seqs 263 out of 554
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 21:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1920 IkappaB kinase complex 100.0 8E-206 2E-210 1828.3 75.6 1010 1-1102 243-1264(1265)
2 PF04762 IKI3: IKI3 family; I 100.0 2E-170 5E-175 1595.1 70.8 657 1-735 258-928 (928)
3 COG5290 IkappaB kinase complex 100.0 7E-169 1E-173 1440.5 46.4 948 1-1059 248-1210(1243)
4 KOG2041 WD40 repeat protein [G 99.9 2E-22 4.3E-27 232.2 21.0 204 670-885 697-909 (1189)
5 KOG3616 Selective LIM binding 99.8 2.1E-19 4.6E-24 207.6 19.2 284 612-917 619-921 (1636)
6 KOG1538 Uncharacterized conser 99.8 6.6E-18 1.4E-22 194.2 21.2 215 665-890 585-807 (1081)
7 KOG1920 IkappaB kinase complex 99.6 3.9E-10 8.4E-15 139.7 52.6 319 479-881 638-992 (1265)
8 KOG3616 Selective LIM binding 99.5 1.1E-13 2.4E-18 160.9 13.3 161 723-888 663-825 (1636)
9 KOG2247 WD40 repeat-containing 98.8 6.6E-10 1.4E-14 126.8 -1.6 200 5-239 40-266 (615)
10 KOG3617 WD40 and TPR repeat-co 98.7 3.1E-06 6.6E-11 101.7 25.2 146 768-923 913-1108(1416)
11 COG5290 IkappaB kinase complex 98.6 2.2E-06 4.7E-11 102.5 21.4 244 656-923 864-1116(1243)
12 PF04762 IKI3: IKI3 family; I 98.5 3.5E-05 7.5E-10 99.6 28.9 157 4-199 214-378 (928)
13 KOG1538 Uncharacterized conser 98.4 2.9E-06 6.3E-11 99.7 14.5 227 616-867 606-843 (1081)
14 PF04053 Coatomer_WDAD: Coatom 98.0 3.6E-05 7.8E-10 91.8 13.5 135 740-881 299-442 (443)
15 KOG0318 WD40 repeat stress pro 98.0 0.012 2.6E-07 69.1 32.2 182 6-241 66-253 (603)
16 KOG3617 WD40 and TPR repeat-co 97.9 5.3E-05 1.1E-09 91.5 12.0 145 723-872 1037-1189(1416)
17 KOG0276 Vesicle coat complex C 97.9 0.00015 3.3E-09 85.7 14.1 153 723-882 601-762 (794)
18 KOG2041 WD40 repeat protein [G 97.9 0.0004 8.7E-09 82.9 17.4 125 720-850 808-933 (1189)
19 KOG0645 WD40 repeat protein [G 97.8 0.0027 5.8E-08 69.2 20.7 105 4-126 66-179 (312)
20 cd00200 WD40 WD40 domain, foun 97.8 0.0064 1.4E-07 64.9 23.9 205 4-241 14-236 (289)
21 PF08662 eIF2A: Eukaryotic tra 97.7 0.00045 9.7E-09 73.8 14.1 101 3-117 63-163 (194)
22 PLN03081 pentatricopeptide (PP 97.6 0.01 2.2E-07 75.6 25.0 162 713-879 363-553 (697)
23 KOG2114 Vacuolar assembly/sort 97.6 0.0019 4.2E-08 79.3 17.2 175 739-918 337-532 (933)
24 PF08662 eIF2A: Eukaryotic tra 97.5 0.0057 1.2E-07 65.3 19.0 102 4-114 10-117 (194)
25 KOG0296 Angio-associated migra 97.5 0.0039 8.4E-08 70.3 17.9 107 4-124 69-175 (399)
26 PF04053 Coatomer_WDAD: Coatom 97.5 0.21 4.5E-06 60.1 33.9 245 383-820 195-442 (443)
27 PLN03218 maturation of RBCL 1; 97.5 0.1 2.2E-06 69.1 33.5 153 721-878 592-778 (1060)
28 cd00200 WD40 WD40 domain, foun 97.5 0.043 9.3E-07 58.5 25.3 203 4-241 56-278 (289)
29 KOG2048 WD40 repeat protein [G 97.3 0.039 8.5E-07 66.7 23.2 133 51-201 27-185 (691)
30 PLN00181 protein SPA1-RELATED; 97.3 0.025 5.4E-07 73.1 23.8 185 4-242 488-679 (793)
31 KOG0291 WD40-repeat-containing 97.2 0.23 5E-06 61.0 28.6 212 3-241 100-367 (893)
32 PRK11788 tetratricopeptide rep 97.2 0.045 9.8E-07 63.9 22.7 163 715-879 76-274 (389)
33 PLN00181 protein SPA1-RELATED; 97.2 0.11 2.3E-06 67.4 27.9 178 4-200 537-738 (793)
34 KOG0318 WD40 repeat stress pro 97.2 0.52 1.1E-05 55.9 30.0 127 3-149 194-324 (603)
35 KOG0772 Uncharacterized conser 97.1 0.019 4.2E-07 67.3 17.8 163 4-205 219-399 (641)
36 KOG1523 Actin-related protein 97.1 0.045 9.7E-07 61.2 19.4 212 4-241 15-266 (361)
37 PRK11788 tetratricopeptide rep 97.1 0.12 2.7E-06 60.2 24.9 164 715-879 114-307 (389)
38 TIGR02917 PEP_TPR_lipo putativ 97.0 0.046 1E-06 69.8 22.4 134 716-851 541-693 (899)
39 KOG0973 Histone transcription 97.0 0.0065 1.4E-07 76.5 13.7 168 4-201 176-356 (942)
40 KOG0273 Beta-transducin family 97.0 0.084 1.8E-06 61.6 21.4 208 3-242 239-511 (524)
41 TIGR00990 3a0801s09 mitochondr 97.0 0.014 3.1E-07 73.1 16.7 154 693-850 379-565 (615)
42 PRK15174 Vi polysaccharide exp 97.0 0.069 1.5E-06 67.6 22.7 159 718-879 187-377 (656)
43 KOG2139 WD40 repeat protein [G 97.0 0.0068 1.5E-07 68.3 12.0 137 3-153 144-302 (445)
44 KOG0973 Histone transcription 96.9 0.042 9.2E-07 69.5 20.0 206 4-246 74-348 (942)
45 KOG0271 Notchless-like WD40 re 96.9 0.051 1.1E-06 61.9 18.6 202 4-241 162-426 (480)
46 TIGR02917 PEP_TPR_lipo putativ 96.9 0.38 8.2E-06 61.5 29.2 184 693-878 445-659 (899)
47 KOG1332 Vesicle coat complex C 96.9 0.052 1.1E-06 58.7 17.2 210 10-243 22-275 (299)
48 PLN03081 pentatricopeptide (PP 96.8 0.2 4.4E-06 63.8 25.9 156 721-879 303-487 (697)
49 PLN03077 Protein ECB2; Provisi 96.8 0.11 2.3E-06 67.9 23.8 149 722-877 538-714 (857)
50 KOG0547 Translocase of outer m 96.8 0.015 3.4E-07 68.0 13.9 129 666-798 343-493 (606)
51 PTZ00421 coronin; Provisional 96.7 0.17 3.7E-06 61.7 22.8 180 4-201 80-291 (493)
52 PRK10049 pgaA outer membrane p 96.7 0.11 2.4E-06 67.0 22.2 106 773-878 278-417 (765)
53 PRK11447 cellulose synthase su 96.7 0.12 2.7E-06 69.6 23.5 128 747-876 584-733 (1157)
54 KOG0645 WD40 repeat protein [G 96.7 0.12 2.6E-06 56.8 18.5 162 40-244 6-170 (312)
55 PF12234 Rav1p_C: RAVE protein 96.6 0.099 2.2E-06 64.7 19.8 162 739-903 353-535 (631)
56 PRK01742 tolB translocation pr 96.6 0.11 2.4E-06 62.3 19.9 111 4-125 208-320 (429)
57 KOG0282 mRNA splicing factor [ 96.6 0.16 3.4E-06 59.6 19.8 178 3-202 218-417 (503)
58 PLN03218 maturation of RBCL 1; 96.6 0.39 8.5E-06 63.7 26.0 156 721-879 555-744 (1060)
59 KOG0293 WD40 repeat-containing 96.6 0.16 3.6E-06 58.4 19.2 172 5-201 230-426 (519)
60 PF04840 Vps16_C: Vps16, C-ter 96.5 0.51 1.1E-05 54.4 23.8 106 780-892 190-300 (319)
61 PTZ00420 coronin; Provisional 96.5 0.3 6.6E-06 60.4 23.0 109 4-126 79-196 (568)
62 TIGR00990 3a0801s09 mitochondr 96.5 0.27 5.8E-06 61.8 23.1 186 689-877 341-565 (615)
63 KOG2247 WD40 repeat-containing 96.4 0.0002 4.4E-09 83.0 -4.8 153 712-874 49-218 (615)
64 KOG0985 Vesicle coat protein c 96.4 0.28 6E-06 62.0 21.0 157 716-878 1112-1303(1666)
65 KOG0650 WD40 repeat nucleolar 96.4 0.047 1E-06 65.1 13.9 136 50-198 522-678 (733)
66 KOG0305 Anaphase promoting com 96.3 0.79 1.7E-05 55.3 24.3 189 5-240 183-404 (484)
67 KOG2055 WD40 repeat protein [G 96.3 0.042 9.2E-07 63.8 13.1 105 6-127 310-417 (514)
68 PLN03077 Protein ECB2; Provisi 96.3 1.4 3.1E-05 57.6 28.8 158 721-879 367-579 (857)
69 PRK15174 Vi polysaccharide exp 96.3 0.19 4.1E-06 63.7 19.9 15 624-638 56-70 (656)
70 KOG0266 WD40 repeat-containing 96.2 0.2 4.4E-06 60.6 18.8 160 4-205 208-369 (456)
71 TIGR03866 PQQ_ABC_repeats PQQ- 96.1 1.7 3.7E-05 47.8 24.5 101 4-119 35-136 (300)
72 PF04841 Vps16_N: Vps16, N-ter 96.1 0.52 1.1E-05 56.3 21.5 205 5-240 34-275 (410)
73 PRK11447 cellulose synthase su 96.1 0.5 1.1E-05 63.9 23.6 158 715-879 468-662 (1157)
74 TIGR03866 PQQ_ABC_repeats PQQ- 96.0 3.3 7.1E-05 45.6 27.8 100 11-126 1-102 (300)
75 KOG0264 Nucleosome remodeling 96.0 0.22 4.9E-06 57.9 16.6 186 6-241 131-334 (422)
76 PF14938 SNAP: Soluble NSF att 95.9 0.33 7.2E-06 54.8 17.9 73 798-877 99-178 (282)
77 TIGR02521 type_IV_pilW type IV 95.9 0.17 3.8E-06 53.0 14.7 25 769-793 101-125 (234)
78 PF12931 Sec16_C: Sec23-bindin 95.9 0.064 1.4E-06 60.8 11.8 120 730-855 4-143 (284)
79 KOG0306 WD40-repeat-containing 95.8 0.17 3.7E-06 62.1 15.4 151 38-202 363-540 (888)
80 KOG0291 WD40-repeat-containing 95.8 1.1 2.4E-05 55.3 22.2 100 49-153 307-414 (893)
81 PF14938 SNAP: Soluble NSF att 95.8 0.15 3.3E-06 57.6 14.4 23 828-850 156-178 (282)
82 KOG1407 WD40 repeat protein [F 95.7 0.93 2E-05 49.8 18.9 206 4-244 69-292 (313)
83 KOG1063 RNA polymerase II elon 95.7 0.14 3E-06 62.3 13.8 165 4-201 530-700 (764)
84 KOG1840 Kinesin light chain [C 95.7 0.6 1.3E-05 56.9 19.5 50 996-1047 428-478 (508)
85 PTZ00421 coronin; Provisional 95.4 0.59 1.3E-05 57.1 18.5 108 4-125 130-243 (493)
86 PTZ00420 coronin; Provisional 95.3 8.5 0.00018 48.0 28.2 117 50-201 75-198 (568)
87 KOG2066 Vacuolar assembly/sort 95.3 1.3 2.8E-05 55.3 20.5 208 657-889 460-710 (846)
88 KOG1524 WD40 repeat-containing 95.3 0.22 4.8E-06 59.0 13.4 151 4-199 191-347 (737)
89 PRK05137 tolB translocation pr 95.3 0.57 1.2E-05 56.2 17.8 101 4-116 206-308 (435)
90 PF13429 TPR_15: Tetratricopep 95.3 0.041 9E-07 61.7 7.6 164 715-880 15-206 (280)
91 PRK03629 tolB translocation pr 95.3 0.99 2.1E-05 54.2 19.6 102 4-116 203-305 (429)
92 KOG1587 Cytoplasmic dynein int 95.2 3.8 8.3E-05 50.7 24.4 126 50-201 181-324 (555)
93 KOG0290 Conserved WD40 repeat- 95.1 0.5 1.1E-05 52.5 14.7 163 4-201 49-228 (364)
94 KOG0284 Polyadenylation factor 95.1 0.37 7.9E-06 55.7 13.9 203 4-241 143-367 (464)
95 KOG1009 Chromatin assembly com 95.0 0.44 9.5E-06 55.0 14.4 94 4-110 70-179 (434)
96 KOG1274 WD40 repeat protein [G 95.0 0.11 2.3E-06 65.0 10.3 98 4-120 193-293 (933)
97 KOG2076 RNA polymerase III tra 95.0 0.45 9.8E-06 59.9 15.6 162 693-879 153-341 (895)
98 KOG0273 Beta-transducin family 94.9 1.2 2.6E-05 52.4 17.8 178 4-199 281-522 (524)
99 PF04097 Nic96: Nup93/Nic96; 94.9 0.58 1.3E-05 58.8 16.7 124 751-880 395-531 (613)
100 KOG0305 Anaphase promoting com 94.9 0.54 1.2E-05 56.7 15.5 183 3-241 264-448 (484)
101 KOG1586 Protein required for f 94.9 0.81 1.7E-05 49.8 15.1 42 829-870 102-143 (288)
102 KOG1407 WD40 repeat protein [F 94.8 0.94 2E-05 49.8 15.5 141 50-201 21-178 (313)
103 KOG4626 O-linked N-acetylgluco 94.8 0.24 5.2E-06 59.8 12.0 177 691-874 230-455 (966)
104 KOG4626 O-linked N-acetylgluco 94.8 0.4 8.7E-06 58.0 13.8 110 751-876 239-376 (966)
105 KOG1274 WD40 repeat protein [G 94.8 0.41 8.9E-06 60.1 14.3 152 4-171 143-318 (933)
106 KOG1273 WD40 repeat protein [G 94.7 1.7 3.6E-05 49.0 17.5 167 4-203 28-229 (405)
107 PRK02889 tolB translocation pr 94.7 1.9 4.2E-05 51.7 20.0 108 4-124 200-311 (427)
108 PRK04922 tolB translocation pr 94.7 1.7 3.7E-05 52.1 19.6 100 4-114 208-308 (433)
109 KOG0307 Vesicle coat complex C 94.5 0.31 6.8E-06 62.4 12.7 150 680-848 515-686 (1049)
110 COG2956 Predicted N-acetylgluc 94.4 2.6 5.6E-05 48.0 18.1 132 766-898 106-260 (389)
111 KOG1064 RAVE (regulator of V-A 94.3 0.83 1.8E-05 61.2 16.0 174 706-882 1128-1330(2439)
112 KOG1524 WD40 repeat-containing 94.3 0.44 9.5E-06 56.6 12.3 120 740-881 578-697 (737)
113 KOG0772 Uncharacterized conser 94.1 0.28 6.1E-06 58.0 10.4 162 4-201 322-488 (641)
114 KOG2003 TPR repeat-containing 94.0 17 0.00036 43.1 25.1 204 613-875 424-647 (840)
115 KOG2315 Predicted translation 93.9 0.63 1.4E-05 55.7 13.0 126 3-152 274-400 (566)
116 PF15492 Nbas_N: Neuroblastoma 93.9 5.1 0.00011 44.9 19.0 182 4-202 48-261 (282)
117 KOG2376 Signal recognition par 93.8 1.6 3.5E-05 53.0 16.1 130 721-852 59-200 (652)
118 KOG0302 Ribosome Assembly prot 93.7 0.32 6.9E-06 55.7 9.6 143 53-201 215-379 (440)
119 KOG0295 WD40 repeat-containing 93.5 1 2.2E-05 51.4 13.2 163 4-202 198-366 (406)
120 PRK10049 pgaA outer membrane p 93.5 4.1 9E-05 52.7 20.9 161 716-878 91-296 (765)
121 KOG0264 Nucleosome remodeling 93.5 0.71 1.5E-05 53.9 12.2 184 3-200 181-404 (422)
122 PF13429 TPR_15: Tetratricopep 93.5 0.12 2.6E-06 58.0 6.2 161 716-879 52-239 (280)
123 TIGR02800 propeller_TolB tol-p 93.5 3.9 8.4E-05 48.3 19.2 101 4-114 194-294 (417)
124 KOG1155 Anaphase-promoting com 93.5 1.8 3.9E-05 51.3 15.3 135 768-918 331-496 (559)
125 PRK14574 hmsH outer membrane p 93.4 3.4 7.4E-05 53.7 19.6 227 692-924 47-305 (822)
126 KOG1840 Kinesin light chain [C 93.4 2 4.4E-05 52.5 16.4 187 673-879 84-308 (508)
127 COG3063 PilF Tfp pilus assembl 93.4 0.49 1.1E-05 51.4 9.9 99 751-854 90-200 (250)
128 KOG0266 WD40 repeat-containing 93.3 2.3 5E-05 51.6 16.9 108 4-127 251-364 (456)
129 KOG0315 G-protein beta subunit 93.2 5.5 0.00012 43.8 17.4 140 12-201 11-155 (311)
130 KOG2003 TPR repeat-containing 93.1 0.76 1.6E-05 53.6 11.6 127 691-818 536-685 (840)
131 TIGR02521 type_IV_pilW type IV 93.1 4.4 9.4E-05 42.3 16.9 108 772-879 70-194 (234)
132 KOG2110 Uncharacterized conser 93.0 3.2 7E-05 47.7 16.1 184 5-201 135-331 (391)
133 PF13424 TPR_12: Tetratricopep 92.8 0.71 1.5E-05 41.0 8.9 58 788-851 13-70 (78)
134 PRK09782 bacteriophage N4 rece 92.8 4.5 9.8E-05 53.6 19.7 174 701-878 499-701 (987)
135 KOG2139 WD40 repeat protein [G 92.8 1.5 3.3E-05 50.1 13.1 111 3-131 199-313 (445)
136 TIGR00540 hemY_coli hemY prote 92.8 1 2.2E-05 53.8 12.7 106 712-818 88-212 (409)
137 KOG4378 Nuclear protein COP1 [ 92.8 1.5 3.2E-05 51.9 13.3 182 4-201 39-240 (673)
138 KOG2002 TPR-containing nuclear 92.8 5.5 0.00012 51.1 19.1 150 721-872 625-800 (1018)
139 KOG0279 G protein beta subunit 92.7 18 0.00039 40.6 20.7 201 6-237 70-296 (315)
140 PRK04792 tolB translocation pr 92.6 1.6 3.5E-05 52.8 14.3 100 4-114 222-322 (448)
141 KOG0315 G-protein beta subunit 92.6 9.9 0.00021 41.9 18.3 157 4-208 45-205 (311)
142 PRK10747 putative protoheme IX 92.6 2.1 4.5E-05 50.9 15.0 105 713-818 89-212 (398)
143 PRK12370 invasion protein regu 92.5 3.1 6.6E-05 51.8 17.0 109 770-879 341-466 (553)
144 KOG2002 TPR-containing nuclear 92.5 1.7 3.6E-05 55.5 14.2 78 773-850 652-739 (1018)
145 KOG0319 WD40-repeat-containing 92.4 37 0.00079 42.6 24.8 157 2-203 22-182 (775)
146 PF12895 Apc3: Anaphase-promot 92.4 0.19 4.1E-06 45.8 4.6 50 801-851 33-82 (84)
147 PRK00178 tolB translocation pr 92.3 1.8 3.9E-05 51.7 14.1 101 4-114 203-303 (430)
148 PRK03629 tolB translocation pr 92.0 3 6.5E-05 50.1 15.6 97 3-110 246-344 (429)
149 KOG1585 Protein required for f 92.0 1.7 3.7E-05 47.7 11.8 40 828-874 131-170 (308)
150 KOG1587 Cytoplasmic dynein int 92.0 2.4 5.3E-05 52.3 14.7 180 5-200 248-472 (555)
151 KOG0302 Ribosome Assembly prot 91.9 2.2 4.7E-05 49.2 13.0 154 4-182 262-431 (440)
152 PRK11028 6-phosphogluconolacto 91.8 28 0.00061 39.8 23.6 113 3-126 38-155 (330)
153 PRK10747 putative protoheme IX 91.7 4.9 0.00011 47.8 16.8 51 828-878 264-318 (398)
154 PF12688 TPR_5: Tetratrico pep 91.6 1.2 2.6E-05 44.1 9.5 58 785-852 6-63 (120)
155 PRK01742 tolB translocation pr 91.6 10 0.00022 45.5 19.5 108 11-125 168-276 (429)
156 KOG2106 Uncharacterized conser 91.6 3.9 8.4E-05 48.7 14.8 135 52-240 371-507 (626)
157 KOG0307 Vesicle coat complex C 91.6 2.3 5E-05 54.8 14.2 139 724-871 490-631 (1049)
158 KOG0647 mRNA export protein (c 91.5 5.1 0.00011 45.1 15.0 150 3-201 31-185 (347)
159 KOG0276 Vesicle coat complex C 91.4 3.7 8E-05 50.0 14.7 146 655-838 630-777 (794)
160 KOG0985 Vesicle coat protein c 91.3 34 0.00074 44.4 23.2 111 768-879 1105-1245(1666)
161 KOG2114 Vacuolar assembly/sort 91.2 10 0.00023 48.0 18.7 93 784-886 435-533 (933)
162 KOG0278 Serine/threonine kinas 91.1 4.5 9.8E-05 44.4 13.8 148 5-201 149-298 (334)
163 KOG4378 Nuclear protein COP1 [ 91.1 4.3 9.4E-05 48.2 14.5 153 11-180 133-305 (673)
164 KOG1585 Protein required for f 91.1 0.85 1.8E-05 49.9 8.3 42 826-867 90-136 (308)
165 PF12931 Sec16_C: Sec23-bindin 91.0 1.8 3.9E-05 49.2 11.5 94 789-884 4-114 (284)
166 PF04097 Nic96: Nup93/Nic96; 90.9 4.9 0.00011 50.6 16.3 150 715-867 265-453 (613)
167 KOG2055 WD40 repeat protein [G 90.8 5.7 0.00012 46.9 15.2 139 51-201 305-468 (514)
168 KOG2168 Cullins [Cell cycle co 90.7 4.1 9E-05 51.7 15.0 110 766-880 621-733 (835)
169 PRK01029 tolB translocation pr 90.6 3.7 8.1E-05 49.4 14.4 101 4-114 285-387 (428)
170 KOG2047 mRNA splicing factor [ 90.5 13 0.00028 46.0 18.2 196 714-927 115-335 (835)
171 KOG2034 Vacuolar sorting prote 90.5 4.9 0.00011 51.1 15.2 58 835-893 512-569 (911)
172 KOG1126 DNA-binding cell divis 90.4 5.1 0.00011 49.4 15.0 85 721-807 366-482 (638)
173 PRK11028 6-phosphogluconolacto 90.3 16 0.00035 41.8 18.9 82 3-93 129-218 (330)
174 COG2956 Predicted N-acetylgluc 90.2 36 0.00078 39.2 20.2 161 684-850 88-272 (389)
175 KOG2111 Uncharacterized conser 90.1 9.3 0.0002 43.4 15.5 133 51-202 87-258 (346)
176 PRK12370 invasion protein regu 90.1 5.2 0.00011 49.8 15.5 101 751-853 352-467 (553)
177 PRK04922 tolB translocation pr 90.1 6.1 0.00013 47.5 15.6 101 4-114 252-352 (433)
178 KOG0292 Vesicle coat complex C 90.0 3 6.4E-05 52.6 12.6 89 4-110 14-107 (1202)
179 TIGR03302 OM_YfiO outer membra 90.0 4.9 0.00011 43.5 13.5 21 713-733 38-58 (235)
180 PRK00178 tolB translocation pr 90.0 6.5 0.00014 47.0 15.8 101 4-114 247-347 (430)
181 PRK04792 tolB translocation pr 89.9 6.6 0.00014 47.5 15.8 102 3-114 265-366 (448)
182 TIGR02800 propeller_TolB tol-p 89.9 21 0.00045 42.2 19.8 107 11-125 155-262 (417)
183 KOG0316 Conserved WD40 repeat- 89.7 19 0.00042 39.5 16.9 152 7-201 44-214 (307)
184 PRK15179 Vi polysaccharide bio 89.6 2.3 5.1E-05 54.1 12.0 113 712-852 90-213 (694)
185 KOG1586 Protein required for f 89.4 9.1 0.0002 42.0 14.3 115 724-852 57-179 (288)
186 PRK09782 bacteriophage N4 rece 89.2 12 0.00025 49.9 18.3 160 713-880 83-273 (987)
187 PF10282 Lactonase: Lactonase, 89.1 46 0.001 38.7 21.5 204 5-244 92-311 (345)
188 PF09295 ChAPs: ChAPs (Chs5p-A 89.0 1.1 2.5E-05 53.0 8.1 101 699-822 189-297 (395)
189 PF12569 NARP1: NMDA receptor- 89.0 17 0.00037 44.8 18.4 57 827-884 228-292 (517)
190 KOG1036 Mitotic spindle checkp 88.9 19 0.00041 40.8 16.7 140 41-205 5-168 (323)
191 PF11768 DUF3312: Protein of u 88.7 8.4 0.00018 47.0 15.0 66 161-242 252-317 (545)
192 KOG0650 WD40 repeat nucleolar 88.5 11 0.00023 46.1 15.3 169 4-201 405-596 (733)
193 KOG1523 Actin-related protein 88.3 53 0.0012 37.6 19.8 149 51-241 12-163 (361)
194 PF15390 DUF4613: Domain of un 88.1 12 0.00027 45.7 15.7 117 51-203 58-187 (671)
195 PF10282 Lactonase: Lactonase, 88.0 19 0.00041 41.9 17.3 166 3-201 147-323 (345)
196 KOG0269 WD40 repeat-containing 87.9 4.1 9E-05 50.7 11.8 180 5-241 45-237 (839)
197 COG3071 HemY Uncharacterized e 87.8 9.9 0.00021 44.5 14.2 104 715-819 91-213 (400)
198 KOG2445 Nuclear pore complex c 87.7 12 0.00027 42.3 14.3 128 51-204 15-148 (361)
199 KOG0310 Conserved WD40 repeat- 87.5 73 0.0016 38.3 21.3 228 4-326 73-305 (487)
200 COG2909 MalT ATP-dependent tra 87.5 31 0.00066 44.4 19.2 190 654-851 195-439 (894)
201 PRK14720 transcript cleavage f 87.5 5.8 0.00013 51.6 13.4 92 766-878 102-193 (906)
202 PF09976 TPR_21: Tetratricopep 87.3 3 6.4E-05 42.1 8.9 81 712-793 52-144 (145)
203 KOG0284 Polyadenylation factor 87.1 1.4 3E-05 51.1 6.9 103 3-122 226-332 (464)
204 PRK05137 tolB translocation pr 86.9 11 0.00024 45.3 14.9 101 4-114 250-350 (435)
205 KOG1036 Mitotic spindle checkp 86.8 55 0.0012 37.3 18.7 116 109-242 145-292 (323)
206 PRK02889 tolB translocation pr 86.7 14 0.0003 44.4 15.6 99 4-114 244-344 (427)
207 KOG0647 mRNA export protein (c 86.6 33 0.00071 39.0 16.8 173 5-202 78-283 (347)
208 COG4783 Putative Zn-dependent 86.5 5.6 0.00012 47.6 11.5 21 829-849 410-430 (484)
209 PRK01029 tolB translocation pr 86.4 4.8 0.0001 48.5 11.5 94 4-106 331-424 (428)
210 KOG1445 Tumor-specific antigen 86.4 1.8 4E-05 52.4 7.6 137 4-154 632-787 (1012)
211 PF09976 TPR_21: Tetratricopep 86.3 16 0.00034 36.8 13.6 81 769-850 50-141 (145)
212 smart00299 CLH Clathrin heavy 86.3 13 0.00028 37.0 12.8 43 776-818 78-121 (140)
213 KOG0275 Conserved WD40 repeat- 86.0 23 0.0005 40.2 15.2 140 51-202 215-380 (508)
214 KOG1273 WD40 repeat protein [G 85.9 30 0.00065 39.5 16.1 80 146-242 4-83 (405)
215 KOG4283 Transcription-coupled 85.6 62 0.0013 36.7 18.1 165 4-201 106-277 (397)
216 PF12688 TPR_5: Tetratrico pep 85.5 3.9 8.4E-05 40.5 8.3 80 712-792 5-100 (120)
217 KOG1332 Vesicle coat complex C 85.0 23 0.00049 39.2 14.2 176 5-205 62-291 (299)
218 KOG0272 U4/U6 small nuclear ri 84.9 3.9 8.4E-05 47.8 9.0 149 3-201 221-376 (459)
219 KOG2314 Translation initiation 84.8 6 0.00013 47.7 10.7 96 4-110 450-551 (698)
220 KOG0271 Notchless-like WD40 re 84.8 4.7 0.0001 46.6 9.5 91 4-110 372-465 (480)
221 KOG2110 Uncharacterized conser 84.8 3.1 6.7E-05 47.9 8.0 69 3-79 177-245 (391)
222 KOG2394 WD40 protein DMR-N9 [G 84.6 4.4 9.6E-05 48.6 9.4 126 100-241 223-349 (636)
223 TIGR03302 OM_YfiO outer membra 84.5 45 0.00098 36.0 17.1 25 828-852 204-228 (235)
224 KOG0270 WD40 repeat-containing 84.3 9.3 0.0002 45.0 11.7 139 52-201 246-405 (463)
225 KOG1063 RNA polymerase II elon 84.3 4.1 8.8E-05 50.2 9.2 112 4-127 577-699 (764)
226 KOG1539 WD repeat protein [Gen 84.1 47 0.001 42.3 18.1 163 10-202 93-277 (910)
227 KOG1156 N-terminal acetyltrans 83.9 56 0.0012 40.8 18.4 40 1011-1050 633-677 (700)
228 PRK15359 type III secretion sy 83.8 4 8.7E-05 41.3 7.9 20 831-850 62-81 (144)
229 PF12894 Apc4_WD40: Anaphase-p 83.2 1.3 2.9E-05 36.3 3.3 28 101-129 16-43 (47)
230 KOG2376 Signal recognition par 83.2 31 0.00067 42.5 15.7 59 789-853 184-250 (652)
231 COG3063 PilF Tfp pilus assembl 83.1 23 0.00049 39.0 13.3 116 787-917 76-202 (250)
232 PRK11189 lipoprotein NlpI; Pro 82.8 24 0.00053 40.1 14.6 76 713-792 103-190 (296)
233 PF12234 Rav1p_C: RAVE protein 82.7 31 0.00066 43.5 16.1 106 762-868 447-555 (631)
234 KOG0294 WD40 repeat-containing 82.6 21 0.00046 40.6 13.2 149 5-200 133-281 (362)
235 PRK10803 tol-pal system protei 82.2 8.5 0.00018 43.3 10.4 98 723-852 145-242 (263)
236 KOG4497 Uncharacterized conser 82.1 5.7 0.00012 45.1 8.6 89 5-110 14-105 (447)
237 KOG2048 WD40 repeat protein [G 82.1 76 0.0016 39.6 18.5 87 26-121 46-134 (691)
238 COG3071 HemY Uncharacterized e 82.0 16 0.00034 42.9 12.4 108 727-850 269-384 (400)
239 PF10602 RPN7: 26S proteasome 81.9 10 0.00022 40.1 10.3 91 762-852 31-138 (177)
240 TIGR02552 LcrH_SycD type III s 81.7 6.9 0.00015 38.2 8.5 39 752-793 5-43 (135)
241 KOG2096 WD40 repeat protein [G 81.7 15 0.00033 41.8 11.6 157 7-198 236-400 (420)
242 PRK15363 pathogenicity island 81.6 6.9 0.00015 40.5 8.5 23 844-867 107-129 (157)
243 KOG2280 Vacuolar assembly/sort 81.5 48 0.001 41.9 16.8 98 780-883 697-799 (829)
244 KOG0321 WD40 repeat-containing 81.3 39 0.00085 41.8 15.6 171 25-201 72-302 (720)
245 KOG1155 Anaphase-promoting com 81.1 25 0.00054 42.2 13.6 142 721-878 343-531 (559)
246 PF04733 Coatomer_E: Coatomer 80.9 14 0.00031 42.1 11.7 107 773-879 108-226 (290)
247 PRK02603 photosystem I assembl 80.7 10 0.00022 39.3 9.7 23 770-792 38-60 (172)
248 TIGR00540 hemY_coli hemY prote 80.5 37 0.00079 40.5 15.6 26 768-793 188-213 (409)
249 KOG1963 WD40 repeat protein [G 80.4 65 0.0014 41.2 17.7 110 3-127 255-375 (792)
250 KOG1174 Anaphase-promoting com 80.2 31 0.00068 40.8 13.8 156 751-912 314-495 (564)
251 KOG2111 Uncharacterized conser 80.2 64 0.0014 37.0 15.9 167 12-200 149-322 (346)
252 KOG2314 Translation initiation 80.0 9.6 0.00021 46.1 10.0 100 4-110 398-506 (698)
253 KOG2321 WD40 repeat protein [G 79.8 13 0.00028 45.2 10.9 88 34-127 159-258 (703)
254 KOG1445 Tumor-specific antigen 79.8 22 0.00047 43.7 12.8 122 102-241 633-781 (1012)
255 KOG2445 Nuclear pore complex c 79.7 1.2E+02 0.0026 34.8 22.0 112 3-126 17-143 (361)
256 KOG4340 Uncharacterized conser 79.5 14 0.00031 41.7 10.5 69 751-820 24-105 (459)
257 KOG1188 WD40 repeat protein [G 79.4 20 0.00043 41.2 11.8 122 51-203 119-245 (376)
258 PRK14720 transcript cleavage f 79.3 29 0.00062 45.5 14.7 97 767-878 150-247 (906)
259 PRK15179 Vi polysaccharide bio 79.3 8.4 0.00018 49.2 10.0 86 768-854 87-181 (694)
260 KOG0279 G protein beta subunit 79.0 82 0.0018 35.6 16.0 155 4-199 153-312 (315)
261 KOG0269 WD40 repeat-containing 78.9 7.9 0.00017 48.4 9.1 99 5-114 182-281 (839)
262 KOG0272 U4/U6 small nuclear ri 78.9 34 0.00074 40.4 13.6 150 4-200 266-418 (459)
263 PRK14574 hmsH outer membrane p 78.7 15 0.00032 48.0 12.2 170 710-881 36-230 (822)
264 CHL00033 ycf3 photosystem I as 78.6 24 0.00052 36.3 11.7 14 854-867 126-139 (168)
265 KOG3081 Vesicle coat complex C 78.4 82 0.0018 35.5 15.8 94 783-878 111-231 (299)
266 smart00299 CLH Clathrin heavy 78.2 10 0.00022 37.8 8.5 48 840-888 82-130 (140)
267 KOG4640 Anaphase-promoting com 78.1 6.7 0.00015 48.1 8.1 70 5-85 26-95 (665)
268 KOG1310 WD40 repeat protein [G 78.1 6.8 0.00015 47.2 8.0 123 52-201 53-179 (758)
269 KOG0550 Molecular chaperone (D 78.0 11 0.00024 44.4 9.5 20 713-732 174-193 (486)
270 KOG0290 Conserved WD40 repeat- 77.9 41 0.00089 38.0 13.4 157 5-198 202-363 (364)
271 PF12569 NARP1: NMDA receptor- 77.8 21 0.00045 44.2 12.5 24 1012-1035 466-489 (517)
272 PRK04043 tolB translocation pr 77.8 56 0.0012 39.3 16.0 103 4-116 192-295 (419)
273 KOG2066 Vacuolar assembly/sort 77.6 56 0.0012 41.5 15.8 67 740-807 360-437 (846)
274 PF09295 ChAPs: ChAPs (Chs5p-A 77.2 18 0.0004 43.1 11.4 106 740-876 173-290 (395)
275 cd00189 TPR Tetratricopeptide 77.1 9.5 0.00021 32.6 7.1 20 830-849 71-90 (100)
276 KOG0553 TPR repeat-containing 76.7 13 0.00028 42.2 9.3 75 787-881 122-196 (304)
277 KOG0283 WD40 repeat-containing 76.6 26 0.00055 44.3 12.7 106 52-199 372-480 (712)
278 PF04733 Coatomer_E: Coatomer 75.6 19 0.00042 41.0 10.8 77 716-793 110-193 (290)
279 PF13432 TPR_16: Tetratricopep 75.6 5.8 0.00013 33.8 5.1 28 766-793 30-57 (65)
280 KOG0548 Molecular co-chaperone 75.6 19 0.00041 43.7 10.8 126 722-852 312-451 (539)
281 KOG1126 DNA-binding cell divis 75.2 10 0.00022 46.9 8.6 48 669-734 468-515 (638)
282 PF07079 DUF1347: Protein of u 74.7 1E+02 0.0022 37.2 16.1 49 803-851 355-403 (549)
283 PRK10370 formate-dependent nit 74.3 23 0.00049 38.0 10.3 25 769-793 75-99 (198)
284 PRK11189 lipoprotein NlpI; Pro 74.1 41 0.00088 38.3 13.0 42 751-793 78-124 (296)
285 KOG0263 Transcription initiati 73.9 15 0.00032 46.1 9.6 105 3-123 539-645 (707)
286 PF00637 Clathrin: Region in C 73.8 0.3 6.4E-06 49.0 -4.0 60 833-893 76-135 (143)
287 KOG4497 Uncharacterized conser 73.5 3.7 8E-05 46.6 4.1 103 4-117 96-198 (447)
288 cd05804 StaR_like StaR_like; a 73.2 31 0.00067 39.6 12.0 51 829-879 150-211 (355)
289 KOG2280 Vacuolar assembly/sort 73.1 18 0.00038 45.6 10.0 82 796-881 687-771 (829)
290 KOG3060 Uncharacterized conser 73.0 9.6 0.00021 42.3 7.0 27 767-793 86-112 (289)
291 KOG0289 mRNA splicing factor [ 72.9 1.4E+02 0.0031 35.6 16.5 99 100-208 351-469 (506)
292 PF15492 Nbas_N: Neuroblastoma 72.8 1.5E+02 0.0032 33.6 16.2 44 155-199 79-126 (282)
293 KOG1446 Histone H3 (Lys4) meth 72.2 1.9E+02 0.0041 33.2 17.5 110 4-125 145-260 (311)
294 KOG0771 Prolactin regulatory e 72.1 59 0.0013 38.3 13.3 176 2-200 147-354 (398)
295 PLN03088 SGT1, suppressor of 71.9 11 0.00024 44.3 7.8 46 1021-1069 297-342 (356)
296 KOG0263 Transcription initiati 71.8 8 0.00017 48.3 6.8 67 4-82 582-649 (707)
297 PRK10803 tol-pal system protei 71.5 18 0.00039 40.7 9.0 87 780-876 143-239 (263)
298 PF00637 Clathrin: Region in C 71.3 0.44 9.6E-06 47.7 -3.4 65 773-842 76-140 (143)
299 KOG0548 Molecular co-chaperone 70.6 2E+02 0.0043 35.4 17.6 90 786-875 304-413 (539)
300 KOG1130 Predicted G-alpha GTPa 70.5 31 0.00068 40.7 10.6 76 766-848 221-296 (639)
301 KOG2047 mRNA splicing factor [ 70.5 20 0.00043 44.5 9.4 43 751-794 571-613 (835)
302 TIGR02795 tol_pal_ybgF tol-pal 70.4 19 0.00042 33.7 7.9 21 830-850 79-99 (119)
303 PF12895 Apc3: Anaphase-promot 69.6 14 0.00031 33.3 6.5 51 828-878 26-82 (84)
304 KOG2168 Cullins [Cell cycle co 69.6 23 0.00051 45.3 10.2 116 697-820 613-734 (835)
305 KOG1127 TPR repeat-containing 69.6 1.9E+02 0.0041 38.2 17.8 48 828-876 597-652 (1238)
306 KOG2079 Vacuolar assembly/sort 69.5 77 0.0017 41.7 14.5 92 26-127 108-205 (1206)
307 PRK13616 lipoprotein LpqB; Pro 69.2 42 0.00091 42.3 12.5 58 4-68 401-466 (591)
308 PRK04043 tolB translocation pr 69.1 2.1E+02 0.0045 34.5 18.0 80 27-110 155-246 (419)
309 PF12657 TFIIIC_delta: Transcr 68.6 25 0.00055 36.7 9.0 32 170-201 87-122 (173)
310 TIGR02795 tol_pal_ybgF tol-pal 68.5 50 0.0011 30.8 10.3 49 828-876 40-98 (119)
311 PF13424 TPR_12: Tetratricopep 68.3 7.7 0.00017 34.3 4.4 27 767-793 46-72 (78)
312 COG4783 Putative Zn-dependent 68.3 72 0.0016 38.6 13.3 59 784-855 344-402 (484)
313 KOG1009 Chromatin assembly com 67.2 43 0.00094 39.3 10.9 96 6-110 20-137 (434)
314 KOG1070 rRNA processing protei 67.0 87 0.0019 42.4 14.5 64 765-852 1562-1625(1710)
315 KOG0994 Extracellular matrix g 67.0 3.7E+02 0.008 36.1 19.4 29 895-923 1689-1717(1758)
316 PF00780 CNH: CNH domain; Int 66.9 89 0.0019 34.6 13.5 120 111-239 9-153 (275)
317 KOG1064 RAVE (regulator of V-A 66.6 34 0.00074 47.1 11.0 144 721-867 1213-1377(2439)
318 PRK15359 type III secretion sy 66.2 21 0.00045 36.1 7.5 19 715-733 31-49 (144)
319 KOG0553 TPR repeat-containing 65.8 17 0.00036 41.4 7.1 39 720-760 93-138 (304)
320 PF13432 TPR_16: Tetratricopep 65.8 14 0.0003 31.4 5.3 53 787-852 4-56 (65)
321 cd05804 StaR_like StaR_like; a 65.3 67 0.0015 36.8 12.5 50 769-818 116-173 (355)
322 PF12894 Apc4_WD40: Anaphase-p 65.0 11 0.00024 31.0 4.2 29 4-38 16-44 (47)
323 KOG0289 mRNA splicing factor [ 64.1 1.6E+02 0.0036 35.1 14.7 109 5-127 309-419 (506)
324 KOG0543 FKBP-type peptidyl-pro 64.0 99 0.0021 36.7 13.1 49 798-847 262-311 (397)
325 PF13281 DUF4071: Domain of un 63.9 84 0.0018 37.3 12.7 54 812-866 268-330 (374)
326 COG2706 3-carboxymuconate cycl 63.9 2.1E+02 0.0046 33.3 15.5 135 5-163 196-343 (346)
327 PF11768 DUF3312: Protein of u 63.8 35 0.00076 41.9 9.8 70 50-127 260-329 (545)
328 KOG0277 Peroxisomal targeting 63.0 2.5E+02 0.0055 31.5 15.0 149 5-202 66-223 (311)
329 KOG3837 Uncharacterized conser 63.0 24 0.00052 41.5 7.8 109 779-888 107-259 (523)
330 PRK04841 transcriptional regul 62.2 1.3E+02 0.0028 39.5 15.8 53 751-803 322-377 (903)
331 KOG2076 RNA polymerase III tra 62.2 94 0.002 40.2 13.3 26 828-853 242-267 (895)
332 PF04840 Vps16_C: Vps16, C-ter 62.0 36 0.00078 39.4 9.3 48 771-819 241-288 (319)
333 KOG0270 WD40 repeat-containing 61.9 2.8E+02 0.0061 33.3 16.1 180 5-201 131-361 (463)
334 KOG4283 Transcription-coupled 61.6 14 0.00031 41.5 5.5 74 4-85 193-279 (397)
335 PF00400 WD40: WD domain, G-be 60.3 14 0.0003 27.9 3.9 24 4-33 16-39 (39)
336 KOG1941 Acetylcholine receptor 60.2 1.2E+02 0.0025 35.7 12.4 47 739-792 138-187 (518)
337 CHL00033 ycf3 photosystem I as 60.1 78 0.0017 32.5 10.7 19 829-847 115-133 (168)
338 KOG0293 WD40 repeat-containing 59.9 1.8E+02 0.004 34.5 14.1 134 51-202 226-386 (519)
339 KOG2034 Vacuolar sorting prote 59.7 36 0.00077 43.8 9.1 79 784-879 362-440 (911)
340 PF04184 ST7: ST7 protein; In 59.6 24 0.00051 42.8 7.3 67 801-867 267-337 (539)
341 TIGR02552 LcrH_SycD type III s 58.8 62 0.0013 31.4 9.3 12 721-732 30-41 (135)
342 PF00930 DPPIV_N: Dipeptidyl p 58.7 3.2E+02 0.0068 31.9 16.6 78 3-81 104-217 (353)
343 KOG0643 Translation initiation 58.6 2E+02 0.0044 32.4 13.5 95 26-127 73-177 (327)
344 PF08311 Mad3_BUB1_I: Mad3/BUB 58.6 35 0.00076 34.0 7.4 26 826-851 98-123 (126)
345 PF13371 TPR_9: Tetratricopept 58.6 18 0.0004 31.3 4.8 52 789-853 4-55 (73)
346 COG1729 Uncharacterized protei 58.5 40 0.00087 37.9 8.5 97 723-852 144-240 (262)
347 KOG0640 mRNA cleavage stimulat 58.3 64 0.0014 36.8 9.8 90 4-110 177-275 (430)
348 PRK15331 chaperone protein Sic 57.9 46 0.001 34.8 8.2 22 772-793 42-63 (165)
349 cd00189 TPR Tetratricopeptide 57.6 23 0.00051 30.1 5.4 12 721-732 13-24 (100)
350 KOG0265 U5 snRNP-specific prot 57.3 3.5E+02 0.0076 31.1 15.3 171 5-199 1-203 (338)
351 KOG3060 Uncharacterized conser 57.1 1.2E+02 0.0026 34.0 11.6 121 669-805 56-179 (289)
352 PF09477 Type_III_YscG: Bacter 56.4 53 0.0012 32.0 7.7 49 830-887 25-73 (116)
353 KOG2096 WD40 repeat protein [G 56.2 1.4E+02 0.0031 34.3 12.1 71 51-127 88-163 (420)
354 KOG3081 Vesicle coat complex C 56.2 2E+02 0.0044 32.6 13.1 79 713-795 113-201 (299)
355 cd02677 MIT_SNX15 MIT: domain 55.9 38 0.00082 30.7 6.4 59 725-792 4-69 (75)
356 PF10168 Nup88: Nuclear pore c 55.4 5.9E+02 0.013 33.1 21.1 75 50-127 85-179 (717)
357 PRK10370 formate-dependent nit 55.4 28 0.0006 37.3 6.5 20 715-734 80-99 (198)
358 KOG1446 Histone H3 (Lys4) meth 55.3 3.8E+02 0.0082 30.9 23.1 33 50-85 15-47 (311)
359 PF13176 TPR_7: Tetratricopept 54.2 14 0.0003 28.1 2.9 19 787-805 6-24 (36)
360 PF06552 TOM20_plant: Plant sp 54.1 41 0.00089 35.7 7.2 69 721-793 28-99 (186)
361 PF13414 TPR_11: TPR repeat; P 53.7 35 0.00077 29.1 5.8 57 783-852 6-63 (69)
362 PF13414 TPR_11: TPR repeat; P 53.1 42 0.00092 28.6 6.2 49 768-816 4-61 (69)
363 KOG0624 dsRNA-activated protei 53.0 4.4E+02 0.0096 31.0 16.1 182 651-872 170-372 (504)
364 KOG0303 Actin-binding protein 52.5 3.3E+02 0.0071 32.4 14.4 134 5-154 87-238 (472)
365 KOG0686 COP9 signalosome, subu 52.4 77 0.0017 37.6 9.6 55 764-818 147-212 (466)
366 KOG1354 Serine/threonine prote 52.1 38 0.00081 39.1 6.9 74 5-85 31-119 (433)
367 KOG1008 Uncharacterized conser 51.5 6.6 0.00014 48.2 1.0 140 49-201 102-274 (783)
368 KOG2315 Predicted translation 51.4 5.7E+02 0.012 31.7 17.7 141 26-200 145-302 (566)
369 KOG0550 Molecular chaperone (D 51.4 1.1E+02 0.0024 36.5 10.6 66 712-793 207-275 (486)
370 KOG3785 Uncharacterized conser 51.4 1E+02 0.0022 36.0 10.1 10 751-760 36-45 (557)
371 KOG0288 WD40 repeat protein Ti 51.3 1.1E+02 0.0023 36.4 10.4 57 143-201 362-418 (459)
372 KOG0624 dsRNA-activated protei 51.0 4.7E+02 0.01 30.7 17.6 102 699-804 92-213 (504)
373 PF05053 Menin: Menin; InterP 50.9 24 0.00051 43.3 5.4 83 712-823 265-355 (618)
374 KOG0551 Hsp90 co-chaperone CNS 50.6 3.7E+02 0.008 31.5 14.3 32 761-792 75-106 (390)
375 KOG0292 Vesicle coat complex C 50.3 1.8E+02 0.0038 37.9 12.7 122 723-884 649-770 (1202)
376 PF03704 BTAD: Bacterial trans 49.4 2.8E+02 0.006 27.5 14.1 51 798-852 67-121 (146)
377 KOG0306 WD40-repeat-containing 49.3 7E+02 0.015 32.2 18.5 96 25-131 127-223 (888)
378 PF07575 Nucleopor_Nup85: Nup8 49.1 4E+02 0.0087 33.4 16.2 143 712-857 301-454 (566)
379 PLN03088 SGT1, suppressor of 48.9 89 0.0019 36.7 9.9 53 787-852 43-95 (356)
380 PRK02603 photosystem I assembl 48.3 1.4E+02 0.0031 30.7 10.4 21 785-805 77-97 (172)
381 KOG0547 Translocase of outer m 48.2 59 0.0013 39.4 8.0 77 769-846 117-202 (606)
382 KOG2053 Mitochondrial inherita 48.0 6.2E+02 0.013 33.3 17.1 192 715-916 50-301 (932)
383 PLN02919 haloacid dehalogenase 47.6 8.8E+02 0.019 33.1 19.8 33 51-85 741-773 (1057)
384 PF14559 TPR_19: Tetratricopep 47.4 17 0.00036 31.1 2.7 25 828-852 26-50 (68)
385 PF13176 TPR_7: Tetratricopept 47.0 20 0.00043 27.2 2.8 24 770-793 2-25 (36)
386 KOG0303 Actin-binding protein 46.2 1.7E+02 0.0038 34.6 11.1 113 4-126 178-293 (472)
387 PRK10866 outer membrane biogen 45.9 4.6E+02 0.0099 29.1 14.7 28 766-793 68-95 (243)
388 COG5010 TadD Flp pilus assembl 45.9 1.4E+02 0.0031 33.4 10.0 39 751-793 155-194 (257)
389 KOG1128 Uncharacterized conser 45.7 1.5E+02 0.0033 37.6 11.2 201 712-925 402-620 (777)
390 PRK10866 outer membrane biogen 45.4 4.7E+02 0.01 29.0 15.1 61 783-854 36-96 (243)
391 COG5170 CDC55 Serine/threonine 45.3 29 0.00063 39.4 4.7 71 6-83 33-118 (460)
392 KOG0313 Microtubule binding pr 45.1 2.2E+02 0.0047 33.6 11.6 120 4-144 265-388 (423)
393 KOG1963 WD40 repeat protein [G 45.1 4.9E+02 0.011 33.8 15.5 156 4-201 165-323 (792)
394 PF14559 TPR_19: Tetratricopep 45.0 18 0.0004 30.8 2.6 17 801-817 33-49 (68)
395 KOG2460 Signal recognition par 44.7 1.1E+02 0.0025 37.3 9.7 68 770-852 425-493 (593)
396 PRK04841 transcriptional regul 44.6 8.6E+02 0.019 31.9 20.6 84 769-852 533-637 (903)
397 KOG1125 TPR repeat-containing 44.4 46 0.001 40.9 6.5 53 787-852 437-489 (579)
398 KOG1539 WD repeat protein [Gen 43.4 82 0.0018 40.3 8.5 66 4-81 581-647 (910)
399 COG3118 Thioredoxin domain-con 43.4 1E+02 0.0022 35.3 8.6 85 767-852 168-261 (304)
400 COG2909 MalT ATP-dependent tra 42.7 3.5E+02 0.0077 35.4 14.0 67 740-807 318-387 (894)
401 KOG1941 Acetylcholine receptor 42.6 2.7E+02 0.0058 32.9 11.7 106 761-874 240-364 (518)
402 KOG0265 U5 snRNP-specific prot 42.4 95 0.0021 35.4 8.1 71 5-85 53-123 (338)
403 PF11817 Foie-gras_1: Foie gra 42.1 1.4E+02 0.0031 33.1 9.7 39 766-810 177-215 (247)
404 KOG1156 N-terminal acetyltrans 41.8 7.1E+02 0.015 31.6 15.8 188 669-879 8-244 (700)
405 KOG0643 Translation initiation 41.5 5.8E+02 0.013 29.0 13.8 143 49-200 10-177 (327)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 41.5 59 0.0013 32.4 5.9 28 765-792 97-124 (126)
407 COG2976 Uncharacterized protei 41.1 79 0.0017 34.1 6.9 72 721-793 102-185 (207)
408 PRK15363 pathogenicity island 41.1 4.3E+02 0.0093 27.6 12.1 22 785-806 108-129 (157)
409 KOG1130 Predicted G-alpha GTPa 40.8 1.4E+02 0.003 35.6 9.3 35 813-848 302-336 (639)
410 KOG2394 WD40 protein DMR-N9 [G 40.3 27 0.00059 42.3 3.7 66 51-126 292-361 (636)
411 KOG4234 TPR repeat-containing 40.2 1.7E+02 0.0038 31.8 9.2 19 787-805 175-193 (271)
412 PF10647 Gmad1: Lipoprotein Lp 40.1 1.2E+02 0.0025 33.9 8.7 71 4-79 70-141 (253)
413 KOG0286 G-protein beta subunit 40.0 6.3E+02 0.014 29.0 16.5 170 6-199 104-302 (343)
414 PF03704 BTAD: Bacterial trans 39.7 1.7E+02 0.0036 29.2 9.0 45 784-833 100-145 (146)
415 PF15303 RNF111_N: E3 ubiquiti 39.6 34 0.00073 37.7 4.0 20 910-929 202-221 (269)
416 KOG1173 Anaphase-promoting com 38.4 8.5E+02 0.018 30.5 15.6 27 612-638 264-290 (611)
417 KOG0687 26S proteasome regulat 38.4 2.2E+02 0.0048 33.1 10.2 60 795-868 163-230 (393)
418 smart00685 DM14 Repeats in fly 38.3 59 0.0013 28.2 4.5 46 839-885 7-52 (59)
419 KOG4532 WD40-like repeat conta 38.3 3.9E+02 0.0085 30.3 11.8 102 4-116 163-270 (344)
420 KOG1174 Anaphase-promoting com 38.2 4.5E+02 0.0098 31.7 12.8 163 676-850 173-357 (564)
421 KOG1912 WD40 repeat protein [G 38.1 1.6E+02 0.0035 37.6 9.8 58 823-881 939-996 (1062)
422 COG5354 Uncharacterized protei 37.9 8.6E+02 0.019 30.0 22.4 165 4-200 37-210 (561)
423 KOG3807 Predicted membrane pro 37.6 1.3E+02 0.0029 34.7 8.3 172 740-922 227-403 (556)
424 KOG4532 WD40-like repeat conta 37.5 6.7E+02 0.014 28.6 13.4 71 51-125 160-231 (344)
425 COG4008 Predicted metal-bindin 37.2 2.2E+02 0.0047 28.4 8.6 63 817-879 87-150 (153)
426 KOG0646 WD40 repeat protein [G 36.8 2.2E+02 0.0049 34.2 10.3 126 41-199 77-205 (476)
427 PF00780 CNH: CNH domain; Int 36.5 6.1E+02 0.013 27.9 16.3 135 27-201 114-256 (275)
428 KOG1007 WD repeat protein TSSC 36.5 68 0.0015 36.3 5.8 70 6-85 177-248 (370)
429 smart00668 CTLH C-terminal to 36.0 43 0.00093 27.9 3.4 27 487-513 5-31 (58)
430 PF04121 Nup84_Nup100: Nuclear 35.7 88 0.0019 40.3 7.7 84 786-874 139-242 (697)
431 PF12854 PPR_1: PPR repeat 35.3 51 0.0011 24.8 3.3 20 858-877 11-30 (34)
432 PF07433 DUF1513: Protein of u 34.8 1.6E+02 0.0035 34.0 8.6 80 5-87 168-252 (305)
433 KOG1964 Nuclear pore complex, 34.5 1.3E+02 0.0027 38.2 8.1 89 782-874 222-327 (800)
434 smart00777 Mad3_BUB1_I Mad3/BU 34.2 4.4E+02 0.0095 26.4 10.6 26 825-850 97-122 (125)
435 PF07719 TPR_2: Tetratricopept 34.1 53 0.0011 23.7 3.3 19 787-805 8-26 (34)
436 KOG2758 Translation initiation 34.0 4.8E+02 0.01 30.4 11.9 86 767-853 69-155 (432)
437 TIGR02508 type_III_yscG type I 33.6 1E+02 0.0023 29.8 5.7 24 863-886 48-71 (115)
438 KOG4640 Anaphase-promoting com 33.5 1E+02 0.0022 38.5 7.0 64 51-123 22-88 (665)
439 COG3947 Response regulator con 33.4 2.8E+02 0.0061 31.9 9.9 38 498-539 32-69 (361)
440 PRK15331 chaperone protein Sic 33.4 2.2E+02 0.0047 30.0 8.6 21 785-805 110-130 (165)
441 PF00400 WD40: WD domain, G-be 33.2 1.4E+02 0.003 22.2 5.6 36 88-125 3-39 (39)
442 TIGR02658 TTQ_MADH_Hv methylam 33.2 6E+02 0.013 30.0 13.3 143 27-202 27-177 (352)
443 COG0819 TenA Putative transcri 33.0 6.3E+02 0.014 27.8 12.6 36 700-735 22-62 (218)
444 PF00515 TPR_1: Tetratricopept 32.9 48 0.001 24.2 2.9 19 787-805 8-26 (34)
445 COG3898 Uncharacterized membra 32.9 2E+02 0.0043 34.3 8.9 23 860-882 194-216 (531)
446 KOG3785 Uncharacterized conser 32.7 4.4E+02 0.0096 31.0 11.4 116 721-850 360-484 (557)
447 PF13934 ELYS: Nuclear pore co 32.6 2.5E+02 0.0055 30.9 9.6 33 804-838 151-183 (226)
448 KOG3630 Nuclear pore complex, 32.6 3.7E+02 0.0081 36.1 12.0 59 26-85 63-135 (1405)
449 COG4700 Uncharacterized protei 32.3 2.5E+02 0.0053 30.4 8.7 80 712-792 93-185 (251)
450 KOG0994 Extracellular matrix g 31.6 1.5E+03 0.033 30.9 24.4 49 816-867 1503-1551(1758)
451 PF08625 Utp13: Utp13 specific 31.4 4.1E+02 0.0088 27.2 10.1 72 798-872 2-75 (141)
452 PF00930 DPPIV_N: Dipeptidyl p 30.9 97 0.0021 36.1 6.4 59 3-68 46-119 (353)
453 PF07035 Mic1: Colon cancer-as 30.7 4.8E+02 0.01 27.5 10.7 82 796-882 32-117 (167)
454 PF14761 HPS3_N: Hermansky-Pud 30.7 2.7E+02 0.0059 30.5 9.1 38 159-199 125-162 (215)
455 PF10602 RPN7: 26S proteasome 30.1 3.8E+02 0.0083 28.2 10.1 30 822-851 31-60 (177)
456 PF13428 TPR_14: Tetratricopep 29.7 62 0.0013 25.6 3.2 19 787-805 8-26 (44)
457 PF07719 TPR_2: Tetratricopept 29.3 78 0.0017 22.8 3.5 26 768-793 2-27 (34)
458 KOG0300 WD40 repeat-containing 29.3 3E+02 0.0065 31.7 9.3 62 134-201 368-429 (481)
459 PF10300 DUF3808: Protein of u 29.2 4.7E+02 0.01 32.0 12.1 67 785-875 272-342 (468)
460 PF04212 MIT: MIT (microtubule 29.2 2.1E+02 0.0046 25.0 6.8 25 784-808 9-33 (69)
461 KOG0771 Prolactin regulatory e 29.1 3.2E+02 0.007 32.5 9.9 112 4-125 191-309 (398)
462 PF12657 TFIIIC_delta: Transcr 28.9 2.9E+02 0.0063 28.8 9.0 39 51-92 87-134 (173)
463 KOG0319 WD40-repeat-containing 28.7 1.4E+03 0.03 29.5 15.7 156 7-200 332-493 (775)
464 KOG0288 WD40 repeat protein Ti 28.6 1.1E+02 0.0023 36.3 5.9 65 6-80 394-459 (459)
465 KOG4648 Uncharacterized conser 28.5 2.6E+02 0.0057 32.7 8.8 30 777-806 94-123 (536)
466 KOG1128 Uncharacterized conser 28.3 95 0.0021 39.4 5.8 107 766-877 397-508 (777)
467 PF13181 TPR_8: Tetratricopept 28.2 75 0.0016 23.1 3.2 19 787-805 8-26 (34)
468 PF13431 TPR_17: Tetratricopep 28.2 72 0.0016 24.1 3.1 32 752-787 1-33 (34)
469 PF13929 mRNA_stabil: mRNA sta 28.1 79 0.0017 36.1 4.7 48 482-529 201-248 (292)
470 PLN03098 LPA1 LOW PSII ACCUMUL 27.9 3.5E+02 0.0075 33.0 10.2 54 788-851 83-136 (453)
471 KOG4162 Predicted calmodulin-b 27.8 2.5E+02 0.0055 36.0 9.3 41 691-731 525-570 (799)
472 PF13371 TPR_9: Tetratricopept 27.7 82 0.0018 27.1 3.9 20 786-805 35-54 (73)
473 COG2319 FOG: WD40 repeat [Gene 27.2 8.6E+02 0.019 26.7 18.0 150 4-197 160-311 (466)
474 KOG1310 WD40 repeat protein [G 27.0 1.3E+03 0.029 28.8 16.3 104 4-127 55-178 (758)
475 PRK07764 DNA polymerase III su 27.0 9.1E+02 0.02 31.9 14.6 29 679-707 199-227 (824)
476 PF02239 Cytochrom_D1: Cytochr 27.0 1.1E+03 0.024 27.8 17.1 171 128-378 8-187 (369)
477 COG4946 Uncharacterized protei 26.5 1.3E+03 0.028 28.4 14.2 60 51-119 403-465 (668)
478 PF05131 Pep3_Vps18: Pep3/Vps1 26.5 79 0.0017 32.5 4.0 28 299-328 74-101 (147)
479 KOG1125 TPR repeat-containing 26.4 3.1E+02 0.0067 34.1 9.4 42 751-793 444-490 (579)
480 PRK14713 multifunctional hydro 26.2 6.8E+02 0.015 31.1 13.0 37 700-736 339-380 (530)
481 cd02684 MIT_2 MIT: domain cont 26.0 1.6E+02 0.0035 26.6 5.5 17 761-777 44-60 (75)
482 KOG1058 Vesicle coat complex C 25.9 1.6E+03 0.034 29.3 19.5 191 712-912 189-428 (948)
483 COG0823 TolB Periplasmic compo 25.8 1.2E+02 0.0025 36.8 6.0 57 6-68 288-344 (425)
484 KOG1007 WD repeat protein TSSC 25.8 2.2E+02 0.0048 32.5 7.4 65 51-123 125-197 (370)
485 PF13181 TPR_8: Tetratricopept 25.7 1E+02 0.0022 22.3 3.6 28 768-795 2-29 (34)
486 KOG0268 Sof1-like rRNA process 25.6 1.7E+02 0.0037 34.3 6.7 40 159-200 179-218 (433)
487 PF06069 PerC: PerC transcript 25.5 1.1E+02 0.0024 28.9 4.4 82 769-852 2-86 (90)
488 KOG0299 U3 snoRNP-associated p 25.0 1.3E+03 0.028 28.1 18.1 181 5-201 208-411 (479)
489 COG0823 TolB Periplasmic compo 24.9 6.1E+02 0.013 30.7 11.8 100 2-110 240-339 (425)
490 PF04841 Vps16_N: Vps16, N-ter 24.9 1.3E+03 0.027 27.8 17.4 66 56-126 35-108 (410)
491 KOG2062 26S proteasome regulat 24.9 8.1E+02 0.017 31.7 12.6 146 716-869 67-238 (929)
492 PF12000 Glyco_trans_4_3: Gkyc 24.6 2.1E+02 0.0045 30.3 6.8 68 466-540 22-90 (171)
493 PF02897 Peptidase_S9_N: Proly 24.5 5.2E+02 0.011 30.5 11.2 59 4-67 128-187 (414)
494 smart00685 DM14 Repeats in fly 24.4 1.2E+02 0.0026 26.4 4.1 40 779-818 7-46 (59)
495 PF13374 TPR_10: Tetratricopep 24.3 63 0.0014 24.3 2.3 23 770-792 5-27 (42)
496 PF00244 14-3-3: 14-3-3 protei 23.6 1E+03 0.022 26.3 13.0 87 768-878 117-204 (236)
497 cd02577 PSTD1 PSTD1: Pseudouri 23.3 2.5E+02 0.0055 32.6 7.9 45 771-816 154-205 (319)
498 PRK09517 multifunctional thiam 23.3 8.9E+02 0.019 31.6 13.6 38 699-736 564-606 (755)
499 KOG1517 Guanine nucleotide bin 23.3 1.4E+03 0.031 30.8 14.7 161 26-200 1087-1287(1387)
500 PF05843 Suf: Suppressor of fo 23.0 4.9E+02 0.011 29.4 10.1 121 698-854 7-134 (280)
No 1
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=7.7e-206 Score=1828.32 Aligned_cols=1010 Identities=34% Similarity=0.483 Sum_probs=847.4
Q ss_pred CCCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccc-eeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 1 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 1 le~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~-v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
|+++|+|||||++||++|+++ ++.+|+||||||||||+|+||.|.++. |.+|+||+||+||||++.+.+.+.||||
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~---sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKT---SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred cccceeecCCCCeEeeeeecC---CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEE
Confidence 579999999999999999886 345999999999999999999988766 9999999999999999988888999999
Q ss_pred EcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeee--cCCcEEEEEeCCeEEeccCCCCCCC
Q 001314 80 FFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTALVIDGSKILVTPLSLSLMP 157 (1102)
Q Consensus 80 t~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~--~d~~~vaVIDG~~l~lTp~r~a~VP 157 (1102)
|+|||||||||++.|+.... ++|||++|.+|++++.+|++.+++|.|.++. +|.|++.||||++|++|||+.+|||
T Consensus 320 t~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDgs~llvT~ls~~vvP 397 (1265)
T KOG1920|consen 320 TTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDGSRLLVTPLSLAVVP 397 (1265)
T ss_pred EecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeCCEEEEecchhhcCC
Confidence 99999999999999987654 8999999999999999999999999999997 5789999999999999999999999
Q ss_pred CcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCce
Q 001314 158 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL 237 (1102)
Q Consensus 158 PPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 237 (1102)
||||.+++.+++++ .+ .+..+.+.+.+..++.....+..+.+..++.+.++.|...........+....+.|+..+.
T Consensus 398 PPM~~y~l~~~~~~-~~--~~~~s~~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~~~~~t~~~~~~~~~~~~~~~ 474 (1265)
T KOG1920|consen 398 PPMCSYSLLFDSNI-VV--MPAESKSALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFIGSLVTPSGHKFYLLEFSVNE 474 (1265)
T ss_pred CCceeeeecCCccc-ee--ecccccCchhhhhcccchhhhhccccCchhhcccccccccchhhhcCCcceEEEEEEeccc
Confidence 99999999999872 22 2334445556666776666566666666666666666521111224445666777887777
Q ss_pred EEEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccccccceeeeeeccCCcEEEEccCCCCCce-EE
Q 001314 238 LLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS-AF 316 (1102)
Q Consensus 238 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (1102)
...+..++.....+.+...... ..+..+...++. ++.+ .+..+. ...+ .+
T Consensus 475 ~~~v~~~~~~~~k~~~~~~~~~--~~~~~l~~~~v~-------------------------d~~~-~v~~~~-~~~h~~~ 525 (1265)
T KOG1920|consen 475 DTDVNANGSNRSKIGEVGVQET--TEHHQLCQVEVY-------------------------DHCV-GVVSSY-NFEHGLF 525 (1265)
T ss_pred ceeeecCCcchhheeeeceEEc--ccccEEEEEEEE-------------------------eccc-cchhee-eccccch
Confidence 7777666655555443221110 000111111111 1111 111111 1222 77
Q ss_pred EEeeCceEEEEecccc---c-CCCCccCCCCCCCCCCCceEEEEecCCCCCcceEEEEcCCcceEeCCEeeecCceeEEE
Q 001314 317 LQFHGGKISEYMSRVG---L-TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSF 392 (1102)
Q Consensus 317 ~q~~~G~v~~~~~~~~---~-~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~~~gLs~~g~L~~n~~~la~n~tSF~v 392 (1102)
+++.+|.|+.++.+.. + ............|.+|+|..+..++. +.+.|||++.|+|++|++.|++||+||.+
T Consensus 526 ~~~~dg~Iv~~~~~~i~k~i~~~~s~ei~~~~sp~~~~d~~~~~v~~----~~v~~glts~~~~~~n~~~l~~~~~sf~~ 601 (1265)
T KOG1920|consen 526 LLAGDGVIVSLCDNGIHKGIGIAPSLEIVELKSPSPCHDGNVAFVDE----DTVEFGLTSFGRLFINQILLSSNVSSFFF 601 (1265)
T ss_pred hhcCCceEEEcccCCccccccccccccEEEecCCccccccceeeecc----ccccccccceeEEEEeeEEeecCceEEEE
Confidence 8899999999875431 1 11222233456799999999988764 34789999999999999999999999999
Q ss_pred ecCCccccceEEEEEecCCeEEEEEcCcccccccccccccccccCCCcccccccccccccCCCEEEEEecCCCcEEEEEc
Q 001314 393 YSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQT 472 (1102)
Q Consensus 393 ~~~~~~~~~~~Ll~TT~~h~l~fv~L~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~VERGs~lV~~vp~~~~~vVLQm 472 (1102)
+++ |+++||++|.|.|+++.+....+++... ++..++ .||++|.|||||+||+++|++ ++|||||
T Consensus 602 ~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~-----~~~~~~--~~E~vr~vErGsklVa~~~~k-a~VvLQ~ 666 (1265)
T KOG1920|consen 602 YSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVE-----DDESGR--HDERVRNVERGSKLVAVVPQK-AAVVLQM 666 (1265)
T ss_pred ehh-------hhhHHHHHhhhhhheeeeeeecchhhcc-----cccccc--cchhhhhhhhcceEEEeccch-hhHhHhh
Confidence 999 9999999999999999775433333321 111122 689999999999999999998 9999999
Q ss_pred CCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchHHHHHhhccCC
Q 001314 473 NRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNE 552 (1102)
Q Consensus 473 PRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~lnLFls~L~~e 552 (1102)
|||||||||||+|||+.||.+|++++|++||.+|||||||||+|+||+ |+.|++|++.||+|+++++||||||++|++|
T Consensus 667 ~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~afl~~in~~~~l~lfl~~lk~e 745 (1265)
T KOG1920|consen 667 PRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVPAFLKQINRVNHLELFLTELKEE 745 (1265)
T ss_pred cCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHHHHhccCCcHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred chhhhhcccccccCCCccccccCCCccccCCCCCCcHHHHHHHHHHHHhhcCCCCCCcchhhhhHhHhcCCccHHHHHHH
Q 001314 553 NITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALER 632 (1102)
Q Consensus 553 dvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~IC~air~~l~~~~~~~~~~~l~IlTa~v~k~Pp~le~aL~~ 632 (1102)
|||+|||+.+ .... +. .-....+.++|||+||++||++|+++.++ +|.|+|||+|||++||.+|+||++
T Consensus 746 Dvtk~~y~~~--~~s~--k~-----~~~~r~~~d~kv~~vc~~vr~~l~~~~~~--~~~~~ilTs~vk~~~~~ie~aL~k 814 (1265)
T KOG1920|consen 746 DVTKTMYSST--SGSG--KQ-----VYMSRDPYDNKVNSVCDAVRNALERRAPD--KFNLFILTSYVKSNPPEIEEALQK 814 (1265)
T ss_pred hhhhhhcccc--cccc--ce-----eEEeccchhhHHHHHHHHHHHHHhhcCcc--hhhHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999976 2111 00 01112335799999999999999997655 689999999999999999999999
Q ss_pred HHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChhh
Q 001314 633 IKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL 712 (1102)
Q Consensus 633 i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~ 712 (1102)
|+.+++.. ..+.|++||+|||||||||.|||+|||+|||+||++|||+|||||||||||||+|++||+++
T Consensus 815 I~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~ 884 (1265)
T KOG1920|consen 815 IKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLL 884 (1265)
T ss_pred HHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhchhhh
Confidence 99998411 24589999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHH
Q 001314 713 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYF 791 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~ 791 (1102)
|||.||+|||||++|+.||.++|..+|++|++|+++| +||++||.|| .|+++++.++.+||+||++.+.|++|+.+|+
T Consensus 885 rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 885 RKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred hheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999988999999999999 9999999999 9999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHH
Q 001314 792 CCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWE 871 (1102)
Q Consensus 792 ~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~ 871 (1102)
++|+.+||++||.+||+|++|+.+|.++..+++++..++++|+..|.++|+|.|||+|.++||+|+++|+.+||+|+.|+
T Consensus 964 ~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 964 RCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWE 1043 (1265)
T ss_pred HhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccccc
Q 001314 872 EALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSET 950 (1102)
Q Consensus 872 eA~rLa~~h~~~dL~et-v~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~~r~~~~~~~~~e~~~~~d~~~D~~Sea 950 (1102)
+|+|+|..+++.|++++ +.|++++......+.+++++++|.+|++||++||++|++.+..+.+++. ..|.|+|..|++
T Consensus 1044 eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~~~~~~~~ev-~~d~d~dlas~s 1122 (1265)
T KOG1920|consen 1044 EALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKRPEAFADGEV-EHDLDDDLASES 1122 (1265)
T ss_pred HHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcccc-Cccccccccccc
Confidence 99999999999999999 5666655555555557999999999999999999999765544443332 236667888888
Q ss_pred cccccCCceeeeccccccCCcccccchhccchhhhHHHhccCCCCCCChhhhHHHHHHHhhhc-cccchHHHHHHHHHHH
Q 001314 951 SSTFSGMSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMS-LTVGAKQELKSLVVFL 1029 (1102)
Q Consensus 951 ss~~s~~S~yT~~s~t~~~s~~s~~S~~~s~~~rrr~erK~~~~k~Gs~~Eee~Lv~sl~~l~-~~~~~~~ev~~Ll~~L 1029 (1102)
||+.+| |.||++ ++ .|. +|+|+.|||||.||||++|||||||||+|||++|++++ .++++++|+++||++|
T Consensus 1123 sS~~~~-s~ysG~---sr---~S~-~s~~tsKnrR~~ERKr~s~K~G~~yEd~aLl~~L~~~~~~le~~r~E~~~Ll~~l 1194 (1265)
T KOG1920|consen 1123 SSTNSG-SQYSGS---SR---SSA-ISARTSKNRRKLERKRASLKEGGPYEDEALLNALSEIARRLENIRNELKRLLEVL 1194 (1265)
T ss_pred cccccc-ccccCC---CC---ccc-cchhhhhcchhHHHHhhccCCCCchhHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 887776 655544 12 223 44788888989999999999999999999999999987 5899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhcc-CCChHHHHHHHhhccCCccccccccccccCC
Q 001314 1030 VMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIINEH-AHNMERYVQIVKLESQNSEAFSWRSKVFLSP 1102 (1102)
Q Consensus 1030 v~~~~~e~A~~lQ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 1102 (1102)
+++||+++|++||++|+++.+..+.++..||.- .+-.+ ..+-+.++|+.+.+.|+...++|..++..|+
T Consensus 1195 ~~~g~~eqa~~Lq~~f~ev~~~i~~~~~eI~~~----~~s~~~~~~gpn~~qk~~~p~~~~p~~~~~~kl~i~~ 1264 (1265)
T KOG1920|consen 1195 VTFGMDEQARALQKAFDEVLQAIQASLDEIWTV----ELSLNSHLLGPNDPQKTPRPALDSPLFSPFPKLVIPD 1264 (1265)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHhhhhhhcCh----hhhccccccCCcccccCcCCCCCCcccccchhhhcCC
Confidence 999999999999999999999999999999963 11112 2233448888888888999999999998875
No 2
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=100.00 E-value=2.3e-170 Score=1595.13 Aligned_cols=657 Identities=35% Similarity=0.605 Sum_probs=550.6
Q ss_pred CCCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC-ccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 1 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 1 le~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~-~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
||++|+|||||||||++||++ ++++||||||||||||||+||. +.+..|+.|+||+||+|||||+ .+.||||
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~---~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~----~~~vqLW 330 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLP---DRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL----EDRVQLW 330 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcC---CCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe----cCCceEE
Confidence 789999999999999999964 5899999999999999999997 6678899999999999999999 5669999
Q ss_pred EcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeec------CCcEEEEEeCCeEEeccCC
Q 001314 80 FFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM------ENSTALVIDGSKILVTPLS 152 (1102)
Q Consensus 80 t~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~------d~~~vaVIDG~~l~lTp~r 152 (1102)
|+|||||||||||+|+.... ..++||||+|++||++|.+|++..++|.|.++.+ |.|+|+||||++|++||||
T Consensus 331 t~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~ 410 (928)
T PF04762_consen 331 TRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFR 410 (928)
T ss_pred EeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccc
Confidence 99999999999999998766 4599999999999999999999999999999954 7899999999999999999
Q ss_pred CCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccC---Cceeee---eeccccccCc
Q 001314 153 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG---TEFVVE---ACISETAFGS 226 (1102)
Q Consensus 153 ~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~---~~~~~~---~~~~~~~~~~ 226 (1102)
.+|||||||+++++++++|++|+|+++++. +++++++|+|.+|.++..+.+....+ ..+... ..........
T Consensus 411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~--~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (928)
T PF04762_consen 411 RAVVPPPMSSYELELPSPVNDVAFSPSNSR--FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGS 488 (928)
T ss_pred ccCCCchHhceEEcCCCCcEEEEEeCCCCe--EEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccccccc
Confidence 999999999999999999999999998764 89999999999999876554421111 011100 0112344568
Q ss_pred eEEEEEecCceEEEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccccccceeeeeeccCCcEEEEc
Q 001314 227 VIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIA 306 (1102)
Q Consensus 227 ~~~~~w~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1102)
++|++|++++.++++...+... ..+....+. + .............++.+..+.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~------------------~--------~~~~~~~~~~~~~~~~~~~~~ 541 (928)
T PF04762_consen 489 LRQLAWLNDDTLLVLSDSDSNQ-SKIVLVDID------------------D--------SENSASVESSTEVDGVVLIIS 541 (928)
T ss_pred EEEEEEeCCCEEEEEEecCccc-ceEEEEEec------------------c--------CCCceeEEEEeccCceEEEEe
Confidence 9999999999888875443111 111111110 0 001122333344566666665
Q ss_pred cCCCCCceEEEEeeCceEEEEecccccCCCCccCCCCCCCCCCCceEEEEecCCCCCcceEEEEcCCcceEeCCEeeecC
Q 001314 307 PNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNN 386 (1102)
Q Consensus 307 ~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~~~gLs~~g~L~~n~~~la~n 386 (1102)
..+.. ..+++|+.+|+++.++..... ....+||++|+|++++.++.+.. +.++|||+++|+||+|+++||+|
T Consensus 542 ~~~~~-~~~~~q~~~G~v~~~~~~~~~------~~~~~fp~~c~~~~~~~~~~~~~-~~~~~GLs~~~~Ly~n~~~la~~ 613 (928)
T PF04762_consen 542 SSPDS-GSLYIQTNDGKVFQLSSDGEL------SQIVKFPQPCPWMEVCQINGSED-KRVLFGLSSNGRLYANSRLLASN 613 (928)
T ss_pred eCCCC-cEEEEEECCCEEEEeecCCCc------cccccCCCCCcEEEEEEECCccc-eeEEEEECCCCEEEECCEEEecC
Confidence 55432 369999999999988754332 22378999999999998763211 34899999999999999999999
Q ss_pred ceeEEEecCCccccceEEEEEecCCeEEEEEcCcccccccccccccccccCCCcccccccccccccCCCEEEEEecCCCc
Q 001314 387 CSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEA 466 (1102)
Q Consensus 387 ~tSF~v~~~~~~~~~~~Ll~TT~~h~l~fv~L~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~VERGs~lV~~vp~~~~ 466 (1102)
||||.++++ ||||||.+|+|+||||+. ...+++++.+. .....||++|+||||||||||+|++ +
T Consensus 614 ~tSF~v~~~-------~Ll~TT~~h~l~fv~L~~-~~~~l~~~~~~-------~~~~~de~~R~VERGsriVt~vp~~-~ 677 (928)
T PF04762_consen 614 CTSFAVTDS-------FLLFTTTQHTLKFVHLNS-SVEDLEIPPDS-------PENSYDERCRRVERGSRIVTAVPSD-T 677 (928)
T ss_pred CceEEEEcC-------EEEEEecCceEEEEECcC-chhhcccccCc-------cccccccccccCccCCEEEEEeCCC-c
Confidence 999999999 999999999999999982 12344443211 1111589999999999999999998 9
Q ss_pred EEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchHHHHH
Q 001314 467 AVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFV 546 (1102)
Q Consensus 467 ~vVLQmPRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~lnLFl 546 (1102)
+||||||||||||||||+|||+.||++|++++|++||.+||||||||||||||| |++||+||+.||+||+++|||||||
T Consensus 678 ~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~-p~~Fl~ni~~Fv~qi~~~~~lnLFl 756 (928)
T PF04762_consen 678 SVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHN-PEQFLENIELFVEQIKDVDYLNLFL 756 (928)
T ss_pred eEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECC-HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred hhccCCchhhhhcccccccCCCccccccCCCccccCCCCCCcHHHHHHHHHHHHhhcCCCCCCcchhhhhHhHhcCCccH
Q 001314 547 CAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPAL 626 (1102)
Q Consensus 547 s~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~IC~air~~l~~~~~~~~~~~l~IlTa~v~k~Pp~l 626 (1102)
|+|+|||||+|||+++ +....... ..........++|||+||+|||++|++. .+..+|++|||||||||+||+|
T Consensus 757 s~L~~EDvt~tmY~~~--~~~~~~~~---~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~l 830 (928)
T PF04762_consen 757 SSLRNEDVTKTMYKDT--YPPSSEAQ---PNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDL 830 (928)
T ss_pred Hhcccccccccccccc--cccccccc---cccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhH
Confidence 9999999999999998 41110000 0111112236899999999999999842 4566899999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHh
Q 001314 627 EEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 706 (1102)
Q Consensus 627 e~aL~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~ 706 (1102)
|+||++|++||+. +.++||+||||||||||||+||++|||||||+||+||||||||||||||||||+|+
T Consensus 831 e~aL~~I~~l~~~-----------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~ 899 (928)
T PF04762_consen 831 EEALQLIKELREE-----------DPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQ 899 (928)
T ss_pred HHHHHHHHHHHhc-----------ChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 9999999999952 56799999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhchhHHHhhhcHHHHHHHHHHcC
Q 001314 707 SMPPLLMRYTIDLRLQRFENALKHIVSMG 735 (1102)
Q Consensus 707 ~le~~~rr~~Id~~LkryekAl~hl~~~g 735 (1102)
+||+++|||+||+|||||++||+||++||
T Consensus 900 ~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 900 KLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred hCChhheeeeHhhhhCCHHHHHHHHHhhC
Confidence 99999999999999999999999999997
No 3
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=100.00 E-value=6.5e-169 Score=1440.54 Aligned_cols=948 Identities=24% Similarity=0.304 Sum_probs=784.1
Q ss_pred CCCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 1 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 1 le~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
+|+.|||+|+|+++|+.+-. +.....+|+||||||||||||+|+.+.++++..+.||..|++|||.. .+.|||||
T Consensus 248 ~e~~LSWkpqgS~~ati~td-~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~----~n~~~lwt 322 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTD-GCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE----GNLLKLWT 322 (1243)
T ss_pred chhccccccCCceeeeeccC-CCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh----cceEEEEE
Confidence 57899999999999999843 23346799999999999999999988888999999999999999987 78999999
Q ss_pred cccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeee------ecCCcEEEEEeCCeEEeccCCCC
Q 001314 81 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------VMENSTALVIDGSKILVTPLSLS 154 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~------~~d~~~vaVIDG~~l~lTp~r~a 154 (1102)
++|||||||+|++.+.. ..++||||+..+|++ +.+|.+....|..... ..|+|+..||||+.+++|||..+
T Consensus 323 tkNyhWYLK~e~~ip~~--s~vkwhpe~~nTl~f-~d~~~I~~V~f~~k~~~~~s~~p~d~g~~~ViDGs~~l~Tplsl~ 399 (1243)
T COG5290 323 TKNYHWYLKVERQIPGI--SYVKWHPEEKNTLLF-RDGERILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLYTPLSLK 399 (1243)
T ss_pred ccceEEEEEEeecCCCc--ceeeeccccCcEEEE-ecCCeEEEEEeehhhhcCCcccCccCCceEEEcCceEEecchhhh
Confidence 99999999999998643 248999999999999 7778899888886554 34899999999999999999999
Q ss_pred CCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccC---ceEEEE
Q 001314 155 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG---SVIHLI 231 (1102)
Q Consensus 155 ~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~ 231 (1102)
|+||||+.+.+.+|.+|.+|+.+..+.. .+.+-++.+..|.|+..+.+.... +|. ...|. .+.++.
T Consensus 400 n~PPPm~~~~~~~d~NV~dv~~s~~~~~---~aa~~~drli~f~~~s~e~i~k~~--ef~------~sef~s~v~f~~~l 468 (1243)
T COG5290 400 NLPPPMFSVRVGFDTNVVDVFPSFAEKK---GAALLRDRLIMFRWDSEEFINKRT--EFL------ESEFDSIVLFDGFL 468 (1243)
T ss_pred cCCCCeEEEEecCCCceeeeccchhhhh---HhhhccceeEEEecCcHHHHHHhc--ccc------HHhhhhhccccceE
Confidence 9999999999999999999997655432 444677889999998765543211 121 12222 356667
Q ss_pred EecCceEEEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccccccceeeeeeccCCcEEEEccCCCC
Q 001314 232 WLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAK 311 (1102)
Q Consensus 232 w~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (1102)
.+.++.++.+. +....+ .+|+.. |+++..+-..+. ++..-.++..+...
T Consensus 469 ~l~~~~v~ll~-dtnn~s--------------~~~i~~----~~d~~e~~k~~~------------ve~~~~~~l~~~~c 517 (1243)
T COG5290 469 VLKSGHVFLLK-DTNNES--------------DTYITR----NGDVDERKKRGT------------VETRRTSTLVHQLC 517 (1243)
T ss_pred EecCceEEEEe-ccCCCc--------------ceEEee----cCcccchhhccc------------eeeeeeehhhHHHH
Confidence 77766544432 222222 222211 122211111111 11111122333334
Q ss_pred CceEEEEeeCceEEEEecccccCCCCccCCCCCCCCCCCceEEEEecCCCCCcceEEEEcCCcceEeCCEeeecCceeEE
Q 001314 312 KYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFS 391 (1102)
Q Consensus 312 ~~~~~~q~~~G~v~~~~~~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~~~gLs~~g~L~~n~~~la~n~tSF~ 391 (1102)
+..+++++.+|+|..|+....+ ...++||++|..+.+.++++ ..+.|||++.|+||++..++++.|+||.
T Consensus 518 ~~~l~y~t~~G~v~~yn~e~kl------~e~~kfp~~v~df~v~pVH~----t~v~igit~~g~lfa~qvll~~~V~s~~ 587 (1243)
T COG5290 518 QTLLRYGTCVGVVKHYNFEEKL------YELLKFPNGVIDFSVDPVHS----TLVAIGITDIGQLFALQVLLKKSVFSHN 587 (1243)
T ss_pred HHHHhhcccceeEEEecchhhh------HHHhhCCCceeEEEeecccc----ceeeeecccHHHHHHHHHHHHhhhheee
Confidence 4667899999999999754322 22468999999999988764 2478999999999999999999999999
Q ss_pred EecCCccccceEEEEEecCCeEEEEEcCcccccccccccccccccCCCcccccccccccccCCCEEEEEecCCCcEEEEE
Q 001314 392 FYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQ 471 (1102)
Q Consensus 392 v~~~~~~~~~~~Ll~TT~~h~l~fv~L~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~VERGs~lV~~vp~~~~~vVLQ 471 (1102)
.|.. |++|||++|.|.||||... .+++..- ..|.-+. .||+||.|||||++|.++|+. +.||||
T Consensus 588 ~T~~-------FvlftTt~n~l~Fvhl~st-~~~l~~V-----eeg~v~~--~dEr~r~vergs~~v~~lpsk-~~vVlq 651 (1243)
T COG5290 588 GTKL-------FVLFTTTENILSFVHLEST-FKPLITV-----EEGTVRF--FDERKRSVERGSHKVELLPSK-DFVVLQ 651 (1243)
T ss_pred ccee-------EEeecchhhhhheEEeecc-cccceee-----cccchhh--hhhhHHHhhhcceeeEeeccc-ceEEEe
Confidence 9999 9999999999999999654 2233221 1122121 589999999999999999998 999999
Q ss_pred cCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchHHHHHhhccC
Q 001314 472 TNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINN 551 (1102)
Q Consensus 472 mPRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~lnLFls~L~~ 551 (1102)
||||||||||||+|||+.||++|.+++|++||..||+|||||||++||+ |+.|++|++.||+|+.++|||+||+++|++
T Consensus 652 ~tRGnLETiyPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~Dyd-pelfienlevFv~~~~rvdyl~lF~~~L~~ 730 (1243)
T COG5290 652 VTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYD-PELFIENLEVFVTECRRVDYLSLFSEALQR 730 (1243)
T ss_pred cccCcceeecceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCC-hHHHHhhHHHHHHhhhhhhHHHHHHHhcCh
Confidence 9999999999999999999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred CchhhhhcccccccCCCccccccCCCccccCCCCCCcHHHHHHHHHHHHhhcCCCCCCcchhhhhHhHhcCCccHHHHHH
Q 001314 552 ENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALE 631 (1102)
Q Consensus 552 edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~IC~air~~l~~~~~~~~~~~l~IlTa~v~k~Pp~le~aL~ 631 (1102)
+|||+|||... .+ ..+ ........++|||.+|+++|+.|++.. -..+++++|+|||+|.+||++++||.
T Consensus 731 ddvt~~~ys~i--sk-S~q-------~~~~~k~fD~kvnl~ck~~rehl~s~~-y~d~~~qtiitayl~~np~n~~aal~ 799 (1243)
T COG5290 731 DDVTKTDYSFI--SK-SEQ-------ARRFRKVFDLKVNLECKDTREHLESLI-YNDESIQTIITAYLIGNPGNGKAALM 799 (1243)
T ss_pred hhccccchhhh--hH-HHH-------HHHHHHHhcchhhhccHHHHHHHHhhh-ccchhHHHHHHHHHhcCCcchHHHHh
Confidence 99999999875 21 111 011122246899999999999998742 33457899999999999999999999
Q ss_pred HHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChh
Q 001314 632 RIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPL 711 (1102)
Q Consensus 632 ~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~ 711 (1102)
+|+.|-. ..++.+++++|||||+|+|-+|+.||++||+.||++|||+|||||+||||||+++|.++..
T Consensus 800 ~is~l~r------------~se~~d~~v~~lCfl~dvn~~~~~aLsLyd~slalliaq~sqkdpReylpfl~e~qd~e~l 867 (1243)
T COG5290 800 RISPLSR------------CSESLDEDVKNLCFLRDVNFFNEFALSLYDKSLALLIAQLSQKDPREYLPFLVERQDLEAL 867 (1243)
T ss_pred hhhhhhh------------ccccchHHHHhHhhhhhHHHHHHHHhHHHHHHHHHHHHHHhccCchhhhhHHHHhhhhHHH
Confidence 9997741 2347889999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTY 790 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y 790 (1102)
+|+|.||+||++|++|+.|+.+.. .-++|.++|+..| .+|+.+|.+| +|.+..+.++..||.||.+.+.+.+|+.+|
T Consensus 868 rrkf~Id~yl~~ye~ALghl~E~~-n~~~Ev~~yi~~h-dly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~ay 945 (1243)
T COG5290 868 RRKFSIDNYLSIYESALGHLNEDL-NVIREVMKYICRH-DLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAY 945 (1243)
T ss_pred HhHhchhhhHHHHHHHHHhhHhHH-HHHHHHHHHHHhc-cchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999999999974 3489999999999 9999999999 999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHH-HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 001314 791 FCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCE-ELQALGKPGEAAKIALDYCGDVTNGISLLIDARD 869 (1102)
Q Consensus 791 ~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~-~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~ 869 (1102)
+..|++.+|+.+|..|+.|++|++++.+- ...+++..|+.++. .+.+.++|.+|+.|.+.|+.++.+|+.|+|+|.+
T Consensus 946 e~~gK~~Ea~gay~sA~mwrec~si~~q~--~~~e~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava~~ckgs~ 1023 (1243)
T COG5290 946 EVEGKYIEAHGAYDSALMWRECGSISTQE--KGYEFNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAMDCKGSE 1023 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhh--cchHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHHHHccccc
Confidence 99999999999999999999999999774 24467888888887 5556777999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccccCCCCCCCCcc
Q 001314 870 WEEALRVAFMHRREDLITKVKHASLECASSLIGEY-KEGLEKVGKYLTRYLAVRQRRLLLV-AKLQSEDRSMNDLDDDTV 947 (1102)
Q Consensus 870 W~eA~rLa~~h~~~dL~etv~~a~l~~a~~~~~el-~e~~~~~~k~~~RL~~lR~~r~~~~-~~~~~e~~~~~d~~~D~~ 947 (1102)
|++|++.|...+..++.+.+..++|.+.++...|+ ++++.|++.|..||+++|.+|.+++ +++.. + ..+.-.|.+
T Consensus 1024 y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~e~p~a~~~~--~-~e~~t~dDv 1100 (1243)
T COG5290 1024 YREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKCEMPEAREIL--R-EELLTLDDV 1100 (1243)
T ss_pred chHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcChHHHHhh--h-hhhcCccch
Confidence 99999999998888887888888888889888885 9999999999999999999985533 22221 1 123345668
Q ss_pred ccccccccC-CceeeeccccccCCcccccchhccchhhhHHHhccCCCCCCChhhhHHHHHHHhhhc-cccchHHHHHHH
Q 001314 948 SETSSTFSG-MSVYTTGSSTRKSSAASIKSTAASKARESKRQRNRGKIRPGSPGEEMALVDHLKGMS-LTVGAKQELKSL 1025 (1102)
Q Consensus 948 Seass~~s~-~S~yT~~s~t~~~s~~s~~S~~~s~~~rrr~erK~~~~k~Gs~~Eee~Lv~sl~~l~-~~~~~~~ev~~L 1025 (1102)
|++++..|. .|.||++ | +++-.|-.| +++.||.||.||||+||||||+|||||||++|+||+ ++.+++.|+.+|
T Consensus 1101 s~a~~~~st~~s~~t~y--t-k~~~~sk~s-r~ttkN~rr~erkRargkkGt~yEeEylv~sirrli~rl~~~rpe~~rl 1176 (1243)
T COG5290 1101 SEAFVKYSTRLSALTEY--T-KDECMSKTS-RSTTKNMRRGERKRARGKKGTRYEEEYLVSSIRRLILRLVGWRPETERL 1176 (1243)
T ss_pred hhhhhhhhhHHHHHHHH--h-cccccchhh-hhhhhhcccchhhhhcCCCCceehHHHHHHHHHHHHHHHhccChhHHHH
Confidence 888865544 6788888 4 211122234 556667779999999999999999999999999998 589999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 1026 VVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLA 1059 (1102)
Q Consensus 1026 l~~Lv~~~~~e~A~~lQ~~~~~~~~~~~~a~~~~ 1059 (1102)
+++|+++||.++|+++|++|.++...+..-|+.|
T Consensus 1177 ve~l~r~nM~eqa~~~q~nF~eV~~~ik~~V~~I 1210 (1243)
T COG5290 1177 VEILKRFNMEEQARAHQTNFDEVGRAIKTEVDSI 1210 (1243)
T ss_pred HHHHHHcChHHHHHHHhhhHHHHHHHHhhcccee
Confidence 9999999999999999999999998777766544
No 4
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-22 Score=232.23 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=188.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHhcCCcchh--hHHHHHHhcC-ChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHH
Q 001314 670 AVYEAALGLYDLNLAAIVALNSQRDPKEF--LPYLQELESM-PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM 746 (1102)
Q Consensus 670 ~Ly~~ALg~YDl~Lal~VAq~sqkDPkEY--LpfL~~L~~l-e~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~ 746 (1102)
-|.+.||...+|+ .|+|++..+++| +.|+++|+.+ .+..|+++|..|.|+||+|.+.|..+ +|.|.|++++
T Consensus 697 llAe~Al~Kl~l~----tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--drrDLAielr 770 (1189)
T KOG2041|consen 697 LLAEYALFKLALD----TAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--DRRDLAIELR 770 (1189)
T ss_pred HHHHHHHHHHhhh----hHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--chhhhhHHHH
Confidence 3578888777766 569999999999 9999999998 67899999999999999999999998 4589999999
Q ss_pred HHHhcchHHHHhcc-C-----CcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcC
Q 001314 747 KKYAQLFPLGLKLI-T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK 820 (1102)
Q Consensus 747 ~~~~~Ly~~AL~L~-~-----d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~ 820 (1102)
++. +.|.+.++|+ . |++.....++.+|+|+.+..+|++|+.+|.++|+.+.-++||++..++.++..+|+.++
T Consensus 771 ~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 771 KKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLP 849 (1189)
T ss_pred Hhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcC
Confidence 999 9999999999 1 44556688999999999999999999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhh
Q 001314 821 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 885 (1102)
Q Consensus 821 ~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL 885 (1102)
.++ +++..+|+.|.+.|++.+|.+.|++ .++++.|+..|+..+||.+|+.||..|..|++
T Consensus 850 e~s----~llp~~a~mf~svGMC~qAV~a~Lr-~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 850 EDS----ELLPVMADMFTSVGMCDQAVEAYLR-RSLPKAAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred ccc----chHHHHHHHHHhhchHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 554 6899999999999999999999998 99999999999999999999999999988774
No 5
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.82 E-value=2.1e-19 Score=207.56 Aligned_cols=284 Identities=18% Similarity=0.241 Sum_probs=223.8
Q ss_pred hhhhhHhHhcCCccHHHHHHHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhcc----CHHHHHHH
Q 001314 612 LCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY----DLNLAAIV 687 (1102)
Q Consensus 612 l~IlTa~v~k~Pp~le~aL~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~Y----Dl~Lal~V 687 (1102)
|.-|.-|+|...|. .|+..+. -..+|. .-++-|+||.--.=-.+||+.|=.+| ||+-|+..
T Consensus 619 laaiqlyika~~p~--~a~~~a~--n~~~l~-----------~de~il~~ia~alik~elydkagdlfeki~d~dkale~ 683 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPA--KAARAAL--NDEELL-----------ADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALEC 683 (1636)
T ss_pred HHHHHHHHHcCCch--HHHHhhc--CHHHhh-----------ccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHH
Confidence 56778888887664 2222211 111221 23566777754333456788876655 56655444
Q ss_pred HHH--hcCCcchh--hHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc---
Q 001314 688 ALN--SQRDPKEF--LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--- 760 (1102)
Q Consensus 688 Aq~--sqkDPkEY--LpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~--- 760 (1102)
..+ +++..-|. +.|-.++-+|++.|+.... +.|+|+.|++||+++++ .-+|++..... +.|++|+.+.
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~--~~~q~daainhfiea~~--~~kaieaai~a-kew~kai~ildni 758 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE--QIGQLDAAINHFIEANC--LIKAIEAAIGA-KEWKKAISILDNI 758 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH--HHHhHHHHHHHHHHhhh--HHHHHHHHhhh-hhhhhhHhHHHHh
Confidence 332 11111111 5667778888899998876 59999999999999988 88999999998 9999999998
Q ss_pred CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHc
Q 001314 761 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 840 (1102)
Q Consensus 761 ~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~ 840 (1102)
.|......++-..|+|+.+.++|+-|..+|..++.+..|++||.++|.|.+|+.++... +.++....++..-|+.|.+.
T Consensus 759 qdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~-~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 759 QDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEEC-HGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred hhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHh-cCchhHHHHHHHhHHhHHhh
Confidence 35445557788899999999999999999999999999999999999999999999988 56777888999999999999
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHH-HHHh-------HHHHHHHHHHHHHHHHHHHH
Q 001314 841 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHA-------SLECASSLIGEYKEGLEKVG 912 (1102)
Q Consensus 841 g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~et-v~~a-------~l~~a~~~~~el~e~~~~~~ 912 (1102)
|+|.||+++|.. .|.|+.||+||-+.+..++++||+.+|+..-+-+| .+-+ -|++|+.+..+.+||++.++
T Consensus 838 gkf~eaeqlyit-i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavn 916 (1636)
T KOG3616|consen 838 GKFAEAEQLYIT-IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVN 916 (1636)
T ss_pred cchhhhhheeEE-ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHH
Confidence 999999999987 99999999999999999999999999986555555 3333 35789999999999999999
Q ss_pred HHHHH
Q 001314 913 KYLTR 917 (1102)
Q Consensus 913 k~~~R 917 (1102)
||+.-
T Consensus 917 myk~s 921 (1636)
T KOG3616|consen 917 MYKAS 921 (1636)
T ss_pred Hhhhh
Confidence 99763
No 6
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=194.20 Aligned_cols=215 Identities=23% Similarity=0.305 Sum_probs=189.0
Q ss_pred hcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcC------ChhhhchhHHHhhhcHHHHHHHHHHcCCCc
Q 001314 665 LADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESM------PPLLMRYTIDLRLQRFENALKHIVSMGDSY 738 (1102)
Q Consensus 665 LvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~l------e~~~rr~~Id~~LkryekAl~hl~~~g~~~ 738 (1102)
..|=..|.+.||...||+.|....-+- +|-+ ||.++-+|+.+ |...-+++|-+|.|+|.+|.+.|.++|.
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rV-Rdl~-~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~-- 660 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRV-RDLR-YLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGH-- 660 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHH-hccH-HHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCc--
Confidence 345567899999999999765444332 4443 78888888876 4567789999999999999999999997
Q ss_pred HHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHH
Q 001314 739 HADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVA 816 (1102)
Q Consensus 739 ~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA 816 (1102)
-..|+||+.+. ++|+.|.+.+ +++++.+.+.++-|+|..+.++.+.||++..+||+.+||++.-...|+-+.++.++
T Consensus 661 enRAlEmyTDl-RMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 661 ENRALEMYTDL-RMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred hhhHHHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 58999999999 9999999999 78899999999999999999999999999999999999999999999888889999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHH
Q 001314 817 GLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVK 890 (1102)
Q Consensus 817 ~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~ 890 (1102)
++++.+ | ++-+..+|..|...+.+.-|++||.. +||...-|+|+++.++|.||++||..| |+++++|.
T Consensus 740 rkld~~--e-re~l~~~a~ylk~l~~~gLAaeIF~k-~gD~ksiVqlHve~~~W~eAFalAe~h--Pe~~~dVy 807 (1081)
T KOG1538|consen 740 RKLDKA--E-REPLLLCATYLKKLDSPGLAAEIFLK-MGDLKSLVQLHVETQRWDEAFALAEKH--PEFKDDVY 807 (1081)
T ss_pred hhcchh--h-hhHHHHHHHHHhhccccchHHHHHHH-hccHHHHhhheeecccchHhHhhhhhC--cccccccc
Confidence 998654 3 34678899999999999999999976 999999999999999999999999999 68888854
No 7
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.57 E-value=3.9e-10 Score=139.65 Aligned_cols=319 Identities=18% Similarity=0.183 Sum_probs=181.0
Q ss_pred cccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchHHHHHhhcc---CCchh
Q 001314 479 CMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAIN---NENIT 555 (1102)
Q Consensus 479 tI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~lnLFls~L~---~edvt 555 (1102)
+--||.-.+..-.+++-...++ |-..|..-|-||--||++. -.. +.+.+-+.+-.|..-|..+.+ |-|+.
T Consensus 638 ~~~E~vr~vErGsklVa~~~~k-a~VvLQ~~RGNLEtI~pR~-lVL-----a~vr~~l~~~~y~~AF~~~RkhRidlnii 710 (1265)
T KOG1920|consen 638 RHDERVRNVERGSKLVAVVPQK-AAVVLQMPRGNLETIYPRI-LVL-----AKVRTLLDRLRYKEAFEVMRKHRIDLNII 710 (1265)
T ss_pred ccchhhhhhhhcceEEEeccch-hhHhHhhcCCCceeechhh-hHH-----HHHHHHHHHHHHHHHHHHHHHhccCccch
Confidence 3344666666666666666677 7889999999999999998 343 556666777788888887766 33322
Q ss_pred hhhcccccccCCCccccccCCCccccCCC--CCCcHHHHHHHHHHHHhhcCCC---CCCcchhhhhHhHhcCCccHHHHH
Q 001314 556 ETLYKKFQFLSLPCREEFKDLPAKDFKAS--ECNKVSSVLLAIRKALEEKVPE---SPSRELCILTTLARSDPPALEEAL 630 (1102)
Q Consensus 556 ~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~KVn~IC~air~~l~~~~~~---~~~~~l~IlTa~v~k~Pp~le~aL 630 (1102)
-.-+.+. + .++.... .-+-||-+|..| ..|++.+-+ +.+...+-.-+|-++.|-+
T Consensus 711 ~d~~~~~----------F----l~nv~afl~~in~~~~l~lfl-~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d----- 770 (1265)
T KOG1920|consen 711 FDYDPKR----------F----LKNVPAFLKQINRVNHLELFL-TELKEEDVTKTMYSSTSGSGKQVYMSRDPYD----- 770 (1265)
T ss_pred hhcCHHH----------H----HhhHHHHhccCCcHHHHHHHH-hhcccchhhhhhccccccccceeEEeccchh-----
Confidence 1111110 0 0000011 135677777643 444431111 1111111111233333322
Q ss_pred HHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHh-cc--CHHHHHHHHHHhcCCcchhhHHHHHHhc
Q 001314 631 ERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALG-LY--DLNLAAIVALNSQRDPKEFLPYLQELES 707 (1102)
Q Consensus 631 ~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg-~Y--Dl~Lal~VAq~sqkDPkEYLpfL~~L~~ 707 (1102)
.-+++|| ++-..||+ .+ -+.+.++.+- .-.+|++----|++++.
T Consensus 771 --------------------------~kv~~vc------~~vr~~l~~~~~~~~~~~ilTs~-vk~~~~~ie~aL~kI~~ 817 (1265)
T KOG1920|consen 771 --------------------------NKVNSVC------DAVRNALERRAPDKFNLFILTSY-VKSNPPEIEEALQKIKE 817 (1265)
T ss_pred --------------------------hHHHHHH------HHHHHHHhhcCcchhhHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2222222 01111111 00 1223333332 33677665444444443
Q ss_pred CChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-------------CCcHhHHHHHHHHH
Q 001314 708 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-------------TDPAKMEQVLEAWA 774 (1102)
Q Consensus 708 le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-------------~d~~~~~~i~~~yA 774 (1102)
+.. ... ----+.|++|+.-.-+ -+.+|+.||.+| .||+++-++.+.+-
T Consensus 818 l~~----~~~---~~~ad~al~hll~Lvd------------vn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 818 LQL----AQV---AVSADEALKHLLFLVD------------VNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HHh----ccc---chhHHHHHHHHHhhcc------------HHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHh
Confidence 322 110 0123456666665432 124555555555 39999988777665
Q ss_pred HHHhcccChHHHHHHHHHcCCHHHHHHHHHHcC--CHHHHHHHHhhcC----------CChHHHHHHHHHHHHHHHHcCC
Q 001314 775 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLLK----------LGKDEVAKLAQELCEELQALGK 842 (1102)
Q Consensus 775 d~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag--~W~~al~lA~~l~----------~~~~el~~l~~~lA~~L~~~g~ 842 (1102)
..=...++| .+-...|+|++|+.....+| .|.+++.+.++.+ .+++..+.++...|++|.+.++
T Consensus 879 ~m~~~~rkF----~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~ 954 (1265)
T KOG1920|consen 879 KMETLLRKF----KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELM 954 (1265)
T ss_pred hchhhhhhe----eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhcc
Confidence 322222333 34555566666666666666 4666666555543 3456677899999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 001314 843 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 881 (1102)
Q Consensus 843 ~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~ 881 (1102)
+.+||.+|.. +|..++|+.+|..+++|++|+.+|.+-.
T Consensus 955 ~~~Aal~Ye~-~GklekAl~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 955 SDEAALMYER-CGKLEKALKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred ccHHHHHHHH-hccHHHHHHHHHHhccHHHHHHHHHhhc
Confidence 9999999854 9999999999999999999999999654
No 8
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.50 E-value=1.1e-13 Score=160.88 Aligned_cols=161 Identities=18% Similarity=0.312 Sum_probs=145.3
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHH
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM 800 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl 800 (1102)
-|++|-..|-+..+ |++|++++++. .-|-+|++|. .-|+++-.+.+.||+||+..++++.|..+|..|++..||+
T Consensus 663 lydkagdlfeki~d--~dkale~fkkg-daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHD--FDKALECFKKG-DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred HHHhhhhHHHHhhC--HHHHHHHHHcc-cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 39999999999987 99999999998 9999999998 7899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 001314 801 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 880 (1102)
Q Consensus 801 ~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h 880 (1102)
++.+.+..|..|+.+...+. +..-....+-++|++....|+|+-|+++|.+ ++-+..||.||-+++.|++|++|+...
T Consensus 740 eaai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e-~~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTE-ADLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHh-cchhHHHHHHHhccccHHHHHHHHHHh
Confidence 99999999999999987663 2222235688899999999999999999987 999999999999999999999999997
Q ss_pred CChhhHHH
Q 001314 881 RREDLITK 888 (1102)
Q Consensus 881 ~~~dL~et 888 (1102)
.+++-.-.
T Consensus 818 ~~~e~t~~ 825 (1636)
T KOG3616|consen 818 HGPEATIS 825 (1636)
T ss_pred cCchhHHH
Confidence 76654433
No 9
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.78 E-value=6.6e-10 Score=126.83 Aligned_cols=200 Identities=18% Similarity=0.273 Sum_probs=157.2
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
+.|+|.|.-+|.++ ....|..|+|.|...-|.+.|+ .+.+|.|+.++|+|||.. .+.+.+.||+.+.-
T Consensus 40 ~~w~~e~~nlavac------a~tiv~~YD~agq~~le~n~tg----~aldm~wDkegdvlavlA--ek~~piylwd~n~e 107 (615)
T KOG2247|consen 40 HRWRPEGHNLAVAC------ANTIVIYYDKAGQVILELNPTG----KALDMAWDKEGDVLAVLA--EKTGPIYLWDVNSE 107 (615)
T ss_pred eeEecCCCceehhh------hhhHHHhhhhhcceecccCCch----hHhhhhhccccchhhhhh--hcCCCeeechhhhh
Confidence 57999544366666 3578999999999999999997 789999999999999998 56789999999876
Q ss_pred eEEEEEEEEeccCCCce-EEecCCCCceEEEEeeCCcEEEEEEE-------------------Eeee-----ecCCcEEE
Q 001314 85 HWYLKYEIRYLRRDGIR-FMWHPTKPLQLICWTLDGQITTYNFI-------------------WTTA-----VMENSTAL 139 (1102)
Q Consensus 85 HWYLKqei~~~~~~~~~-~~W~~e~pl~L~i~t~~g~~~~~~~~-------------------w~~~-----~~d~~~va 139 (1102)
. .|++.++..+.-+ ..|++..|- +.+++..|++.+|++. |... .+++.+.+
T Consensus 108 y---tqqLE~gg~~s~sll~wsKg~~e-l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 108 Y---TQQLESGGTSSKSLLAWSKGTPE-LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred h---HHHHhccCcchHHHHhhccCCcc-ccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 6 6999998877644 699998887 8888889999999876 2111 22344444
Q ss_pred E--EeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeee
Q 001314 140 V--IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEA 217 (1102)
Q Consensus 140 V--IDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~ 217 (1102)
| -.|.++.+|--+.- |.-|+++-++++..- +.....+.|+..+..+.+.++.++|++..++ |
T Consensus 184 v~~qegeta~ltevgge--pdnm~~~y~k~n~w~-------kage~m~sVvsgKkhl~yak~nE~D~pval~---f---- 247 (615)
T KOG2247|consen 184 VTTQEGETASLTEVGGE--PDNMDFFYGKVNGWG-------KAGETMVSVVSGKKHLMYAKYNELDEPVALQ---F---- 247 (615)
T ss_pred HhhhccceeeeeeccCc--cchhhhheeeeeccc-------cccceeeeeeecHHHHHHHhhcCCCCccceE---e----
Confidence 4 56999999987774 999999999887653 1222456888888888888888888776553 4
Q ss_pred eccccccCceEEEEEecCceEE
Q 001314 218 CISETAFGSVIHLIWLGSHLLL 239 (1102)
Q Consensus 218 ~~~~~~~~~~~~~~w~~~~~ll 239 (1102)
+..+|.++.+.|+.||+|+
T Consensus 248 ---q~~~gni~cyrwylDg~i~ 266 (615)
T KOG2247|consen 248 ---QEKYGNIHCYRWYLDGYIL 266 (615)
T ss_pred ---eecCCceeEEEEecccccc
Confidence 5788999999999998765
No 10
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.1e-06 Score=101.70 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHc-------------CCHHHHHHHHHHcCCHHHHHHHHhhc---------------
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCC-------------SSLEKAMKAYRASGNWSGVLTVAGLL--------------- 819 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~a-------------g~~ekAl~~y~~ag~W~~al~lA~~l--------------- 819 (1102)
.++.-||+||++.|+.+.|.-+|.+| |+.+||.......|+--.+.-+|+.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777888888888888888888777 34455555555555444444444443
Q ss_pred --------------CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhh
Q 001314 820 --------------KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 885 (1102)
Q Consensus 820 --------------~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL 885 (1102)
++. +++-.++ -+....+..+||+-|.+..|..+.||.+|-+++++..|+.||.....+..
T Consensus 993 AqafsnAIRlcKEnd~~-d~L~nla-----l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 993 AQAFSNAIRLCKENDMK-DRLANLA-----LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred HHHHHHHHHHHHhcCHH-HHHHHHH-----hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 221 1111111 12233456789998877444999999999999999999999998877655
Q ss_pred HHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 886 ITKV--------KHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 923 (1102)
Q Consensus 886 ~etv--------~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~ 923 (1102)
++-| -|.++..+.....+ .+|++|-+.=|..-|+
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~----~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFEN----NQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHHHH
Confidence 4433 34466655554444 4566766666666664
No 11
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=2.2e-06 Score=102.53 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=168.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHhccCHHH--HHHHHH-HhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHH
Q 001314 656 EEALKHLLWLADSEAVYEAALGLYDLNL--AAIVAL-NSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 732 (1102)
Q Consensus 656 e~alk~l~fLvDvn~Ly~~ALg~YDl~L--al~VAq-~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~ 732 (1102)
-+||+|..-+-|.-..|+.|||.+.-.+ ...|.. -.|.|- -||+-.|.+.+...|++.|..|.|...+++.|..
T Consensus 864 ~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdl---y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~ 940 (1243)
T COG5290 864 LEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRHDL---YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHIS 940 (1243)
T ss_pred hHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccc---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHH
Confidence 4679999988899999999999998665 333333 345666 4788889999999999999999999988888877
Q ss_pred HcCC----CcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHc
Q 001314 733 SMGD----SYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 806 (1102)
Q Consensus 733 ~~g~----~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~a 806 (1102)
++-. ...-||+..+... .+|.+++.+. ..+.+ .+..|+-|.+. +...+.++|+-+++...|..+
T Consensus 941 aa~aye~~gK~~Ea~gay~sA-~mwrec~si~~q~~~~e----~~~~AE~L~S~-----l~ve~R~~~da~~i~l~yl~N 1010 (1243)
T COG5290 941 AAKAYEVEGKYIEAHGAYDSA-LMWRECGSISTQEKGYE----FNLCAELLPSD-----LLVEFRKAGDAEKILLTYLEN 1010 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhcchH----HHHHHHhhhhh-----HHHHHHHhcCHHHHHHHHHhC
Confidence 6532 1156777777776 7888887776 23333 44566666542 444555566666666666666
Q ss_pred CCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhH
Q 001314 807 GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 886 (1102)
Q Consensus 807 g~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~ 886 (1102)
-.|..|+.+-. ...+ .+.+..++..+.+.-++-+|..+-..|.+.++.|.++|.+.+.-.+++|.+...+..+
T Consensus 1011 ~~eava~~ckg-s~y~----ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~e~-- 1083 (1243)
T COG5290 1011 LYEAVAMDCKG-SEYR----EAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKCEM-- 1083 (1243)
T ss_pred HHHHHHHHccc-ccch----HHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcC--
Confidence 66666655421 1111 2345555666666667778888888999999999999999999999999887654322
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 887 TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 923 (1102)
Q Consensus 887 etv~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~ 923 (1102)
|-+-.....-...+.|.+..+.+|..|+..+-+
T Consensus 1084 ----p~a~~~~~~e~~t~dDvs~a~~~~st~~s~~t~ 1116 (1243)
T COG5290 1084 ----PEAREILREELLTLDDVSEAFVKYSTRLSALTE 1116 (1243)
T ss_pred ----hHHHHhhhhhhcCccchhhhhhhhhhHHHHHHH
Confidence 112222222222357888888888888777654
No 12
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.50 E-value=3.5e-05 Score=99.61 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=101.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
.+|||..|.+.|++.--+..+.+..+..|+|+|.-+.--. | -+..-..|+|-|.|.++|..-+......|-+|-+|-
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE-~--v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSE-P--VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccc-c--CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 5899999999999976332223678999999998766432 2 122345689999999999998766667899999877
Q ss_pred ceEEEEEEEEecc--CCC--ceEEecCCCCceEEEEeeCC-c-EEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCC
Q 001314 84 NHWYLKYEIRYLR--RDG--IRFMWHPTKPLQLICWTLDG-Q-ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 157 (1102)
Q Consensus 84 YHWYLKqei~~~~--~~~--~~~~W~~e~pl~L~i~t~~g-~-~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VP 157 (1102)
-+ --|+..+. .+. ..+.|.+..-. |++++.+. + +..-||.|-.. ..
T Consensus 291 Lr---hgeF~l~~~~~~~~v~~l~Wn~ds~i-LAv~~~~~vqLWt~~NYHWYLK----------------qe-------- 342 (928)
T PF04762_consen 291 LR---HGEFTLRFDPEEEKVIELAWNSDSEI-LAVWLEDRVQLWTRSNYHWYLK----------------QE-------- 342 (928)
T ss_pred cE---eeeEecCCCCCCceeeEEEECCCCCE-EEEEecCCceEEEeeCCEEEEE----------------EE--------
Confidence 66 34444432 222 35899998877 78766443 1 22334556322 11
Q ss_pred CcccccccccC--CceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 158 PPMYLFSLKFP--TAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 158 PPM~~~~l~~~--~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
+.++ ..+..+.|.+.. ...+.+++.+|.+..+++
T Consensus 343 -------i~~~~~~~~~~~~Wdpe~-p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 343 -------IRFSSSESVNFVKWDPEK-PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred -------EEccCCCCCCceEECCCC-CCEEEEEecCCcEEEEEE
Confidence 1111 112236666653 256777777788887776
No 13
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.41 E-value=2.9e-06 Score=99.73 Aligned_cols=227 Identities=16% Similarity=0.161 Sum_probs=151.3
Q ss_pred hHhHhcCCccHHHHHHHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHH------HHHHhccC----HHHHH
Q 001314 616 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVY------EAALGLYD----LNLAA 685 (1102)
Q Consensus 616 Ta~v~k~Pp~le~aL~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly------~~ALg~YD----l~Lal 685 (1102)
-||+|-. ++ .=|.+|.+|+++.-.++ .| +...-.+-+.|-==+-.+-+|| +-||+||- |++|.
T Consensus 606 kAY~rVR--dl-~~L~li~EL~~~k~rge-~P---~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 606 KAYIRVR--DL-RYLELISELEERKKRGE-TP---NDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHh--cc-HHHHHHHHHHHHHhcCC-Cc---hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 4566654 22 24677888875421111 01 0111122222322233444554 45787773 44453
Q ss_pred HHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcH
Q 001314 686 IVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPA 764 (1102)
Q Consensus 686 ~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~ 764 (1102)
.+..- .+|+|= .+| .+.|++-.--.+....|.+.|+.+|+ .++|++.+.+| +--+.+.++. .=+.
T Consensus 679 E~~~~--g~~~eK-KmL--------~RKRA~WAr~~kePkaAAEmLiSaGe--~~KAi~i~~d~-gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 679 EFLGS--GDPKEK-KML--------IRKRADWARNIKEPKAAAEMLISAGE--HVKAIEICGDH-GWVDMLIDIARKLDK 744 (1081)
T ss_pred HHhhc--CChHHH-HHH--------HHHHHHHhhhcCCcHHHHHHhhcccc--hhhhhhhhhcc-cHHHHHHHHHhhcch
Confidence 33321 355441 111 13344444456788899999999998 89999999998 6555666665 2122
Q ss_pred hHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChH
Q 001314 765 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 844 (1102)
Q Consensus 765 ~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~ 844 (1102)
.-++-++..|.||.....+--|+++|.+.|+...-+++.+.+++|.+|+.+|.+++.- +.+++...|..|.+..+|.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHH
Confidence 2345567889999999999999999999999999999999999999999999998643 3467888999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 001314 845 EAAKIALDYCGDVTNGISLLIDA 867 (1102)
Q Consensus 845 eAa~i~l~ylgD~e~AI~~y~~~ 867 (1102)
||-+.|.+ +|.-.+|++++.+.
T Consensus 822 EAqkAfhk-AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 822 EAQKAFHK-AGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHHHH-hcchHHHHHHHHHh
Confidence 99988865 77777766665443
No 14
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.05 E-value=3.6e-05 Score=91.79 Aligned_cols=135 Identities=21% Similarity=0.258 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcchHHHHhccCCcHhH---------HHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 001314 740 ADCLNLMKKYAQLFPLGLKLITDPAKM---------EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWS 810 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~~d~~~~---------~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~ 810 (1102)
+..+.|..++ +..+.||++..||+.+ -++....|+.+.+..+|+.=+......|+++-|.+||.++++|.
T Consensus 299 ~~i~~fL~~~-G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~ 377 (443)
T PF04053_consen 299 QSIARFLEKK-GYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS 377 (443)
T ss_dssp HHHHHHHHHT-T-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHC-CCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence 4555555555 5555555555555433 13344555556666678888888888888888888888888888
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 001314 811 GVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 881 (1102)
Q Consensus 811 ~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~ 881 (1102)
.++-+....+ +. +-..+|++.-...|++.-|-..++ ++||+++.++++++.+++.+|.-.|..|.
T Consensus 378 ~L~lLy~~~g-~~----~~L~kl~~~a~~~~~~n~af~~~~-~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 378 GLLLLYSSTG-DR----EKLSKLAKIAEERGDINIAFQAAL-LLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HHHHHHHHCT--H----HHHHHHHHHHHHTT-HHHHHHHHH-HHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred ccHHHHHHhC-CH----HHHHHHHHHHHHccCHHHHHHHHH-HcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 8877766554 22 346666777778999999999986 49999999999999999999998888774
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.01 E-value=0.012 Score=69.06 Aligned_cols=182 Identities=20% Similarity=0.306 Sum_probs=121.9
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCCc---ceeeeecCCccccceeeeeecCCCCeEEEEEeeC-CCCeEEEEEc
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL---ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFF 81 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNGL---rhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~-~~~~vqLWt~ 81 (1102)
...|+|-+||+- +....|.+|.=-+- ...||..= ..+|.+|+|+.||.-+|++-+.. .-..+.+|++
T Consensus 66 kySPsG~yiASG------D~sG~vRIWdtt~~~hiLKnef~v~---aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 66 KYSPSGFYIASG------DVSGKVRIWDTTQKEHILKNEFQVL---AGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred EeCCCceEEeec------CCcCcEEEEeccCcceeeeeeeeec---ccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 467999999993 24568999987663 22344321 23799999999999999987542 2347999999
Q ss_pred ccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcc
Q 001314 82 SNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 160 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM 160 (1102)
+|-- =||. +.+.. .++.+-|..|+|++-+ +|+++|++-+|- ||+-. |
T Consensus 137 G~Sv----Gei~-GhSr~ins~~~KpsRPfRi~T~-----------------sdDn~v~ffeGP-----PFKFk-----~ 184 (603)
T KOG0318|consen 137 GNSV----GEIT-GHSRRINSVDFKPSRPFRIATG-----------------SDDNTVAFFEGP-----PFKFK-----S 184 (603)
T ss_pred CCcc----ceee-ccceeEeeeeccCCCceEEEec-----------------cCCCeEEEeeCC-----Ceeee-----e
Confidence 9964 2331 11122 4688999999987763 588899998883 33221 1
Q ss_pred cccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCc-eEE
Q 001314 161 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLL 239 (1102)
Q Consensus 161 ~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~ll 239 (1102)
+++ .-..-|+||-|+|+++ -|+.+-+||++++|+=.+.+...++++ ....-|++--+.|..|. .++
T Consensus 185 s~r--~HskFV~~VRysPDG~--~Fat~gsDgki~iyDGktge~vg~l~~---------~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 185 SFR--EHSKFVNCVRYSPDGS--RFATAGSDGKIYIYDGKTGEKVGELED---------SDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred ccc--ccccceeeEEECCCCC--eEEEecCCccEEEEcCCCccEEEEecC---------CCCccccEEEEEECCCCceEE
Confidence 111 1122499999999865 578889999999998655555544442 12445788889998555 444
Q ss_pred EE
Q 001314 240 SV 241 (1102)
Q Consensus 240 ~~ 241 (1102)
-+
T Consensus 252 T~ 253 (603)
T KOG0318|consen 252 TV 253 (603)
T ss_pred Ee
Confidence 33
No 16
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=5.3e-05 Score=91.48 Aligned_cols=145 Identities=18% Similarity=0.194 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHH
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA 799 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekA 799 (1102)
.+++|.-+|+++|. +-+|+++.=.- .+| .||+|+ -|+..=..+.+..||++.+.++|+.|..+...+..++.|
T Consensus 1037 ~~~~AVmLYHkAGm--~~kALelAF~t-qQf-~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGM--IGKALELAFRT-QQF-SALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred hhhHHHHHHHhhcc--hHHHHHHHHhh-ccc-HHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777766 66777766554 443 566666 244444678888999999999999999999999999999
Q ss_pred HHHHHHcCC-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHH
Q 001314 800 MKAYRASGN-----WSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEE 872 (1102)
Q Consensus 800 l~~y~~ag~-----W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~e 872 (1102)
+.....-+- ..+.+..++.-....++.+.+++.+|+-+.++|.|..|.+=|-+ +||-=.|++.+.|.++-+.
T Consensus 1113 lqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ-AGdKl~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1113 LQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ-AGDKLSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh-hhhHHHHHHHHHhcCCcce
Confidence 988766552 33333333321123456778999999999999999999999866 9999999999999887554
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00015 Score=85.67 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=117.4
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHH---------HHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME---------QVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~---------~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.|+.|-..|-..-.++...+..+..+. +.+++||++..||+.+- ++....|.-..+..+|++=+.+..++
T Consensus 601 d~~~a~~vLp~I~k~~rt~va~Fle~~-g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 601 DLEVADGVLPTIPKEIRTKVAHFLESQ-GMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSA 679 (794)
T ss_pred cccccccccccCchhhhhhHHhHhhhc-cchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhc
Confidence 355555544444334445666666666 77777777775555432 34445566777788999999999999
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 001314 794 SSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 873 (1102)
Q Consensus 794 g~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA 873 (1102)
|++..|-+|+.++.+|..++-+....+. .+....+|..-+++|+..-|--.|+. .|+++++++++++.+.+-||
T Consensus 680 ~~l~lA~EC~~~a~d~~~LlLl~t~~g~-----~~~l~~la~~~~~~g~~N~AF~~~~l-~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 680 GELPLASECFLRARDLGSLLLLYTSSGN-----AEGLAVLASLAKKQGKNNLAFLAYFL-SGDYEECLELLISTQRLPEA 753 (794)
T ss_pred ccchhHHHHHHhhcchhhhhhhhhhcCC-----hhHHHHHHHHHHhhcccchHHHHHHH-cCCHHHHHHHHHhcCcCcHH
Confidence 9999999999999999999887766542 24677778888889999999988876 99999999999999999999
Q ss_pred HHHHHhcCC
Q 001314 874 LRVAFMHRR 882 (1102)
Q Consensus 874 ~rLa~~h~~ 882 (1102)
--+|..|-+
T Consensus 754 al~ArtYlp 762 (794)
T KOG0276|consen 754 ALFARTYLP 762 (794)
T ss_pred HHHHhhhCh
Confidence 988888843
No 18
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.0004 Score=82.91 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=95.0
Q ss_pred hhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHH
Q 001314 720 RLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK 798 (1102)
Q Consensus 720 ~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ek 798 (1102)
-+..|++|.+.|..+|+ .+--++.+... .+|..--.+. .=|+. .+++...|+-+.+.|.-++|...|.+.+..++
T Consensus 808 ~~~~We~A~~yY~~~~~--~e~~~ecly~l-e~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka 883 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGD--TENQIECLYRL-ELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPKA 883 (1189)
T ss_pred HHHHHHHHHHHHHhccc--hHhHHHHHHHH-HhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcHH
Confidence 35678999999999987 56666666666 6776655454 21211 24566789999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 799 AMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 799 Al~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
|+....+..+|-+|..+|++..++ ++..|..+.|.+|-+.+++.||.+.+
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~--qv~tliak~aaqll~~~~~~eaIe~~ 933 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLP--QVQTLIAKQAAQLLADANHMEAIEKD 933 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHHHHHHhhcchHHHHHHh
Confidence 999999999999999999998766 56667766666666555555555544
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.0027 Score=69.21 Aligned_cols=105 Identities=23% Similarity=0.469 Sum_probs=72.7
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC---ccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~---~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
.++|+|.|+++|+.. + +..|++|+++ -|||.--. ..+-.|+..+||++|..||...+ .-+|=+|-
T Consensus 66 svAwsp~g~~La~aS-F-----D~t~~Iw~k~---~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR---DKSVWiWe 133 (312)
T KOG0645|consen 66 SVAWSPHGRYLASAS-F-----DATVVIWKKE---DGEFECVATLEGHENEVKCVAWSASGNYLATCSR---DKSVWIWE 133 (312)
T ss_pred eeeecCCCcEEEEee-c-----cceEEEeecC---CCceeEEeeeeccccceeEEEEcCCCCEEEEeeC---CCeEEEEE
Confidence 579999999999986 2 5799999999 57776542 23456999999999999999764 23688885
Q ss_pred cccceEEEEEEEEeccC--C--C-c-eEEecCCCCceEEEEeeCCcEEEEEE
Q 001314 81 FSNNHWYLKYEIRYLRR--D--G-I-RFMWHPTKPLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~--~--~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~ 126 (1102)
.--= -|+.+..- + + + .+.|||+..+ |+-..-++.+-.|..
T Consensus 134 ~ded-----dEfec~aVL~~HtqDVK~V~WHPt~dl-L~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 134 IDED-----DEFECIAVLQEHTQDVKHVIWHPTEDL-LFSCSYDNTIKVYRD 179 (312)
T ss_pred ecCC-----CcEEEEeeeccccccccEEEEcCCcce-eEEeccCCeEEEEee
Confidence 5411 23333221 1 1 3 3899999988 655455666665543
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.77 E-value=0.0064 Score=64.94 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=119.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+++|.|.|++|++.. .+..|.+|+-++.+. ...+.. ....+..+.|+++++.|++.. ....|++|...+
T Consensus 14 ~~~~~~~~~~l~~~~------~~g~i~i~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~~~~~ 82 (289)
T cd00200 14 CVAFSPDGKLLATGS------GDGTIKVWDLETGEL-LRTLKG-HTGPVRDVAASADGTYLASGS---SDKTIRLWDLET 82 (289)
T ss_pred EEEEcCCCCEEEEee------cCcEEEEEEeeCCCc-EEEEec-CCcceeEEEECCCCCEEEEEc---CCCeEEEEEcCc
Confidence 689999999999876 245888888765431 112222 123577999999998888764 256899999987
Q ss_pred ceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEE-Ee----e----------eec-CCcEEEEEe-CCe
Q 001314 84 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI-WT----T----------AVM-ENSTALVID-GSK 145 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~-w~----~----------~~~-d~~~vaVID-G~~ 145 (1102)
... ..++.. .... .++.|++...+ ++.+..+|.+.+++.. .. . ..+ +...+++-+ ...
T Consensus 83 ~~~--~~~~~~-~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 83 GEC--VRTLTG-HTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred ccc--eEEEec-cCCcEEEEEEcCCCCE-EEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 531 222221 1223 46899998443 4443447888877753 10 0 011 223444433 444
Q ss_pred EEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccC
Q 001314 146 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 225 (1102)
Q Consensus 146 l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 225 (1102)
+.+-.++. +.+..... ....+|.+++|++++. .+++...++.+.+|+.........+ ....+
T Consensus 159 i~i~d~~~---~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~------------~~~~~ 220 (289)
T cd00200 159 IKLWDLRT---GKCVATLT-GHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTL------------RGHEN 220 (289)
T ss_pred EEEEEccc---cccceeEe-cCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecch------------hhcCC
Confidence 55555542 22222222 2234788999988653 5666666899999997542211111 01123
Q ss_pred ceEEEEEecCceEEEE
Q 001314 226 SVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 226 ~~~~~~w~~~~~ll~~ 241 (1102)
.+..+.|..++.+++.
T Consensus 221 ~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 221 GVNSVAFSPDGYLLAS 236 (289)
T ss_pred ceEEEEEcCCCcEEEE
Confidence 5667778776666554
No 21
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.74 E-value=0.00045 Score=73.76 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=69.5
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+.++|.|.|+.+|.+.- .....|.||+-+|-.-.+|.- ..+..+.||++|..|++.--......|++|++.
T Consensus 63 ~~~~WsP~g~~favi~g----~~~~~v~lyd~~~~~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 63 HDVAWSPNGNEFAVIYG----SMPAKVTLYDVKGKKIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEEECcCCCEEEEEEc----cCCcccEEEcCcccEeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 46899999999887752 123489999998766655531 257789999999999997532233569999999
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEee
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 117 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~ 117 (1102)
++.-.-+. .......+.|+|...+ |+..++
T Consensus 134 ~~~~i~~~----~~~~~t~~~WsPdGr~-~~ta~t 163 (194)
T PF08662_consen 134 KKKKISTF----EHSDATDVEWSPDGRY-LATATT 163 (194)
T ss_pred CCEEeecc----ccCcEEEEEEcCCCCE-EEEEEe
Confidence 77632221 1122256899998877 444343
No 22
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.56 E-value=0.01 Score=75.57 Aligned_cols=162 Identities=10% Similarity=-0.029 Sum_probs=123.7
Q ss_pred hchhHHHh--hhcHHHHHHHHHHcCC---CcHHHHHHHHHHHhcchHHHHhccC-------CcHhHHHHHHHHHHHHhcc
Q 001314 713 MRYTIDLR--LQRFENALKHIVSMGD---SYHADCLNLMKKYAQLFPLGLKLIT-------DPAKMEQVLEAWADHLSDV 780 (1102)
Q Consensus 713 rr~~Id~~--LkryekAl~hl~~~g~---~~~deAie~~~~~~~Ly~~AL~L~~-------d~~~~~~i~~~yAd~L~~~ 780 (1102)
....|++| .|++++|.+.|.++.. .-+.-.+..+.++ +.+++|++++. .|.. ..+.....-+...
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~--~T~~~ll~a~~~~ 439 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNH--VTFLAVLSACRYS 439 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhcC
Confidence 34567776 5789999999998743 1257788888898 99999999981 2222 2244444556678
Q ss_pred cChHHHHHHHHHcC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 781 KCFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 781 ~~~eeAa~~Y~~ag----------~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
|..++|..+|.... .|.--+++|.++|++++|..+....+..++. .....+...+...|+++.|..++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999998763 2566789999999999999999887665433 35778888888999999988887
Q ss_pred HHh-------cCCHHHHHHHHHHhcCHHHHHHHHHh
Q 001314 851 LDY-------CGDVTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 851 l~y-------lgD~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
.+- .+.+...+.+|++.++|++|.++...
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 542 24567789999999999999987654
No 23
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0019 Score=79.33 Aligned_cols=175 Identities=16% Similarity=0.218 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcC---CHHHHHHHHHHcCCHHH
Q 001314 739 HADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSG 811 (1102)
Q Consensus 739 ~deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag---~~ekAl~~y~~ag~W~~ 811 (1102)
.+.-++++.+- .+|+.|+.|+ .|++..+.++++||+||..+|+|++|-..|+++= +...-+.-|..+..-++
T Consensus 337 le~kL~iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 337 LETKLDILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHH
Confidence 45567777776 8999999998 4778889999999999999999999999999883 22333333433333333
Q ss_pred HHHHHhh---cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHHHHHHHHHHhcCHHHHHHHHHhcCC
Q 001314 812 VLTVAGL---LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVTNGISLLIDARDWEEALRVAFMHRR 882 (1102)
Q Consensus 812 al~lA~~---l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylg------D~e~AI~~y~~~~~W~eA~rLa~~h~~ 882 (1102)
+-..... -++...+...++..+=-.| |+-+.--+ |...+. |++.|++.+-+.+-.++|.+||.+++.
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKl---kd~~kL~e-fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKL---KDVEKLTE-FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHh---cchHHHHH-HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 3222111 1233333333444333333 33322222 344444 799999999999999999999999987
Q ss_pred hhh-HHHHHHhH--HHHHHHHHHH--HHHHHHHHHHHHHHH
Q 001314 883 EDL-ITKVKHAS--LECASSLIGE--YKEGLEKVGKYLTRY 918 (1102)
Q Consensus 883 ~dL-~etv~~a~--l~~a~~~~~e--l~e~~~~~~k~~~RL 918 (1102)
.+. ++-+.... .++|-..+.. +.+....+.+|=.=|
T Consensus 492 he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L 532 (933)
T KOG2114|consen 492 HEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKIL 532 (933)
T ss_pred CHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 433 33222221 2455555554 355555566664433
No 24
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.54 E-value=0.0057 Score=65.32 Aligned_cols=102 Identities=13% Similarity=0.264 Sum_probs=63.5
Q ss_pred ceeeccCCCeEEEEeecc-CC-C----CCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEE
Q 001314 4 VLEWMPSGANIAAVYDRK-SE-N----KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~-~~-~----~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vq 77 (1102)
.|.|+|+|+.++...... +. + ....+-+..-++-.-....+. .+..|.+++|+++|+-+||+.- .....|+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~--~~~~I~~~~WsP~g~~favi~g-~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK--KEGPIHDVAWSPNGNEFAVIYG-SMPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc--CCCceEEEEECcCCCEEEEEEc-cCCcccE
Confidence 589999998666554321 10 0 023444443333333444443 2335999999999999999862 2233899
Q ss_pred EEEcccceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 78 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
||... .+....++.....++.|+|-..+ |++
T Consensus 87 lyd~~-----~~~i~~~~~~~~n~i~wsP~G~~-l~~ 117 (194)
T PF08662_consen 87 LYDVK-----GKKIFSFGTQPRNTISWSPDGRF-LVL 117 (194)
T ss_pred EEcCc-----ccEeEeecCCCceEEEECCCCCE-EEE
Confidence 99996 35555565433356999998877 554
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.54 E-value=0.0039 Score=70.31 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+++-.|+-||.|+-. ..|++|-=+-+-----+.|++.++ .|..+.||.||++||-- +-...|++|.++.
T Consensus 69 avsl~P~~~l~aTGG-------gDD~AflW~~~~ge~~~eltgHKD-SVt~~~FshdgtlLATG---dmsG~v~v~~~st 137 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGG-------GDDLAFLWDISTGEFAGELTGHKD-SVTCCSFSHDGTLLATG---DMSGKVLVFKVST 137 (399)
T ss_pred EEEeCCCCceEEecC-------CCceEEEEEccCCcceeEecCCCC-ceEEEEEccCceEEEec---CCCccEEEEEccc
Confidence 356678777766632 347777666554445566676555 59999999999999964 4456899999988
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 124 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~ 124 (1102)
-| .+-++.....+-.-++||| ++..|..|+.+|.+-.+
T Consensus 138 g~--~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 138 GG--EQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMW 175 (399)
T ss_pred Cc--eEEEeecccCceEEEEecc-cccEEEeecCCCcEEEE
Confidence 76 2222222223324589999 45559999999988543
No 26
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.21 Score=60.12 Aligned_cols=245 Identities=20% Similarity=0.181 Sum_probs=136.8
Q ss_pred eecCceeEEEecCCccccceEEEEEecCCeEEEEEcCcccccccccccccccccCCCcccccccccccccCCCEEEEEec
Q 001314 383 VCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLH 462 (1102)
Q Consensus 383 la~n~tSF~v~~~~~~~~~~~Ll~TT~~h~l~fv~L~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~VERGs~lV~~vp 462 (1102)
+...|.|....++ -+||||..| ++++.-.+ -..++.+++---|+++.|
T Consensus 195 ~~~~IkSg~W~~d-------~fiYtT~~~-lkYl~~Ge------------------------~~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 195 ISERIKSGCWVED-------CFIYTTSNH-LKYLVNGE------------------------TGIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp E-S--SEEEEETT-------EEEEE-TTE-EEEEETTE------------------------EEEEEE-SS--EEEEEET
T ss_pred ecceeEEEEEEcC-------EEEEEcCCe-EEEEEcCC------------------------cceEEEcCCceEEEEEEc
Confidence 4568889998888 999999995 44422111 233567888889999998
Q ss_pred CCCcEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCcchH
Q 001314 463 GDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYI 542 (1102)
Q Consensus 463 ~~~~~vVLQmPRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~~~l 542 (1102)
.. -+|.+==.-||+..+.=-.-++ .-+.++-+++|.++..+.+..++-=+
T Consensus 243 ~~-~~ly~~Dr~~~v~~~~ld~~~~-~fk~av~~~d~~~v~~~i~~~~ll~~---------------------------- 292 (443)
T PF04053_consen 243 KE-NRLYLIDRDGNVISYELDLSEL-EFKTAVLRGDFEEVLRMIAASNLLPN---------------------------- 292 (443)
T ss_dssp TT-TEEEEE-TT--EEEEE--HHHH-HHHHHHHTT-HHH-----HHHHTGGG----------------------------
T ss_pred cC-CEEEEEECCCCEEEEEECHHHH-HHHHHHHcCChhhhhhhhhhhhhccc----------------------------
Confidence 55 5666666778888874333333 35567778888887766632222100
Q ss_pred HHHHhhccCCchhhhhcccccccCCCccccccCCCccccCCCCCCcHHHHHHHHHHHHhhcCCCCCCcchhhhhHhHhcC
Q 001314 543 TEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSD 622 (1102)
Q Consensus 543 nLFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~IC~air~~l~~~~~~~~~~~l~IlTa~v~k~ 622 (1102)
+ | ++ -=+++...|+++.
T Consensus 293 ----------------------i--~-----------------~~----~~~~i~~fL~~~G------------------ 309 (443)
T PF04053_consen 293 ----------------------I--P-----------------KD----QGQSIARFLEKKG------------------ 309 (443)
T ss_dssp -------------------------------------------HH----HHHHHHHHHHHTT------------------
T ss_pred ----------------------C--C-----------------hh----HHHHHHHHHHHCC------------------
Confidence 0 0 00 1122333344321
Q ss_pred CccHHHHHHHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHH
Q 001314 623 PPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYL 702 (1102)
Q Consensus 623 Pp~le~aL~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL 702 (1102)
-.|.||+.+ .|.+.=|+-||..=||+.|+.+|++.. +|.
T Consensus 310 --~~e~AL~~~--------------------------------~D~~~rFeLAl~lg~L~~A~~~a~~~~-~~~------ 348 (443)
T PF04053_consen 310 --YPELALQFV--------------------------------TDPDHRFELALQLGNLDIALEIAKELD-DPE------ 348 (443)
T ss_dssp ---HHHHHHHS--------------------------------S-HHHHHHHHHHCT-HHHHHHHCCCCS-THH------
T ss_pred --CHHHHHhhc--------------------------------CChHHHhHHHHhcCCHHHHHHHHHhcC-cHH------
Confidence 134454443 455555999999999999988877542 342
Q ss_pred HHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhc
Q 001314 703 QELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD 779 (1102)
Q Consensus 703 ~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~ 779 (1102)
.-.|-+++..-.|+++-|..-|.+++ .|..-+=|| ++.+.++. .|+-...
T Consensus 349 -------~W~~Lg~~AL~~g~~~lAe~c~~k~~----------------d~~~L~lLy~~~g~~~~L~k----l~~~a~~ 401 (443)
T PF04053_consen 349 -------KWKQLGDEALRQGNIELAEECYQKAK----------------DFSGLLLLYSSTGDREKLSK----LAKIAEE 401 (443)
T ss_dssp -------HHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHH----HHHHHHH
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHhhc----------------CccccHHHHHHhCCHHHHHH----HHHHHHH
Confidence 11222445444555555555555554 444444444 44444444 5666778
Q ss_pred ccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcC
Q 001314 780 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK 820 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~ 820 (1102)
++++.-|...+...|+.++.++....+|++.+|.-.|+.++
T Consensus 402 ~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 402 RGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp TT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 89999999999999999999999999999999988887653
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.50 E-value=0.1 Score=69.06 Aligned_cols=153 Identities=12% Similarity=0.065 Sum_probs=81.6
Q ss_pred hhcHHHHHHHHHHcCC-------CcHHHHHHHHHHHhcchHHHHhccC-------CcHhHHHHHHHHHHHHhcccChHHH
Q 001314 721 LQRFENALKHIVSMGD-------SYHADCLNLMKKYAQLFPLGLKLIT-------DPAKMEQVLEAWADHLSDVKCFEDA 786 (1102)
Q Consensus 721 LkryekAl~hl~~~g~-------~~~deAie~~~~~~~Ly~~AL~L~~-------d~~~~~~i~~~yAd~L~~~~~~eeA 786 (1102)
.|++++|.+.|.++.. ..+...+..+.+. +.+++|+++|. .|+. ..+....+.+...+++++|
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD~--~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPDE--VFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHH
Confidence 4556666666655421 1134455555665 66666666661 1221 2333444455556666666
Q ss_pred HHHHHHcCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 787 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 787 a~~Y~~ag~---------~ekAl~~y~~ag~W~~al~lA~~l---~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
..+|....+ |.-.+.+|.++|+|++|..+-..+ +..++ ...+..+...+.+.|++++|.+++.+..
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655421 344556666666666665554433 12221 1345566666666666666666665432
Q ss_pred CC--------HHHHHHHHHHhcCHHHHHHHHH
Q 001314 855 GD--------VTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 855 gD--------~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
.. +...+..|++.+++++|..+-.
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11 3445566666666666665443
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.49 E-value=0.043 Score=58.51 Aligned_cols=203 Identities=18% Similarity=0.151 Sum_probs=116.1
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCc-ceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGL-rhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
.+.|.|.|++|++.. .+..|.+|+-++. ....|.. ....|..+.|++++.+++... ....|.+|...
T Consensus 56 ~~~~~~~~~~l~~~~------~~~~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 123 (289)
T cd00200 56 DVAASADGTYLASGS------SDKTIRLWDLETGECVRTLTG---HTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVE 123 (289)
T ss_pred EEEECCCCCEEEEEc------CCCeEEEEEcCcccceEEEec---cCCcEEEEEEcCCCCEEEEec---CCCeEEEEECC
Confidence 578999998888876 2457888887753 2233321 223689999999988888753 24679999998
Q ss_pred cceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEE-E------e--------eeecCCc-EEEEEe-CC
Q 001314 83 NNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI-W------T--------TAVMENS-TALVID-GS 144 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~-w------~--------~~~~d~~-~vaVID-G~ 144 (1102)
+..- .+.+. ..... .++.|+|...+ ++.++.+|.+.+++.. . . ...+.++ .+++.. ..
T Consensus 124 ~~~~--~~~~~-~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 124 TGKC--LTTLR-GHTDWVNSVAFSPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred CcEE--EEEec-cCCCcEEEEEEcCcCCE-EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCC
Confidence 6542 22232 12223 45899998544 5554447888887764 1 0 0011222 333222 33
Q ss_pred eEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEe-CCceEEEecCCCCccccccCCceeeeeeccccc
Q 001314 145 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPAPDMLEDLEGTEFVVEACISETA 223 (1102)
Q Consensus 145 ~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~-~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 223 (1102)
.+.+-.++. ..++.... ..+.++..++|+++ . .+.+..+ ++.+.+|+.........+ +..
T Consensus 200 ~i~i~d~~~---~~~~~~~~-~~~~~i~~~~~~~~--~-~~~~~~~~~~~i~i~~~~~~~~~~~~------------~~~ 260 (289)
T cd00200 200 TIKLWDLST---GKCLGTLR-GHENGVNSVAFSPD--G-YLLASGSEDGTIRVWDLRTGECVQTL------------SGH 260 (289)
T ss_pred cEEEEECCC---Cceecchh-hcCCceEEEEEcCC--C-cEEEEEcCCCcEEEEEcCCceeEEEc------------ccc
Confidence 355544443 12222211 33457889999886 2 2344444 899999997542211101 112
Q ss_pred cCceEEEEEecCceEEEE
Q 001314 224 FGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 224 ~~~~~~~~w~~~~~ll~~ 241 (1102)
...+..+.|..++..+++
T Consensus 261 ~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 261 TNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCcEEEEEECCCCCEEEE
Confidence 235677788776554443
No 29
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.039 Score=66.68 Aligned_cols=133 Identities=19% Similarity=0.292 Sum_probs=92.5
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEE--
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFI-- 127 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~-- 127 (1102)
.|..|+.|.+|..|||- ...+.|.+|...| -||++-+|+-+....+ +++|.+. .||+-..-+|.+..+|..
T Consensus 27 ~I~slA~s~kS~~lAvs---Rt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVS---RTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ceEEEEEeccCCceeee---ccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccC
Confidence 59999999999999996 3467899999999 9999999987554444 5899943 556655567888777754
Q ss_pred -------------Eeeeec----------CCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCce
Q 001314 128 -------------WTTAVM----------ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 184 (1102)
Q Consensus 128 -------------w~~~~~----------d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~ 184 (1102)
|+++.+ |+|++.-++|..=++|-=|.- +...++|-+|+|.++.. .
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l----------~rq~sRvLslsw~~~~~--~ 168 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL----------MRQKSRVLSLSWNPTGT--K 168 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec----------ccccceEEEEEecCCcc--E
Confidence 888733 555444555554444432221 12257898999987653 3
Q ss_pred EEEEEeCCceEEEecCC
Q 001314 185 LAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 185 ~a~vl~~~~l~l~~~~~ 201 (1102)
++.=..||-+.+|+...
T Consensus 169 i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKS 185 (691)
T ss_pred EEecccCceEEEEEcCC
Confidence 55556777788888644
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.28 E-value=0.025 Score=73.15 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=107.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcce-e-eeecC---CccccceeeeeecCC-CCeEEEEEeeCCCCeEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER-S-SFDIN---EQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrh-g-eF~L~---~~~~~~v~~L~Wn~D-S~iLAv~~~~~~~~~vq 77 (1102)
+++|.|.|+++|+.. .+..|.+|+-+.... + ....| ......|..+.|++. +..||..- ....|.
T Consensus 488 ~i~fs~dg~~latgg------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~---~Dg~v~ 558 (793)
T PLN00181 488 AIGFDRDGEFFATAG------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN---FEGVVQ 558 (793)
T ss_pred EEEECCCCCEEEEEe------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe---CCCeEE
Confidence 589999999999976 467899998654211 1 11111 011236889999985 67777653 345899
Q ss_pred EEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCC
Q 001314 78 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 156 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~V 156 (1102)
||+..+.+-- ..+. +.... .++.|||..+..|+.+..+|.+.+ |++... ..+.
T Consensus 559 lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~i----Wd~~~~--~~~~----------------- 612 (793)
T PLN00181 559 VWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKL----WSINQG--VSIG----------------- 612 (793)
T ss_pred EEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEE----EECCCC--cEEE-----------------
Confidence 9998775421 1111 12233 368999877765777777777665 443211 1111
Q ss_pred CCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCc
Q 001314 157 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 236 (1102)
Q Consensus 157 PPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 236 (1102)
.+.....|.+++|.+.+. +.+++-..++++.+|++.....+. .. .......+..+.|.+..
T Consensus 613 -------~~~~~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~------~~-----~~~h~~~V~~v~f~~~~ 673 (793)
T PLN00181 613 -------TIKTKANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPL------CT-----MIGHSKTVSYVRFVDSS 673 (793)
T ss_pred -------EEecCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccc------eE-----ecCCCCCEEEEEEeCCC
Confidence 112233577888865433 467777889999999975432110 00 01122346667787666
Q ss_pred eEEEEE
Q 001314 237 LLLSVS 242 (1102)
Q Consensus 237 ~ll~~~ 242 (1102)
+|+..+
T Consensus 674 ~lvs~s 679 (793)
T PLN00181 674 TLVSSS 679 (793)
T ss_pred EEEEEE
Confidence 555433
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.21 E-value=0.23 Score=61.00 Aligned_cols=212 Identities=18% Similarity=0.227 Sum_probs=117.2
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC------ccccceeeeeecCCCCeEEEEEeeCCCCeE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE------QIDSTVELLKWNCMSDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~------~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~v 76 (1102)
+++.|.|.|.+||... ...+-+|+==|-..+||..=. .....|+.|.|+.||.+|.+-.+ .-.+
T Consensus 100 ~~i~fSPng~~fav~~-------gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---D~s~ 169 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGC-------GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---DLSA 169 (893)
T ss_pred ceEEECCCCcEEEEEe-------cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---cceE
Confidence 6899999999999975 246777777776666654221 01235999999999999998542 2368
Q ss_pred EEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEE----------------------------
Q 001314 77 KICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFI---------------------------- 127 (1102)
Q Consensus 77 qLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~---------------------------- 127 (1102)
.||...-.+= |+--+--+.++.+ ...+.. +.+.|+.++.+|.+....+.
T Consensus 170 rl~~v~~~k~-~~~~~l~gHkd~VvacfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek 247 (893)
T KOG0291|consen 170 RLFGVDGNKN-LFTYALNGHKDYVVACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK 247 (893)
T ss_pred EEEEeccccc-cceEeccCCCcceEEEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence 8887765441 1122222233443 223333 33556666777765543222
Q ss_pred -----Eeee----ecCC-c---EEEEEeCCeEEeccCCCCCC-----CCcccccccccC-CceeEEEEecCCCCceEEEE
Q 001314 128 -----WTTA----VMEN-S---TALVIDGSKILVTPLSLSLM-----PPPMYLFSLKFP-TAVTEMAFYSKSSKNCLAAI 188 (1102)
Q Consensus 128 -----w~~~----~~d~-~---~vaVIDG~~l~lTp~r~a~V-----PPPM~~~~l~~~-~~i~~vaf~~~~~~~~~a~v 188 (1102)
|... ..+. + .++---|.++++|.|.-.+. |-=-.-+.+.+. .+|..|+|...+. -+| +
T Consensus 248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA-~ 324 (893)
T KOG0291|consen 248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIA-F 324 (893)
T ss_pred hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEE-E
Confidence 2111 0111 1 11224477778888776643 554444555554 6777788765432 233 3
Q ss_pred EeC--CceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEEE
Q 001314 189 LSD--GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 189 l~~--~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~ 241 (1102)
-+. |.|.+|+|....-. ++ .|..+..+..+..-.|+.+++.
T Consensus 325 g~~klgQLlVweWqsEsYV--lK----------QQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYV--LK----------QQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred cCCccceEEEEEeecccee--ee----------ccccccceeeEEECCCCcEEEe
Confidence 333 37888887532111 11 0123455666666666666654
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.18 E-value=0.045 Score=63.88 Aligned_cols=163 Identities=12% Similarity=-0.008 Sum_probs=82.9
Q ss_pred hhHHHhhhcHHHHHHHHHHcCCC----cH------HHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHHHHHHHhcc
Q 001314 715 YTIDLRLQRFENALKHIVSMGDS----YH------ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDV 780 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~g~~----~~------deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~ 780 (1102)
..+....|+|++|+..+.++-.. .. ......+... +.|++|++++ .........+..+|..+...
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Confidence 34444566677777666543110 00 0011222344 5666676666 11112234455566666667
Q ss_pred cChHHHHHHHHHcCCHH-------------HHHHHHHHcCCHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHcCChHHH
Q 001314 781 KCFEDAATTYFCCSSLE-------------KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEA 846 (1102)
Q Consensus 781 ~~~eeAa~~Y~~ag~~e-------------kAl~~y~~ag~W~~al~lA~~l-~~~~~el~~l~~~lA~~L~~~g~~~eA 846 (1102)
++|++|...|.++-... .....|...|++++|.....+. ...++ .......++..+...|++.+|
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHH
Confidence 77777776666552110 1112344556666666555442 11111 123445566677777777777
Q ss_pred HHHHHHhcC-CHH-------HHHHHHHHhcCHHHHHHHHHh
Q 001314 847 AKIALDYCG-DVT-------NGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 847 a~i~l~ylg-D~e-------~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
..++.+... ++. ..+.+|++.+++++|+....+
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777655332 221 234567777777777765443
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.17 E-value=0.11 Score=67.38 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=107.3
Q ss_pred ceeecc-CCCeEEEEeeccCCCCCCeEEEEecC-CcceeeeecCCccccceeeeeecC-CCCeEEEEEeeCCCCeEEEEE
Q 001314 4 VLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 4 ~LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERN-GLrhgeF~L~~~~~~~v~~L~Wn~-DS~iLAv~~~~~~~~~vqLWt 80 (1102)
.++|.| .|++||+.. .+..|.+|+-+ |-....| .+ ....|..++|++ |+++|+..- ....|.+|.
T Consensus 537 ~l~~~~~~~~~las~~------~Dg~v~lWd~~~~~~~~~~--~~-H~~~V~~l~~~p~~~~~L~Sgs---~Dg~v~iWd 604 (793)
T PLN00181 537 GICWNSYIKSQVASSN------FEGVVQVWDVARSQLVTEM--KE-HEKRVWSIDYSSADPTLLASGS---DDGSVKLWS 604 (793)
T ss_pred eEEeccCCCCEEEEEe------CCCeEEEEECCCCeEEEEe--cC-CCCCEEEEEEcCCCCCEEEEEc---CCCEEEEEE
Confidence 578988 688999876 35689999843 4333333 22 233699999995 889888763 245799999
Q ss_pred cccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEE-----ee-----------eecCCcEEEE-Ee
Q 001314 81 FSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW-----TT-----------AVMENSTALV-ID 142 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w-----~~-----------~~~d~~~vaV-ID 142 (1102)
+.... ..+.+.. ... .++.|++.....|++++.+|.+.+++..- .+ ...+...++. -.
T Consensus 605 ~~~~~--~~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 605 INQGV--SIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSST 680 (793)
T ss_pred CCCCc--EEEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEEC
Confidence 87543 1223322 223 45889777677788888888888776531 00 0112222222 22
Q ss_pred CCeEEeccCCCCCC---CCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 143 GSKILVTPLSLSLM---PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 143 G~~l~lTp~r~a~V---PPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
..+|++=.++...- ..|+.... .....++.++|++++ +.+++-..++++.+|...
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~--~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSD--GYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCC--CEEEEEeCCCEEEEEECC
Confidence 23466655543211 12332211 124567889998864 367777789999999864
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.16 E-value=0.52 Score=55.95 Aligned_cols=127 Identities=23% Similarity=0.313 Sum_probs=84.8
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEE-ecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFY-ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFF-ERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
++....|.|++.|++. .+..|++| -+-|-.-|||.=-......|-.|+|++||+-++-.- ..-.+.+|+.
T Consensus 194 ~~VRysPDG~~Fat~g------sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdV 264 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAG------SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDV 264 (603)
T ss_pred eeEEECCCCCeEEEec------CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEe
Confidence 3567899999999987 24456555 488999999875322233599999999999988764 1237999999
Q ss_pred ccceEEEEEEEEeccC--CC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEec
Q 001314 82 SNNHWYLKYEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 149 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~--~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lT 149 (1102)
+-.. |-+++.++.+ +. +.+.|- +.. |..+..+|.+..++ .+|.+..-||-|-+=-+|
T Consensus 265 s~~s--lv~t~~~~~~v~dqqvG~lWq--kd~-lItVSl~G~in~ln------~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 265 STNS--LVSTWPMGSTVEDQQVGCLWQ--KDH-LITVSLSGTINYLN------PSDPSVLKVISGHNKSIT 324 (603)
T ss_pred eccc--eEEEeecCCchhceEEEEEEe--CCe-EEEEEcCcEEEEec------ccCCChhheeccccccee
Confidence 9884 7778877765 33 567887 333 55556677665433 234444445555544444
No 35
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.12 E-value=0.019 Score=67.25 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=111.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--------ccc--cceeeeeecCCCCeEEEEEeeCCC
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--------QID--STVELLKWNCMSDLLAAVVRFEEY 73 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--------~~~--~~v~~L~Wn~DS~iLAv~~~~~~~ 73 (1102)
+|.|.|.|+.|.+.. ......+|+|-|+..+||.=-. ..+ ..+..-+|+++..---+-+ ...
T Consensus 219 sl~ys~Tg~~iLvvs------g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~D 290 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVS------GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYD 290 (641)
T ss_pred eeeecCCCCeEEEEe------cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCC
Confidence 689999999887765 2467889999999999996331 111 2367778999876443333 445
Q ss_pred CeEEEEEcccceEEEEEEEEeccC------CC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeE
Q 001314 74 DSVKICFFSNNHWYLKYEIRYLRR------DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 146 (1102)
Q Consensus 74 ~~vqLWt~~NYHWYLKqei~~~~~------~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l 146 (1102)
..+.+|..+|.+ ||--.|-.+ -. .+..|++.+++ ++.++.+|.+.+ |+.
T Consensus 291 gtlRiWdv~~~k---~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~----W~~---------------- 346 (641)
T KOG0772|consen 291 GTLRIWDVNNTK---SQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQI----WDK---------------- 346 (641)
T ss_pred CcEEEEecCCch---hheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceee----eec----------------
Confidence 589999999988 654443321 11 34789999988 787788887765 643
Q ss_pred EeccCCCCCCCCcccccccccC-CceeEEEEecCCCCceEEEEEeCCceEEEecCCCCcc
Q 001314 147 LVTPLSLSLMPPPMYLFSLKFP-TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 205 (1102)
Q Consensus 147 ~lTp~r~a~VPPPM~~~~l~~~-~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~ 205 (1102)
+..-|=|-|+-..-..+ ..|.+|+||.++. .++---.|++|-+|.+.....+
T Consensus 347 -----~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 347 -----GSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred -----CCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeeccccccc
Confidence 22335566666666555 4688999999763 3444456788999998655443
No 36
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.07 E-value=0.045 Score=61.20 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=129.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC-ccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc-
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF- 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~-~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~- 81 (1102)
+.+|.+.+.-||.+. +.++|-+||+.|-.|-+--=-. ..+..|..+.|++-|+-+-- |.....=++|+.
T Consensus 15 chAwn~drt~iAv~~------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt---cs~drnayVw~~~ 85 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSP------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT---CSHDRNAYVWTQP 85 (361)
T ss_pred eeeecCCCceEEecc------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE---ccCCCCccccccC
Confidence 568999999999975 5789999999999866511111 23457999999999976543 334446788998
Q ss_pred ccceEEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEE-EEE----Eeee----------------ecCCcEE
Q 001314 82 SNNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTY-NFI----WTTA----------------VMENSTA 138 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~-~~~----w~~~----------------~~d~~~v 138 (1102)
+--.| |.++..-.-++ .+++|.|-.-. ++++. +++++.. -|. |=++ .+++-..
T Consensus 86 ~~~~W--kptlvLlRiNrAAt~V~WsP~enk-FAVgS-gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 86 SGGTW--KPTLVLLRINRAATCVKWSPKENK-FAVGS-GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred CCCee--ccceeEEEeccceeeEeecCcCce-EEecc-CccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 77888 78877654444 57999996544 78754 4454433 232 3111 0111111
Q ss_pred EE--EeCCeEEec----cCCCCCCCCc----cccccccc-----CCceeEEEEecCCCCceEEEEEeCCceEEEecCCCC
Q 001314 139 LV--IDGSKILVT----PLSLSLMPPP----MYLFSLKF-----PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 203 (1102)
Q Consensus 139 aV--IDG~~l~lT----p~r~a~VPPP----M~~~~l~~-----~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~ 203 (1102)
|. -||+.-.+. -.....-||| |-|-++.. +.=|..|.|++++ |.++-+.++.++.+.....+.
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--CEeeEecCCCceEEeecCCCc
Confidence 11 333322222 2222334565 33333322 3348899998875 578888999999987754322
Q ss_pred ccccccCCceeeeeeccccccCceEEEEEecCceEEEE
Q 001314 204 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~ 241 (1102)
... . ...+....++...|.+++.+++.
T Consensus 240 ~~v------~-----~~~~~~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 240 ERV------Q-----SVATAQLPLLSVSWISENSVVAA 266 (361)
T ss_pred hhc------c-----chhhccCCceeeEeecCCceeec
Confidence 100 0 01122345777889999987764
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.07 E-value=0.12 Score=60.20 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=111.9
Q ss_pred hhHHHhhhcHHHHHHHHHHcCC---Cc---HHHHHHHHHHHhcchHHHHhcc-----CCcHh----HHHHHHHHHHHHhc
Q 001314 715 YTIDLRLQRFENALKHIVSMGD---SY---HADCLNLMKKYAQLFPLGLKLI-----TDPAK----MEQVLEAWADHLSD 779 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~g~---~~---~deAie~~~~~~~Ly~~AL~L~-----~d~~~----~~~i~~~yAd~L~~ 779 (1102)
..+....|+|++|+..|.++-. .. .........+. +.|++|++++ .+|.. ...++...|..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 4455567899999999988732 11 11122334566 8899999887 12221 22345667888889
Q ss_pred ccChHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 780 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~~--------ekAl~~y~~ag~W~~al~lA~~l~-~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
.+++++|..+|.++-.. -....+|...|++++|+.+..+.- .++.........++..+...|++.+|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987421 123367888999999988776542 233333455677888899999999999987
Q ss_pred HHhcC---C---HHHHHHHHHHhcCHHHHHHHHHh
Q 001314 851 LDYCG---D---VTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 851 l~ylg---D---~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
.+... + ...-+.+|.+.+++++|+.+..+
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 65332 1 12346778888999999887654
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.02 E-value=0.046 Score=69.77 Aligned_cols=134 Identities=14% Similarity=0.065 Sum_probs=63.4
Q ss_pred hHHHhhhcHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHHHHHHHhcccChHH
Q 001314 716 TIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFED 785 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~---g~~~~---deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~~~~ee 785 (1102)
.+....|++++|+..+.++ ++... -....+..+. +.|++|++++ ........++..+|.-+...+++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4444466666666666554 11111 1122233444 5666666655 1111122345555666666666666
Q ss_pred HHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 786 AATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 786 Aa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~l-~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
|...|.++-. +.....+|...|+|++|+....+. ...+ +.......++..+...|++.+|..++.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666655411 222334455556666665544332 1111 112344455555566666666655553
No 39
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.00 E-value=0.0065 Score=76.53 Aligned_cols=168 Identities=16% Similarity=0.255 Sum_probs=107.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecC--CcceeeeecCC---ccccceeeeeecCCCCeEEEEEee-CCCCeEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRF-EEYDSVK 77 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN--GLrhgeF~L~~---~~~~~v~~L~Wn~DS~iLAv~~~~-~~~~~vq 77 (1102)
.++|-|.|.+||+.. ++..|.+|.=+ |+.|. .+=|+ +.......|.|++||..||+.-.- .....++
T Consensus 176 Gvs~DP~Gky~ASqs------dDrtikvwrt~dw~i~k~-It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 176 GVSWDPIGKYFASQS------DDRTLKVWRTSDWGIEKS-ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ceEECCccCeeeeec------CCceEEEEEcccceeeEe-eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 589999999999965 46778777622 23221 11222 112358899999999999987542 3467899
Q ss_pred EEEcccceEEEEEEEEeccCCC--ceEEecC---CCCceEEEEeeCCcEEEEEEEEeee--ecCCcEEEEEeCCeEEecc
Q 001314 78 ICFFSNNHWYLKYEIRYLRRDG--IRFMWHP---TKPLQLICWTLDGQITTYNFIWTTA--VMENSTALVIDGSKILVTP 150 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~~~--~~~~W~~---e~pl~L~i~t~~g~~~~~~~~w~~~--~~d~~~vaVIDG~~l~lTp 150 (1102)
|-.+++|. -++.+-..+. .++.++| |++.. +|.-..++..+.+. ++.|+++.| =.|
T Consensus 249 IieR~tWk----~~~~LvGH~~p~evvrFnP~lfe~~~~------ng~~~~~~~~y~i~AvgSqDrSlSV------W~T- 311 (942)
T KOG0973|consen 249 IIERGTWK----VDKDLVGHSAPVEVVRFNPKLFERNNK------NGTSTQPNCYYCIAAVGSQDRSLSV------WNT- 311 (942)
T ss_pred EEecCCce----eeeeeecCCCceEEEEeChHHhccccc------cCCccCCCcceEEEEEecCCccEEE------Eec-
Confidence 99998875 5666544433 3467776 33331 23222222122111 223333333 122
Q ss_pred CCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 151 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 151 ~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
. -|-||.-..=-+..+|.|+++++++- .+.|+.-||++.++.+.+
T Consensus 312 -~---~~RPl~vi~~lf~~SI~DmsWspdG~--~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 312 -A---LPRPLFVIHNLFNKSIVDMSWSPDGF--SLFACSLDGTVALIHFEE 356 (942)
T ss_pred -C---CCCchhhhhhhhcCceeeeeEcCCCC--eEEEEecCCeEEEEEcch
Confidence 1 28899888878899999999999764 678889999999998754
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.00 E-value=0.084 Score=61.62 Aligned_cols=208 Identities=18% Similarity=0.285 Sum_probs=119.2
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
.+|+|.-+|++||+-. ....+.+|..+|-+-.-|.-- ...|..|.||.+|+.|+-- ....++-||...
T Consensus 239 T~L~Wn~~G~~LatG~------~~G~~riw~~~G~l~~tl~~H---kgPI~slKWnk~G~yilS~---~vD~ttilwd~~ 306 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGS------EDGEARIWNKDGNLISTLGQH---KGPIFSLKWNKKGTYILSG---GVDGTTILWDAH 306 (524)
T ss_pred ceEEecCCCCeEEEee------cCcEEEEEecCchhhhhhhcc---CCceEEEEEcCCCCEEEec---cCCccEEEEecc
Confidence 3699999999999965 456899999999887665443 2369999999999977643 224578999997
Q ss_pred cceEEEEEEEEecc----------------CC---------------------C-c-eEEecCCCCceEEEEeeCCcEE-
Q 001314 83 NNHWYLKYEIRYLR----------------RD---------------------G-I-RFMWHPTKPLQLICWTLDGQIT- 122 (1102)
Q Consensus 83 NYHWYLKqei~~~~----------------~~---------------------~-~-~~~W~~e~pl~L~i~t~~g~~~- 122 (1102)
.-.||---++.... .+ + + .++|+|...+ |.-.+.+|.+-
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L-LaS~SdD~Tlki 385 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL-LASCSDDGTLKI 385 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce-EEEecCCCeeEe
Confidence 77774333322110 00 0 1 2567666654 22212222222
Q ss_pred ------------------EEEEEEeeeec-----CCc--EEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEe
Q 001314 123 ------------------TYNFIWTTAVM-----ENS--TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFY 177 (1102)
Q Consensus 123 ------------------~~~~~w~~~~~-----d~~--~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~ 177 (1102)
+|...|+-... ..+ .+++-=-++|++=.... |-|++. -++-..||-+|+||
T Consensus 386 Ws~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---gv~i~~-f~kH~~pVysvafS 461 (524)
T KOG0273|consen 386 WSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---GVPIHT-LMKHQEPVYSVAFS 461 (524)
T ss_pred eecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---CceeEe-eccCCCceEEEEec
Confidence 23333433311 111 22233333444443322 333333 34667899999999
Q ss_pred cCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEEEE
Q 001314 178 SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 242 (1102)
Q Consensus 178 ~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~~ 242 (1102)
+++. .+|-=..+|.+++|..+...-.... +.-+.+--++|.-++..+++.
T Consensus 462 ~~g~--ylAsGs~dg~V~iws~~~~~l~~s~-------------~~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 462 PNGR--YLASGSLDGCVHIWSTKTGKLVKSY-------------QGTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred CCCc--EEEecCCCCeeEeccccchheeEee-------------cCCCeEEEEEEcCCCCEEEEE
Confidence 9764 3443356788888886543222111 223346678897666555543
No 41
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.96 E-value=0.014 Score=73.08 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=78.9
Q ss_pred CCcchhhHHHHHHhcCCh-----hhhchhHHHhhhcHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcchHHHHhcc
Q 001314 693 RDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI 760 (1102)
Q Consensus 693 kDPkEYLpfL~~L~~le~-----~~rr~~Id~~LkryekAl~hl~~~---g~~~----~deAie~~~~~~~Ly~~AL~L~ 760 (1102)
.++.+.+..+++.-.+.+ .+.+..+...+|+|++|+..|.++ .++. ...+.-+ .+. +.|+.|+..+
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~-~~~-g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ-YKE-GSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH-HHC-CCHHHHHHHH
Confidence 444445555554444321 134445556678888888877665 2221 1222222 233 5677777666
Q ss_pred -----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCH---------------HHHHHHHHHcCCHHHHHHHHhh-c
Q 001314 761 -----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------------EKAMKAYRASGNWSGVLTVAGL-L 819 (1102)
Q Consensus 761 -----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~---------------ekAl~~y~~ag~W~~al~lA~~-l 819 (1102)
..| ....++..+|.-+...|+|++|...|.+|-.. .+|...|...|++++|..+..+ +
T Consensus 457 ~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 457 RRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 122 12345566777777777777777777775322 1222333444666666655543 2
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 820 KLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 820 ~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
..+++. ......+|..+.+.|++.+|...|
T Consensus 536 ~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 536 IIDPEC-DIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred hcCCCc-HHHHHHHHHHHHHccCHHHHHHHH
Confidence 222211 123444555555555555555544
No 42
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.96 E-value=0.069 Score=67.60 Aligned_cols=159 Identities=9% Similarity=0.004 Sum_probs=99.9
Q ss_pred HHhhhcHHHHHHHHHHcCC----CcH---HHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHH
Q 001314 718 DLRLQRFENALKHIVSMGD----SYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 785 (1102)
Q Consensus 718 d~~LkryekAl~hl~~~g~----~~~---deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~ee 785 (1102)
....|++++|+..+.++-. +.. -.......+. +.|++|++.+ .+|. ...+...+|.-+...+++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 3457889999988776311 000 1112334455 7788888777 2332 24566678898889999986
Q ss_pred ----HHHHHHHcCCH----HHH----HHHHHHcCCHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 786 ----AATTYFCCSSL----EKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 786 ----Aa~~Y~~ag~~----ekA----l~~y~~ag~W~~al~lA~~l-~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
|..+|.++-.. ..+ ..++...|+|++|+...++. ...++ .......++..+.+.|++.+|...|.+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777776321 122 24566778888887765442 11221 224556688889999999999998865
Q ss_pred hcC-CHHH------HHHHHHHhcCHHHHHHHHHh
Q 001314 853 YCG-DVTN------GISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 853 ylg-D~e~------AI~~y~~~~~W~eA~rLa~~ 879 (1102)
.+. +++. +..+|...+++++|+....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 431 2221 23467888999999876443
No 43
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.0068 Score=68.34 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=86.6
Q ss_pred Cceeecc-CCCeEEEEeeccCCCCCCeEEEEe--------cC----CcceeeeecCCccccceeeeeecCCCCeEEEEEe
Q 001314 3 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE--------RN----GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 69 (1102)
Q Consensus 3 ~~LsWrP-sGnlIA~~qr~~~~~~~~~VvFFE--------RN----GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~ 69 (1102)
.+|+||| +++-||..+|. -|-|++ || +--|++. ++.+.-..|..|.||.||.+|+-.-
T Consensus 144 tclawRPlsaselavgCr~-------gIciW~~s~tln~~r~~~~~s~~~~qv-l~~pgh~pVtsmqwn~dgt~l~tAS- 214 (445)
T KOG2139|consen 144 TCLAWRPLSASELAVGCRA-------GICIWSDSRTLNANRNIRMMSTHHLQV-LQDPGHNPVTSMQWNEDGTILVTAS- 214 (445)
T ss_pred eEEEeccCCcceeeeeecc-------eeEEEEcCcccccccccccccccchhh-eeCCCCceeeEEEEcCCCCEEeecc-
Confidence 3799999 88888887753 566665 44 4444442 2233335699999999999998643
Q ss_pred eCCCCeEEEEEcccceEEEEEEEEeccCCCce-EEecCCCCceEEEEeeCCcEEEE--EEEEeee--ecCCcEE--EE--
Q 001314 70 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIR-FMWHPTKPLQLICWTLDGQITTY--NFIWTTA--VMENSTA--LV-- 140 (1102)
Q Consensus 70 ~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~-~~W~~e~pl~L~i~t~~g~~~~~--~~~w~~~--~~d~~~v--aV-- 140 (1102)
-....|.+|..+.-. |+-|..-.--+++ ++|+|.... |+..|.++..-.. +..|... ....|.| |+
T Consensus 215 -~gsssi~iWdpdtg~---~~pL~~~glgg~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 215 -FGSSSIMIWDPDTGQ---KIPLIPKGLGGFSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred -cCcceEEEEcCCCCC---cccccccCCCceeeEEEcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 456689999998877 6666511112243 799999887 5555666644332 2234333 1122222 33
Q ss_pred EeCCeEEeccCCC
Q 001314 141 IDGSKILVTPLSL 153 (1102)
Q Consensus 141 IDG~~l~lTp~r~ 153 (1102)
-+|..|+++-...
T Consensus 290 pcGsfLLf~~sgs 302 (445)
T KOG2139|consen 290 PCGSFLLFACSGS 302 (445)
T ss_pred CCCCEEEEEEcCC
Confidence 6799999886654
No 44
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.94 E-value=0.042 Score=69.50 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=120.7
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCC-cceeeeec----------------CCccccceeeeeecCCCCeEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDI----------------NEQIDSTVELLKWNCMSDLLAA 66 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNG-LrhgeF~L----------------~~~~~~~v~~L~Wn~DS~iLAv 66 (1102)
++.|.|+|.++|+-. ++.-|..+||++ .--..|.- ++ .+..|.++.|++|+.+||-
T Consensus 74 CVR~S~dG~~lAsGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred EEEECCCCCeEeecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEE
Confidence 567999999999954 467899999995 22223422 22 1235999999999999997
Q ss_pred EEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEE-EE-----------------
Q 001314 67 VVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYN-FI----------------- 127 (1102)
Q Consensus 67 ~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~-~~----------------- 127 (1102)
.- -..+|-+|....++ +-++--+....+ .+.|||...+ |+.-+.++.+.+++ ..
T Consensus 147 ~s---~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 147 VS---LDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred ec---ccceEEEEccccce---eeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 63 34589999998886 333322222223 3899998877 66544455555544 22
Q ss_pred -------Eeeeec----------CCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecC----CCC----
Q 001314 128 -------WTTAVM----------ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK----SSK---- 182 (1102)
Q Consensus 128 -------w~~~~~----------d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~----~~~---- 182 (1102)
|+-++. -..++++|+-++=+.+=.= +.-..++.+|.|.|. +.+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~L------------vGH~~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDL------------VGHSAPVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeee------------ecCCCceEEEEeChHHhccccccCCc
Confidence 332210 1135566665444432110 122457888898863 111
Q ss_pred ---c----eEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEE-EEEecCC
Q 001314 183 ---N----CLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL-SVSHHGP 246 (1102)
Q Consensus 183 ---~----~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll-~~~~~~~ 246 (1102)
+ .+|+--.|++|.+|.-..+... |. +.+..-.++.-+.|-.+|..| +.+.+|.
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-------~v----i~~lf~~SI~DmsWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPL-------FV----IHNLFNKSIVDMSWSPDGFSLFACSLDGT 348 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCch-------hh----hhhhhcCceeeeeEcCCCCeEEEEecCCe
Confidence 1 3344467899999986332111 11 001122367788998777544 4455553
No 45
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.051 Score=61.89 Aligned_cols=202 Identities=17% Similarity=0.250 Sum_probs=118.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeee-----cCCCCeEEEEEeeCCCCeEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKW-----NCMSDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~W-----n~DS~iLAv~~~~~~~~~vq 77 (1102)
+++|.|.|..||+-. .+..|.||. +-|...|. .||+. ..-|..|+| ++++..||-. .+...|.
T Consensus 162 cvawsPDgk~iASG~------~dg~I~lwdpktg~~~g~-~l~gH-~K~It~Lawep~hl~p~~r~las~---skDg~vr 230 (480)
T KOG0271|consen 162 CVAWSPDGKKIASGS------KDGSIRLWDPKTGQQIGR-ALRGH-KKWITALAWEPLHLVPPCRRLASS---SKDGSVR 230 (480)
T ss_pred EEEECCCcchhhccc------cCCeEEEecCCCCCcccc-cccCc-ccceeEEeecccccCCCccceecc---cCCCCEE
Confidence 689999999999965 356899998 56766666 44442 224999999 4678877754 3445799
Q ss_pred EEEcccceEEEEEEEEeccC--CC-ceEEecCCCCceEEEEeeCCcEEEEEEE-------------Eeee--ec------
Q 001314 78 ICFFSNNHWYLKYEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQITTYNFI-------------WTTA--VM------ 133 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~--~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~-------------w~~~--~~------ 133 (1102)
+|++.- ++++..... .+ .|++|--+.- ++-++.++.+-+++-. |.-. .+
T Consensus 231 IWd~~~-----~~~~~~lsgHT~~VTCvrwGG~gl--iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 231 IWDTKL-----GTCVRTLSGHTASVTCVRWGGEGL--IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred EEEccC-----ceEEEEeccCccceEEEEEcCCce--EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 999864 446654433 23 4689986652 3444444444443321 2110 00
Q ss_pred ------------------------------CC--cEEEEEeCCeEE-eccCCCCCCCCcccccccccCCceeEEEEecCC
Q 001314 134 ------------------------------EN--STALVIDGSKIL-VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 180 (1102)
Q Consensus 134 ------------------------------d~--~~vaVIDG~~l~-lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~ 180 (1102)
+. .+|.=-|+-++. --|+... -|+. +-..-..-||+|+|||+.
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~-rmtgHq~lVn~V~fSPd~ 379 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPIT-RMTGHQALVNHVSFSPDG 379 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchh-hhhchhhheeeEEECCCc
Confidence 01 144445544443 3444432 1111 011223458999999976
Q ss_pred CCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEEE
Q 001314 181 SKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 181 ~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~ 241 (1102)
. .||--.-|+++-||.-.+......+ ....+.+.|++|-.|.+|++.
T Consensus 380 r--~IASaSFDkSVkLW~g~tGk~lasf------------RGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 380 R--YIASASFDKSVKLWDGRTGKFLASF------------RGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred c--EEEEeecccceeeeeCCCcchhhhh------------hhccceeEEEEeccCccEEEE
Confidence 4 5555567888888875432111101 123346789999999887763
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.90 E-value=0.38 Score=61.48 Aligned_cols=184 Identities=11% Similarity=0.001 Sum_probs=108.6
Q ss_pred CCcchhhHHHHHHhcCCh-----hhhchhHHHhhhcHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcchHHHHhcc-
Q 001314 693 RDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI- 760 (1102)
Q Consensus 693 kDPkEYLpfL~~L~~le~-----~~rr~~Id~~LkryekAl~hl~~~---g~~~~deA---ie~~~~~~~Ly~~AL~L~- 760 (1102)
.++.+-+..++++....+ ......+....|++++|+.+|.++ .+...... ..+..+. +.+++|++.+
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 445444555555544311 133445666788899998888764 22222111 1223444 6777777776
Q ss_pred ----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHH
Q 001314 761 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAK 828 (1102)
Q Consensus 761 ----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag--------~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~ 828 (1102)
.+|. ...++..+|..+...+++++|...|.++- .+-....+|...|++++|+.+.+..-.....-..
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 1332 23455667777777888888888887761 1223446677778888887776553110011124
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 001314 829 LAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa~i~l~ylg----D---~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
....++..+...|++.+|...|.+.+. + ......+|.+.++|++|+....
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667777788888888888887754321 1 2234566777778888876544
No 47
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.052 Score=58.75 Aligned_cols=210 Identities=21% Similarity=0.291 Sum_probs=127.0
Q ss_pred CCCeEEEEeeccCCCCCCeEEEEec--CCcceeeeecCCccccceeeeeecC--CCCeEEEEEeeCCCC-eEEEEEcccc
Q 001314 10 SGANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQIDSTVELLKWNC--MSDLLAAVVRFEEYD-SVKICFFSNN 84 (1102)
Q Consensus 10 sGnlIA~~qr~~~~~~~~~VvFFER--NGLrhgeF~L~~~~~~~v~~L~Wn~--DS~iLAv~~~~~~~~-~vqLWt~~NY 84 (1102)
.|..||+.. .+..|.+||. ||.-.-.-+|++.. .+|...+|-. -|+|||-.- +| .|.+|--.|-
T Consensus 22 ygkrlATcs------SD~tVkIf~v~~n~~s~ll~~L~Gh~-GPVwqv~wahPk~G~iLAScs----YDgkVIiWke~~g 90 (299)
T KOG1332|consen 22 YGKRLATCS------SDGTVKIFEVRNNGQSKLLAELTGHS-GPVWKVAWAHPKFGTILASCS----YDGKVIIWKEENG 90 (299)
T ss_pred hcceeeeec------CCccEEEEEEcCCCCceeeeEecCCC-CCeeEEeecccccCcEeeEee----cCceEEEEecCCC
Confidence 588899987 4568888874 34324455666533 3799999988 999999764 33 6999999999
Q ss_pred eEEEEEEEEeccCCCceEEecC-CCCceEEEEeeCCcEEEEEEE----Eeee----ecCCcEEEE------EeCC-----
Q 001314 85 HWYLKYEIRYLRRDGIRFMWHP-TKPLQLICWTLDGQITTYNFI----WTTA----VMENSTALV------IDGS----- 144 (1102)
Q Consensus 85 HWYLKqei~~~~~~~~~~~W~~-e~pl~L~i~t~~g~~~~~~~~----w~~~----~~d~~~vaV------IDG~----- 144 (1102)
.|--++|...-..+-.++.|-| +-.+.|++++++|.+-+.++. |.+. .+..|+-+| ++|.
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 9977776654333223455543 233559999999999888876 4332 222222221 3332
Q ss_pred ---------------eEEeccCCCCCCCCcccccccc-cCCceeEEEEecCCC--CceEEEEEeCCceEEEecCCC-Ccc
Q 001314 145 ---------------KILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSS--KNCLAAILSDGCLCVVDLPAP-DML 205 (1102)
Q Consensus 145 ---------------~l~lTp~r~a~VPPPM~~~~l~-~~~~i~~vaf~~~~~--~~~~a~vl~~~~l~l~~~~~~-~~~ 205 (1102)
.|++=-|... -=-|- +.++ -..=|.|||..|+.+ +.+||-...||++.||+.... +.|
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSD--SWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred cccccceeeccCCccceeeeecCCc--chhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 1222222111 00000 0000 011277999998753 367888899999999997532 222
Q ss_pred ccccCCceeeeeeccccccCceEEEEEecCceEEEEEe
Q 001314 206 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 243 (1102)
Q Consensus 206 ~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~~~ 243 (1102)
. + ..+....+.+-++.|--.+.+|+|+.
T Consensus 248 k---~-------tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 248 K---K-------TLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred c---c-------cccccCCcceEEEEEeccccEEEEec
Confidence 1 1 11122334577888988888888753
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.84 E-value=0.2 Score=63.77 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=93.0
Q ss_pred hhcHHHHHHHHHHcC---C--C--cHHHHHHHHHHHhcchHHHHhccC-----CcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 721 LQRFENALKHIVSMG---D--S--YHADCLNLMKKYAQLFPLGLKLIT-----DPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 721 LkryekAl~hl~~~g---~--~--~~deAie~~~~~~~Ly~~AL~L~~-----d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
.|++++|++.|.++. - + -+.-.+....+. +.+++|.+++. +-..-..++....+-+...|++++|..
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 566777777776541 1 1 123444445565 66666666651 100011233344455555677777777
Q ss_pred HHHHcCC-----HHHHHHHHHHcCCHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----
Q 001314 789 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD---- 856 (1102)
Q Consensus 789 ~Y~~ag~-----~ekAl~~y~~ag~W~~al~lA~~l---~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD---- 856 (1102)
+|..... |.-.+.+|.+.|++++|+.+-.++ +..++. ..+..+...+...|+.++|.++|.....+
T Consensus 382 vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~--~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH--VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 7776542 456667777888888887765542 333332 23666677777788888888877553221
Q ss_pred -----HHHHHHHHHHhcCHHHHHHHHHh
Q 001314 857 -----VTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 857 -----~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
+..-|++|++++++++|..+..+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 34567888888888888777654
No 49
>PLN03077 Protein ECB2; Provisional
Probab=96.83 E-value=0.11 Score=67.87 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=68.4
Q ss_pred hcHHHHHHHHHHcCCC--cHHHHHHHHHHHhcchHHHHhccC-------CcHh--HHHHHHHHHHHHhcccChHHHHHHH
Q 001314 722 QRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLIT-------DPAK--MEQVLEAWADHLSDVKCFEDAATTY 790 (1102)
Q Consensus 722 kryekAl~hl~~~g~~--~~deAie~~~~~~~Ly~~AL~L~~-------d~~~--~~~i~~~yAd~L~~~~~~eeAa~~Y 790 (1102)
|+.++|.+.|.++..+ -+.-.+..+.+| +.+++|++++. .|+. +..+.. -+...|.+++|..+|
T Consensus 538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~----a~~~~g~v~ea~~~f 612 (857)
T PLN03077 538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLC----ACSRSGMVTQGLEYF 612 (857)
T ss_pred CCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHH----HHhhcChHHHHHHHH
Confidence 4566666666555211 134445555566 66666666661 1221 122222 233345566666665
Q ss_pred HHcC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHH---HHh----
Q 001314 791 FCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA---LDY---- 853 (1102)
Q Consensus 791 ~~ag----------~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~---l~y---- 853 (1102)
.... .|.--+++|.++|++++|..+...++..++. .+...+...+...|..+.|..+. ++.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~--~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP--AVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 5442 1334445566666666666665555433321 23333333444344443333222 110
Q ss_pred cCCHHHHHHHHHHhcCHHHHHHHH
Q 001314 854 CGDVTNGISLLIDARDWEEALRVA 877 (1102)
Q Consensus 854 lgD~e~AI~~y~~~~~W~eA~rLa 877 (1102)
.+-+-.-..+|...++|++|.++-
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHH
Confidence 112333445566666666665543
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.015 Score=68.05 Aligned_cols=129 Identities=21% Similarity=0.303 Sum_probs=92.9
Q ss_pred cchHHHHHHHHhccC------HHHHHHHHHHhcCCcchhhHHHHHHhcCCh-----hhhchhHHHhhhcHHHHHHHHHHc
Q 001314 666 ADSEAVYEAALGLYD------LNLAAIVALNSQRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM 734 (1102)
Q Consensus 666 vDvn~Ly~~ALg~YD------l~Lal~VAq~sqkDPkEYLpfL~~L~~le~-----~~rr~~Id~~LkryekAl~hl~~~ 734 (1102)
.++...++.|..+.- +.++++-+++ -||-+|..++++-.++++ .+.|..|.--|++|+.|+.-|-++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777776542 2455555553 678889999999999943 278889988999999999999887
Q ss_pred CC---C----cHHHHHHHHHHHhcchHHHHhccCCcHh----HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHH
Q 001314 735 GD---S----YHADCLNLMKKYAQLFPLGLKLITDPAK----MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK 798 (1102)
Q Consensus 735 g~---~----~~deAie~~~~~~~Ly~~AL~L~~d~~~----~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ek 798 (1102)
-. + +.+.|.-.++.| .+..+...|.+..+ ..+++..||+-|-++++|.+|.++|..|-..+.
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQH--KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 43 1 235566556654 56666666622221 247788999999999999999999999866554
No 51
>PTZ00421 coronin; Provisional
Probab=96.73 E-value=0.17 Score=61.75 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=103.2
Q ss_pred ceeecc-CCCeEEEEeeccCCCCCCeEEEEecC--Cccee----eeecCCccccceeeeeecCCC-CeEEEEEeeCCCCe
Q 001314 4 VLEWMP-SGANIAAVYDRKSENKCPSIVFYERN--GLERS----SFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDS 75 (1102)
Q Consensus 4 ~LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERN--GLrhg----eF~L~~~~~~~v~~L~Wn~DS-~iLAv~~~~~~~~~ 75 (1102)
.++|.| .|++||+.. .+..|.+|+-+ |+... ...|.+ ....|..++|++++ .+||..- ....
T Consensus 80 ~v~fsP~d~~~LaSgS------~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs---~Dgt 149 (493)
T PTZ00421 80 DVAFNPFDPQKLFTAS------EDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAG---ADMV 149 (493)
T ss_pred EEEEcCCCCCEEEEEe------CCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEe---CCCE
Confidence 589999 889999876 35789999854 32111 122333 23469999999986 6887653 2347
Q ss_pred EEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEE-----Eeeeec------------CCcE
Q 001314 76 VKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI-----WTTAVM------------ENST 137 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~-----w~~~~~------------d~~~ 137 (1102)
|.||+..... ..+.+. +..+. .++.|+|...+ |+.++.+|.+.+++.. .....+ +.+.
T Consensus 150 VrIWDl~tg~--~~~~l~-~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 150 VNVWDVERGK--AVEVIK-CHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred EEEEECCCCe--EEEEEc-CCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 9999988754 122222 12233 35899997665 7777778888876643 111111 1112
Q ss_pred EEEE--e---CCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEE-eCCceEEEecCC
Q 001314 138 ALVI--D---GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL-SDGCLCVVDLPA 201 (1102)
Q Consensus 138 vaVI--D---G~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl-~~~~l~l~~~~~ 201 (1102)
++.+ + -.+|++=.+|... .|+....+.....+....|+++. +.+++.- .++.+.+|++..
T Consensus 226 ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~--~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 226 IITLGCSKSQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDT--NLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEecCCCCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCC--CEEEEEEeCCCeEEEEEeeC
Confidence 2111 1 1245555555432 35554444444445455565543 3344333 478899998753
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.72 E-value=0.11 Score=67.01 Aligned_cols=106 Identities=17% Similarity=0.007 Sum_probs=55.8
Q ss_pred HHHHHhcccChHHHHHHHHHcC--C-------HHHHHH---HHHHcCCHHHHHHHHhhcCCC---------------hHH
Q 001314 773 WADHLSDVKCFEDAATTYFCCS--S-------LEKAMK---AYRASGNWSGVLTVAGLLKLG---------------KDE 825 (1102)
Q Consensus 773 yAd~L~~~~~~eeAa~~Y~~ag--~-------~ekAl~---~y~~ag~W~~al~lA~~l~~~---------------~~e 825 (1102)
.|+.+...+++++|..+|.++- + .+.... ++...|++++|+.....+... .+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4666667777777777776652 1 111222 445667777776654432111 111
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHHHH
Q 001314 826 VAKLAQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 826 l~~l~~~lA~~L~~~g~~~eAa~i~l~yl----gD~---e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
.......+|..+...|++.+|..++-+-+ +++ -.-..++...+++++|+.+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12344566777777777777777764422 111 122334555566666665543
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.71 E-value=0.12 Score=69.56 Aligned_cols=128 Identities=12% Similarity=0.078 Sum_probs=78.6
Q ss_pred HHHhcchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 001314 747 KKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 817 (1102)
Q Consensus 747 ~~~~~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~ 817 (1102)
... +.+++|++++ ..|.. ..+....|+.+...+++++|...|.++-. .-....+|...|++++|+....
T Consensus 584 ~~~-G~~~eA~~~l~~~p~~-~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 584 RDS-GKEAEAEALLRQQPPS-TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHC-CCHHHHHHHHHhCCCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344 6677777777 33322 23456678888888888888888876632 1123466777888888877666
Q ss_pred hcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---------HHHHHHHHHhcCHHHHHHH
Q 001314 818 LLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV---------TNGISLLIDARDWEEALRV 876 (1102)
Q Consensus 818 ~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylg----D~---------e~AI~~y~~~~~W~eA~rL 876 (1102)
.+.....+-......+|..+.+.|++.+|.++|.+-+. ++ ..+..++...+++++|+..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 54211111123455577777788888888887755322 11 1124556777888888765
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.12 Score=56.83 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=108.7
Q ss_pred eeeecCCccccceeeeeecCC-CCeEEEEEeeCCCCeEEEEEcc-cceEEEEEEEEeccCCCc-eEEecCCCCceEEEEe
Q 001314 40 SSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWT 116 (1102)
Q Consensus 40 geF~L~~~~~~~v~~L~Wn~D-S~iLAv~~~~~~~~~vqLWt~~-NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t 116 (1102)
.++.|++..+ +|..++||+- |.+||-. .....|.+|.++ ---|-+|..+.=+..-.+ ++.|+|-..+ |+.++
T Consensus 6 ~~~~~~gh~~-r~W~~awhp~~g~ilAsc---g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~-La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKD-RVWSVAWHPGKGVILASC---GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY-LASAS 80 (312)
T ss_pred eEEeecCCCC-cEEEEEeccCCceEEEee---cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE-EEEee
Confidence 4677776555 7999999999 8888854 444589999999 456999987753322223 5999998775 66654
Q ss_pred eCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEE
Q 001314 117 LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 196 (1102)
Q Consensus 117 ~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l 196 (1102)
-++..- .|.-...+..+|++|.|- +.-|.+|||+.++ +.+|...-++++-+
T Consensus 81 FD~t~~----Iw~k~~~efecv~~lEGH-----------------------EnEVK~Vaws~sG--~~LATCSRDKSVWi 131 (312)
T KOG0645|consen 81 FDATVV----IWKKEDGEFECVATLEGH-----------------------ENEVKCVAWSASG--NYLATCSRDKSVWI 131 (312)
T ss_pred ccceEE----EeecCCCceeEEeeeecc-----------------------ccceeEEEEcCCC--CEEEEeeCCCeEEE
Confidence 333332 244333455677888875 3458899998865 58899889999999
Q ss_pred EecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEEEEec
Q 001314 197 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 244 (1102)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~~~~ 244 (1102)
|+.++.+. |.... .++..-..+.+..|-+..-||+...+
T Consensus 132 We~deddE--------fec~a-VL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 132 WEIDEDDE--------FECIA-VLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred EEecCCCc--------EEEEe-eeccccccccEEEEcCCcceeEEecc
Confidence 99864333 33211 22333345778889876667765433
No 55
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.63 E-value=0.099 Score=64.73 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhc-chHHHHhcc-----CCcHhHHHHHHHHHHHHhc---ccChHHHHHHHHHcCCHHHHHHHHHH----
Q 001314 739 HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSD---VKCFEDAATTYFCCSSLEKAMKAYRA---- 805 (1102)
Q Consensus 739 ~deAie~~~~~~~-Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~---~~~~eeAa~~Y~~ag~~ekAl~~y~~---- 805 (1102)
.+..++++..+.+ .|+.+-++- .+.+.++.+.+..|..-.. .++.-+++++|...|+..-....|+.
T Consensus 353 qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~ 432 (631)
T PF12234_consen 353 QEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWH 432 (631)
T ss_pred HHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcc
Confidence 5788888876523 699987764 5778899999988875444 47888999999999998666666663
Q ss_pred cCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCCh-
Q 001314 806 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRRE- 883 (1102)
Q Consensus 806 ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~-~~~~W~eA~rLa~~h~~~- 883 (1102)
.++=+.+--++. +.+++..+.-|.+=|=.|..+++|..||..|+- +|++..||+.++ +.++..=|+-+|..+...
T Consensus 433 ~~~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLL-ag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~ 509 (631)
T PF12234_consen 433 KEQQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAAFFLL-AGSLKDAVNVCLRQLNDPQLAIAIARLYEGDN 509 (631)
T ss_pred cccHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHHHHHh-cccHHHHHHHHHHHccChhHHHHHHHHHcCCC
Confidence 333333333433 346678888999999999999999999999986 999999999998 458899999999887643
Q ss_pred -----hhHHH-HHHhHHHHHHHHHHH
Q 001314 884 -----DLITK-VKHASLECASSLIGE 903 (1102)
Q Consensus 884 -----dL~et-v~~a~l~~a~~~~~e 903 (1102)
++++. |.|.+.+....-+..
T Consensus 510 gp~~~~ll~~~vLp~a~~~~d~wl~s 535 (631)
T PF12234_consen 510 GPVLKKLLEEHVLPEAIKEGDRWLAS 535 (631)
T ss_pred chHHHHHHHHhhhccccccCCHHHHH
Confidence 35544 555544443333333
No 56
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.62 E-value=0.11 Score=62.28 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee-cCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~-L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..+|.|.|+.||.+... +++..|..++-.+-+...+. +++ ......|++||+.||+....+..-.|.+|...
T Consensus 208 ~p~wSPDG~~la~~s~~---~~~~~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFE---NKKSQLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cceEcCCCCEEEEEEec---CCCcEEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 47899999999987642 23567888886653322221 222 34468999999999987633322245555554
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEe-eCCcEEEEE
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT-LDGQITTYN 125 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t-~~g~~~~~~ 125 (1102)
.-. ...+...........|+|.... |++.+ ..|...+|.
T Consensus 281 ~~~---~~~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 281 GGT---PSQLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYR 320 (429)
T ss_pred CCC---eEeeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEE
Confidence 333 1222211111135899997654 44433 345554444
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.59 E-value=0.16 Score=59.58 Aligned_cols=178 Identities=12% Similarity=0.139 Sum_probs=116.4
Q ss_pred Cceeecc-CCCeEEEEeeccCCCCCCeEEEEecCCccee--eeecCCccccceeeeeecCCCCeE-EEEEeeCCCCeEEE
Q 001314 3 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERS--SFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKI 78 (1102)
Q Consensus 3 ~~LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERNGLrhg--eF~L~~~~~~~v~~L~Wn~DS~iL-Av~~~~~~~~~vqL 78 (1102)
.++-|-| +|.|+++.. -+..|-+||=-+.++= -|. + -...|.++.||.+|.-+ ..-. .-.|.|
T Consensus 218 sai~~fp~~~hLlLS~g------mD~~vklW~vy~~~~~lrtf~--g-H~k~Vrd~~~s~~g~~fLS~sf----D~~lKl 284 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGG------MDGLVKLWNVYDDRRCLRTFK--G-HRKPVRDASFNNCGTSFLSASF----DRFLKL 284 (503)
T ss_pred chhhhccceeeEEEecC------CCceEEEEEEecCcceehhhh--c-chhhhhhhhccccCCeeeeeec----ceeeee
Confidence 3678999 999999975 4678888874432211 111 1 12359999999998644 4433 237999
Q ss_pred EEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEE--------------Eeee-ecCCc--EEEE
Q 001314 79 CFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI--------------WTTA-VMENS--TALV 140 (1102)
Q Consensus 79 Wt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~--------------w~~~-~~d~~--~vaV 140 (1102)
|++-.-. ....|..... .++++||.++..+.+|+++|.+..+|.. |... .-++| .|.-
T Consensus 285 wDtETG~----~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 285 WDTETGQ----VLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eccccce----EEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9987654 2223433333 4799999999989999999999986655 1111 11222 4555
Q ss_pred EeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 141 IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 141 IDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
.|-+++++=-++. |-||..-.-.--.+..+++.+|+. +-+++-..++.+.+|....+
T Consensus 361 SDdks~riWe~~~---~v~ik~i~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 361 SDDKSVRIWENRI---PVPIKNIADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred ccCccEEEEEcCC---CccchhhcchhhccCcceecCCCC--CeehhhccCceEEEEecccc
Confidence 6666777777776 778876654444455567766643 46777788888999986443
No 58
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.58 E-value=0.39 Score=63.73 Aligned_cols=156 Identities=10% Similarity=0.009 Sum_probs=109.9
Q ss_pred hhcHHHHHHHHHHcCC-------C--cHHHHHHHHHHHhcchHHHHhccC-----CcHhHHHHHHHHHHHHhcccChHHH
Q 001314 721 LQRFENALKHIVSMGD-------S--YHADCLNLMKKYAQLFPLGLKLIT-----DPAKMEQVLEAWADHLSDVKCFEDA 786 (1102)
Q Consensus 721 LkryekAl~hl~~~g~-------~--~~deAie~~~~~~~Ly~~AL~L~~-----d~~~~~~i~~~yAd~L~~~~~~eeA 786 (1102)
.|++++|.+.|.++.. + -+...+..+.+. +.+++|+++|. +-..-...+.....-+...+++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 5788888888876621 1 135567777887 89999999881 1111223455555556678899999
Q ss_pred HHHHHHcCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 787 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 787 a~~Y~~ag~---------~ekAl~~y~~ag~W~~al~lA~~l---~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
..+|..... |.-.+++|.++|++++|+.+-..+ +..++ ...+..+...+...|++++|.++|.+..
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 998876532 456778888999999887765543 22222 2468888889999999999999986531
Q ss_pred -----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 001314 855 -----GD---VTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 855 -----gD---~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
-| +...|..||+.+++++|+.+...
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12 45688999999999999987664
No 59
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.56 E-value=0.16 Score=58.39 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=104.5
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc---cccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ---IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~---~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
+...|+|.++|++. .+.++++|+=--..| |.|-.+ ....|..+.|+||+..|-. |...+.+.||+.
T Consensus 230 l~FS~nGkyLAsaS------kD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLla---Cg~~e~~~lwDv 298 (519)
T KOG0293|consen 230 LQFSHNGKYLASAS------KDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLA---CGFDEVLSLWDV 298 (519)
T ss_pred EEEcCCCeeEeecc------CCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEe---cCchHheeeccC
Confidence 56789999999987 356888888777777 666632 2236999999999998864 355667999987
Q ss_pred ccceEEEEEEEEeccC--CC-ceEEecCCCCceEEEEeeCCcEEEEEEE------EeeeecCCcEEEE---EeCCeEEec
Q 001314 82 SNNHWYLKYEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQITTYNFI------WTTAVMENSTALV---IDGSKILVT 149 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~--~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~------w~~~~~d~~~vaV---IDG~~l~lT 149 (1102)
..--=.. .|+.. .. .+..|-|.. .++++|..++++...+.. |.- +-+..+.-+ -||+.+++-
T Consensus 299 ~tgd~~~----~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~g-vr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 299 DTGDLRH----LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEG-VRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred Ccchhhh----hcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccc-cccceeEEEEEcCCCcEEEEE
Confidence 6543111 12222 22 468999964 558888888777653332 211 112222222 255555433
Q ss_pred cCCCCCCCCccccc---------ccccCCceeEEEEecCCCCceEEEE-EeCCceEEEecCC
Q 001314 150 PLSLSLMPPPMYLF---------SLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPA 201 (1102)
Q Consensus 150 p~r~a~VPPPM~~~---------~l~~~~~i~~vaf~~~~~~~~~a~v-l~~~~l~l~~~~~ 201 (1102)
. +-|-+..+ -+..+.+|....+|.++ .++.+ +.+..+++|.+.+
T Consensus 373 ~-----~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~---k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 373 T-----VDKKIRLYNREARVDRGLISEEQPITSFSISKDG---KLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred e-----cccceeeechhhhhhhccccccCceeEEEEcCCC---cEEEEEcccCeeEEeecch
Confidence 2 12222222 23446677666666654 23433 8899999999864
No 60
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=0.51 Score=54.45 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=77.4
Q ss_pred ccChHHHHHHHHHcCCHHH-----HHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 780 VKCFEDAATTYFCCSSLEK-----AMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~~ek-----Al~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
.|+.+.|..+-..-+-.++ -+++|...++|+++...|.. ..++ -=+.-.++.+.+.|...+|.. |+..+
T Consensus 190 ~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsP----IGyepFv~~~~~~~~~~eA~~-yI~k~ 263 (319)
T PF04840_consen 190 MGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-KKSP----IGYEPFVEACLKYGNKKEASK-YIPKI 263 (319)
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCC----CChHHHHHHHHHCCCHHHHHH-HHHhC
Confidence 3444455444443333332 24788899999999998864 2232 125567778888999999886 56779
Q ss_pred CCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHh
Q 001314 855 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHA 892 (1102)
Q Consensus 855 gD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a 892 (1102)
.+ ++-+++|++.++|.+|...|.+.+..+.+..|...
T Consensus 264 ~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 264 PD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKR 300 (319)
T ss_pred Ch-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 99999999999999999999999988877765443
No 61
>PTZ00420 coronin; Provisional
Probab=96.52 E-value=0.3 Score=60.44 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=67.9
Q ss_pred ceeeccC-CCeEEEEeeccCCCCCCeEEEEecC-C-ccee-----eeecCCccccceeeeeecCCCCeEEEEEeeCCCCe
Q 001314 4 VLEWMPS-GANIAAVYDRKSENKCPSIVFYERN-G-LERS-----SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 75 (1102)
Q Consensus 4 ~LsWrPs-GnlIA~~qr~~~~~~~~~VvFFERN-G-Lrhg-----eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~ 75 (1102)
.++|.|. |++||+.. .+..|.+|+=. | ..-. .-.+.+. ...|..++|++++..+.+.. .....
T Consensus 79 ~lafsP~~~~lLASgS------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSg--S~Dgt 149 (568)
T PTZ00420 79 DLQFNPCFSEILASGS------EDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSS--GFDSF 149 (568)
T ss_pred EEEEcCCCCCEEEEEe------CCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEECCCCCeEEEEE--eCCCe
Confidence 5899995 89999976 35688888732 2 2111 0122222 23699999999987543322 12357
Q ss_pred EEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEE
Q 001314 76 VKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~ 126 (1102)
|.+|+..+.. ...++. .... .++.|++...+ |+.++.+|.+.+++.
T Consensus 150 IrIWDl~tg~--~~~~i~--~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~ 196 (568)
T PTZ00420 150 VNIWDIENEK--RAFQIN--MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEEECCCCc--EEEEEe--cCCcEEEEEECCCCCE-EEEEecCCEEEEEEC
Confidence 9999998754 122232 2233 36899998765 666556677777664
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.49 E-value=0.27 Score=61.77 Aligned_cols=186 Identities=16% Similarity=0.072 Sum_probs=113.5
Q ss_pred HHhcCCcchhhHHHHHHhcCChh-----hhchhHHHhhhcHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcchHHH
Q 001314 689 LNSQRDPKEFLPYLQELESMPPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLG 756 (1102)
Q Consensus 689 q~sqkDPkEYLpfL~~L~~le~~-----~rr~~Id~~LkryekAl~hl~~~---g~~~~----deAie~~~~~~~Ly~~A 756 (1102)
...++|+.+=+..+++.-.+.+. .....+...+|+|++|+..|.++ .+++. ..+. +.... +.|++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~-~~~~~-g~~~~A 418 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ-LHFIK-GEFAQA 418 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc-CCHHHH
Confidence 34567887778888877776443 35567777899999999998764 32222 1222 23344 788888
Q ss_pred Hhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhh-cCCC
Q 001314 757 LKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL-LKLG 822 (1102)
Q Consensus 757 L~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~-l~~~ 822 (1102)
+..| .+|+.. ..+...|.-+...+++++|..+|.++-. +...-.+|...|+|++|+....+ +.+.
T Consensus 419 ~~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 419 GKDYQKSIDLDPDFI-FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHcCccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 8877 244433 3455678888999999999999998732 11223567778888888765433 1111
Q ss_pred hH------HHHHHHHHHHHHHHHcCChHHHHHHHHHhc-CCH------HHHHHHHHHhcCHHHHHHHH
Q 001314 823 KD------EVAKLAQELCEELQALGKPGEAAKIALDYC-GDV------TNGISLLIDARDWEEALRVA 877 (1102)
Q Consensus 823 ~~------el~~l~~~lA~~L~~~g~~~eAa~i~l~yl-gD~------e~AI~~y~~~~~W~eA~rLa 877 (1102)
++ .+..+.......+...|++.+|..+|.+-+ .++ ..-..+|.+.+++++|+...
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11 111222223333444688888888875422 121 23355666777777777643
No 63
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.0002 Score=83.00 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=125.8
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATT 789 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~ 789 (1102)
+--..++--+.+||+|.+++.+... .-+|++|..|. .|++|+-+. .+|..+..+-..|++.|+..+.+..+...
T Consensus 49 lavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~ 124 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLA 124 (615)
T ss_pred eehhhhhhHHHhhhhhcceecccCC--chhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHh
Confidence 4446677779999999999999976 78999999994 999999998 79999999999999999999999999999
Q ss_pred HHHcCC------HHHHH--------HHHHHcC-CHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 790 YFCCSS------LEKAM--------KAYRASG-NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 790 Y~~ag~------~ekAl--------~~y~~ag-~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
|++.+. ++.-+ +.....| +.|+...+|..+. + ..+..+++..|...+++.||+.+| +.-
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE----d-~vil~dcd~~L~v~~qegeta~lt-evg 198 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE----D-YVILCDCDNTLSVTTQEGETASLT-EVG 198 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc----c-eeeecCcHHHHHHhhhccceeeee-ecc
Confidence 998753 22222 3333445 6777777766552 2 357889999999999999999998 558
Q ss_pred CCHHHHHHHHHHhcCHHHHH
Q 001314 855 GDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 855 gD~e~AI~~y~~~~~W~eA~ 874 (1102)
|.|+.|--.|.+.+.|..|=
T Consensus 199 gepdnm~~~y~k~n~w~kag 218 (615)
T KOG2247|consen 199 GEPDNMDFFYGKVNGWGKAG 218 (615)
T ss_pred Cccchhhhheeeeecccccc
Confidence 99999999999999998874
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.28 Score=61.99 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=112.4
Q ss_pred hHHHhhhcHHHHHHHHHHcCC-CcHHHHHHHHHHHhcchHHHHhcc-------CCc----H---------hHHHH-----
Q 001314 716 TIDLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-------TDP----A---------KMEQV----- 769 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~g~-~~~deAie~~~~~~~Ly~~AL~L~-------~d~----~---------~~~~i----- 769 (1102)
+-...-++..+|+..|+++.+ ..+.+.++...+. +-|+.-+... ..| + ++.++
T Consensus 1112 kAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc
Confidence 333347889999999999865 3467777777776 7787765543 111 1 11111
Q ss_pred ------HHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCh
Q 001314 770 ------LEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 843 (1102)
Q Consensus 770 ------~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~ 843 (1102)
....||-+.+.+.|+.|-++|..-.++.+........|.++.|...|++-+-. .-+++++-.|. ..+.|
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~-ktWK~VcfaCv----d~~EF 1265 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST-KTWKEVCFACV----DKEEF 1265 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHh----chhhh
Confidence 34568999999999999999999999999999999999999999999887533 34555555444 34555
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHH
Q 001314 844 GEAAKIALD---YCGDVTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 844 ~eAa~i~l~---ylgD~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
.-|-.+=+. ++.+.++-|+.|-.-+.|+|-+.|.+
T Consensus 1266 rlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1266 RLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 554332111 35788999999999999999886644
No 65
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.047 Score=65.15 Aligned_cols=136 Identities=23% Similarity=0.343 Sum_probs=91.4
Q ss_pred cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 50 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
..|..+.|-.+|+.||+++.+....+|.+...+--. -| ..|..+-+ ..+.|||.+|. |+|.| ...+.+|++.
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---sQ-~PF~kskG~vq~v~FHPs~p~-lfVaT-q~~vRiYdL~ 595 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---SQ-SPFRKSKGLVQRVKFHPSKPY-LFVAT-QRSVRIYDLS 595 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEeccccc---cc-CchhhcCCceeEEEecCCCce-EEEEe-ccceEEEehh
Confidence 359999999999999999976666788887776543 23 45554444 45899999998 77745 5689999987
Q ss_pred Eeee-------ecCCcEEEEEe-CCeEEeccCCCCCCCCcccccccccCC-----------ceeEEEEecCCCCceEEEE
Q 001314 128 WTTA-------VMENSTALVID-GSKILVTPLSLSLMPPPMYLFSLKFPT-----------AVTEMAFYSKSSKNCLAAI 188 (1102)
Q Consensus 128 w~~~-------~~d~~~vaVID-G~~l~lTp~r~a~VPPPM~~~~l~~~~-----------~i~~vaf~~~~~~~~~a~v 188 (1102)
-..- .---+..+|-+ |++|.+-.+... ||.+.+.+.+ .+..|||.+.- +-||..
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-----~~WfDldlsskPyk~lr~H~~avr~Va~H~ry--PLfas~ 668 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-----MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY--PLFASG 668 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-----eEEEEcccCcchhHHhhhhhhhhhhhhhcccc--ceeeee
Confidence 2111 00112334433 777777766553 7777777764 36688885532 455665
Q ss_pred EeCCceEEEe
Q 001314 189 LSDGCLCVVD 198 (1102)
Q Consensus 189 l~~~~l~l~~ 198 (1102)
..|+++.+|.
T Consensus 669 sdDgtv~Vfh 678 (733)
T KOG0650|consen 669 SDDGTVIVFH 678 (733)
T ss_pred cCCCcEEEEe
Confidence 5668888775
No 66
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.79 Score=55.30 Aligned_cols=189 Identities=21% Similarity=0.320 Sum_probs=113.2
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecC-CcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN-GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
++|. ++|.+|..- ...|-.+.-. |----.+++- +..|..+.|+.||+.|||... ...||||+..+
T Consensus 183 ldWs-s~n~laVal-------g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~ 248 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-------GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKE 248 (484)
T ss_pred hhcc-cCCeEEEEe-------cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeec---CCeEEEEehhh
Confidence 6788 777777753 2334333211 1101111111 347999999999999999973 56899999887
Q ss_pred ceEEEEEEEEecc-CCC-c-eEEecCCCCceEEEEeeCCcEEEEEEE--------------------Eeee------ecC
Q 001314 84 NHWYLKYEIRYLR-RDG-I-RFMWHPTKPLQLICWTLDGQITTYNFI--------------------WTTA------VME 134 (1102)
Q Consensus 84 YHWYLKqei~~~~-~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~--------------------w~~~------~~d 134 (1102)
.. +.-.+.. ... + ++.|. ...+..|...|.+..++.. |..+ +..
T Consensus 249 ~k----~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 249 QK----KTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred cc----ccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 65 2112222 122 3 58998 4557777777888887776 3333 225
Q ss_pred CcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEE--EeCCceEEEecCCCCccccccCCc
Q 001314 135 NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI--LSDGCLCVVDLPAPDMLEDLEGTE 212 (1102)
Q Consensus 135 ~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~v--l~~~~l~l~~~~~~~~~~~l~~~~ 212 (1102)
++.+.|=|+ + =|.|+..+. +..+.|..++|+|... +.+|.= ..|++|.||+.........
T Consensus 322 DN~~~Iwd~--------~---~~~p~~~~~-~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~----- 383 (484)
T KOG0305|consen 322 DNVVFIWDG--------L---SPEPKFTFT-EHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDS----- 383 (484)
T ss_pred ccceEeccC--------C---CccccEEEe-ccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecc-----
Confidence 567777777 1 256665554 5667899999999654 333322 5678889988653221110
Q ss_pred eeeeeeccccccCceEEEEEecCc-eEEE
Q 001314 213 FVVEACISETAFGSVIHLIWLGSH-LLLS 240 (1102)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~w~~~~-~ll~ 240 (1102)
-..-+.+..+.|.... +|+.
T Consensus 384 --------vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 384 --------VDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred --------cccCCceeeEEEcCCCCEEEE
Confidence 0112357888997655 4443
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.33 E-value=0.042 Score=63.85 Aligned_cols=105 Identities=15% Similarity=0.069 Sum_probs=71.7
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 85 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH 85 (1102)
.=.|.|++||..++ ..+.-++--+-|+--+.|.+++ .|.++.|++||..|-+.. ....|..|..+-.|
T Consensus 310 eVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG----~v~~~~fsSdsk~l~~~~---~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEG----VVSDFTFSSDSKELLASG---GTGEVYVWNLRQNS 377 (514)
T ss_pred EecCCCCeEEEccc-----CceEEeehhhhhhhhheeeecc----EEeeEEEecCCcEEEEEc---CCceEEEEecCCcc
Confidence 34577888888653 3466666777778888899987 899999999999887764 24468888887764
Q ss_pred EEEEEEEEeccCCC---ceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 86 WYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 86 WYLKqei~~~~~~~---~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
-.-+|-...+ .+++=+....+ |++|+..|-+.+|+..
T Consensus 378 ----~~~rf~D~G~v~gts~~~S~ng~y-lA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 378 ----CLHRFVDDGSVHGTSLCISLNGSY-LATGSDSGIVNIYDGN 417 (514)
T ss_pred ----eEEEEeecCccceeeeeecCCCce-EEeccCcceEEEeccc
Confidence 2222322222 34555554444 8888888877777754
No 68
>PLN03077 Protein ECB2; Provisional
Probab=96.29 E-value=1.4 Score=57.56 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=81.4
Q ss_pred hhcHHHHHHHHHHcCC-------CcHHHHHHHHHHHhcchHHHHhccC-----CcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 721 LQRFENALKHIVSMGD-------SYHADCLNLMKKYAQLFPLGLKLIT-----DPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 721 LkryekAl~hl~~~g~-------~~~deAie~~~~~~~Ly~~AL~L~~-----d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
.|++++|++.|.++.. .-+.-.+....+. +.++.|.+++. +......++...-+-+...+++++|..
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665311 1133344444454 55666666551 111112344444455555666777766
Q ss_pred HHHHcCC-----HHHHHHHHHHcCCHHHHHHHHhhcC--CChHHH--H-------------------------------H
Q 001314 789 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGLLK--LGKDEV--A-------------------------------K 828 (1102)
Q Consensus 789 ~Y~~ag~-----~ekAl~~y~~ag~W~~al~lA~~l~--~~~~el--~-------------------------------~ 828 (1102)
+|.+..+ |.--+..|...|++.+|+.+-+++- ..++.. . .
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 6665543 4445555666666666655443321 111110 0 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCC---HHHHHHHHHHhcCHHHHHHHHHh
Q 001314 829 LAQELCEELQALGKPGEAAKIALDYCGD---VTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa~i~l~ylgD---~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
++..+.+.+.+.|+.++|-.+|.+.-.| +..-|..|++.+++++|+.+-.+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233445556666777776666443112 34567778888888888876653
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.26 E-value=0.19 Score=63.65 Aligned_cols=15 Identities=7% Similarity=-0.155 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHHHh
Q 001314 624 PALEEALERIKIIRE 638 (1102)
Q Consensus 624 p~le~aL~~i~~l~~ 638 (1102)
.+.++|+.++..+..
T Consensus 56 g~~~~A~~l~~~~l~ 70 (656)
T PRK15174 56 DETDVGLTLLSDRVL 70 (656)
T ss_pred CCcchhHHHhHHHHH
Confidence 379999998876653
No 70
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.2 Score=60.59 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=99.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
.++|.|+|.+|++.. .+..|-.|...--..--.++.+. ...|..+.+|++|+.++-.- ....|.+|++.+
T Consensus 208 ~~~fs~d~~~l~s~s------~D~tiriwd~~~~~~~~~~l~gH-~~~v~~~~f~p~g~~i~Sgs---~D~tvriWd~~~ 277 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGS------DDKTLRIWDLKDDGRNLKTLKGH-STYVTSVAFSPDGNLLVSGS---DDGTVRIWDVRT 277 (456)
T ss_pred eeEECCCCcEEEEec------CCceEEEeeccCCCeEEEEecCC-CCceEEEEecCCCCEEEEec---CCCcEEEEeccC
Confidence 589999999999976 46789999984443444555543 33589999999998777653 345799999999
Q ss_pred ceEEEEEEEEecc-CCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeE-EeccCCCCCCCCccc
Q 001314 84 NHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI-LVTPLSLSLMPPPMY 161 (1102)
Q Consensus 84 YHWYLKqei~~~~-~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l-~lTp~r~a~VPPPM~ 161 (1102)
.. ....+.. .++++..+.+.....|+.+..+|.+.+ |++.. |... +-+.-..
T Consensus 278 ~~----~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v----wd~~~----------~~~~~~~~~~~~-------- 331 (456)
T KOG0266|consen 278 GE----CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV----WDLET----------GSKLCLKLLSGA-------- 331 (456)
T ss_pred Ce----EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE----EECCC----------CceeeeecccCC--------
Confidence 44 2222222 334554444444444666655666665 43321 1111 1110000
Q ss_pred ccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCcc
Q 001314 162 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 205 (1102)
Q Consensus 162 ~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~ 205 (1102)
+.+.++..|.|++++. .+.+...++.+.+|++......
T Consensus 332 ----~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 332 ----ENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred ----CCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcce
Confidence 1111578899988654 5666678889999998754433
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.11 E-value=1.7 Score=47.83 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=61.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCc-ceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGL-rhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
.++|.|.|..++.+.. ....|.+|+-.+. ....+... ..+..+.|++|+..|++.. .....|.+|...
T Consensus 35 ~l~~~~dg~~l~~~~~-----~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~g~~l~~~~--~~~~~l~~~d~~ 103 (300)
T TIGR03866 35 GITLSKDGKLLYVCAS-----DSDTIQVIDLATGEVIGTLPSG----PDPELFALHPNGKILYIAN--EDDNLVTVIDIE 103 (300)
T ss_pred ceEECCCCCEEEEEEC-----CCCeEEEEECCCCcEEEeccCC----CCccEEEECCCCCEEEEEc--CCCCeEEEEECC
Confidence 5899999997755442 2457888985543 22333221 2356789999999887764 334589999998
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCC
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 119 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g 119 (1102)
+.. +...+..+ .....+.|+|...+ +++...++
T Consensus 104 ~~~--~~~~~~~~-~~~~~~~~~~dg~~-l~~~~~~~ 136 (300)
T TIGR03866 104 TRK--VLAEIPVG-VEPEGMAVSPDGKI-VVNTSETT 136 (300)
T ss_pred CCe--EEeEeeCC-CCcceEEECCCCCE-EEEEecCC
Confidence 743 11222211 11245889887765 55534333
No 72
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.11 E-value=0.52 Score=56.34 Aligned_cols=205 Identities=18% Similarity=0.253 Sum_probs=116.5
Q ss_pred eeeccCCCeEEEEeecc----CCCCCC-eEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 5 LEWMPSGANIAAVYDRK----SENKCP-SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~----~~~~~~-~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
++=.|.|-.||...... ....++ .|-+|--+|-..+.+..+. ..+..|.|+.+-+++.| . +...|.++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~---~~iv~~~wt~~e~LvvV-~---~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS---GRIVGMGWTDDEELVVV-Q---SDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC---CCEEEEEECCCCeEEEE-E---cCCEEEEE
Confidence 45567788888875320 111234 4999999999999988874 48999999997666644 3 24567777
Q ss_pred Ec-ccceEEEEEEEEeccC-CC-ceEEecCCCCceEEEEeeCCcEEEEE-EEEe--------------------ee----
Q 001314 80 FF-SNNHWYLKYEIRYLRR-DG-IRFMWHPTKPLQLICWTLDGQITTYN-FIWT--------------------TA---- 131 (1102)
Q Consensus 80 t~-~NYHWYLKqei~~~~~-~~-~~~~W~~e~pl~L~i~t~~g~~~~~~-~~w~--------------------~~---- 131 (1102)
.. |+++..+-+++.-..- +. +.-.|..... +++.|.+++++..+ +... ..
T Consensus 107 ~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 107 DLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred eCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccce
Confidence 65 4544444444432111 11 1112444333 45557666654332 2211 00
Q ss_pred -ec-CC-cEEEEEeCCeEE-eccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCcccc
Q 001314 132 -VM-EN-STALVIDGSKIL-VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 207 (1102)
Q Consensus 132 -~~-d~-~~vaVIDG~~l~-lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~ 207 (1102)
.+ +. -.|.+..|..+. +...... + +....++..+++|+++. .+|.+..+|.+.+...+-.....+
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~--~-------i~~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFK--Q-------IDSDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEccccc--c-------ccCCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEE
Confidence 00 11 134456677766 4332221 1 44456899999998764 578778888888876532222211
Q ss_pred ccCCceeeeeeccccccCceEEEEEecCceEEE
Q 001314 208 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 240 (1102)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~ 240 (1102)
+. -.....+.++.|-|++.++.
T Consensus 254 -----~~------~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 254 -----FD------TDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred -----ee------cCcCCCCcEEEEECCCcEEE
Confidence 11 01234678999999886544
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.08 E-value=0.5 Score=63.90 Aligned_cols=158 Identities=12% Similarity=-0.020 Sum_probs=105.6
Q ss_pred hhHHHhhhcHHHHHHHHHHc---CCC----cHHHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccC
Q 001314 715 YTIDLRLQRFENALKHIVSM---GDS----YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 782 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~---g~~----~~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~ 782 (1102)
..+....|+|++|+..|.++ .++ ++..|.-| ... +.|++|+..+ .+|.. ......+|.++...++
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~-~~~-G~~~~A~~~l~~al~~~P~~-~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQA-GQRSQADALMRRLAQQKPND-PEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhCCC
Confidence 34445578999999988875 222 12334333 444 7888888876 23322 2345567888889999
Q ss_pred hHHHHHHHHHcCCH------------------HHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChH
Q 001314 783 FEDAATTYFCCSSL------------------EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 844 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~------------------ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~ 844 (1102)
+++|...+.++-.- -...+++...|+.++|..+.+..+.+. .+...+|..+.+.|++.
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~----~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST----RIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc----hHHHHHHHHHHHcCCHH
Confidence 99999888775321 122356778889999988887554332 35567888999999999
Q ss_pred HHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 001314 845 EAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 845 eAa~i~l~ylg----D~e---~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
+|...|.+-+. +++ ....+|...+++++|+.....
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99988865332 222 345677888899998876553
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.00 E-value=3.3 Score=45.58 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=62.0
Q ss_pred CCeEEEEeeccCCCCCCeEEEEecC-CcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEE
Q 001314 11 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 89 (1102)
Q Consensus 11 GnlIA~~qr~~~~~~~~~VvFFERN-GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLK 89 (1102)
|+++++.+ .+..|.+|+.. |-....|... ..+..+.|++|+..|.+.. ...+.|.+|...+... .
T Consensus 1 ~~~~~s~~------~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~--~ 66 (300)
T TIGR03866 1 EKAYVSNE------KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCA--SDSDTIQVIDLATGEV--I 66 (300)
T ss_pred CcEEEEec------CCCEEEEEECCCCceEEEEECC----CCCCceEECCCCCEEEEEE--CCCCeEEEEECCCCcE--E
Confidence 46677765 34689999965 4333444432 2367899999999876654 3456899999988653 2
Q ss_pred EEEEeccCCCceEEecCCCCceEEEEee-CCcEEEEEE
Q 001314 90 YEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNF 126 (1102)
Q Consensus 90 qei~~~~~~~~~~~W~~e~pl~L~i~t~-~g~~~~~~~ 126 (1102)
.++..+ .....+.|+|.... |++.+. +|.+..++.
T Consensus 67 ~~~~~~-~~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 67 GTLPSG-PDPELFALHPNGKI-LYIANEDDNLVTVIDI 102 (300)
T ss_pred EeccCC-CCccEEEECCCCCE-EEEEcCCCCeEEEEEC
Confidence 333322 12245789987664 555333 456666554
No 75
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=95.96 E-value=0.22 Score=57.90 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=111.4
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEec--CCccee---e----eecCCccccceeeeeecCCCCeEEEEEeeCCCCeE
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS---S----FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFER--NGLrhg---e----F~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~v 76 (1102)
..+|+-..|.++. . ...+|-+|.+ ..=+.- + ..|.+... .-.+|+||......-+-. .+...|
T Consensus 131 RymPQnp~iVAt~-t----~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~--~~d~~i 202 (422)
T KOG0264|consen 131 RYMPQNPNIVATK-T----SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSG--SDDHTI 202 (422)
T ss_pred hhCCCCCcEEEec-C----CCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeec--cCCCcE
Confidence 3568654444433 1 2456666654 333332 1 23333222 377899999877666543 456689
Q ss_pred EEEEcccceEEEEE-------EEEeccCCCce-EEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEe
Q 001314 77 KICFFSNNHWYLKY-------EIRYLRRDGIR-FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 148 (1102)
Q Consensus 77 qLWt~~NYHWYLKq-------ei~~~~~~~~~-~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~l 148 (1102)
.+|..++|- +. .+.-+..+.+. +.||+-... =..+|-|+..|.|
T Consensus 203 ~lwdi~~~~---~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-------------------------lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 203 CLWDINAES---KEDKVVDPKTIFSGHEDVVEDVAWHPLHED-------------------------LFGSVGDDGKLMI 254 (422)
T ss_pred EEEeccccc---cCCccccceEEeecCCcceehhhccccchh-------------------------hheeecCCCeEEE
Confidence 999999887 21 00000011111 344443222 2445778888888
Q ss_pred ccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceE
Q 001314 149 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVI 228 (1102)
Q Consensus 149 Tp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 228 (1102)
=..|. + +-++....-.-+..|++|+|.+.+ .+.+|..-+|+++.||.+-....+. . .....-+.+.
T Consensus 255 wD~R~-~-~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~l------h-----~~e~H~dev~ 320 (422)
T KOG0264|consen 255 WDTRS-N-TSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPL------H-----TFEGHEDEVF 320 (422)
T ss_pred EEcCC-C-CCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCc------e-----eccCCCcceE
Confidence 88888 5 788888888889999999999976 4677877889999999975432210 1 0122334677
Q ss_pred EEEEe-cCceEEEE
Q 001314 229 HLIWL-GSHLLLSV 241 (1102)
Q Consensus 229 ~~~w~-~~~~ll~~ 241 (1102)
++.|- ....+++.
T Consensus 321 ~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 321 QVEWSPHNETVLAS 334 (422)
T ss_pred EEEeCCCCCceeEe
Confidence 78885 33355553
No 76
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.92 E-value=0.33 Score=54.84 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhh----cCC---ChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 001314 798 KAMKAYRASGNWSGVLTVAGL----LKL---GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 870 (1102)
Q Consensus 798 kAl~~y~~ag~W~~al~lA~~----l~~---~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W 870 (1102)
+|++.|...|+++.+-.+... +.. +.++-.+.+..-++.+...+....|..++.. +..++++.++|
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~-------~A~l~~~l~~y 171 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK-------AADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-------HHHHHHHTT-H
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH-------HHHHHHHhCCH
Confidence 445555666666555333222 211 2233344555666666666665555555432 44556666666
Q ss_pred HHHHHHH
Q 001314 871 EEALRVA 877 (1102)
Q Consensus 871 ~eA~rLa 877 (1102)
++|+.+-
T Consensus 172 ~~A~~~~ 178 (282)
T PF14938_consen 172 EEAIEIY 178 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.91 E-value=0.17 Score=53.00 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHc
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+...+|..+...+++++|..+|.++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445566666666666666666554
No 78
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=95.86 E-value=0.064 Score=60.80 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=77.7
Q ss_pred HHHHcCCCcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccCh------HHHHHHHHHcCCHHHHHH
Q 001314 730 HIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF------EDAATTYFCCSSLEKAMK 801 (1102)
Q Consensus 730 hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~------eeAa~~Y~~ag~~ekAl~ 801 (1102)
.+.-.|+ .++|+++..+. ++|..||=|. .+++.++++...|.+.-...+.. --...+-.-+|+.+.+++
T Consensus 4 ~~Ll~G~--~~~Av~~al~~-~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~ 80 (284)
T PF12931_consen 4 QLLLVGN--REEAVELALDN-GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVD 80 (284)
T ss_dssp HHHHTT---HHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHH
T ss_pred HHHhCCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHH
Confidence 3445677 89999999998 9999999988 79999999999998877543332 234445567899999988
Q ss_pred HHHHc------------CCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 001314 802 AYRAS------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 855 (1102)
Q Consensus 802 ~y~~a------------g~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylg 855 (1102)
..... ++|++.+.+.-... ++++ ......+++.|.+.|+..+|--+|+- +|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~-~~~~-~~~l~~LGd~L~~~g~~~aA~iCYll-ag 143 (284)
T PF12931_consen 81 ELVPNSAAPPLEGEWDLDNWRETLAIILSNR-TPED-SQALCALGDRLWQRGRVEAAHICYLL-AG 143 (284)
T ss_dssp HHHH-----HHHHHHHHHSHHHHHHHHHHTS----S-S-TT--HHHHHHHTT-HHHHHHHHHH-TT
T ss_pred HhccccccccccccchhcCHHHHHHHHHhCC-Cccc-HHHHHHHHHHHHhCCCcchhHHHHhH-cC
Confidence 76543 47999988765432 2222 24566699999999998777777764 54
No 79
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.82 E-value=0.17 Score=62.06 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=108.1
Q ss_pred ceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEe-ccCCCceEEecCCCCceEEEEe
Q 001314 38 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWT 116 (1102)
Q Consensus 38 rhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~-~~~~~~~~~W~~e~pl~L~i~t 116 (1102)
|-+.++++++ ...|..|+-++|+.+||-- ..+.|.+|.+..-. +|+. +....++.++-|-.-+ +.+|+
T Consensus 363 ~~~~i~~~GH-R~dVRsl~vS~d~~~~~Sg----a~~SikiWn~~t~k-----ciRTi~~~y~l~~~Fvpgd~~-Iv~G~ 431 (888)
T KOG0306|consen 363 RTSNIEIGGH-RSDVRSLCVSSDSILLASG----AGESIKIWNRDTLK-----CIRTITCGYILASKFVPGDRY-IVLGT 431 (888)
T ss_pred ccceeeeccc-hhheeEEEeecCceeeeec----CCCcEEEEEccCcc-----eeEEeccccEEEEEecCCCce-EEEec
Confidence 3444555542 2359999999999999853 37899999887643 5543 2222245566665555 88899
Q ss_pred eCCcEEEEEEE---------------Eeeeec--CCcEEEEEeCCeEEeccCCCCCCCCcccc---------cccccCCc
Q 001314 117 LDGQITTYNFI---------------WTTAVM--ENSTALVIDGSKILVTPLSLSLMPPPMYL---------FSLKFPTA 170 (1102)
Q Consensus 117 ~~g~~~~~~~~---------------w~~~~~--d~~~vaVIDG~~l~lTp~r~a~VPPPM~~---------~~l~~~~~ 170 (1102)
.+|.+.+|+.. |+++.+ ..+.|.+---++|++=.|...+= -|=.. +.++++..
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccceeeeeccceEEecccc
Confidence 99999999987 888733 33566666667777777766543 33333 77899999
Q ss_pred eeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 171 VTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 171 i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
|-+|++||+.. .+|+-|-|+++.+|-+++.
T Consensus 511 vL~v~~Spdgk--~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 511 VLCVSVSPDGK--LLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred EEEEEEcCCCc--EEEEEeccCeEEEEEecce
Confidence 99999999764 6788899999999998764
No 80
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.82 E-value=1.1 Score=55.28 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=66.5
Q ss_pred ccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEE--
Q 001314 49 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-- 126 (1102)
Q Consensus 49 ~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~-- 126 (1102)
+.+|..++||+.||-||+-. .+-..+-+|.--.--+-|||+=+++.- .++..+|...+ ++.|..+|.+-++|-
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~--~klgQLlVweWqsEsYVlKQQgH~~~i--~~l~YSpDgq~-iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGC--SKLGQLLVWEWQSESYVLKQQGHSDRI--TSLAYSPDGQL-IATGAEDGKVKVWNTQS 381 (893)
T ss_pred cceeeEEEecccCCEEEEcC--CccceEEEEEeeccceeeeccccccce--eeEEECCCCcE-EEeccCCCcEEEEeccC
Confidence 45799999999999999976 344467777655555678998665322 46888887766 888888898887663
Q ss_pred --EEeeeecCCc-EEEE---EeCCeEEeccCCC
Q 001314 127 --IWTTAVMENS-TALV---IDGSKILVTPLSL 153 (1102)
Q Consensus 127 --~w~~~~~d~~-~vaV---IDG~~l~lTp~r~ 153 (1102)
++.|..-..+ +.+| ++|+-|+-..|..
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 3444322233 2233 6676666555433
No 81
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.78 E-value=0.15 Score=57.56 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
.....+|..+...|+|.+|..+|
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444444444444444444
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.71 E-value=0.93 Score=49.85 Aligned_cols=206 Identities=14% Similarity=0.180 Sum_probs=120.4
Q ss_pred ceeecc-CCCeEEEEeeccCCCCCCeEEEE-ecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMP-SGANIAAVYDRKSENKCPSIVFY-ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrP-sGnlIA~~qr~~~~~~~~~VvFF-ERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.|+|-| +-.++|++. .+..|.++ -|-|-.--+...++ .-+.+.|++|++-.|+.- +.|.|-+...
T Consensus 69 ql~w~~~~~d~~atas------~dk~ir~wd~r~~k~~~~i~~~~----eni~i~wsp~g~~~~~~~---kdD~it~id~ 135 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATAS------GDKTIRIWDIRSGKCTARIETKG----ENINITWSPDGEYIAVGN---KDDRITFIDA 135 (313)
T ss_pred hheeCCCCCcceEEec------CCceEEEEEeccCcEEEEeeccC----cceEEEEcCCCCEEEEec---CcccEEEEEe
Confidence 467777 677888886 23345444 46665555555543 466789999999999974 5678999999
Q ss_pred ccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeC-CcEEEEEEE-----EeeeecCCcEEEE-Ee--CCeEE-----
Q 001314 82 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD-GQITTYNFI-----WTTAVMENSTALV-ID--GSKIL----- 147 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~-g~~~~~~~~-----w~~~~~d~~~vaV-ID--G~~l~----- 147 (1102)
-+||= +.+-++.- ...-+.|+. +..|++.|++ |.+.+..|- .++.++..+.+++ +| |..+-
T Consensus 136 r~~~~--~~~~~~~~-e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 136 RTYKI--VNEEQFKF-EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred cccce--eehhcccc-eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc
Confidence 99982 22222211 113478984 4445555665 888888775 2222333333333 22 32221
Q ss_pred -eccCCCCCCCCccccccc-ccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccC
Q 001314 148 -VTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 225 (1102)
Q Consensus 148 -lTp~r~a~VPPPM~~~~l-~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 225 (1102)
+++|=. +---+|-+.+ .++-||..++||.++. ++|--..|..+-|...++.+..-++. --+
T Consensus 211 AlvSLWD--~~ELiC~R~isRldwpVRTlSFS~dg~--~lASaSEDh~IDIA~vetGd~~~eI~-------------~~~ 273 (313)
T KOG1407|consen 211 ALVSLWD--VDELICERCISRLDWPVRTLSFSHDGR--MLASASEDHFIDIAEVETGDRVWEIP-------------CEG 273 (313)
T ss_pred ceeeccC--hhHhhhheeeccccCceEEEEeccCcc--eeeccCccceEEeEecccCCeEEEee-------------ccC
Confidence 222222 1223344444 4688999999998764 55555666667777665544332111 112
Q ss_pred ceEEEEEecCceEEEEEec
Q 001314 226 SVIHLIWLGSHLLLSVSHH 244 (1102)
Q Consensus 226 ~~~~~~w~~~~~ll~~~~~ 244 (1102)
..-..+|-....||+...+
T Consensus 274 ~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred CceeEEecCCCceeeEEec
Confidence 2345689888888886544
No 83
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.69 E-value=0.14 Score=62.35 Aligned_cols=165 Identities=20% Similarity=0.218 Sum_probs=95.1
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+++=.|+||+||++++-... +...|.+|++---..-+ .|++ ....|+.|+||+|+..|+-+.+ .-.+-||+..+
T Consensus 530 ~l~~s~~gnliASaCKS~~~-ehAvI~lw~t~~W~~~~-~L~~-HsLTVT~l~FSpdg~~LLsvsR---DRt~sl~~~~~ 603 (764)
T KOG1063|consen 530 ALAISPTGNLIASACKSSLK-EHAVIRLWNTANWLQVQ-ELEG-HSLTVTRLAFSPDGRYLLSVSR---DRTVSLYEVQE 603 (764)
T ss_pred EEEecCCCCEEeehhhhCCc-cceEEEEEeccchhhhh-eecc-cceEEEEEEECCCCcEEEEeec---CceEEeeeeec
Confidence 46778999999999976422 34567788874433222 4554 2446999999999999998863 22588887766
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEE---EeCCeEEeccCCCCCCCCcc
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV---IDGSKILVTPLSLSLMPPPM 160 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaV---IDG~~l~lTp~r~a~VPPPM 160 (1102)
-- +-|.+|.. .++.+=+||..+..-.. +-|.| .|-+..|-| -|+. ..-||-
T Consensus 604 ~~---~~e~~fa~----------~k~HtRIIWdcsW~pde--~~FaT-aSRDK~VkVW~~~~~~--------d~~i~~-- 657 (764)
T KOG1063|consen 604 DI---KDEFRFAC----------LKAHTRIIWDCSWSPDE--KYFAT-ASRDKKVKVWEEPDLR--------DKYISR-- 657 (764)
T ss_pred cc---chhhhhcc----------ccccceEEEEcccCccc--ceeEE-ecCCceEEEEeccCch--------hhhhhh--
Confidence 44 55555432 22322222222110000 00111 123334433 2331 011111
Q ss_pred cccccccCCceeEEEEecCC--CC-ceEEEEEeCCceEEEecCC
Q 001314 161 YLFSLKFPTAVTEMAFYSKS--SK-NCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 161 ~~~~l~~~~~i~~vaf~~~~--~~-~~~a~vl~~~~l~l~~~~~ 201 (1102)
+..++++.+|..|++.+.- ++ ..+++=+.+|.|.+|+++.
T Consensus 658 -~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 658 -FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred -hchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 1456788899999988742 22 3567779999999999864
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.66 E-value=0.6 Score=56.92 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=35.4
Q ss_pred CCChhhhHHHHHHHhhhcc-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001314 996 PGSPGEEMALVDHLKGMSL-TVGAKQELKSLVVFLVMLGEVDTARKLQDTGET 1047 (1102)
Q Consensus 996 ~Gs~~Eee~Lv~sl~~l~~-~~~~~~ev~~Ll~~Lv~~~~~e~A~~lQ~~~~~ 1047 (1102)
.+-.|+|-.=|. +...+ -.++-.....|....-+.|.+|.|.+++..+..
T Consensus 428 a~~l~~~~~~i~--~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIM--KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHH--HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 455666654333 22222 245778889999999999999999999988766
No 85
>PTZ00421 coronin; Provisional
Probab=95.40 E-value=0.59 Score=57.15 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=65.9
Q ss_pred ceeeccCC-CeEEEEeeccCCCCCCeEEEEecC-CcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSG-ANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsG-nlIA~~qr~~~~~~~~~VvFFERN-GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++|.|++ +++|+.. .+..|.+|+-+ |-.... +... ...|..++||+|+.+||... ....|.+|+.
T Consensus 130 ~l~f~P~~~~iLaSgs------~DgtVrIWDl~tg~~~~~--l~~h-~~~V~sla~spdG~lLatgs---~Dg~IrIwD~ 197 (493)
T PTZ00421 130 IVSFHPSAMNVLASAG------ADMVVNVWDVERGKAVEV--IKCH-SDQITSLEWNLDGSLLCTTS---KDKKLNIIDP 197 (493)
T ss_pred EEEeCcCCCCEEEEEe------CCCEEEEEECCCCeEEEE--EcCC-CCceEEEEEECCCCEEEEec---CCCEEEEEEC
Confidence 58999975 7888865 35689999854 432222 2321 23599999999999999764 2447999998
Q ss_pred ccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEee---CCcEEEEE
Q 001314 82 SNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTL---DGQITTYN 125 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~---~g~~~~~~ 125 (1102)
.+-. ..+++....... ..+.|++.....+.++.+ +|++.+++
T Consensus 198 rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 198 RDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 7643 122332211111 247898876653444322 35555543
No 86
>PTZ00420 coronin; Provisional
Probab=95.34 E-value=8.5 Score=47.97 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=67.7
Q ss_pred cceeeeeecCC-CCeEEEEEeeCCCCeEEEEEcccceEEEEE---E-EEecc-CCCc-eEEecCCCCceEEEEeeCCcEE
Q 001314 50 STVELLKWNCM-SDLLAAVVRFEEYDSVKICFFSNNHWYLKY---E-IRYLR-RDGI-RFMWHPTKPLQLICWTLDGQIT 122 (1102)
Q Consensus 50 ~~v~~L~Wn~D-S~iLAv~~~~~~~~~vqLWt~~NYHWYLKq---e-i~~~~-~~~~-~~~W~~e~pl~L~i~t~~g~~~ 122 (1102)
..|..++|+++ +++||..- ....|.+|...+-.=..+. . ..+.. ...+ ++.|||.....|+.+..+|.+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGS---EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 36999999997 88988764 2447999998642100000 0 01221 2234 5899998766444444455554
Q ss_pred EEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 123 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 123 ~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
+ |++.. |..+ .++..+..|.+++|++++. .+++-..++++.+|....
T Consensus 152 I----WDl~t----------g~~~----------------~~i~~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 152 I----WDIEN----------EKRA----------------FQINMPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred E----EECCC----------CcEE----------------EEEecCCcEEEEEECCCCC--EEEEEecCCEEEEEECCC
Confidence 3 44321 1111 1122234588999988654 455545588999998754
No 87
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=1.3 Score=55.26 Aligned_cols=208 Identities=19% Similarity=0.290 Sum_probs=117.0
Q ss_pred HHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcC--Chhhhc--hhHHHhhhcHHHHHHHHH
Q 001314 657 EALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESM--PPLLMR--YTIDLRLQRFENALKHIV 732 (1102)
Q Consensus 657 ~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~l--e~~~rr--~~Id~~LkryekAl~hl~ 732 (1102)
-.|-+.++ +.-.=|...+..|+-.|--.-.+-+---|+ +++- +...++ ++..-+-++|++|+++|.
T Consensus 460 mvLve~L~--~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q--------~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~yl 529 (846)
T KOG2066|consen 460 MVLVEFLA--SDVKGFLELIKEWPGHLYSVLTIISATEPQ--------IKQNSESTALLEVLAHLYLYDNKYEKALPIYL 529 (846)
T ss_pred HHHHHHHH--HHHHHHHHHHHhCChhhhhhhHHHhhcchH--------HHhhccchhHHHHHHHHHHHccChHHHHHHHH
Confidence 33444333 444456677888887654222222222221 2222 112222 344445689999999999
Q ss_pred HcCCCcHHHHHHHHHHHhcchHHHHhcc-----CCcHh----------------H-------HHHHHHHHHHHhccc---
Q 001314 733 SMGDSYHADCLNLMKKYAQLFPLGLKLI-----TDPAK----------------M-------EQVLEAWADHLSDVK--- 781 (1102)
Q Consensus 733 ~~g~~~~deAie~~~~~~~Ly~~AL~L~-----~d~~~----------------~-------~~i~~~yAd~L~~~~--- 781 (1102)
++-+ .++.+++.+| .||+.+.+.. -+.++ + ..+...|-.+|..+.
T Consensus 530 klk~---~~vf~lI~k~-nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~rd~~~ 605 (846)
T KOG2066|consen 530 KLQD---KDVFDLIKKH-NLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFKRDHFM 605 (846)
T ss_pred hccC---hHHHHHHHHH-hhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhhcCccc
Confidence 9865 7899999999 9999886643 11111 0 111222222222221
Q ss_pred --Ch-HHHHHHHHHcCCHHHHHHHHHHcC--CHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 001314 782 --CF-EDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 856 (1102)
Q Consensus 782 --~~-eeAa~~Y~~ag~~ekAl~~y~~ag--~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD 856 (1102)
+| +.+...|..- +-.+-+--.++.. +.+.|+.++.+.+ .+.++.--|-..|...+|-.+..+-++|
T Consensus 606 ~~~y~dk~I~LYAEy-Drk~LLPFLr~s~~Y~lekA~eiC~q~~--------~~~E~VYlLgrmGn~k~AL~lII~el~d 676 (846)
T KOG2066|consen 606 GSEYHDKQIELYAEY-DRKKLLPFLRKSQNYNLEKALEICSQKN--------FYEELVYLLGRMGNAKEALKLIINELRD 676 (846)
T ss_pred cchhhhHHHHHHHHH-hHhhhhHHHHhcCCCCHHHHHHHHHhhC--------cHHHHHHHHHhhcchHHHHHHHHHHhhC
Confidence 11 1111222111 0112222222222 4788888887654 4555555667789999999999888999
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHhcCChhhHHHH
Q 001314 857 VTNGISLLIDAR---DWEEALRVAFMHRREDLITKV 889 (1102)
Q Consensus 857 ~e~AI~~y~~~~---~W~eA~rLa~~h~~~dL~etv 889 (1102)
+++||+.+.+.+ .|++.+-....+ |+.+.+|
T Consensus 677 ie~AIefvKeq~D~eLWe~LI~~~ldk--Pe~~~~l 710 (846)
T KOG2066|consen 677 IEKAIEFVKEQDDSELWEDLINYSLDK--PEFIKAL 710 (846)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcC--cHHHHHH
Confidence 999999887654 588887655544 5555443
No 88
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.31 E-value=0.22 Score=58.96 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=87.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+++|.|..++||+.+ ++..--.|+--|--- |+- .+.+..|+.++||+| +..|||-
T Consensus 191 ~~~W~~~s~lI~sgG------ED~kfKvWD~~G~~L--f~S-~~~ey~ITSva~npd-~~~~v~S--------------- 245 (737)
T KOG1524|consen 191 SLSWSTQSNIIASGG------EDFRFKIWDAQGANL--FTS-AAEEYAITSVAFNPE-KDYLLWS--------------- 245 (737)
T ss_pred EeecCccccceeecC------CceeEEeecccCccc--ccC-Chhccceeeeeeccc-cceeeee---------------
Confidence 579999999999964 456666677665422 222 235678999999999 8888874
Q ss_pred ceEEEEEEEEeccCC-C--ceEEecCCCCceEEEEeeCCcEEEEE---EEEeeeecCCcEEEEEeCCeEEeccCCCCCCC
Q 001314 84 NHWYLKYEIRYLRRD-G--IRFMWHPTKPLQLICWTLDGQITTYN---FIWTTAVMENSTALVIDGSKILVTPLSLSLMP 157 (1102)
Q Consensus 84 YHWYLKqei~~~~~~-~--~~~~W~~e~pl~L~i~t~~g~~~~~~---~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VP 157 (1102)
|| .+++.... + ..+.|++.... +.++|+.|+++.-. ..|... +.-+.+---+.+- ..+|-
T Consensus 246 ~n-----t~R~~~p~~GSifnlsWS~DGTQ-~a~gt~~G~v~~A~~ieq~l~~~---n~~~t~~~r~~I~-----vrdV~ 311 (737)
T KOG1524|consen 246 YN-----TARFSSPRVGSIFNLSWSADGTQ-ATCGTSTGQLIVAYAIEQQLVSG---NLKATSKSRKSIT-----VRDVA 311 (737)
T ss_pred ee-----eeeecCCCccceEEEEEcCCCce-eeccccCceEEEeeeehhhhhhc---cceeEeeccceEE-----eehhh
Confidence 22 33344332 2 34899997654 99999999876322 223322 1111111111111 11233
Q ss_pred CcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 158 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 158 PPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
.-.+ .-+++|+.|...+.+.. + .++.+...+++|.-
T Consensus 312 ~~v~-d~LE~p~rv~k~sL~Y~----h-LvvaTs~qvyiys~ 347 (737)
T KOG1524|consen 312 TGVQ-DILEFPQRVVKFSLGYG----H-LVVATSLQVYIYSE 347 (737)
T ss_pred hhHH-HHhhCccceeeeeecee----E-EEEEeccEEEEEec
Confidence 3334 55788888866554332 1 33455566777764
No 89
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.30 E-value=0.57 Score=56.24 Aligned_cols=101 Identities=5% Similarity=0.020 Sum_probs=62.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|+.||.+.... .+..|..++-.|-++..++ . ....+....|++||+-|++....+....|.+|+..+
T Consensus 206 ~p~wSpDG~~lay~s~~~---g~~~i~~~dl~~g~~~~l~--~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 206 TPRFSPNRQEITYMSYAN---GRPRVYLLDLETGQRELVG--N-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred eeEECCCCCEEEEEEecC---CCCEEEEEECCCCcEEEee--c-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 478999999999876431 3578888886554443332 1 112466889999999999877544445677777765
Q ss_pred ceEEEEEEEEeccCCC--ceEEecCCCCceEEEEe
Q 001314 84 NHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWT 116 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t 116 (1102)
-.. ..+ ..... ....|+|.... |++.+
T Consensus 280 ~~~---~~L--t~~~~~~~~~~~spDG~~-i~f~s 308 (435)
T PRK05137 280 GTT---TRL--TDSPAIDTSPSYSPDGSQ-IVFES 308 (435)
T ss_pred Cce---EEc--cCCCCccCceeEcCCCCE-EEEEE
Confidence 441 122 22222 34789887544 44433
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.28 E-value=0.041 Score=61.67 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=48.4
Q ss_pred hhHHHhhhcHHHHHHHHHHc-CC-------CcHHHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHHHHHHHhcccC
Q 001314 715 YTIDLRLQRFENALKHIVSM-GD-------SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKC 782 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~-g~-------~~~deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~~~ 782 (1102)
+.+.--.|+|++|++.|.+. .. +.....-++.... +.|+.|++.| ..+.........++.+ ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccc
Confidence 44444466777777777421 11 0011112233455 6677777766 1122233444555555 46777
Q ss_pred hHHHHHHHHHc-------CCHHHHHHHHHHcCCHHHHHHHHhhcC-CC-hHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 001314 783 FEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVAGLLK-LG-KDEVAKLAQELCEELQALGKPGEAAKIALDY 853 (1102)
Q Consensus 783 ~eeAa~~Y~~a-------g~~ekAl~~y~~ag~W~~al~lA~~l~-~~-~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y 853 (1102)
+++|..+++.+ ..+..++.+|...++|+++..+...+. .. .+.-..+...+|..+.+.|++.+|.++|-+-
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777766654 234567777888888888766654421 11 0112356777888888899999998888554
Q ss_pred c----CCHH---HHHHHHHHhcCHHHHHHHHHhc
Q 001314 854 C----GDVT---NGISLLIDARDWEEALRVAFMH 880 (1102)
Q Consensus 854 l----gD~e---~AI~~y~~~~~W~eA~rLa~~h 880 (1102)
+ +|.+ .-+-++++.++.++|..+....
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 3 2222 2355677778888766555443
No 91
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.25 E-value=0.99 Score=54.22 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=61.6
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeee-ecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF-~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..+|.|.|..||.+... +.+..|.++.-+|=+.... ..++ .+....|++||+.||+.........|.+|...
T Consensus 203 ~p~wSPDG~~la~~s~~---~g~~~i~i~dl~~G~~~~l~~~~~----~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFE---SGRSALVIQTLANGAVRQVASFPR----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred eeEEcCCCCEEEEEEec---CCCcEEEEEECCCCCeEEccCCCC----CcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 57999999999976532 1356788887665332221 1222 34568999999999987643333468888876
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEe
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 116 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t 116 (1102)
.-.. ++ +...........|+|.... |++.+
T Consensus 276 tg~~--~~-lt~~~~~~~~~~wSPDG~~-I~f~s 305 (429)
T PRK03629 276 SGQI--RQ-VTDGRSNNTEPTWFPDSQN-LAYTS 305 (429)
T ss_pred CCCE--EE-ccCCCCCcCceEECCCCCE-EEEEe
Confidence 6441 22 2111111145799987654 54433
No 92
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=95.21 E-value=3.8 Score=50.67 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=89.9
Q ss_pred cceeeeeecCCCCe---EEEEEeeC-------------CCC-eEEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCce
Q 001314 50 STVELLKWNCMSDL---LAAVVRFE-------------EYD-SVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQ 111 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~i---LAv~~~~~-------------~~~-~vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~ 111 (1102)
..+..+.|.+++.+ .++..... ..+ .+.+|...|- .+-|+.+..... .++.++|.+|..
T Consensus 181 ~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~l 257 (555)
T KOG1587|consen 181 RQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNL 257 (555)
T ss_pred cceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC---CCceEEEecCCceeEEEeccCCcce
Confidence 35889999999994 22222210 111 5888988886 256666666555 568999999998
Q ss_pred EEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeC
Q 001314 112 LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD 191 (1102)
Q Consensus 112 L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~ 191 (1102)
|+.|+.+|++.. |++... .-|| |-|+|...-.-+.++..|.+..+.....|..+.+|
T Consensus 258 l~gG~y~GqV~l----WD~~~~-------------~~~~------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 258 LAGGCYNGQVVL----WDLRKG-------------SDTP------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred EEeeccCceEEE----EEccCC-------------CCCC------CcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 999998888764 655422 1122 88999999999999999998875444446777889
Q ss_pred CceEEEecCC
Q 001314 192 GCLCVVDLPA 201 (1102)
Q Consensus 192 ~~l~l~~~~~ 201 (1102)
|++..|....
T Consensus 315 G~i~~W~~~~ 324 (555)
T KOG1587|consen 315 GSICSWDTDM 324 (555)
T ss_pred CcEeeeeccc
Confidence 9999997544
No 93
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.11 E-value=0.5 Score=52.50 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=95.6
Q ss_pred ceeec--c-CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--ccccceeeeeecCCC-----CeEEEEEeeCCC
Q 001314 4 VLEWM--P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMS-----DLLAAVVRFEEY 73 (1102)
Q Consensus 4 ~LsWr--P-sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--~~~~~v~~L~Wn~DS-----~iLAv~~~~~~~ 73 (1102)
++.|. | ++-.||...-....+++..|+=+. ..-|||.-.. +....+..|.|++|+ ++||-. +
T Consensus 49 a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld---~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-----~ 120 (364)
T KOG0290|consen 49 AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLD---EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-----S 120 (364)
T ss_pred eeccccCCCcceeEEEeeeccccCCeeEEEEEc---cCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-----c
Confidence 35565 4 455777754332234566776665 3334443332 223479999999999 578853 7
Q ss_pred CeEEEEEcc--cceEEEEEEEEeccC----CC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeE
Q 001314 74 DSVKICFFS--NNHWYLKYEIRYLRR----DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 146 (1102)
Q Consensus 74 ~~vqLWt~~--NYHWYLKqei~~~~~----~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l 146 (1102)
|.+.||.++ --.--++..+..... .+ ++|.|....|.. |+|++ +-+.--.|++...-.++|
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~--igtSS--iDTTCTiWdie~~~~~~v-------- 188 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL--IGTSS--IDTTCTIWDIETGVSGTV-------- 188 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce--eEeec--ccCeEEEEEEeeccccce--------
Confidence 899999988 222111111111111 12 469999999983 33432 333333455443211111
Q ss_pred EeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 147 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 147 ~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
+. .=|.-+..|-||+|+.+ +.+.||-|-.||++-+|.+-.
T Consensus 189 -----kT---------QLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 189 -----KT---------QLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred -----ee---------EEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecc
Confidence 11 11345778999999994 456899999999999999854
No 94
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.05 E-value=0.37 Score=55.65 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=119.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
++.|.++|.++.+.- ...-|-.|+-|=.---.|.-- ..+.|..|+.++.-...+-. .+..+|.+|...+
T Consensus 143 ~m~ws~~g~wmiSgD------~gG~iKyWqpnmnnVk~~~ah--h~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 143 TMKWSHNGTWMISGD------KGGMIKYWQPNMNNVKIIQAH--HAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRM 211 (464)
T ss_pred eEEEccCCCEEEEcC------CCceEEecccchhhhHHhhHh--hhhhhheeccCCCCceeEEe---cCCCeEEEEeccC
Confidence 578999999888843 356899999885544433221 23469999999755555433 4466899999999
Q ss_pred ceEEEEEEEEeccC--CCceEEecCCCCceEEEEeeCCcEEEEEEEEeeee--------cCCcEE-EE---EeCCeEEec
Q 001314 84 NHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--------MENSTA-LV---IDGSKILVT 149 (1102)
Q Consensus 84 YHWYLKqei~~~~~--~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~--------~d~~~v-aV---IDG~~l~lT 149 (1102)
++ +|...... +.-++.|||++.+ ++.+..+ ++. . .|+.-. ....+| +| -+| +.|+|
T Consensus 212 ~k----ee~vL~GHgwdVksvdWHP~kgL-iasgskD-nlV--K-lWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt 281 (464)
T KOG0284|consen 212 PK----EERVLRGHGWDVKSVDWHPTKGL-IASGSKD-NLV--K-LWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLT 281 (464)
T ss_pred Cc----hhheeccCCCCcceeccCCccce-eEEccCC-cee--E-eecCCCcchhhhhhhccceEEEEEEcCCC-CeeEE
Confidence 97 66655332 2246999999998 6665433 322 1 254420 011122 22 334 44444
Q ss_pred cCCCCCC--------CCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccc
Q 001314 150 PLSLSLM--------PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISE 221 (1102)
Q Consensus 150 p~r~a~V--------PPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~ 221 (1102)
-=+...+ ---|+++ .-..-|.++++.|-+. +.|...-.+|++.+|.++......++ ..
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r--~Hkkdv~~~~WhP~~~-~lftsgg~Dgsvvh~~v~~~~p~~~i-----------~~ 347 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYR--GHKKDVTSLTWHPLNE-SLFTSGGSDGSVVHWVVGLEEPLGEI-----------PP 347 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhh--cchhhheeeccccccc-cceeeccCCCceEEEeccccccccCC-----------Cc
Confidence 3333310 0000111 0122367788777554 45666678999999998632222111 12
Q ss_pred cccCceEEEEEecCceEEEE
Q 001314 222 TAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 222 ~~~~~~~~~~w~~~~~ll~~ 241 (1102)
...+.+-.+.|-.-|.|++.
T Consensus 348 AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 348 AHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred ccccceeeeeccccceeEee
Confidence 34457888889888888885
No 95
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.02 E-value=0.44 Score=55.03 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=57.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcce----ee---e--------ecCCccccceeeeeecCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER----SS---F--------DINEQIDSTVELLKWNCMSDLLAAVV 68 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrh----ge---F--------~L~~~~~~~v~~L~Wn~DS~iLAv~~ 68 (1102)
.+.|.|.|+++|+.. +...|.+|-.+--+- +| + .+++ ....|-+|+|++||..|...-
T Consensus 70 ~vRf~p~gelLASg~------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 70 VVRFSPDGELLASGG------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred EEEEcCCcCeeeecC------CCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeee
Confidence 467999999999965 345666666552111 01 0 1111 122478899999999998764
Q ss_pred eeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCc
Q 001314 69 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPL 110 (1102)
Q Consensus 69 ~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl 110 (1102)
-...+.+|+.+-.. ...+......-+ -+.|||.+..
T Consensus 143 ---~dns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 143 ---VDNSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred ---ccceEEEEEeccce---eEeeccccccccceeecchhhhh
Confidence 24579999987654 233322111113 3899998775
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.01 E-value=0.11 Score=65.03 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=69.7
Q ss_pred ceeeccC-CCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCcc-ccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPs-GnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~-~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++|.|. |.|.+... +++|+.|.|+|-.+ .|.|+... ...+..+.|++.|..||... ....|-+|.+
T Consensus 193 ~~aW~Pk~g~la~~~~-------d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv 261 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPV-------DNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNV 261 (933)
T ss_pred eeeecCCCCeEEeecc-------CCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEec
Confidence 5799996 66655543 67999999999887 78999632 33499999999999999875 3457999988
Q ss_pred ccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCc
Q 001314 82 SNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQ 120 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~ 120 (1102)
-. | |.+- ....+ ++.|+|..+- +-+.+..|.
T Consensus 262 ~t-~-----~~~~-~~~~Vc~~aw~p~~n~-it~~~~~g~ 293 (933)
T KOG1274|consen 262 DT-H-----ERHE-FKRAVCCEAWKPNANA-ITLITALGT 293 (933)
T ss_pred cc-c-----hhcc-ccceeEEEecCCCCCe-eEEEeeccc
Confidence 76 3 2211 11234 4799998765 555455553
No 97
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.98 E-value=0.45 Score=59.90 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=95.2
Q ss_pred CCcchhhHHHHHHhcCCh-----hhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHH
Q 001314 693 RDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME 767 (1102)
Q Consensus 693 kDPkEYLpfL~~L~~le~-----~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~ 767 (1102)
.|--|=.+.++++-++++ .+.-.+|.--+|+.+||++-...+ .| -+|...
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA-------------AH-----------L~p~d~- 207 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA-------------AH-----------LNPKDY- 207 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH-------------Hh-----------cCCCCh-
Confidence 555555677777666632 234446665666666665533222 11 233333
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHH----HHhhcC-CChHHHHHHHHHHH
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLT----VAGLLK-LGKDEVAKLAQELC 834 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~----lA~~l~-~~~~el~~l~~~lA 834 (1102)
+.|..+|+...+.+++++|..+|.+|=. +-+=...|.+.|+..+|+. +....+ .+=+...++....+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 5666666666666666666666666511 1122233444444443332 112121 11134456777788
Q ss_pred HHHHHcCChHHHHHHHHHhcC---------CHHHHHHHHHHhcCHHHHHHHHHh
Q 001314 835 EELQALGKPGEAAKIALDYCG---------DVTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 835 ~~L~~~g~~~eAa~i~l~ylg---------D~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
..+...++.+-|++++..++. |++-.+.+|.+.++|+.|++....
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 888888888888888877654 688899999999999999987654
No 98
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.94 E-value=1.2 Score=52.44 Aligned_cols=178 Identities=21% Similarity=0.327 Sum_probs=103.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCC------------------ccc---------------
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE------------------QID--------------- 49 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~------------------~~~--------------- 49 (1102)
+|.|+..|++|++... +..+++|+ .-|-..-+|.+-. +..
T Consensus 281 slKWnk~G~yilS~~v------D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGGV------DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKT 354 (524)
T ss_pred EEEEcCCCCEEEeccC------CccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCccee
Confidence 5889999999999752 23444444 3455555555442 110
Q ss_pred -----cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEE-----EEEEEEeccCCCceEEecCCCCc--------e
Q 001314 50 -----STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-----LKYEIRYLRRDGIRFMWHPTKPL--------Q 111 (1102)
Q Consensus 50 -----~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWY-----LKqei~~~~~~~~~~~W~~e~pl--------~ 111 (1102)
-.|..|.||+.+.+||-. .....+.||.+++---. --||| .+++|+|..|. .
T Consensus 355 ~~GH~g~V~alk~n~tg~LLaS~---SdD~TlkiWs~~~~~~~~~l~~Hskei-------~t~~wsp~g~v~~n~~~~~~ 424 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLLASC---SDDGTLKIWSMGQSNSVHDLQAHSKEI-------YTIKWSPTGPVTSNPNMNLM 424 (524)
T ss_pred eecccCceEEEEECCCCceEEEe---cCCCeeEeeecCCCcchhhhhhhccce-------eeEeecCCCCccCCCcCCce
Confidence 138899999999999965 33458999998764200 01222 34778877773 2
Q ss_pred EEEEeeCCcEEEEEEEEeee---e--cCCcEEEE---EeCCeEEeccCCCCCCCCccccccc----ccCCceeEEEEecC
Q 001314 112 LICWTLDGQITTYNFIWTTA---V--MENSTALV---IDGSKILVTPLSLSLMPPPMYLFSL----KFPTAVTEMAFYSK 179 (1102)
Q Consensus 112 L~i~t~~g~~~~~~~~w~~~---~--~d~~~vaV---IDG~~l~lTp~r~a~VPPPM~~~~l----~~~~~i~~vaf~~~ 179 (1102)
|+-...++.+..++..--+. . +...+.+| -||..+.-=.|...+.|-|.-...+ .=...|.+|.|+..
T Consensus 425 l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAA 504 (524)
T ss_pred EEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCC
Confidence 22223344444433221111 0 11223333 4677777777777777666655443 23445778888765
Q ss_pred CCCceEEEEEeCCceEEEec
Q 001314 180 SSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 180 ~~~~~~a~vl~~~~l~l~~~ 199 (1102)
+ +-+++..+++.+++..+
T Consensus 505 G--~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 505 G--DKLGACASDGSVCVLDL 522 (524)
T ss_pred C--CEEEEEecCCCceEEEe
Confidence 5 56777788888777653
No 99
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.89 E-value=0.58 Score=58.81 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=81.1
Q ss_pred cchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcC-----CC
Q 001314 751 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK-----LG 822 (1102)
Q Consensus 751 ~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~-----~~ 822 (1102)
++.++=+.|+ .+++..+.|...-|+..+++|++++|..+|..||+|+++++...++- .++ ++.... -.
T Consensus 395 G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L--s~~--l~~~~~~~~~~s~ 470 (613)
T PF04097_consen 395 GLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL--SQV--LSQPSSSSLSDSE 470 (613)
T ss_dssp -HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH--HHH--HHCSSTSSSSSTT
T ss_pred ceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH--HHH--HcCccccccccch
Confidence 3444444443 35667889999999999999999999999999999999999987632 112 221111 12
Q ss_pred hHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 001314 823 KDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 880 (1102)
Q Consensus 823 ~~el~~l~~~lA~~L~~~g~~-----~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h 880 (1102)
.+++..++..+.+.+...+.. ..+...+ ..+-++-++-..|-.+ +|++|+....+.
T Consensus 471 ~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~-~~Ll~L~~ff~~~~~g-~~~~AL~~i~~L 531 (613)
T PF04097_consen 471 RERLIELAKEILERYKSNPHISSKVSRKNRETF-QLLLDLAEFFDLYHAG-QYEQALDIIEKL 531 (613)
T ss_dssp TTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHH-HHHHHHHHHHHHHHTT--HHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhCcchHhhccHHHHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHhC
Confidence 356778899999998865443 2223332 3355666666665554 799999877654
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.54 Score=56.68 Aligned_cols=183 Identities=16% Similarity=0.154 Sum_probs=108.1
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
++|+|. ++.+.+-+| +...+.+==|-+..+.+ ++.+. ...|-+|+||+|+..||-- .....|.+|+..
T Consensus 264 g~laW~--~~~lssGsr-----~~~I~~~dvR~~~~~~~-~~~~H-~qeVCgLkws~d~~~lASG---gnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSR-----DGKILNHDVRISQHVVS-TLQGH-RQEVCGLKWSPDGNQLASG---GNDNVVFIWDGL 331 (484)
T ss_pred EEEecc--CceEEEecC-----CCcEEEEEEecchhhhh-hhhcc-cceeeeeEECCCCCeeccC---CCccceEeccCC
Confidence 479999 443444332 23334444477777777 66653 3369999999999999964 345589999984
Q ss_pred cceEEEEEEEEeccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcc
Q 001314 83 NNHWYLKYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 160 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM 160 (1102)
--++-++ +..... + .+.|+|=.+--|++|. |.--..=..|++.. |..+
T Consensus 332 ~~~p~~~----~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~----------g~~i-------------- 381 (484)
T KOG0305|consen 332 SPEPKFT----FTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNT----------GARI-------------- 381 (484)
T ss_pred CccccEE----EeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCC----------CcEe--------------
Confidence 4343221 221122 3 3899998887677743 22111111265541 1111
Q ss_pred cccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEE
Q 001314 161 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 240 (1102)
Q Consensus 161 ~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~ 240 (1102)
..+...+.|..+++++...+-....-.+++.+.||.++......++.| .-..+.++.|-.++.-++
T Consensus 382 --~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g------------H~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 382 --DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG------------HTSRVLYLALSPDGETIV 447 (484)
T ss_pred --cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC------------CcceeEEEEECCCCCEEE
Confidence 123345678889999876542222236778899999987555443433 223577888887766555
Q ss_pred E
Q 001314 241 V 241 (1102)
Q Consensus 241 ~ 241 (1102)
+
T Consensus 448 t 448 (484)
T KOG0305|consen 448 T 448 (484)
T ss_pred E
Confidence 4
No 101
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.81 Score=49.80 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 001314 829 LAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 870 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W 870 (1102)
++.+++..=...+.+.+=+++|..=+.|++.||..|-.+..|
T Consensus 102 Iyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 102 IYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555544456677777777776666
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.80 E-value=0.94 Score=49.81 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=83.1
Q ss_pred cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEE
Q 001314 50 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW 128 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w 128 (1102)
.+|..++||+||.-||--- -...+.+|..---. .+|..-..+..+. ..++|||..|-.|+....+-.+.+.++.-
T Consensus 21 ~~v~Sv~wn~~g~~lasgs---~dktv~v~n~e~~r-~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGS---FDKTVSVWNLERDR-FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hcceEEEEcccCceeeecc---cCCceEEEEecchh-hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 3699999999999999643 23367777654332 2333333333333 35899999998777744333455544431
Q ss_pred eee---------------ecCCcEEEEEeCCeEEec-cCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCC
Q 001314 129 TTA---------------VMENSTALVIDGSKILVT-PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 192 (1102)
Q Consensus 129 ~~~---------------~~d~~~vaVIDG~~l~lT-p~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~ 192 (1102)
..+ .++++.++|.+-+..+.| .-|. =-+|-.+++++ -++.++|. ++.+.|.+-.+.|
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~---~~~~~~~~~~~--e~ne~~w~--~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDART---YKIVNEEQFKF--EVNEISWN--NSNDLFFLTNGLG 169 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecc---cceeehhcccc--eeeeeeec--CCCCEEEEecCCc
Confidence 111 246667777665554433 2222 34455554444 57788886 3334455445558
Q ss_pred ceEEEecCC
Q 001314 193 CLCVVDLPA 201 (1102)
Q Consensus 193 ~l~l~~~~~ 201 (1102)
++.+..+|.
T Consensus 170 ~v~ILsyps 178 (313)
T KOG1407|consen 170 CVEILSYPS 178 (313)
T ss_pred eEEEEeccc
Confidence 999999875
No 103
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.78 E-value=0.24 Score=59.78 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=113.5
Q ss_pred hcCCcchhhHHHHHHhcCChhhhch-----hHHHhhhcHHHHHHHHHHcCCCcH---------------HHHHHHHHHHh
Q 001314 691 SQRDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDSYH---------------ADCLNLMKKYA 750 (1102)
Q Consensus 691 sqkDPkEYLpfL~~L~~le~~~rr~-----~Id~~LkryekAl~hl~~~g~~~~---------------deAie~~~~~~ 750 (1102)
+|.+--+=++.-.+--++++++-.+ .|-.-.++|+.|+.-|.++-..+. +--+++.+++
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~- 308 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT- 308 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH-
Confidence 3444444455555555566554443 444456778888887776522111 1234555555
Q ss_pred cchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc----CCHHHHH----HHHHHcCCHHHHHHHHhh-cCC
Q 001314 751 QLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----SSLEKAM----KAYRASGNWSGVLTVAGL-LKL 821 (1102)
Q Consensus 751 ~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a----g~~ekAl----~~y~~ag~W~~al~lA~~-l~~ 821 (1102)
|++||++- ....+.+...|.-|.+.|+..||..+|.+| -++..|+ .+|.+.|..++|..+=.. +..
T Consensus 309 --Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 309 --YKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred --HHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 77777653 224456667888899999999999999887 3445555 457777777777554321 222
Q ss_pred ChHHHHHHHHHHHHHHHHcCChHHHHHHHHHh--------------------cCCHHHHHHHHHHhcCHHHHH
Q 001314 822 GKDEVAKLAQELCEELQALGKPGEAAKIALDY--------------------CGDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 822 ~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y--------------------lgD~e~AI~~y~~~~~W~eA~ 874 (1102)
.+ +..+-...+|..++++|++.+|...|.+- .||+..|++||-++=+..-++
T Consensus 384 ~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 384 FP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred Ch-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 22 44456677888999999999888776441 488999999998887765554
No 104
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.78 E-value=0.4 Score=57.99 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=73.3
Q ss_pred cchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc---------------------CCHHHHHHHHHHcCCH
Q 001314 751 QLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGNW 809 (1102)
Q Consensus 751 ~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a---------------------g~~ekAl~~y~~ag~W 809 (1102)
+.|++|++| || .+.+.+-..|.-|.+.+.|++|...|++| |..+-|+++|.+
T Consensus 239 q~y~eAvkl--dP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr---- 311 (966)
T KOG4626|consen 239 QHYEEAVKL--DP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR---- 311 (966)
T ss_pred HHHHHhhcC--CC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH----
Confidence 446666665 33 24455667788888999999999999887 556777777765
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH---hcCCHHHH----HHHHHHhcCHHHHHHH
Q 001314 810 SGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---YCGDVTNG----ISLLIDARDWEEALRV 876 (1102)
Q Consensus 810 ~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~---ylgD~e~A----I~~y~~~~~W~eA~rL 876 (1102)
|+.+ +.+ ..+-+..+|..|++.|+..||..+|-+ ++-....| -..|-+.+.+++|.|+
T Consensus 312 --al~~--~P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 312 --ALEL--QPN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred --HHhc--CCC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 3332 111 224678889999999999999998854 22233332 3456666677777664
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.76 E-value=0.41 Score=60.09 Aligned_cols=152 Identities=16% Similarity=0.174 Sum_probs=92.1
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC-cc------ccceeeeeecCCCCeEEEEEeeCCCCeE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QI------DSTVELLKWNCMSDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~-~~------~~~v~~L~Wn~DS~iLAv~~~~~~~~~v 76 (1102)
+|+.-|.|+++|++. .+..|-||+=-- +---++|++ .. ...|..++|.++|--||+.. -.+.|
T Consensus 143 ~l~~~p~~~fLAvss------~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~V 212 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSS------CDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTV 212 (933)
T ss_pred eeeEcCCCCEEEEEe------cCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeE
Confidence 478899999999986 345788887430 111223332 11 12589999999955555553 25689
Q ss_pred EEEEcccceEEEEEEEEecc-CCC-c-eEEecCCCCceEEEEeeCCcEEEEEEE------Ee--ee----ecCCcEEEEE
Q 001314 77 KICFFSNNHWYLKYEIRYLR-RDG-I-RFMWHPTKPLQLICWTLDGQITTYNFI------WT--TA----VMENSTALVI 141 (1102)
Q Consensus 77 qLWt~~NYHWYLKqei~~~~-~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~------w~--~~----~~d~~~vaVI 141 (1102)
.++.+.+|- +|----+. ... . .+.|+|-..+ |+.++.+|++.+.|+. +. ++ .++-+.+.+|
T Consensus 213 kvy~r~~we---~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 213 KVYSRKGWE---LQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred EEEccCCce---eheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEE
Confidence 999999976 33221111 112 3 3799999655 9999999999874433 10 11 1122333344
Q ss_pred eCCeEEeccCCCCCCCCccc--ccccccCCce
Q 001314 142 DGSKILVTPLSLSLMPPPMY--LFSLKFPTAV 171 (1102)
Q Consensus 142 DG~~l~lTp~r~a~VPPPM~--~~~l~~~~~i 171 (1102)
|-. ..-++..++||+-|- ...+.+++.+
T Consensus 289 ~~~--g~~~~~~~iv~~S~~~~~~tv~~~d~v 318 (933)
T KOG1274|consen 289 TAL--GTLGVSPAIVPNSGLSVLSTVPLQDSV 318 (933)
T ss_pred eec--cccccChhhcccccccccCCccccccc
Confidence 321 233677788999888 5555555544
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.71 E-value=1.7 Score=49.00 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=101.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCcc------ccceeeeeecCCCCeEEEEEeeCCCCeEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI------DSTVELLKWNCMSDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~------~~~v~~L~Wn~DS~iLAv~~~~~~~~~vq 77 (1102)
++-..|-|.++|.-. .+..||+|+ |..+... -..|..|+|++||..|--.- ....|.
T Consensus 28 ~~~Fs~~G~~lAvGc------~nG~vvI~D--------~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS---~D~si~ 90 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGC------ANGRVVIYD--------FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS---RDWSIK 90 (405)
T ss_pred eEEeccCcceeeeec------cCCcEEEEE--------ccccchhhhhhccccceeEEEecCCCCEeeeec---CCceeE
Confidence 455677899999865 356888885 4444321 13599999999999987543 134799
Q ss_pred EEEcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEee---------------------------
Q 001314 78 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT--------------------------- 130 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~--------------------------- 130 (1102)
+|+...-- +-++|+|++.- ...+|||.+.....+.-.+..-...+|.=.+
T Consensus 91 lwDl~~gs--~l~rirf~spv-~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 91 LWDLLKGS--PLKRIRFDSPV-WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EEeccCCC--ceeEEEccCcc-ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence 99988776 56778885421 2479999988744432223222233332000
Q ss_pred --eecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCC
Q 001314 131 --AVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 203 (1102)
Q Consensus 131 --~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~ 203 (1102)
.+...|-..|+|..++.+- +.+.+..-.+|.++-|+..++ .++.=++|+.+-.|+..+.+
T Consensus 168 IitGtsKGkllv~~a~t~e~v-----------as~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECV-----------ASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDID 229 (405)
T ss_pred EEEecCcceEEEEecchheee-----------eeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhc
Confidence 0112245556666666422 223333345777888877654 34555788888889875443
No 107
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.70 E-value=1.9 Score=51.70 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=61.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee-cCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~-L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..+|.|.|+.||.+... +.+..|.+++-++=+...++ .++ .+....|++||.-||+....+....|.++...
T Consensus 200 ~p~wSPDG~~la~~s~~---~~~~~I~~~dl~~g~~~~l~~~~g----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFE---SKKPVVYVHDLATGRRRVVANFKG----SNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cceEcCCCCEEEEEEcc---CCCcEEEEEECCCCCEEEeecCCC----CccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 46899999999987643 13567888886543333332 222 45678999999999987643332234444333
Q ss_pred cceEEEEEEEEeccCCC--ceEEecCCCCceEEEEee-CCcEEEE
Q 001314 83 NNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTL-DGQITTY 124 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~-~g~~~~~ 124 (1102)
.-. + + +...... ....|+|.... |++.+. .|...+|
T Consensus 273 ~~~--~-~--~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy 311 (427)
T PRK02889 273 GSG--L-R--RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIY 311 (427)
T ss_pred CCC--c-E--ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEE
Confidence 222 1 1 1221122 34789987655 444332 3444333
No 108
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.69 E-value=1.7 Score=52.15 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=62.7
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee-cCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~-L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..+|.|.|+.||.+... +.+..|..+.-+|-+...++ .++ ......|++||+-|++....+....|.+|+..
T Consensus 208 ~p~wSpDg~~la~~s~~---~~~~~l~~~dl~~g~~~~l~~~~g----~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFE---RGRSAIYVQDLATGQRELVASFRG----INGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred cccCCCCCCEEEEEecC---CCCcEEEEEECCCCCEEEeccCCC----CccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 46899999999987532 13567877876654333322 121 34578999999999987754445579999887
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
+-. .+.+.........+.|+|.... |++
T Consensus 281 ~g~---~~~lt~~~~~~~~~~~spDG~~-l~f 308 (433)
T PRK04922 281 SRQ---LTRLTNHFGIDTEPTWAPDGKS-IYF 308 (433)
T ss_pred CCC---eEECccCCCCccceEECCCCCE-EEE
Confidence 655 1222211111135789987554 444
No 109
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.31 Score=62.39 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCc-HHHHHHHHHHHhcchHHHHh
Q 001314 680 DLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSY-HADCLNLMKKYAQLFPLGLK 758 (1102)
Q Consensus 680 Dl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~-~deAie~~~~~~~Ly~~AL~ 758 (1102)
-+-.|+++|...-.|..+ -.-|+|++++..=+.+++-|=..+ .+.-++ .+++ +.|++++.
T Consensus 515 ~~a~AliiA~~gg~el~~-----------------~t~~~Y~~k~~~k~s~li~a~v~~d~~~~ve-~~~~-k~Wke~la 575 (1049)
T KOG0307|consen 515 KMADALIIAHAGGTELLE-----------------STRDKYLAKSNSKLSRLIYAMVNRDLDDYVE-TCEV-KQWKETLA 575 (1049)
T ss_pred HHHHHHHHHhcCCHHHHH-----------------HHHHHHHHHhCChHHHHHHHHHhhhHHHHHh-hcch-hhHHHHHH
Confidence 344478888866555422 122445555554455665542211 222222 3566 78999999
Q ss_pred cc---CCcHhHHHHHHHHHHHHhccc-ChHHHHHHHHHcCCHHHHHHHHHHcCCHH-----------HHHHHHhhcC---
Q 001314 759 LI---TDPAKMEQVLEAWADHLSDVK-CFEDAATTYFCCSSLEKAMKAYRASGNWS-----------GVLTVAGLLK--- 820 (1102)
Q Consensus 759 L~---~d~~~~~~i~~~yAd~L~~~~-~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~-----------~al~lA~~l~--- 820 (1102)
++ .++++..++|...|++|+..+ .-..|...|+.+|+.++.+.++.++++-+ ..+.++..+.
T Consensus 576 ~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~~~~~y~~~~e~l~~~~~~l~~~~ 655 (1049)
T KOG0307|consen 576 AICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLELAPTSYQDLAEDLMELTLKLAQFS 655 (1049)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhcccccchHHHHHHHHHHHHHHhhhhhcc
Confidence 87 577899999999999999999 55678899999999999999999888643 1111111111
Q ss_pred ---CChHHHHHHHHHHHHHHHHcCChHHHHH
Q 001314 821 ---LGKDEVAKLAQELCEELQALGKPGEAAK 848 (1102)
Q Consensus 821 ---~~~~el~~l~~~lA~~L~~~g~~~eAa~ 848 (1102)
..+..+..+....|+.|..+|....|-.
T Consensus 656 ~~~~~s~~l~~~~~~yanllasQG~~~~A~~ 686 (1049)
T KOG0307|consen 656 ANKTYSAGLAKKFSEYANLLASQGALAAAMS 686 (1049)
T ss_pred cCccccHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 1122345556666666666666655543
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=2.6 Score=48.03 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCC----hHHHHHHHHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLG----KDEVAKLAQE 832 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~l-~~~----~~el~~l~~~ 832 (1102)
..-.....|+-++..|-++.|..+|...-+ .+.-+..|..-.+|++|+.+|.++ .++ .-++...+.+
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 334566788889999999999999999866 234456788889999999999864 222 2366777888
Q ss_pred HHHHHHHcCChHHHHHHHHHhcCCHHHH-------HHHHHHhcCHHHHHHHH---HhcCChhhHHHHHHhHHHHHH
Q 001314 833 LCEELQALGKPGEAAKIALDYCGDVTNG-------ISLLIDARDWEEALRVA---FMHRREDLITKVKHASLECAS 898 (1102)
Q Consensus 833 lA~~L~~~g~~~eAa~i~l~ylgD~e~A-------I~~y~~~~~W~eA~rLa---~~h~~~dL~etv~~a~l~~a~ 898 (1102)
+|.......++..|-.++.+-+..-+.. -+++...++|..|++.- ..++ ++.+..|.+.+.++..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence 8888887777777766654322211111 12344556666665432 2233 5666666666655443
No 111
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=94.29 E-value=0.83 Score=61.19 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=120.3
Q ss_pred hcCChhhhchhHHHhhhcHHHHHHH-----HHHcCC-----------CcHHHHHHHH---HHHhcchHHHHhcc-----C
Q 001314 706 ESMPPLLMRYTIDLRLQRFENALKH-----IVSMGD-----------SYHADCLNLM---KKYAQLFPLGLKLI-----T 761 (1102)
Q Consensus 706 ~~le~~~rr~~Id~~LkryekAl~h-----l~~~g~-----------~~~deAie~~---~~~~~Ly~~AL~L~-----~ 761 (1102)
..+++.-+||.+.+.+..|-.+..- |.+.|- +..+|.+.++ .+++-.|.+.-++- .
T Consensus 1128 ~tLDecGlRfllamr~~~~ll~~lp~~raql~~~gl~ts~iaWAFHSe~eEeLlNl~psl~r~~~sW~elR~~gig~Wlk 1207 (2439)
T KOG1064|consen 1128 ETLDECGLRFLLALRLHTLLLTSLPGYRAQLLHQGLSTSHIAWAFHSENEEELLNLLPSLHRGDPSWNELREYGIGWWLK 1207 (2439)
T ss_pred ccccccchhHHHHHHHHHHHHhhchhhhhhhhhcCCchhheeeecccccHHHHHhhcccccCCCccHHHHHhhCchhhhc
Confidence 4466777788887766666555433 111111 2246666665 23346788776653 4
Q ss_pred CcHhHHHHHHHHHH-HHhcccChHHHHHHHHHcCCHHHHHHHHHHcC---CHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 001314 762 DPAKMEQVLEAWAD-HLSDVKCFEDAATTYFCCSSLEKAMKAYRASG---NWSGVLTVAGLLKLGKDEVAKLAQELCEEL 837 (1102)
Q Consensus 762 d~~~~~~i~~~yAd-~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag---~W~~al~lA~~l~~~~~el~~l~~~lA~~L 837 (1102)
+...++...++.|. ++..+++..+|+++|...++..=-...|+.+. +=+.+--+.. +..++..+..|.+=|=.|
T Consensus 1208 N~~~Lr~ciEKlAK~af~kn~dP~DaALfYLALkKk~Vl~gLfr~~~~hed~kmv~Ffsn--nF~eerWrkAAlKNAFvL 1285 (2439)
T KOG1064|consen 1208 NEQTLRKCIEKLAKAAFQKKRDPLDAALFYLALKKKQVLWGLFRLAKDHEDTKMVVFFSN--NFTEERWRKAALKNAFVL 1285 (2439)
T ss_pred cHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHhhc--cccHHHHHHHHHhhHHHH
Confidence 56677777776663 33447899999999999877655556666555 3333333333 356788899999999999
Q ss_pred HHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCC
Q 001314 838 QALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRR 882 (1102)
Q Consensus 838 ~~~g~~~eAa~i~l~ylgD~e~AI~~y~-~~~~W~eA~rLa~~h~~ 882 (1102)
...+||+.|+..|+- +|....||+.|| +.++.+=|+-+|..|..
T Consensus 1286 LgKhRfe~AaaFFLL-agslkDAI~VC~kkl~DiQLALvI~RlYEg 1330 (2439)
T KOG1064|consen 1286 LGKHRFEHAAAFFLL-AGSLKDAINVCCKKLNDIQLALVICRLYEG 1330 (2439)
T ss_pred hhhHHHHHHHHHHhh-cchHHHHHHHHHHhhhhhhhhheeeeeecC
Confidence 999999999999876 899999999999 56777778888887754
No 112
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=94.26 E-value=0.44 Score=56.59 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhc
Q 001314 740 ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 819 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l 819 (1102)
.-..+|.-. ..|+.|++|..-- +...++.-+|--....++..-++++|..+++.+|- .|+. -.+.+
T Consensus 578 ~iL~e~~ss--sKWeqavRLCrfv-~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKV--syin---------~iK~l 643 (737)
T KOG1524|consen 578 EILHEYLSS--SKWEQAVRLCRFV-QEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKV--SYIN---------HIKAL 643 (737)
T ss_pred HHHHHHhcc--chHHHHHHHHHhc-cchHHHHHHHHHHHhhccccHHHHHHHHhhchhhH--HHHH---------HHhcc
Confidence 444444444 6899999887100 11245666777777778888888888888877653 2221 01112
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 001314 820 KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 881 (1102)
Q Consensus 820 ~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~ 881 (1102)
+ .-...+|+.+.-.|+..||..+++. .|-+++|+.+-++..+|+.|+.|+.+|+
T Consensus 644 --t-----ske~~mA~~~l~~G~~~eAe~iLl~-~gl~~qav~lni~m~nW~RALEl~~K~K 697 (737)
T KOG1524|consen 644 --T-----SKEEQMAENSLMLGRMLEAETILLH-GGLIEQAVGLNIRMHNWRRALELSQKHK 697 (737)
T ss_pred --C-----cHHHHHHHHHHHhccchhhhHHHHh-cchHHHhhhhhhhhhhHHHHHHHHHhHH
Confidence 2 1245567777778999999999865 9999999999999999999999999985
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.09 E-value=0.28 Score=57.96 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=94.6
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEec-CCcceeeeecCC--ccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFER-NGLrhgeF~L~~--~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
.-+|.|.|++||+.+ .+..|-||.. +=-.|-.|-++- ..+..|..+.++.||.+|+-. ...+.+.+|+
T Consensus 322 sC~~nrdg~~iAagc------~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR---g~D~tLKvWD 392 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGC------LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR---GFDDTLKVWD 392 (641)
T ss_pred eeecCCCcchhhhcc------cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc---cCCCceeeee
Confidence 457999999999987 3568999994 433444555542 123469999999999999965 3456899999
Q ss_pred cccceEEEEEEEEecc-CCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 81 FSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~-~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
.-|++==|+--.-... -.+...+|+|..-+ +..||+-- +.+-.|...+-|-.++-.-
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~~-----------~~~~~g~L~f~d~~t~d~v---------- 450 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSAP-----------NGMTAGTLFFFDRMTLDTV---------- 450 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceE-EEeccccc-----------CCCCCceEEEEeccceeeE----------
Confidence 9998822222111111 11134788888766 45555310 0111122222332221110
Q ss_pred cccccccc-CCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 160 MYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 160 M~~~~l~~-~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
+.|.+ .+.|..+.+.+ .-|.|.|=++||++++|--+.
T Consensus 451 ---~ki~i~~aSvv~~~Whp--kLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 451 ---YKIDISTASVVRCLWHP--KLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ---EEecCCCceEEEEeecc--hhhheeeecCCCceEEEECcc
Confidence 01111 23455555533 237888889999999987543
No 114
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.01 E-value=17 Score=43.05 Aligned_cols=204 Identities=19% Similarity=0.217 Sum_probs=97.0
Q ss_pred hhhhHhHhcCCccHHHHHHHHHHHHhhhccCCCCcCCCChhhHHHHHHHHHhh------cchHHHHHHHHhccCHHHHHH
Q 001314 613 CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWL------ADSEAVYEAALGLYDLNLAAI 686 (1102)
Q Consensus 613 ~IlTa~v~k~Pp~le~aL~~i~~l~~~e~~~~~~~~~~~~~~ae~alk~l~fL------vDvn~Ly~~ALg~YDl~Lal~ 686 (1102)
+--..|.|+. +++.|...++.+-.. |.+.+ ..|..-|--|-|| +|+....+.||..=...-+
T Consensus 424 ~ka~~~lk~~--d~~~aieilkv~~~k------dnk~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~-- 491 (840)
T KOG2003|consen 424 NKAGELLKNG--DIEGAIEILKVFEKK------DNKTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA-- 491 (840)
T ss_pred hHHHHHHhcc--CHHHHHHHHHHHHhc------cchhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH--
Confidence 3345677755 899999888876421 11111 1222223333343 6666667777765444322
Q ss_pred HHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHH-------HHHhcchHHHHhc
Q 001314 687 VALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM-------KKYAQLFPLGLKL 759 (1102)
Q Consensus 687 VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~-------~~~~~Ly~~AL~L 759 (1102)
|+ . -+..|.---|.+++|++.|.++=.. -.-|.+.. ... +-.++||+.
T Consensus 492 -a~---~-------------------nkgn~~f~ngd~dka~~~ykeal~n-dasc~ealfniglt~e~~-~~ldeald~ 546 (840)
T KOG2003|consen 492 -AL---T-------------------NKGNIAFANGDLDKAAEFYKEALNN-DASCTEALFNIGLTAEAL-GNLDEALDC 546 (840)
T ss_pred -Hh---h-------------------cCCceeeecCcHHHHHHHHHHHHcC-chHHHHHHHHhcccHHHh-cCHHHHHHH
Confidence 11 1 1122222356777777777765210 12233332 233 344444444
Q ss_pred cCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 001314 760 ITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQA 839 (1102)
Q Consensus 760 ~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~ 839 (1102)
|. ++..|+..-++-| -+-+.+|+...+...|++.|..+. + ..+-++ .++.++|+-.-+
T Consensus 547 f~---klh~il~nn~evl------~qianiye~led~aqaie~~~q~~------s---lip~dp----~ilskl~dlydq 604 (840)
T KOG2003|consen 547 FL---KLHAILLNNAEVL------VQIANIYELLEDPAQAIELLMQAN------S---LIPNDP----AILSKLADLYDQ 604 (840)
T ss_pred HH---HHHHHHHhhHHHH------HHHHHHHHHhhCHHHHHHHHHHhc------c---cCCCCH----HHHHHHHHHhhc
Confidence 31 1122333333333 334556666667777776665432 1 122222 355556666666
Q ss_pred cCChHHHHHHHHHhc----CC---HHHHHHHHHHhcCHHHHHH
Q 001314 840 LGKPGEAAKIALDYC----GD---VTNGISLLIDARDWEEALR 875 (1102)
Q Consensus 840 ~g~~~eAa~i~l~yl----gD---~e~AI~~y~~~~~W~eA~r 875 (1102)
.|+-.+|-+++.+-- .+ ++=-...|++...|+.|+.
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666554310 11 2223344555555555553
No 115
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.92 E-value=0.63 Score=55.70 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
|...|.|+|.=.|...-. ---.|.||.-+|--.-+| |. ..=..+-||+-|.|+++.-=..-...|-+|++.
T Consensus 274 hdv~W~~s~~EF~VvyGf----MPAkvtifnlr~~~v~df--~e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGF----MPAKVTIFNLRGKPVFDF--PE---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred eEEEECCCCCEEEEEEec----ccceEEEEcCCCCEeEeC--CC---CCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 467899999877776533 235899999999887655 53 144568899999999987422224579999999
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcE-EEEEeCCeEEeccCC
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST-ALVIDGSKILVTPLS 152 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~-vaVIDG~~l~lTp~r 152 (1102)
||+ +-..+...+.+.+.|+|..-+ ++..|+.=++.+ |+|+ +-=++|..+.-+.|.
T Consensus 345 n~K----~i~~~~a~~tt~~eW~PdGe~-flTATTaPRlrv----------dNg~KiwhytG~~l~~~~f~ 400 (566)
T KOG2315|consen 345 NRK----LIAKFKAANTTVFEWSPDGEY-FLTATTAPRLRV----------DNGIKIWHYTGSLLHEKMFK 400 (566)
T ss_pred chh----hccccccCCceEEEEcCCCcE-EEEEeccccEEe----------cCCeEEEEecCceeehhhhh
Confidence 954 655666666667999998877 444444333332 3442 233678877777664
No 116
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.87 E-value=5.1 Score=44.88 Aligned_cols=182 Identities=19% Similarity=0.268 Sum_probs=91.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCcc----c--cceeeeee---cCC----CCeEEEEEee
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI----D--STVELLKW---NCM----SDLLAAVVRF 70 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~----~--~~v~~L~W---n~D----S~iLAv~~~~ 70 (1102)
-|+|.|+|.++|.+. ....|-||+=.| -.=|++|... + ..|-+|.. ..+ -++|+|-.
T Consensus 48 kl~WSpD~tlLa~a~------S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-- 117 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAE------STGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-- 117 (282)
T ss_pred EEEECCCCcEEEEEc------CCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec--
Confidence 489999999999986 356999998888 4456777321 1 12333311 111 14444433
Q ss_pred CCCCeEEEEEc---ccceEEEEEEEEeccC--CCc-eEEecCCCCceEEEE-eeCCcEEE------EEEEEeeeecCCc-
Q 001314 71 EEYDSVKICFF---SNNHWYLKYEIRYLRR--DGI-RFMWHPTKPLQLICW-TLDGQITT------YNFIWTTAVMENS- 136 (1102)
Q Consensus 71 ~~~~~vqLWt~---~NYHWYLKqei~~~~~--~~~-~~~W~~e~pl~L~i~-t~~g~~~~------~~~~w~~~~~d~~- 136 (1102)
...++=+.+ .|-....-+.+.|+.. .++ ++.|||..-+ |.|+ ...++-.. -=-+|.+- +|..
T Consensus 118 --~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L-LlVgG~~~~~~~~s~a~~~GLtaWRiL-~~~Py 193 (282)
T PF15492_consen 118 --RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL-LLVGGCEQNQDGMSKASSCGLTAWRIL-SDSPY 193 (282)
T ss_pred --cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE-EEEeccCCCCCccccccccCceEEEEc-CCCCc
Confidence 112222222 1333334555555443 233 5899999877 5553 22221000 00113322 0000
Q ss_pred EEEE-EeCCeEEecc--CCCCCCCCccccc--ccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 137 TALV-IDGSKILVTP--LSLSLMPPPMYLF--SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 137 ~vaV-IDG~~l~lTp--~r~a~VPPPM~~~--~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
.--| .-++.+..-+ +....+| +.-++ .-....-|.-++.||+++ .++++-.+|.|+||++|..
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~-~~~~fs~~~~~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIP-SFKFFSRQGQEQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeecc-ceeeeeccccCCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcc
Confidence 0000 1111111111 0111122 22222 223455677888888765 5888889999999999864
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=1.6 Score=53.00 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=73.2
Q ss_pred hhcHHHHHHHHHHcCC----Cc--HHHHHHHHHHHhcchHHHHhccC-CcHhHHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 721 LQRFENALKHIVSMGD----SY--HADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 721 LkryekAl~hl~~~g~----~~--~deAie~~~~~~~Ly~~AL~L~~-d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+.+|++|++.+-.-+. .. |++|-=.++- +.-++||..+. -...-..+.+.+|++|+..++|++|..+|...
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl--nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL--NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc--ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566666643333221 00 2444333322 34566666662 11111457888999999999999999999988
Q ss_pred -CCHHHHHHHHHHcCCHHHH--HH--HHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 794 -SSLEKAMKAYRASGNWSGV--LT--VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 794 -g~~ekAl~~y~~ag~W~~a--l~--lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
.+..+-.+.-++++.-..+ +. +....+..+++-.+++...|..+.+.|+|.+|.+++..
T Consensus 137 ~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 137 AKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4433333333333211111 10 12233333444566777788888888888888888643
No 118
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=93.73 E-value=0.32 Score=55.66 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=93.7
Q ss_pred eeeeecC--CCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEe
Q 001314 53 ELLKWNC--MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWT 129 (1102)
Q Consensus 53 ~~L~Wn~--DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~ 129 (1102)
-+|.||+ +|.+|.= +-...|.||+.++-.|-.-|.-..+....+ -++|+|...-.|+-.+.+|.+.+-+..-.
T Consensus 215 y~LdWSp~~~g~LlsG----Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSG----DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred eeeecccccccccccC----ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 4688998 4544421 113369999999999976554433322233 38999988877887788898887554421
Q ss_pred ---eeec---CCcEEEEEe-------------CCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEe
Q 001314 130 ---TAVM---ENSTALVID-------------GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 190 (1102)
Q Consensus 130 ---~~~~---d~~~vaVID-------------G~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~ 190 (1102)
.+.+ .++-|.||+ --++.+=.||.--.-.|.+.++.- ..+|.+|.|+|.. ...|+|.-.
T Consensus 291 ~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e-~s~iaasg~ 368 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHE-DSVIAASGE 368 (440)
T ss_pred CccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEecccc-CceEEeccC
Confidence 0100 223344443 345667777766556777777643 4589999998853 457888889
Q ss_pred CCceEEEecCC
Q 001314 191 DGCLCVVDLPA 201 (1102)
Q Consensus 191 ~~~l~l~~~~~ 201 (1102)
|+++.+|.+.-
T Consensus 369 D~QitiWDlsv 379 (440)
T KOG0302|consen 369 DNQITIWDLSV 379 (440)
T ss_pred CCcEEEEEeec
Confidence 99999999843
No 119
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.55 E-value=1 Score=51.45 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=103.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEec-CCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFER-NGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+....|-|+.|++..| +..|-.+|= +|---..| |++.+ =|.-+.=|-||+|+|-. .+...|.+|-.+
T Consensus 198 ~V~f~P~gd~ilS~sr------D~tik~We~~tg~cv~t~--~~h~e-wvr~v~v~~DGti~As~---s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSR------DNTIKAWECDTGYCVKTF--PGHSE-WVRMVRVNQDGTIIASC---SNDQTLRVWVVA 265 (406)
T ss_pred eEEEEecCCeeeeccc------ccceeEEecccceeEEec--cCchH-hEEEEEecCCeeEEEec---CCCceEEEEEec
Confidence 5677899999999875 457777763 44443344 44333 47777889999999964 567799999999
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEE-EEeeC---CcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCC
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLI-CWTLD---GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP 158 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~-i~t~~---g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPP 158 (1102)
|.. -|+|++--..---++.|-|+..+.=. -.|.+ |++. ...+-++++=.+ +||-
T Consensus 266 t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l-------~s~SrDktIk~w-------------dv~t 323 (406)
T KOG0295|consen 266 TKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL-------GSGSRDKTIKIW-------------DVST 323 (406)
T ss_pred cch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEE-------EeecccceEEEE-------------eccC
Confidence 963 14666521111125899887664111 11111 1121 112333333333 4788
Q ss_pred cccccccc-cCCceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 159 PMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 159 PM~~~~l~-~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
|||..++. .++=|.+|+|+|.+. .++-+..|++|.+|.+...
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gk--yi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGK--YILSCADDKTLRVWDLKNL 366 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCe--EEEEEecCCcEEEEEeccc
Confidence 89999985 466699999998653 5555678999999998653
No 120
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.54 E-value=4.1 Score=52.70 Aligned_cols=161 Identities=11% Similarity=0.014 Sum_probs=83.0
Q ss_pred hHHHhhhcHHHHHHHHHHc---CCCcHH-HHHH-HHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHH
Q 001314 716 TIDLRLQRFENALKHIVSM---GDSYHA-DCLN-LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 785 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~---g~~~~d-eAie-~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~ee 785 (1102)
.+....|++++|+.++.++ .++..+ ..+- +.... +.+..|+..+ .+|.. ..+...+|..+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~-g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRA-GRHWDELRAMTQALPRAPQT-QQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHH
Confidence 4444578888888887765 222222 1111 12343 6777777766 23332 3334457777777888888
Q ss_pred HHHHHHHcCCHH---H---------HHHHHHHc-----CCH---HHHHHHHhhc----CCChH---HHHHHHHHHHHHHH
Q 001314 786 AATTYFCCSSLE---K---------AMKAYRAS-----GNW---SGVLTVAGLL----KLGKD---EVAKLAQELCEELQ 838 (1102)
Q Consensus 786 Aa~~Y~~ag~~e---k---------Al~~y~~a-----g~W---~~al~lA~~l----~~~~~---el~~l~~~lA~~L~ 838 (1102)
|...+.++.... + .++.+... +.+ ++|+.....+ +..++ .......+....|.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 887777655410 1 11111100 112 2333221111 11111 11111112123445
Q ss_pred HcCChHHHHHHHHHhcCC----HHH----HHHHHHHhcCHHHHHHHHH
Q 001314 839 ALGKPGEAAKIALDYCGD----VTN----GISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 839 ~~g~~~eAa~i~l~ylgD----~e~----AI~~y~~~~~W~eA~rLa~ 878 (1102)
+.|++.+|...|...+.. +.. ...+|...+++++|+.+..
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 678999999988665432 322 4567888899999976543
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=93.54 E-value=0.71 Score=53.94 Aligned_cols=184 Identities=14% Similarity=0.189 Sum_probs=122.2
Q ss_pred Cceeecc--CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeec-CC----ccccceeeeeecCCCCeEEEEEeeCCCCe
Q 001314 3 AVLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-NE----QIDSTVELLKWNCMSDLLAAVVRFEEYDS 75 (1102)
Q Consensus 3 ~~LsWrP--sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L-~~----~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~ 75 (1102)
-.|+|.| .|.|+++.+ ++.|..|+=|+--+..=.+ |- ..+..|...+|..-.+-|=.-+ .+..+
T Consensus 181 ~glsWn~~~~g~Lls~~~-------d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv--~dd~~ 251 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSD-------DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV--GDDGK 251 (422)
T ss_pred cccccccccceeEeeccC-------CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee--cCCCe
Confidence 4589999 688888764 6899999999887742222 21 1234699999988655443333 34568
Q ss_pred EEEEEcccceEEEEEEEEe--ccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEE--------------------Eeee
Q 001314 76 VKICFFSNNHWYLKYEIRY--LRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFI--------------------WTTA 131 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~--~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~--------------------w~~~ 131 (1102)
+.||++-. | +.+..- ...++ .|+.|.|-...-|+.+.+++.+...|.. |+..
T Consensus 252 L~iwD~R~--~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 252 LMIWDTRS--N--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred EEEEEcCC--C--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 99999876 4 333332 22222 4689988888778887778887776654 3322
Q ss_pred -------ecCCcEEEEEeCCeEE--eccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 132 -------VMENSTALVIDGSKIL--VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 132 -------~~d~~~vaVIDG~~l~--lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
...++-+.|=|=+++- .+|-...=-||=|-|-.-.--+.|+|+++.+.. .-+|+-+..|+.|.+|+..
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e-PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE-PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC-CeEEEEecCCceEEEeecc
Confidence 1244556665544332 335566667888777776667789999988743 3578888899999999975
No 122
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.54 E-value=0.12 Score=57.97 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=50.2
Q ss_pred hHHHhhhcHHHHHHHHHHc---CC---CcHHHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHH
Q 001314 716 TIDLRLQRFENALKHIVSM---GD---SYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDA 786 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~---g~---~~~deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeA 786 (1102)
.+..-+|++++|+..|-++ ++ ..+...+.+ ... +.|++|++++ .........+..++..+...++|++|
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 129 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD-GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEA 129 (280)
T ss_dssp --------------------------------------------------------------------H-HHHTT-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccccchhhHHHHHHHHHhHHHHH
Confidence 3444455555555554432 11 112333444 333 5566666555 11111123334444445555555555
Q ss_pred HHHHHHcCC----------HHHHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 001314 787 ATTYFCCSS----------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 855 (1102)
Q Consensus 787 a~~Y~~ag~----------~ekAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylg 855 (1102)
..++..+.. +-....+|.+.|++++|+.+.++ +...+++ .++...++-.|.+.|++.+|..++..+..
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 130 EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555554210 01112344455555555544332 1111211 23555667777777888776666544322
Q ss_pred C------H-HHHHHHHHHhcCHHHHHHHHHh
Q 001314 856 D------V-TNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 856 D------~-e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
. + ..-..+|...++.++|+....+
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHhccccccccccccccc
Confidence 1 1 3345566677777777765443
No 123
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.49 E-value=3.9 Score=48.34 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=60.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|+.||.+.... ....|.+++-.+-+.-.+. .....+....|++||.-|++.........|.+|..++
T Consensus 194 ~p~~Spdg~~la~~~~~~---~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFES---GKPEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred cccCCCCCCEEEEEEcCC---CCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 457999999999876431 3578888886543222211 1112355689999999998876444445688888876
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-. .+.+...........|+|.... |++
T Consensus 268 ~~---~~~l~~~~~~~~~~~~s~dg~~-l~~ 294 (417)
T TIGR02800 268 KQ---LTRLTNGPGIDTEPSWSPDGKS-IAF 294 (417)
T ss_pred CC---EEECCCCCCCCCCEEECCCCCE-EEE
Confidence 54 2222211111134688885443 444
No 124
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=1.8 Score=51.25 Aligned_cols=135 Identities=13% Similarity=0.007 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHc---------------------CCHHHHHHHHHHcCC-----HHHHHHHHhhc--
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGN-----WSGVLTVAGLL-- 819 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~a---------------------g~~ekAl~~y~~ag~-----W~~al~lA~~l-- 819 (1102)
+-|..+|.|+.-++++|.|..+|.+| ++...|+++|++|-+ +|.=..+.+.+
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 55777899999999999999999987 456788999887642 22222222211
Q ss_pred -CCChHHHHHHHHHHHHHHH--HcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhHHHH
Q 001314 820 -KLGKDEVAKLAQELCEELQ--ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLEC 896 (1102)
Q Consensus 820 -~~~~~el~~l~~~lA~~L~--~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~l~~ 896 (1102)
+|. ...-.+-.-|..|. ..+....-+++|.+ ++.+++||.||.++-...++ ++...--+..
T Consensus 411 m~Mh--~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dt-------------e~~~l~~Lak 474 (559)
T KOG1155|consen 411 MKMH--FYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDT-------------EGSALVRLAK 474 (559)
T ss_pred hcch--HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhcccc-------------chHHHHHHHH
Confidence 111 00111112222222 12234556778854 99999999999887665554 1111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001314 897 ASSLIGEYKEGLEKVGKYLTRY 918 (1102)
Q Consensus 897 a~~~~~el~e~~~~~~k~~~RL 918 (1102)
...-+.++.+...-+.||+.+.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 2233344555566677777766
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.43 E-value=3.4 Score=53.65 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=125.7
Q ss_pred cCCcchhhHHHHHHhcCChhhhch-----hHHHhhhcHHHHHHHHHHcCCC----cHHHH--HHHHHHHhcchHHHHhcc
Q 001314 692 QRDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDS----YHADC--LNLMKKYAQLFPLGLKLI 760 (1102)
Q Consensus 692 qkDPkEYLpfL~~L~~le~~~rr~-----~Id~~LkryekAl~hl~~~g~~----~~deA--ie~~~~~~~Ly~~AL~L~ 760 (1102)
+.|..+-+..|+++-+..+.-... .+...+|++++|+.++.++-+. ..... -...... +.|++|+++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 355544455555555554332211 5555679999999999998531 11222 1244565 8999999998
Q ss_pred -----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHH-----HHHHHH--cCCHHHHHHHHhhc-CCChHHHH
Q 001314 761 -----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA-----MKAYRA--SGNWSGVLTVAGLL-KLGKDEVA 827 (1102)
Q Consensus 761 -----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekA-----l~~y~~--ag~W~~al~lA~~l-~~~~~el~ 827 (1102)
.+|+. ..++...+.-+.+.+++++|...+.++...... ..+|.. .++..+|+...+++ ...+ +-.
T Consensus 126 ~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~ 203 (822)
T PRK14574 126 QSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP-TSE 203 (822)
T ss_pred HHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCH
Confidence 35555 333334467677778999999988887432111 123333 33443355444332 1122 123
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHH--HHHhHHHHHHHHHHH--
Q 001314 828 KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK--VKHASLECASSLIGE-- 903 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~et--v~~a~l~~a~~~~~e-- 903 (1102)
+++.++...|...|-..-|.++..++=+-+...-..-++...-.+-+|.+....+.+ .+. +.+.++.....++..
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~-~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE-TERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc-hhhHHHHHHHHHHHHHHHhhcc
Confidence 577788888888888888888876544333344444455555566666664433322 122 455555555555441
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHH
Q 001314 904 ----YKEGLEKVGKYLTRYLAVRQR 924 (1102)
Q Consensus 904 ----l~e~~~~~~k~~~RL~~lR~~ 924 (1102)
.+... ...+..||-.|..+
T Consensus 283 ~~p~~~~~~--~~~~~Drl~aL~~r 305 (822)
T PRK14574 283 KDPEAQADY--QRARIDRLGALLVR 305 (822)
T ss_pred CCCccchHH--HHHHHHHHHHHHHh
Confidence 11122 22444677666644
No 126
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.36 E-value=2 Score=52.46 Aligned_cols=187 Identities=19% Similarity=0.106 Sum_probs=103.3
Q ss_pred HHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChh---h------hchhHHHhhhcHHHHHHHHHHcCCCcHHHHH
Q 001314 673 EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPL---L------MRYTIDLRLQRFENALKHIVSMGDSYHADCL 743 (1102)
Q Consensus 673 ~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~---~------rr~~Id~~LkryekAl~hl~~~g~~~~deAi 743 (1102)
..|.+.+.++.+.+..+.-+-.=+|+-+-++.++..+.. + -.+.+-..+++|++|+...-..+....++++
T Consensus 84 ~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~l 163 (508)
T KOG1840|consen 84 SEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSL 163 (508)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHH
Confidence 467888888888888776666666776666666655321 1 1244555677788888777766532111111
Q ss_pred HHHHHHhcc-------hHHHHhcc------CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 001314 744 NLMKKYAQL-------FPLGLKLI------TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWS 810 (1102)
Q Consensus 744 e~~~~~~~L-------y~~AL~L~------~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~ 810 (1102)
...--.+.. +...+.+. .+|..... +... +.+|...|+|++|..-+.+
T Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~L-------------a~~y~~~g~~e~A~~l~k~----- 224 (508)
T KOG1840|consen 164 ADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRT-LRNL-------------AEMYAVQGRLEKAEPLCKQ----- 224 (508)
T ss_pred HhhccccccccccchhhHHHHHHHHHhcccCCchHHHH-HHHH-------------HHHHHHhccHHHHHHHHHH-----
Confidence 111000000 00111111 12322222 2223 4455555555555555544
Q ss_pred HHHH-HHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHH-------HH--------HHHHHHhcCHHHHH
Q 001314 811 GVLT-VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVT-------NG--------ISLLIDARDWEEAL 874 (1102)
Q Consensus 811 ~al~-lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e-------~A--------I~~y~~~~~W~eA~ 874 (1102)
|+. +++..++....+...+..+|..+...++|.+|+.+|.+-+...+ .| -.+|++.+.|+||-
T Consensus 225 -Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~ 303 (508)
T KOG1840|consen 225 -ALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAE 303 (508)
T ss_pred -HHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHH
Confidence 222 23344444456777788899999999999999999876432221 11 23477889999987
Q ss_pred HHHHh
Q 001314 875 RVAFM 879 (1102)
Q Consensus 875 rLa~~ 879 (1102)
..+..
T Consensus 304 ~~~e~ 308 (508)
T KOG1840|consen 304 EYCER 308 (508)
T ss_pred HHHHH
Confidence 76654
No 127
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.35 E-value=0.49 Score=51.39 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=71.1
Q ss_pred cchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc----------CCHHHHHHHHHHcCCHHHHHHHHhh-
Q 001314 751 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----------SSLEKAMKAYRASGNWSGVLTVAGL- 818 (1102)
Q Consensus 751 ~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a----------g~~ekAl~~y~~ag~W~~al~lA~~- 818 (1102)
..|.+|+.+- .+ -+|.+.||-||..+++|++|-..|.+| +-++.+--|..++|+...+...-++
T Consensus 90 e~YrkAlsl~p~~----GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 90 ESYRKALSLAPNN----GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHhcCCCc----cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 4567777776 22 257888999999999999999999988 3477788888888887777544332
Q ss_pred cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 819 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 819 l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
+.+++. ...-..++|..+.+.|+|.+|-..+..|.
T Consensus 166 L~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 166 LELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 322221 12346677888888999999877665543
No 128
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.27 E-value=2.3 Score=51.58 Aligned_cols=108 Identities=9% Similarity=0.161 Sum_probs=75.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc-cccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~-~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
++++.|.|++|++.. .+..|.+|+..+ |+..--.. ....|..++.+.|+..|+..- ....|.+|++.
T Consensus 251 ~~~f~p~g~~i~Sgs------~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~s~s---~d~~i~vwd~~ 318 (456)
T KOG0266|consen 251 SVAFSPDGNLLVSGS------DDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLVSAS---YDGTIRVWDLE 318 (456)
T ss_pred EEEecCCCCEEEEec------CCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEEEcC---CCccEEEEECC
Confidence 688999999999976 468999999887 44333221 223799999999999999872 24579999999
Q ss_pred cceEEEEE---EEEeccCC-Cc-eEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 83 NNHWYLKY---EIRYLRRD-GI-RFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 83 NYHWYLKq---ei~~~~~~-~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
+.+ |+ ++.-.... .+ ++.|+|..-+ |++++.++.+-.+++.
T Consensus 319 ~~~---~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 319 TGS---KLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLR 364 (456)
T ss_pred CCc---eeeeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEcc
Confidence 988 65 33222222 23 4788877665 6666666666664443
No 129
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.19 E-value=5.5 Score=43.81 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=94.8
Q ss_pred CeEEEEeeccCCCCCCeEEEEec-CCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEE
Q 001314 12 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 90 (1102)
Q Consensus 12 nlIA~~qr~~~~~~~~~VvFFER-NGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKq 90 (1102)
-++|++. -++.|.|||- -|-=-+ +++. .+.+|..|+=.+|...||+.. ..-|.||+.+.+.
T Consensus 11 viLvsA~------YDhTIRfWqa~tG~C~r--Tiqh-~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~n----- 72 (311)
T KOG0315|consen 11 VILVSAG------YDHTIRFWQALTGICSR--TIQH-PDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNN----- 72 (311)
T ss_pred eEEEecc------CcceeeeeehhcCeEEE--EEec-CccceeeEEEcCCcchhhhcc----CCeeEEEEccCCC-----
Confidence 3666654 4799999994 343333 3443 356899999999999999875 6678999887765
Q ss_pred EEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEE----EEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccc
Q 001314 91 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF----IWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 166 (1102)
Q Consensus 91 ei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~----~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~ 166 (1102)
..+ -..++- -.+++...-| .|=..++++|+|=|=| +|. |-|.+.++
T Consensus 73 ------p~P-v~t~e~----------h~kNVtaVgF~~dgrWMyTgseDgt~kIWd--------lR~-----~~~qR~~~ 122 (311)
T KOG0315|consen 73 ------PNP-VATFEG----------HTKNVTAVGFQCDGRWMYTGSEDGTVKIWD--------LRS-----LSCQRNYQ 122 (311)
T ss_pred ------CCc-eeEEec----------cCCceEEEEEeecCeEEEecCCCceEEEEe--------ccC-----cccchhcc
Confidence 111 011111 1123333333 3767778888765555 444 78889999
Q ss_pred cCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 167 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 167 ~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
++++||+|...++.. .+.+-..+|.+.+|.+..
T Consensus 123 ~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 123 HNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGE 155 (311)
T ss_pred CCCCcceEEecCCcc--eEEeecCCCcEEEEEccC
Confidence 999999999887654 456667788899998754
No 130
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.13 E-value=0.76 Score=53.60 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=89.9
Q ss_pred hcCCcchhhHHHHHHhcC-----ChhhhchhHHHhhhcHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhc
Q 001314 691 SQRDPKEFLPYLQELESM-----PPLLMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKL 759 (1102)
Q Consensus 691 sqkDPkEYLpfL~~L~~l-----e~~~rr~~Id~~LkryekAl~hl~~~g~~------~~deAie~~~~~~~Ly~~AL~L 759 (1102)
++.+--|-|-|.=+|+.+ +-.+|-+.|...+..-..|+++|.++..- -..+.-+++... +.=.+|.+.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhh
Confidence 445555556666666665 45688899999999999999999987531 123444555554 666677777
Q ss_pred cCCcHhH----HHHHHHHHHHHhcccChHHHHHHHHHcCCH-------HH-HHHHHHHcCCHHHHHHHHhh
Q 001314 760 ITDPAKM----EQVLEAWADHLSDVKCFEDAATTYFCCSSL-------EK-AMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 760 ~~d~~~~----~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~-------ek-Al~~y~~ag~W~~al~lA~~ 818 (1102)
++|.-++ -+..+-.|-|+.+.+=|+.|..+|++|... +- -..|+++.|+|++|+.+-+.
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6544333 244556788999999999999999998643 22 33789999999999987654
No 131
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.08 E-value=4.4 Score=42.29 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=57.2
Q ss_pred HHHHHHhcccChHHHHHHHHHcCCH----H----HHHHHHHHcCCHHHHHHHHhhcC-C-ChHHHHHHHHHHHHHHHHcC
Q 001314 772 AWADHLSDVKCFEDAATTYFCCSSL----E----KAMKAYRASGNWSGVLTVAGLLK-L-GKDEVAKLAQELCEELQALG 841 (1102)
Q Consensus 772 ~yAd~L~~~~~~eeAa~~Y~~ag~~----e----kAl~~y~~ag~W~~al~lA~~l~-~-~~~el~~l~~~lA~~L~~~g 841 (1102)
..|..+...+++++|..+|.++-.. . ....+|...|++++|.....+.- . ...........++..+...|
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 3444555555555555555444211 0 11233444555555544433320 0 00112245666788888999
Q ss_pred ChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHHHHh
Q 001314 842 KPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 842 ~~~eAa~i~l~ylg----D~---e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
++.+|...+.+-+. ++ -.-..+|...++|++|.....+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888755332 11 1233567778888888876554
No 132
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.00 E-value=3.2 Score=47.70 Aligned_cols=184 Identities=16% Similarity=0.155 Sum_probs=108.4
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
|+-.+.++++|-...+ ...+|++|.=.-|+-.- .++. .+..+-.|+.|+||..||-. .+++..|.++++.|-
T Consensus 135 lS~n~~n~ylAyp~s~----t~GdV~l~d~~nl~~v~-~I~a-H~~~lAalafs~~G~llATA--SeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGST----TSGDVVLFDTINLQPVN-TINA-HKGPLAALAFSPDGTLLATA--SEKGTVIRVFSVPEG 206 (391)
T ss_pred eccCCCCceEEecCCC----CCceEEEEEcccceeee-EEEe-cCCceeEEEECCCCCEEEEe--ccCceEEEEEEcCCc
Confidence 3333456688876533 46799999988887553 1222 23468899999999999975 477889999999999
Q ss_pred eEEEEEEEEeccCC-Cc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCC-cEEEEEeCCeEEeccCCCCCCCCcc-
Q 001314 85 HWYLKYEIRYLRRD-GI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVIDGSKILVTPLSLSLMPPPM- 160 (1102)
Q Consensus 85 HWYLKqei~~~~~~-~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~-~~vaVIDG~~l~lTp~r~a~VPPPM- 160 (1102)
+ +-+|++-+..- .+ ++.|||..++ |.+..+.+.+.++...-..+-.+. .....-=...+..+-.. -.|.-.
T Consensus 207 ~--kl~eFRRG~~~~~IySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~s--ylps~V~ 281 (391)
T KOG2110|consen 207 Q--KLYEFRRGTYPVSIYSLSFSPDSQF-LAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATS--YLPSQVS 281 (391)
T ss_pred c--EeeeeeCCceeeEEEEEEECCCCCe-EEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhh--hcchhhh
Confidence 8 33555544331 12 5899999987 777566677776655432221100 00000000001100000 112211
Q ss_pred -------cccccccCCce--eEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 161 -------YLFSLKFPTAV--TEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 161 -------~~~~l~~~~~i--~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.|...+++..- +.++|++....+.+.+...+|.++.|+++.
T Consensus 282 ~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 282 SVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 22333344333 456666544446788889999999999875
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.83 E-value=0.71 Score=41.03 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 788 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 788 ~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
.+|...|++++|+++|.+ ++.+.+.++.+..++...+..+|..+...|++++|.+.+.
T Consensus 13 ~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEK------ALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHTT-HHHHHHHHHH------HHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555666666666543 5555555543333455677788888888888888887763
No 134
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.83 E-value=4.5 Score=53.64 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=96.0
Q ss_pred HHHHHhcCChhhhc---hhHHHhhhcHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhcc-----CCcHhH
Q 001314 701 YLQELESMPPLLMR---YTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKM 766 (1102)
Q Consensus 701 fL~~L~~le~~~rr---~~Id~~LkryekAl~hl~~~g~~------~~deAie~~~~~~~Ly~~AL~L~-----~d~~~~ 766 (1102)
|.+.+...|..+.. ..+....|+|++|+.++.++... ++..+. ...+. +.++.|++++ .+|...
T Consensus 499 ~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~-all~~-Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 499 WLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAAN-TAQAA-GNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCCccH
Confidence 44444444544332 23334588999999998765321 111122 22343 6777777766 233322
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHcCC-------HHHHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHH
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQ 838 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~-------~ekAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~ 838 (1102)
.+...++..+...+++++|..+|.++-. +-..-.++.+.|++++|+....+ +..+++. ......++..|.
T Consensus 577 -~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-~~a~~nLG~aL~ 654 (987)
T PRK09782 577 -ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-SNYQAALGYALW 654 (987)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 2222334444455888888888877642 11222456667777777655433 2223322 246777888888
Q ss_pred HcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHHHH
Q 001314 839 ALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 839 ~~g~~~eAa~i~l~yl----gD~---e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
+.|++.+|..+|.+-+ +++ .....+|.+.+++++|.....
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888887765432 122 233445666777777765433
No 135
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.78 E-value=1.5 Score=50.14 Aligned_cols=111 Identities=14% Similarity=0.258 Sum_probs=75.0
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcce---eeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrh---geF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
.+|.|.|+|..++++.- .+..|.++|----.- --|.++ -+.-|.|++|+++|=... -.-..-||
T Consensus 199 tsmqwn~dgt~l~tAS~-----gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt---~davfrlw 265 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASF-----GSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAAT---CDAVFRLW 265 (445)
T ss_pred eEEEEcCCCCEEeeccc-----CcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEec---ccceeeee
Confidence 36899999998888752 356888898653211 112222 377899999999886543 12357899
Q ss_pred EcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeee
Q 001314 80 FFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTA 131 (1102)
Q Consensus 80 t~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~ 131 (1102)
..+|-.|-+++.+-.+ .+ +-.|+|+...-|+. ..|.-..|...|+-.
T Consensus 266 ~e~q~wt~erw~lgsg---rvqtacWspcGsfLLf~--~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 266 QENQSWTKERWILGSG---RVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGE 313 (445)
T ss_pred hhcccceecceeccCC---ceeeeeecCCCCEEEEE--EcCCceEEEEeecCC
Confidence 9999988777765432 23 46999998874443 467777777777543
No 136
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=92.77 E-value=1 Score=53.77 Aligned_cols=106 Identities=15% Similarity=0.018 Sum_probs=52.6
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCCcH------HHHHHHHHHHhcchHHHHhcc-C----CcHhHHHHHHHHHHHHhcc
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDSYH------ADCLNLMKKYAQLFPLGLKLI-T----DPAKMEQVLEAWADHLSDV 780 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~~~------deAie~~~~~~~Ly~~AL~L~-~----d~~~~~~i~~~yAd~L~~~ 780 (1102)
..+..+...-|+|+.|.+++.+...... -.+-+..... +.++.|.+++ . .|.....+...+|+.+...
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 4445666667777777777766532111 1122223343 5556655555 1 1221122333356666666
Q ss_pred cChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhh
Q 001314 781 KCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 781 ~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
+++++|...+...-. ..-+..+|...|+|+++..+...
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666555421 12333555666666666555443
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.77 E-value=1.5 Score=51.92 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=99.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
++.|+-..+|..++. + ++..|+++||||- -|+..+-+..+.. .+.+-++.|.-|=++ ......+|.||+..-
T Consensus 39 s~~w~~~n~lvvas~----~-gdk~~~~~~K~g~-~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~-sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASM----A-GDKVMRIKEKDGK-TPEVPRVRKLTGD-NAFCVACASQSLYEI-SGGQSGCVKIWDLRA 110 (673)
T ss_pred eeeccccceEEEeec----C-CceeEEEecccCC-CCccceeeccccc-hHHHHhhhhcceeee-ccCcCceeeehhhHH
Confidence 578988776555443 1 3678999999998 6665443322111 222333334334433 235577999998762
Q ss_pred ceEEEEEEEEeccCC--C-ceEEecCCCCceEEEEeeCCcEEEEEEEEeee----ecCC-------------cEEEEEeC
Q 001314 84 NHWYLKYEIRYLRRD--G-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----VMEN-------------STALVIDG 143 (1102)
Q Consensus 84 YHWYLKqei~~~~~~--~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~----~~d~-------------~~vaVIDG 143 (1102)
|-.+++.... . +++...-.+-+ ++-+.-+|.++++...-... ..+. ....+|-|
T Consensus 111 -----kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 111 -----KLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred -----HHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence 4444554432 2 34544433334 55556667777666541100 0010 01122223
Q ss_pred CeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 144 SKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 144 ~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
++=-+|=....-+-|-|.+.+ .-.+|-..|+|+++++. .|+-|=-|+.|.+|....
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCeEEEEeccCCCcccchhh-hccCCcCcceecCCccc-eEEEecccceEEEeeccc
Confidence 332333333344566676665 34566779999999875 445556688899998643
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.76 E-value=5.5 Score=51.07 Aligned_cols=150 Identities=14% Similarity=0.165 Sum_probs=86.9
Q ss_pred hhcHHHHHHHHHHc---CC--CcHHHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHHHHHHHhcccChHHHHHHHH
Q 001314 721 LQRFENALKHIVSM---GD--SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYF 791 (1102)
Q Consensus 721 LkryekAl~hl~~~---g~--~~~deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~ 791 (1102)
.|.+++|++.|-+. .+ -+...-|-.+-.+.+.|..|+.++ .......+++...|.-+...++|..|..+|+
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 45566666665432 11 011122333434447788888887 1222344677788888999999999999999
Q ss_pred HcCC-------H---HHHHHHHHHcCCHHHHHHHH---hhcCCChH----HHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 792 CCSS-------L---EKAMKAYRASGNWSGVLTVA---GLLKLGKD----EVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 792 ~ag~-------~---ekAl~~y~~ag~W~~al~lA---~~l~~~~~----el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
.|-. . ---.++|..+|.|++|...+ ..+..... .+..+..++|+......+ ....++. .-.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~-~a~ 782 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVL-EAV 782 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHH-HHH
Confidence 8821 1 12337788889999986543 33322221 223345555655544333 3334443 336
Q ss_pred CCHHHHHHHHHHhcCHHH
Q 001314 855 GDVTNGISLLIDARDWEE 872 (1102)
Q Consensus 855 gD~e~AI~~y~~~~~W~e 872 (1102)
++.+.|+++++..+...+
T Consensus 783 ~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 778888888887765554
No 139
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=92.71 E-value=18 Score=40.55 Aligned_cols=201 Identities=16% Similarity=0.154 Sum_probs=116.3
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCC-cceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNG-LrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
.-.|.||+.-+..+ +..+.+++.++ .....|.-.. ..|..++.|+|+.-+.--- -...|.||++---
T Consensus 70 ~~s~dg~~alS~sw------D~~lrlWDl~~g~~t~~f~GH~---~dVlsva~s~dn~qivSGS---rDkTiklwnt~g~ 137 (315)
T KOG0279|consen 70 VLSSDGNFALSASW------DGTLRLWDLATGESTRRFVGHT---KDVLSVAFSTDNRQIVSGS---RDKTIKLWNTLGV 137 (315)
T ss_pred EEccCCceEEeccc------cceEEEEEecCCcEEEEEEecC---CceEEEEecCCCceeecCC---Ccceeeeeeeccc
Confidence 34567776666553 46889999987 6666776653 2478888888887554221 1237999999877
Q ss_pred eEEEEEEEEecc-CCC-ceEEecCCCCceEEEEe--eCCcEEEEEEEEeee--------ecCCc---EEEE-EeCC----
Q 001314 85 HWYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWT--LDGQITTYNFIWTTA--------VMENS---TALV-IDGS---- 144 (1102)
Q Consensus 85 HWYLKqei~~~~-~~~-~~~~W~~e~pl~L~i~t--~~g~~~~~~~~w~~~--------~~d~~---~vaV-IDG~---- 144 (1102)
. |.++.-.. ++= .+++|+|.... ..|+. .++.+-+ |+.. ....+ +|+| .||.
T Consensus 138 c---k~t~~~~~~~~WVscvrfsP~~~~-p~Ivs~s~DktvKv----Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 138 C---KYTIHEDSHREWVSCVRFSPNESN-PIIVSASWDKTVKV----WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred E---EEEEecCCCcCcEEEEEEcCCCCC-cEEEEccCCceEEE----EccCCcchhhccccccccEEEEEECCCCCEEec
Confidence 6 77776554 333 46999998532 22222 2233333 3322 01112 3333 4443
Q ss_pred -----eEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeec
Q 001314 145 -----KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACI 219 (1102)
Q Consensus 145 -----~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~ 219 (1102)
.+++=.|+..- +.+.+.-..+|+.++|+|+. --+++ ....++-+|++.......++...... +.
T Consensus 210 Ggkdg~~~LwdL~~~k-----~lysl~a~~~v~sl~fspnr--ywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g---~s 278 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGK-----NLYSLEAFDIVNSLCFSPNR--YWLCA-ATATSIKIWDLESKAVVEELKLDGIG---PS 278 (315)
T ss_pred CCCCceEEEEEccCCc-----eeEeccCCCeEeeEEecCCc--eeEee-ccCCceEEEeccchhhhhhccccccc---cc
Confidence 34555555532 25566667789999998853 23444 56667999998776555544432221 11
Q ss_pred cccccCceEEEEEecCce
Q 001314 220 SETAFGSVIHLIWLGSHL 237 (1102)
Q Consensus 220 ~~~~~~~~~~~~w~~~~~ 237 (1102)
++...-....++|..++.
T Consensus 279 ~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 279 SKAGDPICLSLAWSADGQ 296 (315)
T ss_pred cccCCcEEEEEEEcCCCc
Confidence 112222456778987664
No 140
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.60 E-value=1.6 Score=52.78 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=60.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee-cCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~-L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..+|.|.|+.||-+... +.+..|..++..|-+...++ .++ ......|++||+-||+....+....|.+|...
T Consensus 222 ~p~wSPDG~~La~~s~~---~g~~~L~~~dl~tg~~~~lt~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFE---NRKAEIFVQDIYTQVREKVTSFPG----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CceECCCCCEEEEEEec---CCCcEEEEEECCCCCeEEecCCCC----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 46999999999987643 13568888887764433222 221 24468999999999987644434457777665
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
.-.+ ..+...........|+|.... |++
T Consensus 295 tg~~---~~lt~~~~~~~~p~wSpDG~~-I~f 322 (448)
T PRK04792 295 TKAL---TRITRHRAIDTEPSWHPDGKS-LIF 322 (448)
T ss_pred CCCe---EECccCCCCccceEECCCCCE-EEE
Confidence 5431 122111111134789887654 444
No 141
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.58 E-value=9.9 Score=41.91 Aligned_cols=157 Identities=22% Similarity=0.304 Sum_probs=99.7
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcce---eeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrh---geF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
.|+=-|.+..||+.. .+.|.+|+=|--.- -.|..+. ..|....+-+||.-+.-- .+...+.+|+
T Consensus 45 rLeiTpdk~~LAaa~-------~qhvRlyD~~S~np~Pv~t~e~h~---kNVtaVgF~~dgrWMyTg---seDgt~kIWd 111 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAG-------NQHVRLYDLNSNNPNPVATFEGHT---KNVTAVGFQCDGRWMYTG---SEDGTVKIWD 111 (311)
T ss_pred eEEEcCCcchhhhcc-------CCeeEEEEccCCCCCceeEEeccC---CceEEEEEeecCeEEEec---CCCceEEEEe
Confidence 355567777777764 45788888664322 2343331 247788888888876643 2345899999
Q ss_pred cccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 81 FSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
+-| |--.-.|....+ .++.=||...- |+.++.+|++.+ |+.-. -.+....||-|
T Consensus 112 lR~----~~~qR~~~~~spVn~vvlhpnQte-Lis~dqsg~irv----WDl~~----------------~~c~~~liPe~ 166 (311)
T KOG0315|consen 112 LRS----LSCQRNYQHNSPVNTVVLHPNQTE-LISGDQSGNIRV----WDLGE----------------NSCTHELIPED 166 (311)
T ss_pred ccC----cccchhccCCCCcceEEecCCcce-EEeecCCCcEEE----EEccC----------------CccccccCCCC
Confidence 988 323333433344 35777886554 888899999865 65321 11234445654
Q ss_pred ccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccc
Q 001314 160 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 208 (1102)
Q Consensus 160 M~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l 208 (1102)
- .+|..++..++++ .++++-.+|+.++|++.......++
T Consensus 167 ~--------~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 167 D--------TSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred C--------cceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccc
Confidence 3 5666677766654 7888899999999998764444333
No 142
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=92.57 E-value=2.1 Score=50.91 Aligned_cols=105 Identities=12% Similarity=-0.012 Sum_probs=65.1
Q ss_pred hchhHHHhhhcHHHHHHHHHHcCCC------cHHHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhccc
Q 001314 713 MRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 781 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~~g~~------~~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~ 781 (1102)
.+..+...-|+|++|.+.+.+.... ++-.+-++.... +.++.|.+.+ .+|+......-.-|+.....+
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-GDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 4455665568888888888865321 112223333555 7788887777 233332222222378888888
Q ss_pred ChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhh
Q 001314 782 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 782 ~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
++++|...+.+.-. ..-..++|...|+|+++..+...
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888888877632 23556778888889888855444
No 143
>PRK12370 invasion protein regulator; Provisional
Probab=92.55 E-value=3.1 Score=51.77 Aligned_cols=109 Identities=10% Similarity=-0.088 Sum_probs=50.7
Q ss_pred HHHHHHHHhcccChHHHHHHHHHcCC----HHHH----HHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHc
Q 001314 770 LEAWADHLSDVKCFEDAATTYFCCSS----LEKA----MKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQAL 840 (1102)
Q Consensus 770 ~~~yAd~L~~~~~~eeAa~~Y~~ag~----~ekA----l~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~ 840 (1102)
+...|.-+...+++++|..+|.+|-. ...| -.+|...|++++|+....+ +.+++.... ....++..+...
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~ 419 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhc
Confidence 33455555566666666666666411 1111 2344556666666554433 112221111 111122233345
Q ss_pred CChHHHHHHHHHhcC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 001314 841 GKPGEAAKIALDYCG-----DVT---NGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 841 g~~~eAa~i~l~ylg-----D~e---~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
|+|++|...+.+.+. ++. ....+|...+++++|.....+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667766666544321 111 123444566667777665543
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.50 E-value=1.7 Score=55.51 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHHhcccChHHHHHHHHHcCCH--------HHHHHHHHHcCCHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHcCC
Q 001314 773 WADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL--KLGKDEVAKLAQELCEELQALGK 842 (1102)
Q Consensus 773 yAd~L~~~~~~eeAa~~Y~~ag~~--------ekAl~~y~~ag~W~~al~lA~~l--~~~~~el~~l~~~lA~~L~~~g~ 842 (1102)
+|--|..+++|.+|..+|.+--.- -.-..||..+|+|..|+.+=... ...+....++..-||..+-+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 445555566666666555542110 01123555555555554432111 00011123455555555555555
Q ss_pred hHHHHHHH
Q 001314 843 PGEAAKIA 850 (1102)
Q Consensus 843 ~~eAa~i~ 850 (1102)
+.+|-+.+
T Consensus 732 ~~eak~~l 739 (1018)
T KOG2002|consen 732 LQEAKEAL 739 (1018)
T ss_pred HHHHHHHH
Confidence 55554443
No 145
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.44 E-value=37 Score=42.62 Aligned_cols=157 Identities=15% Similarity=0.272 Sum_probs=85.0
Q ss_pred CCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC---ccccceeeeeecCCCCeEEEEEeeCCCCeEEE
Q 001314 2 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 78 (1102)
Q Consensus 2 e~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~---~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqL 78 (1102)
++++.|.|.|..++++. + ..|+.-+ +.-|+..+|. ..+..+..++=.||+.+|-...+ +..+.+
T Consensus 22 GG~~~~s~nG~~L~t~~----~---d~Vi~id---v~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~r---s~llrv 88 (775)
T KOG0319|consen 22 GGPVAWSSNGQHLYTAC----G---DRVIIID---VATGSIALPSGSNEDEDEITALALTPDEEVLVTASR---SQLLRV 88 (775)
T ss_pred CCceeECCCCCEEEEec----C---ceEEEEE---ccCCceecccCCccchhhhheeeecCCccEEEEeec---cceEEE
Confidence 57899999999999986 1 1232222 1122222552 12346889999999999987763 445777
Q ss_pred EEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCC
Q 001314 79 CFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 157 (1102)
Q Consensus 79 Wt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VP 157 (1102)
|...--. +-.++......+ +.+.+||+..+ |..+...|.+.+ |++ ++..... .|+.
T Consensus 89 ~~L~tgk--~irswKa~He~Pvi~ma~~~~g~L-lAtggaD~~v~V----Wdi-----------~~~~~th-~fkG---- 145 (775)
T KOG0319|consen 89 WSLPTGK--LIRSWKAIHEAPVITMAFDPTGTL-LATGGADGRVKV----WDI-----------KNGYCTH-SFKG---- 145 (775)
T ss_pred EEcccch--HhHhHhhccCCCeEEEEEcCCCce-EEeccccceEEE----EEe-----------eCCEEEE-EecC----
Confidence 7543321 000000000112 34566666633 444433343332 332 2222211 2333
Q ss_pred CcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCC
Q 001314 158 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 203 (1102)
Q Consensus 158 PPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~ 203 (1102)
++..|..+.|.+......++.=-.|+++.+|++.+..
T Consensus 146 ---------~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 146 ---------HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred ---------CCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 5667777888776554445555678889999987543
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.41 E-value=0.19 Score=45.76 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 801 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 801 ~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
.||.+.|+|++|+.+.++.+.++.. ......+|.-+.+.|+|++|..++.
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLDPSN-PDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5566666666666666543222212 2233345666667777777766654
No 147
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.28 E-value=1.8 Score=51.72 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=61.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|+.||.+... +.+..|..++-.+-....++ . ....+....|++||+-||+.........|.+|...+
T Consensus 203 ~p~wSpDG~~la~~s~~---~~~~~l~~~~l~~g~~~~l~--~-~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFE---QKRPRIFVQNLDTGRREQIT--N-FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred eeeECCCCCEEEEEEcC---CCCCEEEEEECCCCCEEEcc--C-CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 45899999999987633 13567888876543322221 1 111355689999999999877544445688888877
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-.+ +.+.-.........|+|.... +++
T Consensus 277 ~~~---~~lt~~~~~~~~~~~spDg~~-i~f 303 (430)
T PRK00178 277 RQL---SRVTNHPAIDTEPFWGKDGRT-LYF 303 (430)
T ss_pred CCe---EEcccCCCCcCCeEECCCCCE-EEE
Confidence 663 222211111134789886554 444
No 148
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.04 E-value=3 Score=50.14 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=56.4
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc-
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF- 81 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~- 81 (1102)
...+|.|.|..||.+.... ...+|..++-+|-....++ .....+....|++||+.|+.... .....+||.+
T Consensus 246 ~~~~~SPDG~~La~~~~~~---g~~~I~~~d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d 317 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKT---GSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVN 317 (429)
T ss_pred CCeEECCCCCEEEEEEcCC---CCcEEEEEECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEE
Confidence 3579999999999775331 2457888887764332221 11235778999999999887752 2234566643
Q ss_pred -ccceEEEEEEEEeccCCCceEEecCCCCc
Q 001314 82 -SNNHWYLKYEIRYLRRDGIRFMWHPTKPL 110 (1102)
Q Consensus 82 -~NYHWYLKqei~~~~~~~~~~~W~~e~pl 110 (1102)
.+-. .+.+...........|+|....
T Consensus 318 ~~~g~---~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 318 INGGA---PQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred CCCCC---eEEeecCCCCccCEEECCCCCE
Confidence 3322 1233222111124678876655
No 149
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=1.7 Score=47.66 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~ 874 (1102)
.++.+-+..+++.++-..|..++- .+-..|++++.|.||-
T Consensus 131 qlYqralavve~~dr~~ma~el~g-------k~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 131 QLYQRALAVVEEDDRDQMAFELYG-------KCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhccchHHHHHHHHH-------HhhhHhhhhHHhhHHH
Confidence 344444444444444444443331 2334455555555553
No 150
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=91.98 E-value=2.4 Score=52.33 Aligned_cols=180 Identities=18% Similarity=0.190 Sum_probs=109.1
Q ss_pred eeecc-CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC-------ccccceeeeeecCCCCe--EEEEEeeCCCC
Q 001314 5 LEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-------QIDSTVELLKWNCMSDL--LAAVVRFEEYD 74 (1102)
Q Consensus 5 LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~-------~~~~~v~~L~Wn~DS~i--LAv~~~~~~~~ 74 (1102)
+.-.| ..+++|+-. ....|++|. +|++.-++|. .....|..+.|..+-.- +.... ...
T Consensus 248 ~~f~p~~p~ll~gG~------y~GqV~lWD---~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s---sDG 315 (555)
T KOG1587|consen 248 LKFCPFDPNLLAGGC------YNGQVVLWD---LRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS---SDG 315 (555)
T ss_pred EEeccCCcceEEeec------cCceEEEEE---ccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---cCC
Confidence 44556 677777754 245788886 4444443332 12346889999775433 33222 134
Q ss_pred eEEEEEcccceEEEEEEEEeccC--------C---C-ceEEecCCCCceEEEEeeCCcEEE-EEEEEeeee---------
Q 001314 75 SVKICFFSNNHWYLKYEIRYLRR--------D---G-IRFMWHPTKPLQLICWTLDGQITT-YNFIWTTAV--------- 132 (1102)
Q Consensus 75 ~vqLWt~~NYHWYLKqei~~~~~--------~---~-~~~~W~~e~pl~L~i~t~~g~~~~-~~~~w~~~~--------- 132 (1102)
.|..|.+.+.| +.+++..... . + +++.++++.|.+++|||..|.+.. .........
T Consensus 316 ~i~~W~~~~l~--~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 316 SICSWDTDMLS--LPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred cEeeeeccccc--cchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 79999999988 4444433211 1 1 458999999999999999998876 443332221
Q ss_pred --cCCcEEEEEe----CCeEEeccC-------CCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 133 --MENSTALVID----GSKILVTPL-------SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 133 --~d~~~vaVID----G~~l~lTp~-------r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
..+|.|.+|+ +..+.+|-. ...+.=+|+..++-..+ .+.+||+|+... -.|+++..+|.|.+|++
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrp-avF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRP-AVFATVDGDGNLDIWDL 471 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCc-eEEEEEcCCCceehhhh
Confidence 1344555444 222333222 12224567766655443 388999998653 35677788999999997
Q ss_pred C
Q 001314 200 P 200 (1102)
Q Consensus 200 ~ 200 (1102)
.
T Consensus 472 l 472 (555)
T KOG1587|consen 472 L 472 (555)
T ss_pred h
Confidence 4
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=91.90 E-value=2.2 Score=49.16 Aligned_cols=154 Identities=19% Similarity=0.356 Sum_probs=95.0
Q ss_pred ceeeccC-CCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPS-GANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPs-GnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
-|.|.|+ -+.+|+.. .+..|.+++ |+|-+..-..... .+.-|+-++||-+-.+||-- ++...+.+|+.
T Consensus 262 DLqWSptE~~vfaScS------~DgsIrIWDiRs~~~~~~~~~kA-h~sDVNVISWnr~~~lLasG---~DdGt~~iwDL 331 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCS------CDGSIRIWDIRSGPKKAAVSTKA-HNSDVNVISWNRREPLLASG---GDDGTLSIWDL 331 (440)
T ss_pred hhccCCccCceEEeee------cCceEEEEEecCCCccceeEeec-cCCceeeEEccCCcceeeec---CCCceEEEEEh
Confidence 4889994 55788765 467888887 7775444333322 12358889999999988854 45568999999
Q ss_pred ccceEEEEEEEE-ec-cCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeec-CCcEEE--EEeCCeEEeccCCCCC
Q 001314 82 SNNHWYLKYEIR-YL-RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM-ENSTAL--VIDGSKILVTPLSLSL 155 (1102)
Q Consensus 82 ~NYHWYLKqei~-~~-~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~-d~~~va--VIDG~~l~lTp~r~a~ 155 (1102)
-++.= +|-+. |. .+.+ .++.|||-....+++...+.++.+ |+.++- |.--.. -+.| .+-
T Consensus 332 R~~~~--~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti----WDlsvE~D~ee~~~~a~~~---------L~d 396 (440)
T KOG0302|consen 332 RQFKS--GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI----WDLSVEADEEEIDQEAAEG---------LQD 396 (440)
T ss_pred hhccC--CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE----EEeeccCChhhhccccccc---------hhc
Confidence 88762 11111 11 1233 469999988888888777788886 555422 111111 1222 124
Q ss_pred CCCcccccc--------cccCCceeEEEEecCCCC
Q 001314 156 MPPPMYLFS--------LKFPTAVTEMAFYSKSSK 182 (1102)
Q Consensus 156 VPPPM~~~~--------l~~~~~i~~vaf~~~~~~ 182 (1102)
+||-+-|.. +..--.|+.+..+.....
T Consensus 397 lPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 397 LPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 688887755 444555666666665555
No 152
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.78 E-value=28 Score=39.78 Aligned_cols=113 Identities=7% Similarity=0.007 Sum_probs=62.3
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--ccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
..+++.|.|++++++.. ....|..|+-++ .|.++... +.......+.+++|+..|.+.. ...+.|.+|.
T Consensus 38 ~~l~~spd~~~lyv~~~-----~~~~i~~~~~~~--~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~--~~~~~v~v~~ 108 (330)
T PRK11028 38 QPMVISPDKRHLYVGVR-----PEFRVLSYRIAD--DGALTFAAESPLPGSPTHISTDHQGRFLFSAS--YNANCVSVSP 108 (330)
T ss_pred ccEEECCCCCEEEEEEC-----CCCcEEEEEECC--CCceEEeeeecCCCCceEEEECCCCCEEEEEE--cCCCeEEEEE
Confidence 35788999998766542 235677777642 12222111 1112456899999999998875 3357899998
Q ss_pred cccce--EEEEEEEEeccCCCceEEecCCCCceEEEEe-eCCcEEEEEE
Q 001314 81 FSNNH--WYLKYEIRYLRRDGIRFMWHPTKPLQLICWT-LDGQITTYNF 126 (1102)
Q Consensus 81 ~~NYH--WYLKqei~~~~~~~~~~~W~~e~pl~L~i~t-~~g~~~~~~~ 126 (1102)
+...- .-..+.+. +......+.++|.... |++.. ..+.+.++++
T Consensus 109 ~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 109 LDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTL 155 (330)
T ss_pred ECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEE
Confidence 75321 00112111 1111234677886654 44423 2355666665
No 153
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.72 E-value=4.9 Score=47.79 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCC--HHHHHHHHH--HhcCHHHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALDYCGD--VTNGISLLI--DARDWEEALRVAF 878 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ylgD--~e~AI~~y~--~~~~W~eA~rLa~ 878 (1102)
++...+|..+...|++.+|..++.+-+.. -+..+.+|. ..++.++|+..+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 46667778888888888888877554432 123333333 4466667766654
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.63 E-value=1.2 Score=44.08 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 785 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 785 eAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+.+-+|...|+.++|+..|.++ +. .+++.+........++..+...|++++|..++-+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~A------l~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRA------LA----AGLSGADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH------HH----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567888889999999998863 22 3455656667888999999999999999999755
No 155
>PRK01742 tolB translocation protein TolB; Provisional
Probab=91.59 E-value=10 Score=45.52 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEE
Q 001314 11 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 90 (1102)
Q Consensus 11 GnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKq 90 (1102)
|..||-+....++..+..|.+.+-.|-..- .|.. ....+....||+||+.||..-.......|.+|....-. .+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~--~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~---~~ 241 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQF--IVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA---RK 241 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCce--Eecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc---eE
Confidence 456665544322212456777776665422 2221 12358899999999999876433334579999875533 12
Q ss_pred EEEeccCCCceEEecCCCCceEEEEe-eCCcEEEEE
Q 001314 91 EIRYLRRDGIRFMWHPTKPLQLICWT-LDGQITTYN 125 (1102)
Q Consensus 91 ei~~~~~~~~~~~W~~e~pl~L~i~t-~~g~~~~~~ 125 (1102)
.+.........+.|+|.... |++.. .+|...+|.
T Consensus 242 ~l~~~~g~~~~~~wSPDG~~-La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 242 VVASFRGHNGAPAFSPDGSR-LAFASSKDGVLNIYV 276 (429)
T ss_pred EEecCCCccCceeECCCCCE-EEEEEecCCcEEEEE
Confidence 23211111135899997654 55533 466655443
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=91.59 E-value=3.9 Score=48.75 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=81.1
Q ss_pred eeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEee
Q 001314 52 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTT 130 (1102)
Q Consensus 52 v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~ 130 (1102)
..+|+=-|+++.|+-. .+...|.||.-. |-|+.---.++ .+..+||.. +++++|..|..+..|
T Consensus 371 lwgla~hps~~q~~T~---gqdk~v~lW~~~------k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d----- 434 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTC---GQDKHVRLWNDH------KLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLD----- 434 (626)
T ss_pred eeeEEcCCChhheeec---cCcceEEEccCC------ceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEe-----
Confidence 3445555666655543 233469999833 33332212333 568999998 699999988765433
Q ss_pred eecCCcEEEEEeCCe-EEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCcccccc
Q 001314 131 AVMENSTALVIDGSK-ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLE 209 (1102)
Q Consensus 131 ~~~d~~~vaVIDG~~-l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~ 209 (1102)
-.+ .++| .+. . .++++.|+|++++ +.+|+-..|+.|++|..+.....
T Consensus 435 ------------~e~~~lv~-~~~------------d-~~~ls~v~ysp~G--~~lAvgs~d~~iyiy~Vs~~g~~---- 482 (626)
T KOG2106|consen 435 ------------TETQDLVT-IHT------------D-NEQLSVVRYSPDG--AFLAVGSHDNHIYIYRVSANGRK---- 482 (626)
T ss_pred ------------cccceeEE-EEe------------c-CCceEEEEEcCCC--CEEEEecCCCeEEEEEECCCCcE----
Confidence 221 1111 111 2 5678999999876 47888899999999998643221
Q ss_pred CCceeeeeeccccccCceEEEEEecCceEEE
Q 001314 210 GTEFVVEACISETAFGSVIHLIWLGSHLLLS 240 (1102)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~ 240 (1102)
.+... ......+.|+.|-.|+..+.
T Consensus 483 ---y~r~~---k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 483 ---YSRVG---KCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred ---EEEee---eecCceeEEeeecCCCceEE
Confidence 11111 11114588999988776554
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=2.3 Score=54.85 Aligned_cols=139 Identities=14% Similarity=0.178 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHH
Q 001314 724 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMK 801 (1102)
Q Consensus 724 yekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~ 801 (1102)
++.++.-=.-.|+ +.+|++..... +....|+-|. ..++-+..+..+|..-+.+ +.--++|....+--+.+-
T Consensus 490 ~d~~Is~alitgd--~~~aV~~cl~~-~~~a~AliiA~~gg~el~~~t~~~Y~~k~~~----k~s~li~a~v~~d~~~~v 562 (1049)
T KOG0307|consen 490 IDGLISEALITGD--FKSAVELCLEA-NKMADALIIAHAGGTELLESTRDKYLAKSNS----KLSRLIYAMVNRDLDDYV 562 (1049)
T ss_pred HHHHHHHHHHhcc--HHHHHHHHHhh-hHHHHHHHHHhcCCHHHHHHHHHHHHHHhCC----hHHHHHHHHHhhhHHHHH
Confidence 4444432222355 67777777665 6777777666 4555555555555544433 344455555544323333
Q ss_pred HHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHH-HHHHHHhcCCHHHHHHHHHHhcCHH
Q 001314 802 AYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA-AKIALDYCGDVTNGISLLIDARDWE 871 (1102)
Q Consensus 802 ~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eA-a~i~l~ylgD~e~AI~~y~~~~~W~ 871 (1102)
.-.....|++++...-.+- ..++..+|+..|+++|...|.+..+ ..+|+. .|.+++.+.+..+...-+
T Consensus 563 e~~~~k~Wke~la~i~t~~-~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~-agsv~k~v~~w~~~~~~~ 631 (1049)
T KOG0307|consen 563 ETCEVKQWKETLAAICTYA-QTDEFSELCDMLGDRLENAGDLTSAAILCYIC-AGSVDKLVEIWLKALDLE 631 (1049)
T ss_pred hhcchhhHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhccchhhhhhHHhhh-ccChhhhHHHHHHhcccc
Confidence 3333446999988877763 3368899999999999999966554 455544 899999999999887765
No 158
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.50 E-value=5.1 Score=45.11 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred Cceeecc-CCCeEEEEeeccCCCCCCeEEEEe--cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 3 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 3 ~~LsWrP-sGnlIA~~qr~~~~~~~~~VvFFE--RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
+.|+..| +.+++|+... +.+|..|| ++|+--+.=. ...+..|....|+-||+-.+.-- + ...+++|
T Consensus 31 S~l~FSP~~~~~~~A~SW------D~tVR~wevq~~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g~-~--Dk~~k~w 99 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSW------DGTVRIWEVQNSGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSGG-C--DKQAKLW 99 (347)
T ss_pred heeEeccccCceEEeccc------CCceEEEEEecCCcccchhh--hccCCCeEEEEEccCCceEEeec-c--CCceEEE
Confidence 4688999 8888866553 34666665 4455444100 11234699999999998777653 1 2369999
Q ss_pred EcccceEEEEEEEEeccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCC
Q 001314 80 FFSNNHWYLKYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 157 (1102)
Q Consensus 80 t~~NYHWYLKqei~~~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VP 157 (1102)
+...- |...++..+. + ++.|=+-....+.+ |. .|+ ++|+.=..|. |
T Consensus 100 DL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~-TG---------SWD--------------KTlKfWD~R~---~ 147 (347)
T KOG0647|consen 100 DLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLV-TG---------SWD--------------KTLKFWDTRS---S 147 (347)
T ss_pred EccCC-----CeeeeeecccceeEEEEecCCCcceeE-ec---------ccc--------------cceeecccCC---C
Confidence 98775 4555565555 3 47886655544444 32 152 4566666675 6
Q ss_pred CcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 158 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 158 PPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
-||.. +.+|+++-+. +.......+-++++.|.+|+|..
T Consensus 148 ~pv~t--~~LPeRvYa~----Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 148 NPVAT--LQLPERVYAA----DVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred Ceeee--eeccceeeeh----hccCceeEEEecCCcEEEEEcCC
Confidence 77764 5678887332 33334455558999999999954
No 159
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.40 E-value=3.7 Score=50.04 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=105.3
Q ss_pred HHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHc
Q 001314 655 AEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 734 (1102)
Q Consensus 655 ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~ 734 (1102)
-|+||. .-+|.+.=|+-||..=++++|.-+|++++---| |. .||+ .....
T Consensus 630 ~e~AL~---~s~D~d~rFelal~lgrl~iA~~la~e~~s~~K------------------w~---~Lg~------~al~~ 679 (794)
T KOG0276|consen 630 KEQALE---LSTDPDQRFELALKLGRLDIAFDLAVEANSEVK------------------WR---QLGD------AALSA 679 (794)
T ss_pred hHhhhh---cCCChhhhhhhhhhcCcHHHHHHHHHhhcchHH------------------HH---HHHH------HHhhc
Confidence 467776 458999999999999999999988887643221 11 1222 22344
Q ss_pred CCCcHHHHHHHHHHHhcchHHHHhcc--CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHH
Q 001314 735 GDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGV 812 (1102)
Q Consensus 735 g~~~~deAie~~~~~~~Ly~~AL~L~--~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~a 812 (1102)
|+ +..|.|.+.+. +.|.--|=|+ ... ++.+...|.--..++++.-|...|...|+++.+++..+..+..-+|
T Consensus 680 ~~--l~lA~EC~~~a-~d~~~LlLl~t~~g~---~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 680 GE--LPLASECFLRA-RDLGSLLLLYTSSGN---AEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred cc--chhHHHHHHhh-cchhhhhhhhhhcCC---hhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 54 66777777765 7776555555 222 2334456777788999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHH
Q 001314 813 LTVAGLLKLGKDEVAKLAQELCEELQ 838 (1102)
Q Consensus 813 l~lA~~l~~~~~el~~l~~~lA~~L~ 838 (1102)
--+|+.+- ++++.++...--+.|.
T Consensus 754 al~ArtYl--ps~vs~iv~~wk~~l~ 777 (794)
T KOG0276|consen 754 ALFARTYL--PSQVSRIVELWKEDLS 777 (794)
T ss_pred HHHHhhhC--hHHHHHHHHHHHHHhh
Confidence 99998873 3466666666666665
No 160
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=34 Score=44.45 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCC---HHHHHHHHHHcCCHHHHHH---HHhhcC-C---Ch------------HH
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSS---LEKAMKAYRASGNWSGVLT---VAGLLK-L---GK------------DE 825 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~---~ekAl~~y~~ag~W~~al~---lA~~l~-~---~~------------~e 825 (1102)
.+|...|.---+.+.-.+|...|++|.+ |.+-++...++|.|+++.. +|++-. . +. .|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHH
Confidence 5666666666678889999999999964 6778888899999999854 444311 1 11 01
Q ss_pred HH--------HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 001314 826 VA--------KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 826 l~--------~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
+. .-....++++.+.|.|+.|--+| ....++..-...++..++|.-|+.-|.+
T Consensus 1185 lE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y-~~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1185 LEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY-SNVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 12345678888888888776665 3344444444444444444444443333
No 161
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=10 Score=47.99 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcC------CHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASG------NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV 857 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag------~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~ 857 (1102)
.-=...|.+.++.+|-.+--.+.. +.+.|+.+++..+. .+.|..+|..+. +++-+-.++++-+|++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sny-----l~~a~~LA~k~~---~he~vl~ille~~~ny 506 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNY-----LDEAELLATKFK---KHEWVLDILLEDLHNY 506 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhCh-----HHHHHHHHHHhc---cCHHHHHHHHHHhcCH
Confidence 334556777777766444333333 37778888776542 245555565543 4677778888888888
Q ss_pred HHHHHHHHHhcCHHHHHHHHHhcCChhhH
Q 001314 858 TNGISLLIDARDWEEALRVAFMHRREDLI 886 (1102)
Q Consensus 858 e~AI~~y~~~~~W~eA~rLa~~h~~~dL~ 886 (1102)
++|++ |++.--.++++|...++.+ .|+
T Consensus 507 ~eAl~-yi~slp~~e~l~~l~kyGk-~Ll 533 (933)
T KOG2114|consen 507 EEALR-YISSLPISELLRTLNKYGK-ILL 533 (933)
T ss_pred HHHHH-HHhcCCHHHHHHHHHHHHH-HHH
Confidence 88887 4555568888888877764 444
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.12 E-value=4.5 Score=44.42 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=95.2
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+-|--+-+-|-++. +..+|.+|+ |-|-+--...++. .|..|+-+.||+||.|.. ...|.+|..++
T Consensus 149 v~wc~eD~~iLSSa------dd~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia~----gssV~Fwdaks 214 (334)
T KOG0278|consen 149 VLWCHEDKCILSSA------DDKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIAY----GSSVKFWDAKS 214 (334)
T ss_pred EEEeccCceEEeec------cCCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEec----CceeEEecccc
Confidence 34666666666654 356899998 4566666555554 699999999999999976 78999999999
Q ss_pred ceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccc
Q 001314 84 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 162 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~ 162 (1102)
+. -||. +...-. .+-.-||.+-. ++++.. -...|.|.|.+.. +.+. +
T Consensus 215 f~-~lKs---~k~P~nV~SASL~P~k~~-fVaGge--d~~~~kfDy~Tge-Ei~~-------------~----------- 262 (334)
T KOG0278|consen 215 FG-LLKS---YKMPCNVESASLHPKKEF-FVAGGE--DFKVYKFDYNTGE-EIGS-------------Y----------- 262 (334)
T ss_pred cc-ceee---ccCccccccccccCCCce-EEecCc--ceEEEEEeccCCc-eeee-------------c-----------
Confidence 88 3443 111111 13466888832 444332 3455555555431 1111 1
Q ss_pred cccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 163 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 163 ~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.=.-..+|.+|.|+|+++- .+.=..||+|.||+...
T Consensus 263 -nkgh~gpVhcVrFSPdGE~--yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 263 -NKGHFGPVHCVRFSPDGEL--YASGSEDGTIRLWQTTP 298 (334)
T ss_pred -ccCCCCceEEEEECCCCce--eeccCCCceEEEEEecC
Confidence 1134678999999998763 33337889999998643
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.06 E-value=4.3 Score=48.20 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=101.0
Q ss_pred CCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc---eEE
Q 001314 11 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN---HWY 87 (1102)
Q Consensus 11 GnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY---HWY 87 (1102)
-.+||+.... ...|+-==+-|++--+|+.+. +..|.-|.++.-+.-|-++. .+...|.||++.-. |=.
T Consensus 133 DeyiAsvs~g-----Gdiiih~~~t~~~tt~f~~~s--gqsvRll~ys~skr~lL~~a--sd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 133 DEYIASVSDG-----GDIIIHGTKTKQKTTTFTIDS--GQSVRLLRYSPSKRFLLSIA--SDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred cceeEEeccC-----CcEEEEecccCccccceecCC--CCeEEEeecccccceeeEee--ccCCeEEEEeccCCCcccch
Confidence 3588887532 224555567888888999883 33578999999999998887 44568999998653 322
Q ss_pred EEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEE--------------eeeecCCcEEEEEeCCe--EEecc
Q 001314 88 LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW--------------TTAVMENSTALVIDGSK--ILVTP 150 (1102)
Q Consensus 88 LKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w--------------~~~~~d~~~vaVIDG~~--l~lTp 150 (1102)
+|+.- .+ --++++|.++.-|+-+--+-.+++|+..- .++.+++|++.++-..+ |....
T Consensus 204 ~~~Hs-----AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 204 SEAHS-----APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred hhhcc-----CCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 22211 11 12788998887454444456788888651 12245778777765443 44455
Q ss_pred CCCCCCCCcccccccccCCceeEEEEecCC
Q 001314 151 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 180 (1102)
Q Consensus 151 ~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~ 180 (1102)
+|. .|.|..-.. .++..|.+|||.++.
T Consensus 279 ~R~--~k~Pv~v~s-ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 279 MRS--TKAPVAVRS-AHDASVTRVAFQPSP 305 (673)
T ss_pred ccc--CCCCceEee-ecccceeEEEeeecc
Confidence 555 488887766 456679999998864
No 164
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=0.85 Score=49.92 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHh-----cCCHHHHHHHHHHh
Q 001314 826 VAKLAQELCEELQALGKPGEAAKIALDY-----CGDVTNGISLLIDA 867 (1102)
Q Consensus 826 l~~l~~~lA~~L~~~g~~~eAa~i~l~y-----lgD~e~AI~~y~~~ 867 (1102)
...++++-.+...+.|...-|+..+.+- -.+|+.|+++|.++
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRA 136 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3345555555555666665555443220 14567777776554
No 165
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=90.97 E-value=1.8 Score=49.17 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=59.5
Q ss_pred HHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHH
Q 001314 789 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISL 863 (1102)
Q Consensus 789 ~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~-----~eAa~i~l~ylgD~e~AI~~ 863 (1102)
-+...|+.++|+++....++|-.|+-||... +++...++..++...-...++. .-=..+|.-+.|+.+.+|+-
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~--g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSL--GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 4677899999999999999999999999875 4655666666555554333332 11233444457999999988
Q ss_pred HHHh------------cCHHHHHHHHHhcCChh
Q 001314 864 LIDA------------RDWEEALRVAFMHRRED 884 (1102)
Q Consensus 864 y~~~------------~~W~eA~rLa~~h~~~d 884 (1102)
++.. .+|.+.+.++-.+..++
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 8765 48999998877765443
No 166
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.92 E-value=4.9 Score=50.64 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=90.2
Q ss_pred hhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHh--cchHHHHh----cc-C---CcH--hHHHHHHHHHHHHhcccC
Q 001314 715 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYA--QLFPLGLK----LI-T---DPA--KMEQVLEAWADHLSDVKC 782 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~--~Ly~~AL~----L~-~---d~~--~~~~i~~~yAd~L~~~~~ 782 (1102)
|.+-..-|+||.|++.|.+.. ...-+|+-+..-.. +|....-. ++ . ++. .+..+...|...+ ...+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~-~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F-~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE-FNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF-EITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHhhc-cCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH-hccC
Confidence 477778899999999999832 23466666654320 22222111 22 1 111 2346677777755 4678
Q ss_pred hHHHHHHHHHcCCHHH------HHHH----HHHcCCHHHHHHH-----------Hhh------cCCChHHHHHHHHHHHH
Q 001314 783 FEDAATTYFCCSSLEK------AMKA----YRASGNWSGVLTV-----------AGL------LKLGKDEVAKLAQELCE 835 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~ek------Al~~----y~~ag~W~~al~l-----------A~~------l~~~~~el~~l~~~lA~ 835 (1102)
..+|..+|........ ..+| -...++|...+-- ..+ +...+++++++....|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 8999999988866432 2222 2455667666621 112 22345688999999999
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 001314 836 ELQALGKPGEAAKIALDYCGDVTNGISLLIDA 867 (1102)
Q Consensus 836 ~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~ 867 (1102)
...+.|++.+|..+|. .+++++.+++++++.
T Consensus 423 ~~e~~g~~~dAi~Ly~-La~~~d~vl~lln~~ 453 (613)
T PF04097_consen 423 EAEERGRFEDAILLYH-LAEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHCT-HHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 9999999999999984 599999999999976
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=5.7 Score=46.93 Aligned_cols=139 Identities=16% Similarity=0.268 Sum_probs=84.3
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEE--EEEEEEe-----ccCCC---------ceEEecCCCCceEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY--LKYEIRY-----LRRDG---------IRFMWHPTKPLQLIC 114 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWY--LKqei~~-----~~~~~---------~~~~W~~e~pl~L~i 114 (1102)
.+..++=+.||..+|+.- ....|.|-++....|- +|+|=.. .+... --..|+-..+..++.
T Consensus 305 ~~e~FeVShd~~fia~~G---~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAG---NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred hhheeEecCCCCeEEEcc---cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 477889999999999873 4567888888887773 3332211 11000 002344444444444
Q ss_pred EeeCCcEEEEEEE------EeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEE
Q 001314 115 WTLDGQITTYNFI------WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 188 (1102)
Q Consensus 115 ~t~~g~~~~~~~~------w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~v 188 (1102)
|+-.|.+....++ |--.+||.|+|-+-||+..... . -|-|+... +.+-..|+.+.|+++.. |.|+
T Consensus 382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s----~-~PkPik~~-dNLtt~Itsl~Fn~d~q---iLAi 452 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS----T-NPKPIKTV-DNLTTAITSLQFNHDAQ---ILAI 452 (514)
T ss_pred EeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc----C-CCCchhhh-hhhheeeeeeeeCcchh---hhhh
Confidence 4444444333333 3333678899999999877543 2 28887654 35666899999988754 2333
Q ss_pred ---EeCCceEEEecCC
Q 001314 189 ---LSDGCLCVVDLPA 201 (1102)
Q Consensus 189 ---l~~~~l~l~~~~~ 201 (1102)
..++.|-|..+|.
T Consensus 453 aS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPS 468 (514)
T ss_pred hhhccccceEEEeccc
Confidence 3456677777765
No 168
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.72 E-value=4.1 Score=51.65 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
...+...=|+-+.+.|.|++|+++|..||+|++|++...++- .+++.--..-....+.+..++..+.+.+...+-+.+
T Consensus 621 ~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L--S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~ 698 (835)
T KOG2168|consen 621 LQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL--SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSA 698 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcch
Confidence 456777788999999999999999999999999998876532 122211111112345677899999999987655433
Q ss_pred H---HHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 001314 846 A---AKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 880 (1102)
Q Consensus 846 A---a~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h 880 (1102)
- .... -+=|+-.+-+.| ..++|++|+++....
T Consensus 699 ~~~~~t~~--lLl~~~~~f~~y-~~~~~e~aL~~le~l 733 (835)
T KOG2168|consen 699 KVVVKTLS--LLLDLVSFFDLY-HNGEWEEALSILEHL 733 (835)
T ss_pred hhHHHHHH--HHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 2 1111 134555555555 456799999987753
No 169
>PRK01029 tolB translocation protein TolB; Provisional
Probab=90.62 E-value=3.7 Score=49.37 Aligned_cols=101 Identities=11% Similarity=0.173 Sum_probs=58.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecC--CcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN--GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
..+|.|.|..||.+..+. ....|-.+.-+ |-....+ .. ....+....|++||+.||..........|.+|..
T Consensus 285 ~p~wSPDG~~Laf~s~~~---g~~~ly~~~~~~~g~~~~~l--t~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKD---GRPRIYIMQIDPEGQSPRLL--TK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CeEECCCCCEEEEEECCC---CCceEEEEECcccccceEEe--cc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 579999999999876432 23455444433 2111111 11 1124567899999999998764433457888887
Q ss_pred ccceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 82 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
.+-. .+.+..+........|+|..-. |++
T Consensus 359 ~~g~---~~~Lt~~~~~~~~p~wSpDG~~-L~f 387 (428)
T PRK01029 359 ATGR---DYQLTTSPENKESPSWAIDSLH-LVY 387 (428)
T ss_pred CCCC---eEEccCCCCCccceEECCCCCE-EEE
Confidence 7665 2233221111134789886554 443
No 170
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.54 E-value=13 Score=45.99 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=120.0
Q ss_pred chhHHHhhhcHHHHHHHHHHcCC-CcHHHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHH
Q 001314 714 RYTIDLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 787 (1102)
Q Consensus 714 r~~Id~~LkryekAl~hl~~~g~-~~~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa 787 (1102)
++.|-.--.-|+.||+-|--.-. .-++.-+.++..| .+=.-++..| .+|+. .+.|-+||...+++.+|+
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~----~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEA----REEYIEYLAKSDRLDEAA 189 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHH----HHHHHHHHHhccchHHHH
Confidence 35555555568888887654322 2268888889998 8888888877 35655 456899999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHcCC--HHHHHHHHhhcCC-----------------ChHHHHHHHHHHHHHHHHcCChHHHHH
Q 001314 788 TTYFCCSSLEKAMKAYRASGN--WSGVLTVAGLLKL-----------------GKDEVAKLAQELCEELQALGKPGEAAK 848 (1102)
Q Consensus 788 ~~Y~~ag~~ekAl~~y~~ag~--W~~al~lA~~l~~-----------------~~~el~~l~~~lA~~L~~~g~~~eAa~ 848 (1102)
.-|..--+-++-+..+.+... |.+...+..+.+. -.+++--|-..||++....|+++.|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999998887777766655443 8888777665431 124455566777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 849 IALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLL 927 (1102)
Q Consensus 849 i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~~r~~ 927 (1102)
+|.+ ||+.-..-++|..-+.-=.+. =|.-..+.++-+.. ...=+++...+.-+..|+..|=.+|..
T Consensus 270 vyee-------ai~~v~tvrDFt~ifd~Ya~F-----EE~~~~~~me~a~~-~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 270 VYEE-------AIQTVMTVRDFTQIFDAYAQF-----EESCVAAKMELADE-ESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHH-------HHHhheehhhHHHHHHHHHHH-----HHHHHHHHHhhhhh-cccChhhhhhHHHHHHHHHHHHhccch
Confidence 7633 333333333333332211110 01111112220000 000145666788888888888877733
No 171
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=4.9 Score=51.08 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=43.7
Q ss_pred HHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhH
Q 001314 835 EELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 893 (1102)
Q Consensus 835 ~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~ 893 (1102)
+.+.+.|+..++..+. .-.+|++.-|..++..++|++|+.....+..++|.=...|.+
T Consensus 512 ~l~~~~~~~e~ll~fA-~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~L 569 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFA-NLIKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPEL 569 (911)
T ss_pred HHHHHccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHH
Confidence 4455678888877764 447999999999999999999999887777777654444443
No 172
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.39 E-value=5.1 Score=49.40 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=57.6
Q ss_pred hhcHHHHHHHHHHcCC--CcHHHHHHHHHHHhcchH---------HHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHH
Q 001314 721 LQRFENALKHIVSMGD--SYHADCLNLMKKYAQLFP---------LGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATT 789 (1102)
Q Consensus 721 LkryekAl~hl~~~g~--~~~deAie~~~~~~~Ly~---------~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~ 789 (1102)
|..|++|.+.|..... ..+-+.+|++... ||- .|-+|........+-|...|..+.-+++|+.|.++
T Consensus 366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~--LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~ 443 (638)
T KOG1126|consen 366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTT--LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKC 443 (638)
T ss_pred HHHHHHHHHHHHHHHhhccccccchhHHHHH--HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHH
Confidence 5688999988876532 2234556665432 332 23333333344567899999999999999999999
Q ss_pred HHHcCC---------------------HHHHHHHHHHcC
Q 001314 790 YFCCSS---------------------LEKAMKAYRASG 807 (1102)
Q Consensus 790 Y~~ag~---------------------~ekAl~~y~~ag 807 (1102)
|++|-. +++|+.+|+.|-
T Consensus 444 f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 444 FKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 999854 677777776653
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.34 E-value=16 Score=41.79 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=52.5
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecC--Ccce----eeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLER----SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN--GLrh----geF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~v 76 (1102)
+.+++.|.|.++.++.. ....|.+|.-+ |.-. ..+.++ .+.....+.|++||..|.|.. ...+.|
T Consensus 129 ~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~--~g~~p~~~~~~pdg~~lyv~~--~~~~~v 199 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTV--EGAGPRHMVFHPNQQYAYCVN--ELNSSV 199 (330)
T ss_pred cEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecC--CCCCCceEEECCCCCEEEEEe--cCCCEE
Confidence 34578899988866553 24567777654 3221 112222 233467899999999999975 446889
Q ss_pred EEEEccc--ceEEEEEEEE
Q 001314 77 KICFFSN--NHWYLKYEIR 93 (1102)
Q Consensus 77 qLWt~~N--YHWYLKqei~ 93 (1102)
.+|.... -.+-+.|.+.
T Consensus 200 ~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEEeCCCCCEEEEEEEe
Confidence 9999863 2554556554
No 174
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=90.18 E-value=36 Score=39.21 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCC--Cc----HHHHHHHHHHHhcchHHHH
Q 001314 684 AAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD--SY----HADCLNLMKKYAQLFPLGL 757 (1102)
Q Consensus 684 al~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~--~~----~deAie~~~~~~~Ly~~AL 757 (1102)
|+-|=|.--..|. ++|=|++..+-+.-+.|.. -|=||.|...|...-+ +. ....+..+..- +.|.+|+
T Consensus 88 AIRiHQ~L~~spd--lT~~qr~lAl~qL~~Dym~---aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAI 161 (389)
T COG2956 88 AIRIHQTLLESPD--LTFEQRLLALQQLGRDYMA---AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAI 161 (389)
T ss_pred HHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHH
Confidence 3334444435554 6787888877777777776 4677888888877643 11 24455667787 9999999
Q ss_pred hcc-----CCcHh----HHHHHHHHHHHHhcccChHHHHHHHHHcCCH-HHHH-------HHHHHcCCHHHHHHHHhh-c
Q 001314 758 KLI-----TDPAK----MEQVLEAWADHLSDVKCFEDAATTYFCCSSL-EKAM-------KAYRASGNWSGVLTVAGL-L 819 (1102)
Q Consensus 758 ~L~-----~d~~~----~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~-ekAl-------~~y~~ag~W~~al~lA~~-l 819 (1102)
+.. -+++. ....+..+|+-+....+++.|.....+|=.- .+.+ +.+..-|+++.|+..-.. +
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 876 23333 3466778888888888888887766655110 0111 112223333333222111 1
Q ss_pred CCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 820 KLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 820 ~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
..+++=+.+++..+.+...+.|+.++....+
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2234444455555555555566665555443
No 175
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.13 E-value=9.3 Score=43.41 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=75.0
Q ss_pred ceeeeeecCCCCeEEEEEeeC-----CCCeEEEEEcccceEEEEEEEEeccCC---CceE-EecCCCCceEEE-EeeCCc
Q 001314 51 TVELLKWNCMSDLLAAVVRFE-----EYDSVKICFFSNNHWYLKYEIRYLRRD---GIRF-MWHPTKPLQLIC-WTLDGQ 120 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~-----~~~~vqLWt~~NYHWYLKqei~~~~~~---~~~~-~W~~e~pl~L~i-~t~~g~ 120 (1102)
.|.+|..+ |+|.||.++.+ -.+.|.+|+..+.= ||--.+.... +++. +=+.++.+ |++ +...|+
T Consensus 87 ~i~el~f~--~~I~~V~l~r~riVvvl~~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~~~k~~-LafPg~k~Gq 160 (346)
T KOG2111|consen 87 CIIELSFN--SEIKAVKLRRDRIVVVLENKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPTSNKSL-LAFPGFKTGQ 160 (346)
T ss_pred EEEEEEec--cceeeEEEcCCeEEEEecCeEEEEEcCCCh---hheeeeecccCCCceEeecCCCCceE-EEcCCCccce
Confidence 35555555 45666655432 25689999999433 3433333222 3543 32333333 444 555689
Q ss_pred EEEEEEEEeee-------ecCCc--EEEE-EeC----------CeEEe---------ccCCCCCCCCcccccccccCCce
Q 001314 121 ITTYNFIWTTA-------VMENS--TALV-IDG----------SKILV---------TPLSLSLMPPPMYLFSLKFPTAV 171 (1102)
Q Consensus 121 ~~~~~~~w~~~-------~~d~~--~vaV-IDG----------~~l~l---------Tp~r~a~VPPPM~~~~l~~~~~i 171 (1102)
+.+.++.|... ++|.. .|+. -|| .-|.+ --||+. .-.+.|
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-----------~d~A~i 229 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-----------VDRADI 229 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-----------CchheE
Confidence 99999987654 22222 1111 222 22222 224443 235678
Q ss_pred eEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 172 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 172 ~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
-++|||++.+ -+||...+|+|++|.+.+.
T Consensus 230 y~iaFSp~~s--~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSS--WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCcc--EEEEEcCCCeEEEEEeecC
Confidence 8999999765 4677667789999998653
No 176
>PRK12370 invasion protein regulator; Provisional
Probab=90.09 E-value=5.2 Score=49.78 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=62.4
Q ss_pred cchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCC---------HHHHHHHHHHcCCHHHHHHHH
Q 001314 751 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS---------LEKAMKAYRASGNWSGVLTVA 816 (1102)
Q Consensus 751 ~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~---------~ekAl~~y~~ag~W~~al~lA 816 (1102)
+.|++|++.| .+|... ..+..+|.-+...|++++|...|+++-. +..+ .++...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~-~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISA-DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL-WITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH-HHHHhccCHHHHHHHH
Confidence 4555555554 133322 3455678888888999999999988721 1112 2355578888888776
Q ss_pred hhcC-CChHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 001314 817 GLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALDY 853 (1102)
Q Consensus 817 ~~l~-~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y 853 (1102)
.+.- ..+.........+|..+...|++++|...+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5531 111111234566778888889999998887654
No 177
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.07 E-value=6.1 Score=47.48 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=56.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|+.||.+.... +..+|-.++-.|=....++ . .........|++||.-|++.........|..+....
T Consensus 252 ~~~~SpDG~~l~~~~s~~---g~~~Iy~~d~~~g~~~~lt--~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 252 APSFSPDGRRLALTLSRD---GNPEIYVMDLGSRQLTRLT--N-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CceECCCCCEEEEEEeCC---CCceEEEEECCCCCeEECc--c-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 578999999888654321 3467888876553322221 1 112345789999999998875322223344444433
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-.+ +.+.+.........|+|.... +++
T Consensus 326 g~~---~~lt~~g~~~~~~~~SpDG~~-Ia~ 352 (433)
T PRK04922 326 GSA---ERLTFQGNYNARASVSPDGKK-IAM 352 (433)
T ss_pred CCe---EEeecCCCCccCEEECCCCCE-EEE
Confidence 331 223332211134789887665 444
No 178
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=3 Score=52.65 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=54.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
.||..|+-=||-++- ....|-.|+ |-|---.+|+= .+..|.++.+-++..+.--- .+.=.|.+|.-+
T Consensus 14 glsFHP~rPwILtsl------HsG~IQlWDYRM~tli~rFde---HdGpVRgv~FH~~qplFVSG---GDDykIkVWnYk 81 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSL------HSGVIQLWDYRMGTLIDRFDE---HDGPVRGVDFHPTQPLFVSG---GDDYKIKVWNYK 81 (1202)
T ss_pred ceecCCCCCEEEEee------cCceeeeehhhhhhHHhhhhc---cCCccceeeecCCCCeEEec---CCccEEEEEecc
Confidence 478889888888865 234566665 44444444432 24479999999998876532 222279999655
Q ss_pred cceEEEEEEEEecc---CCCc-eEEecCCCCc
Q 001314 83 NNHWYLKYEIRYLR---RDGI-RFMWHPTKPL 110 (1102)
Q Consensus 83 NYHWYLKqei~~~~---~~~~-~~~W~~e~pl 110 (1102)
+-+ -+ |.. -|-+ ++.||+|.|.
T Consensus 82 ~rr-----cl-ftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 82 TRR-----CL-FTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred cce-----eh-hhhccccceeEEeeccCCCce
Confidence 433 11 221 1223 3788999997
No 179
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=89.96 E-value=4.9 Score=43.52 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=12.6
Q ss_pred hchhHHHhhhcHHHHHHHHHH
Q 001314 713 MRYTIDLRLQRFENALKHIVS 733 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~ 733 (1102)
.........|+|++|+..|.+
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~ 58 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEA 58 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333444456777777777764
No 180
>PRK00178 tolB translocation protein TolB; Provisional
Probab=89.96 E-value=6.5 Score=46.97 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=58.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|+.||.+.... +..+|-.++-.|-....++- .........|++||+-|++.........|.+|....
T Consensus 247 ~~~~SpDG~~la~~~~~~---g~~~Iy~~d~~~~~~~~lt~---~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKD---GNPEIYVMDLASRQLSRVTN---HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred CeEECCCCCEEEEEEccC---CCceEEEEECCCCCeEEccc---CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 579999999998665331 24678777766533322221 122355678999999988875333334566666544
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-.+ +.+.+.........|+|.... +++
T Consensus 321 g~~---~~lt~~~~~~~~~~~Spdg~~-i~~ 347 (430)
T PRK00178 321 GRA---ERVTFVGNYNARPRLSADGKT-LVM 347 (430)
T ss_pred CCE---EEeecCCCCccceEECCCCCE-EEE
Confidence 442 233332211123578887654 444
No 181
>PRK04792 tolB translocation protein TolB; Provisional
Probab=89.92 E-value=6.6 Score=47.50 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=56.7
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
...+|.|.|+.||.+... +...+|..++-.|-.-...+ . ....+....|++||.-|++.........|.++...
T Consensus 265 ~~~~wSPDG~~La~~~~~---~g~~~Iy~~dl~tg~~~~lt--~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSK---DGQPEIYVVDIATKALTRIT--R-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred CCeeECCCCCEEEEEEeC---CCCeEEEEEECCCCCeEECc--c-CCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 357999999999876533 13567888876553322211 1 11235678999999999887532222334444443
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
.-.+ +.+.+.........|+|..-. |++
T Consensus 339 ~g~~---~~Lt~~g~~~~~~~~SpDG~~-l~~ 366 (448)
T PRK04792 339 SGKV---SRLTFEGEQNLGGSITPDGRS-MIM 366 (448)
T ss_pred CCCE---EEEecCCCCCcCeeECCCCCE-EEE
Confidence 3332 223322211123578776654 444
No 182
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=89.85 E-value=21 Score=42.17 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=59.8
Q ss_pred CCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEE
Q 001314 11 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 90 (1102)
Q Consensus 11 GnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKq 90 (1102)
|+.||-....+ .+....|...+..|-....+.-+ ...+....|++||+.||..........|.+|...+-.. .
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~l~~~---~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~ 227 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYDGANPQTITRS---REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---E 227 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCCCCCCEEeecC---CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---E
Confidence 45555554332 12345677777666554444332 12477889999999999876444446799998876542 2
Q ss_pred EEEeccCCCceEEecCCCCceEEE-EeeCCcEEEEE
Q 001314 91 EIRYLRRDGIRFMWHPTKPLQLIC-WTLDGQITTYN 125 (1102)
Q Consensus 91 ei~~~~~~~~~~~W~~e~pl~L~i-~t~~g~~~~~~ 125 (1102)
.+........++.|+|.... |++ ...+|+..+|.
T Consensus 228 ~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 228 KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCCccceEECCCCCE-EEEEECCCCCccEEE
Confidence 22211111134789987654 544 33345434433
No 183
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.75 E-value=19 Score=39.47 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=82.0
Q ss_pred ecc-CCCeEEEEeecc----------------CCCCCCeEEEEecC-CcceeeeecCCccccceeeeeecCCCCeEEEEE
Q 001314 7 WMP-SGANIAAVYDRK----------------SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 68 (1102)
Q Consensus 7 WrP-sGnlIA~~qr~~----------------~~~~~~~VvFFERN-GLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~ 68 (1102)
|.| .|.+|-+-.-.+ ..+.+.-|..|+=| |-.-..| ++ ...+|+.+.+|.+|+|++---
T Consensus 44 WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~--rg-H~aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF--RG-HLAQVNTVRFNEESSVVASGS 120 (307)
T ss_pred ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec--cc-ccceeeEEEecCcceEEEecc
Confidence 899 888887654322 11234567777766 4444444 22 245799999999999998532
Q ss_pred eeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEE
Q 001314 69 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 147 (1102)
Q Consensus 69 ~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~ 147 (1102)
-...|++|++-....-=-|.+. ...|++ ++.- ....+..++.+|+ +.
T Consensus 121 ---fD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v---~~heIvaGS~DGt-------------------------vR 168 (307)
T KOG0316|consen 121 ---FDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDV---AEHEIVAGSVDGT-------------------------VR 168 (307)
T ss_pred ---ccceeEEEEcccCCCCccchhh-hhcCceeEEEe---cccEEEeeccCCc-------------------------EE
Confidence 2347999988554311111111 011221 1100 0011222333344 44
Q ss_pred eccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 148 VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 148 lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.-.+|...+ |+.+ +..||++|.|++++ |+..+-.-+++|.+..-.+
T Consensus 169 tydiR~G~l---~sDy---~g~pit~vs~s~d~--nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 169 TYDIRKGTL---SSDY---FGHPITSVSFSKDG--NCSLASSLDSTLRLLDKET 214 (307)
T ss_pred EEEeeccee---ehhh---cCCcceeEEecCCC--CEEEEeeccceeeecccch
Confidence 444444322 2222 67799999999876 3445556678888776443
No 184
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.62 E-value=2.3 Score=54.11 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=67.2
Q ss_pred hhchhHHHhhhcHHHHHHHHHHc---CCCcHHHHHHH---HHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcc
Q 001314 712 LMRYTIDLRLQRFENALKHIVSM---GDSYHADCLNL---MKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 780 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~---g~~~~deAie~---~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~ 780 (1102)
+.-+.|-..+|||++|+.+|..+ .+++...-+.+ .++. +.+++|+..+ .+|+.. ......|.-|...
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~~-~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSSA-REILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHh
Confidence 34467888899999999999876 33333333333 3566 7899998877 344433 3344455555555
Q ss_pred cChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 781 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 781 ~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
|+|++|..+|.++- . ..+.+ ......+|..|...|+.++|...|..
T Consensus 168 g~~~~A~~~y~~~~-------------------~---~~p~~----~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 168 GQSEQADACFERLS-------------------R---QHPEF----ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred cchHHHHHHHHHHH-------------------h---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444444431 1 11111 24566677777777888777777643
No 185
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=9.1 Score=41.99 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHH-------HHHHHHHHHHhcccChHHHHHHHHHc-CC
Q 001314 724 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME-------QVLEAWADHLSDVKCFEDAATTYFCC-SS 795 (1102)
Q Consensus 724 yekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~-------~i~~~yAd~L~~~~~~eeAa~~Y~~a-g~ 795 (1102)
|-+|.....++|. ..|.|-.|+... +-|+++ ||++-- +|+...|++-+..+.+-+=+.+|+.- .+
T Consensus 57 flkaA~~h~k~~s-khDaat~YveA~-~cykk~-----~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d 129 (288)
T KOG1586|consen 57 FLKAADLHLKAGS-KHDAATTYVEAA-NCYKKV-----DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQD 129 (288)
T ss_pred HHHHHHHHHhcCC-chhHHHHHHHHH-HHhhcc-----ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHH
Confidence 3444444444543 235554444443 444332 343321 33333444444444444445555554 66
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 796 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 796 ~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+++||.+|..+++|=..-..-. --..-..++|..-.+.++|..|..+|.+
T Consensus 130 ~ekaI~~YE~Aae~yk~ees~s-------sANKC~lKvA~yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKGEESVS-------SANKCLLKVAQYAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHHHHHHHHHHHcchhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776633221110 0012333444444445566666666533
No 186
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=89.23 E-value=12 Score=49.91 Aligned_cols=160 Identities=8% Similarity=-0.081 Sum_probs=84.6
Q ss_pred hchhHHHhhhcHHHHHHHHHHcCCCc--HHHHHHHHHHHhcchHHHHhcc-----CCcHhHH---HHHHH-HHHH---Hh
Q 001314 713 MRYTIDLRLQRFENALKHIVSMGDSY--HADCLNLMKKYAQLFPLGLKLI-----TDPAKME---QVLEA-WADH---LS 778 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~~g~~~--~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~---~i~~~-yAd~---L~ 778 (1102)
.-+.+...+|++++|+.++.++-.-. ......+.... +.|++|.+.| .+|..-. .+... -+.+ +.
T Consensus 83 ~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~ 161 (987)
T PRK09782 83 YLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLA 161 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhh
Confidence 33566778999999999988863211 12222333555 6788888777 2333322 22222 0011 22
Q ss_pred cccChHHHHHHHHHcCC-------HHHH-HHHHHHcCCHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHH-cCChHH
Q 001314 779 DVKCFEDAATTYFCCSS-------LEKA-MKAYRASGNWSGVLTVAGLL----KLGKDEVAKLAQELCEELQA-LGKPGE 845 (1102)
Q Consensus 779 ~~~~~eeAa~~Y~~ag~-------~ekA-l~~y~~ag~W~~al~lA~~l----~~~~~el~~l~~~lA~~L~~-~g~~~e 845 (1102)
...+..+|.. .+.-. ..-. .++|...++|++++.+..++ +++. +....+++.+.+ .++ ++
T Consensus 162 q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~----~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 162 QLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSA----AERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhhCH-HH
Confidence 2244455544 22211 1333 57788888898887766554 2232 234444444444 344 55
Q ss_pred HHHHHHHhcC-CHH---HHHHHHHHhcCHHHHHHHHHhc
Q 001314 846 AAKIALDYCG-DVT---NGISLLIDARDWEEALRVAFMH 880 (1102)
Q Consensus 846 Aa~i~l~ylg-D~e---~AI~~y~~~~~W~eA~rLa~~h 880 (1102)
|..++...+. |++ ..++.|++.++.++|.++....
T Consensus 235 a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 235 LLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5555433222 221 3456677777777777766654
No 187
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.07 E-value=46 Score=38.65 Aligned_cols=204 Identities=11% Similarity=0.071 Sum_probs=105.2
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCc--cee---eeecC--Cc-----cccceeeeeecCCCCeEEEEEeeCC
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERS---SFDIN--EQ-----IDSTVELLKWNCMSDLLAAVVRFEE 72 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGL--rhg---eF~L~--~~-----~~~~v~~L~Wn~DS~iLAv~~~~~~ 72 (1102)
++=-|+|.++.++... ...|.+|.-+-- --. .+..+ ++ .....-.+.|++|+..|.|.- ..
T Consensus 92 i~~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d--lG 164 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD--LG 164 (345)
T ss_dssp EEECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE--TT
T ss_pred EEEecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe--cC
Confidence 3445778877777532 457888877642 111 11111 11 123577899999999997764 56
Q ss_pred CCeEEEEEcccceEEE--EEEEEeccCCCc-eEEecCCCCceEEEEee-CCcEEEEEEEEeeeecCCcEEEEEeCCeEEe
Q 001314 73 YDSVKICFFSNNHWYL--KYEIRYLRRDGI-RFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILV 148 (1102)
Q Consensus 73 ~~~vqLWt~~NYHWYL--Kqei~~~~~~~~-~~~W~~e~pl~L~i~t~-~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~l 148 (1102)
.|+|.+|....-..-| ...+..+...+. .+.|||.... +++... ++.+..+++. .+.+....+..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~-----~~~g~~~~~~~----- 233 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYD-----PSDGSLTEIQT----- 233 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEE-----TTTTEEEEEEE-----
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeec-----ccCCceeEEEE-----
Confidence 8899999998766334 445555555554 5899997766 666443 3345544332 01121111110
Q ss_pred ccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceE
Q 001314 149 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVI 228 (1102)
Q Consensus 149 Tp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 228 (1102)
...+|+. ..-.....+|++++++. ..++.--..++|.+|+++..+.. ......+ ...-..+|
T Consensus 234 ----~~~~~~~-----~~~~~~~~~i~ispdg~-~lyvsnr~~~sI~vf~~d~~~g~-------l~~~~~~-~~~G~~Pr 295 (345)
T PF10282_consen 234 ----ISTLPEG-----FTGENAPAEIAISPDGR-FLYVSNRGSNSISVFDLDPATGT-------LTLVQTV-PTGGKFPR 295 (345)
T ss_dssp ----EESCETT-----SCSSSSEEEEEE-TTSS-EEEEEECTTTEEEEEEECTTTTT-------EEEEEEE-EESSSSEE
T ss_pred ----eeecccc-----ccccCCceeEEEecCCC-EEEEEeccCCEEEEEEEecCCCc-------eEEEEEE-eCCCCCcc
Confidence 1112221 11112566888888754 22232335567999998543211 1100000 11122489
Q ss_pred EEEEecCceEEEEEec
Q 001314 229 HLIWLGSHLLLSVSHH 244 (1102)
Q Consensus 229 ~~~w~~~~~ll~~~~~ 244 (1102)
++.+-.++..+.+...
T Consensus 296 ~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEE-TTSSEEEEEET
T ss_pred EEEEeCCCCEEEEEec
Confidence 9988777776666443
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=89.04 E-value=1.1 Score=53.00 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=69.2
Q ss_pred hHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHh
Q 001314 699 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 778 (1102)
Q Consensus 699 LpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~ 778 (1102)
+.++++|..-++. +... -.+.+..++. ..+|+.++.+. ++.. |.. -.++...|++|.
T Consensus 189 i~lle~L~~~~pe-----v~~~------LA~v~l~~~~--E~~AI~ll~~a-------L~~~--p~d-~~LL~~Qa~fLl 245 (395)
T PF09295_consen 189 IELLEKLRERDPE-----VAVL------LARVYLLMNE--EVEAIRLLNEA-------LKEN--PQD-SELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhcCCc-----HHHH------HHHHHHhcCc--HHHHHHHHHHH-------HHhC--CCC-HHHHHHHHHHHH
Confidence 6777887766533 2211 1233334443 45666655443 3222 211 567888999999
Q ss_pred cccChHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 001314 779 DVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLKLG 822 (1102)
Q Consensus 779 ~~~~~eeAa~~Y~~ag--------~~ekAl~~y~~ag~W~~al~lA~~l~~~ 822 (1102)
.+++|+.|..+..+|= -+....++|...|+|++|+.....+++.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999998883 3667889999999999999888777754
No 189
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.03 E-value=17 Score=44.85 Aligned_cols=57 Identities=28% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHHhcCHHHHHHHHHhcCChh
Q 001314 827 AKLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLIDARDWEEALRVAFMHRRED 884 (1102)
Q Consensus 827 ~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD--------~e~AI~~y~~~~~W~eA~rLa~~h~~~d 884 (1102)
.+++..-|..|...|++.+|+..+ +.+.. -..++..+.++++.++|..++....+.+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~-~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAM-DEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH-HHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 356666666666666666666654 32321 1345666666666666666666655433
No 190
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=19 Score=40.82 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=88.1
Q ss_pred eeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCc
Q 001314 41 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 120 (1102)
Q Consensus 41 eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~ 120 (1102)
+|.|+.|.+..|..+.+++.|+-|.|-. . ...+.||...-. =||+++..+..- +...+.+ ..+.+.++.+|+
T Consensus 5 ~~~l~npP~d~IS~v~f~~~~~~LLvss-W--DgslrlYdv~~~--~l~~~~~~~~pl-L~c~F~d--~~~~~~G~~dg~ 76 (323)
T KOG1036|consen 5 EFELENPPEDGISSVKFSPSSSDLLVSS-W--DGSLRLYDVPAN--SLKLKFKHGAPL-LDCAFAD--ESTIVTGGLDGQ 76 (323)
T ss_pred ccccCCCChhceeeEEEcCcCCcEEEEe-c--cCcEEEEeccch--hhhhheecCCce-eeeeccC--CceEEEeccCce
Confidence 6778876666799999998888887764 1 236888888776 577777653221 4567766 455677888899
Q ss_pred EEEEEEEEeee------------------------ecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEE
Q 001314 121 ITTYNFIWTTA------------------------VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAF 176 (1102)
Q Consensus 121 ~~~~~~~w~~~------------------------~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf 176 (1102)
+..||+.-... ++=++++.++|+.+ +-.-.....+..|.++.
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-------------~~~~~~~d~~kkVy~~~- 142 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-------------KVVVGTFDQGKKVYCMD- 142 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-------------cccccccccCceEEEEe-
Confidence 99888762111 12245666677664 11111222333554444
Q ss_pred ecCCCCceEEEEEeCCceEEEecCCCCcc
Q 001314 177 YSKSSKNCLAAILSDGCLCVVDLPAPDML 205 (1102)
Q Consensus 177 ~~~~~~~~~a~vl~~~~l~l~~~~~~~~~ 205 (1102)
-.+|.+.+-..+..+.+|.+...+.+
T Consensus 143 ---v~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 143 ---VSGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred ---ccCCEEEEeecCceEEEEEcccccch
Confidence 33345555588999999998765444
No 191
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=88.73 E-value=8.4 Score=46.98 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=45.4
Q ss_pred cccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEE
Q 001314 161 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 240 (1102)
Q Consensus 161 ~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~ 240 (1102)
+..++.++++|.++|++++.+ .+.+-..||++.+|+.....+- .. ...-.+.+++|-.++.+++
T Consensus 252 svtsipL~s~v~~ca~sp~E~--kLvlGC~DgSiiLyD~~~~~t~-------~~-------ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSED--KLVLGCEDGSIILYDTTRGVTL-------LA-------KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCcccc--eEEEEecCCeEEEEEcCCCeee-------ee-------eecccceEEEEcCCCcEEE
Confidence 556678899999999888654 4666689999999997432111 10 1112366789998888777
Q ss_pred EE
Q 001314 241 VS 242 (1102)
Q Consensus 241 ~~ 242 (1102)
|.
T Consensus 316 V~ 317 (545)
T PF11768_consen 316 VG 317 (545)
T ss_pred EE
Confidence 63
No 192
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=88.49 E-value=11 Score=46.10 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=93.7
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCC---cceeeeecCCccccceeeeeecCCCC--eEEEEEeeCCCCeEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNG---LERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKI 78 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNG---LrhgeF~L~~~~~~~v~~L~Wn~DS~--iLAv~~~~~~~~~vqL 78 (1102)
+||=-|+|+++|+-. ++..|.+||=-+ +||=+| +..|..++||+.++ ||||.+ ..++.|
T Consensus 405 ~iSvdp~G~wlasGs------dDGtvriWEi~TgRcvr~~~~------d~~I~~vaw~P~~~~~vLAvA~----~~~~~i 468 (733)
T KOG0650|consen 405 SISVDPSGEWLASGS------DDGTVRIWEIATGRCVRTVQF------DSEIRSVAWNPLSDLCVLAVAV----GECVLI 468 (733)
T ss_pred EEEecCCcceeeecC------CCCcEEEEEeecceEEEEEee------cceeEEEEecCCCCceeEEEEe----cCceEE
Confidence 567789999999954 467899999554 233333 34799999998876 688776 222322
Q ss_pred EEcccc---eEEEEEEEEecc---CCC--ceEEecCCC------CceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeC-
Q 001314 79 CFFSNN---HWYLKYEIRYLR---RDG--IRFMWHPTK------PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG- 143 (1102)
Q Consensus 79 Wt~~NY---HWYLKqei~~~~---~~~--~~~~W~~e~------pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG- 143 (1102)
-...-- +=|-.+++-+.. ... .-++|.+.. ..++.| +....+... .|.-. ....+++=+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~v--tWHrk---GDYlatV~~~ 542 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQV--TWHRK---GDYLATVMPD 542 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCcccee--eeecC---CceEEEeccC
Confidence 222111 111123332222 111 236897752 233444 333334333 34322 113333222
Q ss_pred ---CeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 144 ---SKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 144 ---~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
..|++-.|++.-+=.|+.- ....|.+|.|.+... ...|.+.+.+-+|++..
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~k----skG~vq~v~FHPs~p---~lfVaTq~~vRiYdL~k 596 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRK----SKGLVQRVKFHPSKP---YLFVATQRSVRIYDLSK 596 (733)
T ss_pred CCcceEEEEecccccccCchhh----cCCceeEEEecCCCc---eEEEEeccceEEEehhH
Confidence 4566666666654444432 345688999988643 35557889999999754
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=88.28 E-value=53 Score=37.62 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=91.7
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce-EEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH-WYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
.|.-.+||+|.+.+||-. +..-|.+|.+.|-. |-+-+++. ..+. ..+.|.|..+- +.-...+.+-+ .
T Consensus 12 pitchAwn~drt~iAv~~---~~~evhiy~~~~~~~w~~~htls--~Hd~~vtgvdWap~snr-Ivtcs~drnay----V 81 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSP---NNHEVHIYSMLGADLWEPAHTLS--EHDKIVTGVDWAPKSNR-IVTCSHDRNAY----V 81 (361)
T ss_pred ceeeeeecCCCceEEecc---CCceEEEEEecCCCCceeceehh--hhCcceeEEeecCCCCc-eeEccCCCCcc----c
Confidence 588899999999999974 45579999887776 97766653 2333 34899997765 33323222222 2
Q ss_pred EeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCcccc
Q 001314 128 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 207 (1102)
Q Consensus 128 w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~ 207 (1102)
|+.- +|.+=+=|+. =+.++-.+.+|-++|.. |-|++--+.+.+.++.+...++|=
T Consensus 82 w~~~----------~~~~Wkptlv------------LlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWW- 136 (361)
T KOG1523|consen 82 WTQP----------SGGTWKPTLV------------LLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWW- 136 (361)
T ss_pred cccC----------CCCeecccee------------EEEeccceeeEeecCcC--ceEEeccCccEEEEEEEeccccee-
Confidence 3220 3333332221 12355667788888854 557776677778887776666661
Q ss_pred ccCCceeeeeeccccccCceEEEEEecCceEEEE
Q 001314 208 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~ 241 (1102)
-.|+++ ......+..+.|...+.+++.
T Consensus 137 -VsKhik------kPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 137 -VSKHIK------KPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred -hhhhhC------CccccceeeeeccCCcceecc
Confidence 112221 122345778899998888774
No 194
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.14 E-value=12 Score=45.74 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=77.7
Q ss_pred ceeeeeecCC----C-CeEEEEEeeCCCCeEEEEEc-----ccceEEEEEEEEeccCCCc---eEEecCCCCceEEEEee
Q 001314 51 TVELLKWNCM----S-DLLAAVVRFEEYDSVKICFF-----SNNHWYLKYEIRYLRRDGI---RFMWHPTKPLQLICWTL 117 (1102)
Q Consensus 51 ~v~~L~Wn~D----S-~iLAv~~~~~~~~~vqLWt~-----~NYHWYLKqei~~~~~~~~---~~~W~~e~pl~L~i~t~ 117 (1102)
.|.+|.|.+- . .+|||+- +.-|.+|.. .-.+|...|.-+.+..-++ -..|||.++. |.|+|.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQH----kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQH----KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTA 132 (671)
T ss_pred eeeeeeecCcccCCCCceEEEec----cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCce-EEEEec
Confidence 7999999875 4 7899986 456888854 4789999998777554332 2789999999 888886
Q ss_pred CCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEE
Q 001314 118 DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 197 (1102)
Q Consensus 118 ~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~ 197 (1102)
..--..++.. .|++.|+.- ++...-|.|-++.+++.+ + +|--...|+.|
T Consensus 133 ~dvSV~~sV~-------------~d~srVkaD---------------i~~~G~IhCACWT~DG~R--L-VVAvGSsLHSy 181 (671)
T PF15390_consen 133 RDVSVLPSVH-------------CDSSRVKAD---------------IKTSGLIHCACWTKDGQR--L-VVAVGSSLHSY 181 (671)
T ss_pred CceeEeeeee-------------eCCceEEEe---------------ccCCceEEEEEecCcCCE--E-EEEeCCeEEEE
Confidence 4322222211 345555432 334556788888886654 2 33335589999
Q ss_pred ecCCCC
Q 001314 198 DLPAPD 203 (1102)
Q Consensus 198 ~~~~~~ 203 (1102)
-|++..
T Consensus 182 iWd~~q 187 (671)
T PF15390_consen 182 IWDSAQ 187 (671)
T ss_pred EecCch
Confidence 987643
No 195
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.00 E-value=19 Score=41.90 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=91.3
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCC----cce-eeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG----LER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNG----Lrh-geF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vq 77 (1102)
|.+.|.|.|+++.++... ...|.+|.-+. |.. ..+.+| .+.--..|.|++|+..+=|.. +..+.|.
T Consensus 147 H~v~~~pdg~~v~v~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~--~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~ 217 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDLG-----ADRVYVYDIDDDTGKLTPVDSIKVP--PGSGPRHLAFSPDGKYAYVVN--ELSNTVS 217 (345)
T ss_dssp EEEEE-TTSSEEEEEETT-----TTEEEEEEE-TTS-TEEEEEEEECS--TTSSEEEEEE-TTSSEEEEEE--TTTTEEE
T ss_pred eeEEECCCCCEEEEEecC-----CCEEEEEEEeCCCceEEEeeccccc--cCCCCcEEEEcCCcCEEEEec--CCCCcEE
Confidence 467899999988887632 34677776654 333 555555 344478899999999998886 5567888
Q ss_pred EEEcc--cceEEEEEEEEeccCCCceEEecCC-CCceEEEEeeCCcEEEEEEEEeeeecCCcEEEE--EeCCeEEeccCC
Q 001314 78 ICFFS--NNHWYLKYEIRYLRRDGIRFMWHPT-KPLQLICWTLDGQITTYNFIWTTAVMENSTALV--IDGSKILVTPLS 152 (1102)
Q Consensus 78 LWt~~--NYHWYLKqei~~~~~~~~~~~W~~e-~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaV--IDG~~l~lTp~r 152 (1102)
.+... +..|-..|.+..... .|..+ .|-.+++ +.+|+++ |..+.. .+.|+| ||+.+=.++...
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~i~i-spdg~~l-----yvsnr~-~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPE-----GFTGENAPAEIAI-SPDGRFL-----YVSNRG-SNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCET-----TSCSSSSEEEEEE--TTSSEE-----EEEECT-TTEEEEEEECTTTTTEEEEE
T ss_pred EEeecccCCceeEEEEeeeccc-----cccccCCceeEEE-ecCCCEE-----EEEecc-CCEEEEEEEecCCCceEEEE
Confidence 88888 777777777764322 12222 2333444 4445432 333322 234444 544422223221
Q ss_pred CCCCCCcccccccccCCceeEEEEecCCCCceEEEE-EeCCceEEEecCC
Q 001314 153 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPA 201 (1102)
Q Consensus 153 ~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~v-l~~~~l~l~~~~~ 201 (1102)
. +|- -.....+++|++++. .+.+. -..+++.+|+++.
T Consensus 286 ~--~~~--------~G~~Pr~~~~s~~g~--~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 286 T--VPT--------GGKFPRHFAFSPDGR--YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp E--EEE--------SSSSEEEEEE-TTSS--EEEEEETTTTEEEEEEEET
T ss_pred E--EeC--------CCCCccEEEEeCCCC--EEEEEecCCCeEEEEEEeC
Confidence 1 111 022357888877653 34333 3446788888753
No 196
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.90 E-value=4.1 Score=50.73 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=114.6
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC-----c---cccceeeeeecC-CCCeEEEEEeeCCCCe
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-----Q---IDSTVELLKWNC-MSDLLAAVVRFEEYDS 75 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~-----~---~~~~v~~L~Wn~-DS~iLAv~~~~~~~~~ 75 (1102)
++=-|+-|-|+.++|. -.+|.=|+.|+ |+++- . .-..+.+..|+. ++++||+. .....
T Consensus 45 Is~nr~~~qiv~AGrs-----~lklyai~~~~-----~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~---s~nG~ 111 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGRS-----LLKLYAINPND-----FSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC---STNGV 111 (839)
T ss_pred EeecCCcceeEEeccc-----ceeeEeeCccc-----CCcceeeecccccceeeehhhcccccchhhhheee---cCCCc
Confidence 3444556677777753 23455555553 33331 0 113477888974 67888875 34668
Q ss_pred EEEEEcccc--eEEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccC
Q 001314 76 VKICFFSNN--HWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPL 151 (1102)
Q Consensus 76 vqLWt~~NY--HWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~ 151 (1102)
|-.|..+-. . ||-..|..... .++.||+..|.-|.-|..+|.+-++|+.-+-+ ..|-+
T Consensus 112 i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---------------~~t~~ 173 (839)
T KOG0269|consen 112 ISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---------------KSTFR 173 (839)
T ss_pred EEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---------------ccccc
Confidence 999999862 2 34334544333 46999999999777788888777766553211 11212
Q ss_pred CCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEE
Q 001314 152 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLI 231 (1102)
Q Consensus 152 r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 231 (1102)
. -.++|.||.|++.. .|.|+++-.+|.|.+|.+--++.++ + .+ ....|.+.-+-
T Consensus 174 ~--------------nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~-~---k~-------~AH~GpV~c~n 227 (839)
T KOG0269|consen 174 S--------------NSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCE-K---KL-------TAHNGPVLCLN 227 (839)
T ss_pred c--------------cchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHH-H---Hh-------hcccCceEEEe
Confidence 1 45689999999965 5899999999999999987666553 1 01 13345555667
Q ss_pred EecCceEEEE
Q 001314 232 WLGSHLLLSV 241 (1102)
Q Consensus 232 w~~~~~ll~~ 241 (1102)
|-.++..++.
T Consensus 228 whPnr~~lAT 237 (839)
T KOG0269|consen 228 WHPNREWLAT 237 (839)
T ss_pred ecCCCceeee
Confidence 7776666664
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.79 E-value=9.9 Score=44.51 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=73.2
Q ss_pred hhHHHhhhcHHHHHHHHHHcCCCc------HHHHHHHHHHHhcchHHHHhcc---CC--cHhHHHHHHHHHHHHhcccCh
Q 001314 715 YTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI---TD--PAKMEQVLEAWADHLSDVKCF 783 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~g~~~------~deAie~~~~~~~Ly~~AL~L~---~d--~~~~~~i~~~yAd~L~~~~~~ 783 (1102)
..++.+-|+|.+|++++.+.-+.. +-.|.++.... +.++.|=.+. .. ++.-..+.-.-++-+-.++++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 567778899999999999864311 23455555666 7777776665 11 122334455567888899999
Q ss_pred HHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhc
Q 001314 784 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL 819 (1102)
Q Consensus 784 eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~l 819 (1102)
..|..--.++-. ..-|.++|.+.|+|+.++.+...+
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 988877666532 346789999999999999887654
No 198
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=12 Score=42.28 Aligned_cols=128 Identities=21% Similarity=0.262 Sum_probs=89.3
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEE--cccceEEEEEEEEeccCCCceEEe-cCCCCceEEEEeeCCcEEEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICF--FSNNHWYLKYEIRYLRRDGIRFMW-HPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt--~~NYHWYLKqei~~~~~~~~~~~W-~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
.|....||--|.-+|-.- ....|.+|. -..-.|-+..+++.....-..+.| |||-...++..+-++.+-+
T Consensus 15 lihdVs~D~~GRRmAtCS---sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i---- 87 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCS---SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI---- 87 (361)
T ss_pred eeeeeeecccCceeeecc---CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee----
Confidence 478889999999999753 345799998 334456678888876544457899 9999887887666666655
Q ss_pred EeeeecCCcEEEEEe--C-CeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCc
Q 001314 128 WTTAVMENSTALVID--G-SKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 204 (1102)
Q Consensus 128 w~~~~~d~~~vaVID--G-~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~ 204 (1102)
|+-... --+ | .=++.|.+.. -.+.|.||.|+|..-.-.+|++-.+|.|-+|+.+++-+
T Consensus 88 WEE~~~------~~~~~~~~Wv~~ttl~D-------------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 88 WEEQEK------SEEAHGRRWVRRTTLVD-------------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred eeeccc------ccccccceeEEEEEeec-------------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 433210 011 1 2245555543 34578999999987666789999999999999887543
No 199
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.52 E-value=73 Score=38.31 Aligned_cols=228 Identities=18% Similarity=0.149 Sum_probs=129.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--ccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
+.+.|..|.|+|+-- ...-|-.|+=+- .-.||. ..+.+|....+.++.+.+.+-. ++...+++|..
T Consensus 73 s~~fR~DG~LlaaGD------~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~ 140 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGD------ESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSG--SDDKVVKYWDL 140 (487)
T ss_pred EEEeecCCeEEEccC------CcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEec--CCCceEEEEEc
Confidence 467889999999832 455787886322 112221 1245688888999988888765 55568999999
Q ss_pred ccceEEEEE-EEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 82 SNNHWYLKY-EIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 82 ~NYHWYLKq-ei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
++-- . | +|. +..|-+ +..|+|-++.-++-|.-+|.+-. |++- ..- |+-
T Consensus 141 s~a~--v-~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl----~DtR---------------------~~~-~~v 190 (487)
T KOG0310|consen 141 STAY--V-QAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRL----WDTR---------------------SLT-SRV 190 (487)
T ss_pred CCcE--E-EEEec-CCcceeEeeccccCCCeEEEecCCCceEEE----EEec---------------------cCC-cee
Confidence 9865 2 3 221 223334 57999999874554444454443 4332 221 221
Q ss_pred ccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecC-ceE
Q 001314 160 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS-HLL 238 (1102)
Q Consensus 160 M~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~l 238 (1102)
.++.-.+||-.|.|-++++ +.|.-+.+.+-+|.+.........-. ..+-.+.-++..++ ..|
T Consensus 191 ---~elnhg~pVe~vl~lpsgs---~iasAgGn~vkVWDl~~G~qll~~~~-----------~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 191 ---VELNHGCPVESVLALPSGS---LIASAGGNSVKVWDLTTGGQLLTSMF-----------NHNKTVTCLRLASDSTRL 253 (487)
T ss_pred ---EEecCCCceeeEEEcCCCC---EEEEcCCCeEEEEEecCCceehhhhh-----------cccceEEEEEeecCCceE
Confidence 2344677898999988765 25556667788888753211100000 11112333333322 233
Q ss_pred EEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccccccceeeeeeccCCcEEEEccCCCCCceEEEE
Q 001314 239 LSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQ 318 (1102)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 318 (1102)
+..+.++ +-..+. ...+.+.+++..+++|+++.-+|+ ...+++=
T Consensus 254 lS~sLD~--~VKVfd---------------------------------~t~~Kvv~s~~~~~pvLsiavs~d-d~t~viG 297 (487)
T KOG0310|consen 254 LSGSLDR--HVKVFD---------------------------------TTNYKVVHSWKYPGPVLSIAVSPD-DQTVVIG 297 (487)
T ss_pred eeccccc--ceEEEE---------------------------------ccceEEEEeeecccceeeEEecCC-CceEEEe
Confidence 3222221 111111 113456777788999999988873 4667777
Q ss_pred eeCceEEE
Q 001314 319 FHGGKISE 326 (1102)
Q Consensus 319 ~~~G~v~~ 326 (1102)
..||-+..
T Consensus 298 msnGlv~~ 305 (487)
T KOG0310|consen 298 MSNGLVSI 305 (487)
T ss_pred cccceeee
Confidence 88887765
No 200
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.46 E-value=31 Score=44.41 Aligned_cols=190 Identities=20% Similarity=0.185 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhhc-------chHHHHHHHHhccC-HHHHHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHH
Q 001314 654 SAEEALKHLLWLA-------DSEAVYEAALGLYD-LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFE 725 (1102)
Q Consensus 654 ~ae~alk~l~fLv-------Dvn~Ly~~ALg~YD-l~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~Lkrye 725 (1102)
++||+=.++--.. |.+.||+..=|=-- +.|+.+.++ +-+|+| .++..|.-.......|..+.-|.+-+
T Consensus 195 ~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~--~~~~~~--q~~~~LsG~~~~l~dYL~eeVld~Lp 270 (894)
T COG2909 195 DTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALR--NNTSAE--QSLRGLSGAASHLSDYLVEEVLDRLP 270 (894)
T ss_pred ChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHcc--CCCcHH--HHhhhccchHHHHHHHHHHHHHhcCC
Confidence 4566666654443 55566553222111 344555554 467776 55555554455666666666666655
Q ss_pred HHHHHHHHc----------------CCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccCh------
Q 001314 726 NALKHIVSM----------------GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCF------ 783 (1102)
Q Consensus 726 kAl~hl~~~----------------g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~------ 783 (1102)
-.++.|.-. |.+.-+..++-...+ ++|=..| .|..+.-.+...||++|..+-++
T Consensus 271 ~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~-gLFl~~L---dd~~~WfryH~LFaeFL~~r~~~~~~~~~ 346 (894)
T COG2909 271 PELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERR-GLFLQRL---DDEGQWFRYHHLFAEFLRQRLQRELAARL 346 (894)
T ss_pred HHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhC-CCceeee---cCCCceeehhHHHHHHHHhhhccccCCch
Confidence 555544421 111123333333333 3331111 23333333444445544443222
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcC------------------CChHHH---HHHHHHHHHHHH
Q 001314 784 ----EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLK------------------LGKDEV---AKLAQELCEELQ 838 (1102)
Q Consensus 784 ----eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~------------------~~~~el---~~l~~~lA~~L~ 838 (1102)
..|+.-|...|....|++....+|+...+-.+..+++ ++.+-+ ..+.--.|=.+.
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~ 426 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLA 426 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHH
Confidence 3444555555555555555555555555444443321 121111 134444555667
Q ss_pred HcCChHHHHHHHH
Q 001314 839 ALGKPGEAAKIAL 851 (1102)
Q Consensus 839 ~~g~~~eAa~i~l 851 (1102)
..++|.||..+.-
T Consensus 427 s~~r~~ea~~li~ 439 (894)
T COG2909 427 SQHRLAEAETLIA 439 (894)
T ss_pred HccChHHHHHHHH
Confidence 7888888887753
No 201
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.46 E-value=5.8 Score=51.60 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
...++...++|..++.-+-.=|.+|.+.|++++|..+|.++-.|+ +++ ...+..+|..+.+. +...
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------------~~n-~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------------RDN-PEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------ccc-HHHHHHHHHHHHHh-hHHH
Confidence 345666777777666555556677777777777777755533322 212 24677778888877 8888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 001314 846 AAKIALDYCGDVTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 846 Aa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
|.+++. +||..|+.-+++.++..+=.
T Consensus 168 A~~m~~-------KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 168 AITYLK-------KAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHH-------HHHHHHHhhhcchHHHHHHH
Confidence 888764 59999999999998887543
No 202
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.25 E-value=3 Score=42.08 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=48.3
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCCcHHHHH---------HHHHHHhcchHHHHhcc--C-CcHhHHHHHHHHHHHHhc
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDSYHADCL---------NLMKKYAQLFPLGLKLI--T-DPAKMEQVLEAWADHLSD 779 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~~~deAi---------e~~~~~~~Ly~~AL~L~--~-d~~~~~~i~~~yAd~L~~ 779 (1102)
+..+.+....|+|++|...|.+.-....+..+ ...... +.|++|+.++ . ++.....+....|+-+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDEALATLQQIPDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 44466777789999999998876332111111 112355 7899999988 2 222333455566666666
Q ss_pred ccChHHHHHHHHHc
Q 001314 780 VKCFEDAATTYFCC 793 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~a 793 (1102)
.|++++|...|.+|
T Consensus 131 ~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 131 QGDYDEARAAYQKA 144 (145)
T ss_pred CCCHHHHHHHHHHh
Confidence 66666666665543
No 203
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=87.09 E-value=1.4 Score=51.08 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=69.4
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc-cccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~-~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++.|.|+-.|||+.. .+..|-|++. |-|+--.... -...|.++.||++|..|+-.- +...+++++.
T Consensus 226 ksvdWHP~kgLiasgs------kDnlVKlWDp---rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s---kD~~~kv~Di 293 (464)
T KOG0284|consen 226 KSVDWHPTKGLIASGS------KDNLVKLWDP---RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS---KDQSCKVFDI 293 (464)
T ss_pred ceeccCCccceeEEcc------CCceeEeecC---CCcchhhhhhhccceEEEEEEcCCCCeeEEcc---CCceEEEEeh
Confidence 3689999999999976 2458999984 2233222211 122599999999999999874 2347999988
Q ss_pred ccceEEEEEEEEeccCC---CceEEecCCCCceEEEEeeCCcEE
Q 001314 82 SNNHWYLKYEIRYLRRD---GIRFMWHPTKPLQLICWTLDGQIT 122 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~---~~~~~W~~e~pl~L~i~t~~g~~~ 122 (1102)
.- ..|+...... -.++.|||-.+--|..+..+|++.
T Consensus 294 R~-----mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 294 RT-----MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hH-----hHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 73 3355543322 256999999987566666666654
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=86.88 E-value=11 Score=45.30 Aligned_cols=101 Identities=7% Similarity=0.051 Sum_probs=58.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|..||.+.... ...+|-.++-.|-....++ . .........|++||+-|++.........|.+|....
T Consensus 250 ~~~~SPDG~~la~~~~~~---g~~~Iy~~d~~~~~~~~Lt--~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQG---GNTDIYTMDLRSGTTTRLT--D-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CcEECCCCCEEEEEEecC---CCceEEEEECCCCceEEcc--C-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 568999999888665331 3467777776554333221 1 112356689999999999875322333566666544
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-. -+.+.+.........|+|.... |++
T Consensus 324 ~~---~~~lt~~~~~~~~~~~SpdG~~-ia~ 350 (435)
T PRK05137 324 SN---PRRISFGGGRYSTPVWSPRGDL-IAF 350 (435)
T ss_pred CC---eEEeecCCCcccCeEECCCCCE-EEE
Confidence 33 1233332111134678887655 444
No 205
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=86.77 E-value=55 Score=37.26 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=74.9
Q ss_pred CceEEEEeeCCcEEEEEEE-----E-------ee-----e-ec-CCcEE-EEEeCCeEEeccCCCCCCCCcccccccccC
Q 001314 109 PLQLICWTLDGQITTYNFI-----W-------TT-----A-VM-ENSTA-LVIDGSKILVTPLSLSLMPPPMYLFSLKFP 168 (1102)
Q Consensus 109 pl~L~i~t~~g~~~~~~~~-----w-------~~-----~-~~-d~~~v-aVIDG~~l~lTp~r~a~VPPPM~~~~l~~~ 168 (1102)
..+|.++|++.++.+|+.. + .+ . ++ -.|.| .-|||. +-+--|... |=|+.....|.
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s---~~~~skkyaFk 220 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDS---EEAQSKKYAFK 220 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCc---hHHhhhceeEE
Confidence 3468888888888888876 1 11 1 22 23433 459986 555555553 45555555553
Q ss_pred C------------ceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCc
Q 001314 169 T------------AVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 236 (1102)
Q Consensus 169 ~------------~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 236 (1102)
+ |||+++|+|-. .+++.=-+||-+.+|+........++.+- ..++..+.+-.++
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~------------~~SI~slsfs~dG 286 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKY------------ETSISSLSFSMDG 286 (323)
T ss_pred eeecccCCceEEEEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCC------------CCceEEEEeccCC
Confidence 3 79999998864 36776678888888887655544433321 1457778888888
Q ss_pred eEEEEE
Q 001314 237 LLLSVS 242 (1102)
Q Consensus 237 ~ll~~~ 242 (1102)
..|++.
T Consensus 287 ~~LAia 292 (323)
T KOG1036|consen 287 SLLAIA 292 (323)
T ss_pred CeEEEE
Confidence 888874
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=86.70 E-value=14 Score=44.42 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=54.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc-
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS- 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~- 82 (1102)
..+|.|.|+.||.+... +...+|-.++-+|-....+ .. ....+....|++||.-|++.. +.....|||.+.
T Consensus 244 ~~~~SPDG~~la~~~~~---~g~~~Iy~~d~~~~~~~~l--t~-~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~ 315 (427)
T PRK02889 244 APAWSPDGRTLAVALSR---DGNSQIYTVNADGSGLRRL--TQ-SSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPA 315 (427)
T ss_pred ceEECCCCCEEEEEEcc---CCCceEEEEECCCCCcEEC--CC-CCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEEC
Confidence 57899999999865422 1245666666554322222 11 122356688999999998764 333346777653
Q ss_pred -cceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 83 -NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 83 -NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
.-. .+.+.+.........|+|.... ++.
T Consensus 316 ~~g~---~~~lt~~g~~~~~~~~SpDG~~-Ia~ 344 (427)
T PRK02889 316 SGGA---AQRVTFTGSYNTSPRISPDGKL-LAY 344 (427)
T ss_pred CCCc---eEEEecCCCCcCceEECCCCCE-EEE
Confidence 222 1233332211134678886655 444
No 207
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.61 E-value=33 Score=38.97 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=99.5
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCC--eEEEEEeeCCCC-eEEEEEc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYD-SVKICFF 81 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~--iLAv~~~~~~~~-~vqLWt~ 81 (1102)
.+|.-+|+.+++.. .+..+-.|+=---.-..+.. .+..|..+.|=.--. +|+- ...| .|.+|++
T Consensus 78 v~WsddgskVf~g~------~Dk~~k~wDL~S~Q~~~v~~---Hd~pvkt~~wv~~~~~~cl~T----GSWDKTlKfWD~ 144 (347)
T KOG0647|consen 78 VCWSDDGSKVFSGG------CDKQAKLWDLASGQVSQVAA---HDAPVKTCHWVPGMNYQCLVT----GSWDKTLKFWDT 144 (347)
T ss_pred EEEccCCceEEeec------cCCceEEEEccCCCeeeeee---cccceeEEEEecCCCcceeEe----cccccceeeccc
Confidence 58999999998865 34456665532223333332 244688888866555 4443 2233 7999998
Q ss_pred ccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEE--------------Eeee----ecCC-c-EEEEE
Q 001314 82 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI--------------WTTA----VMEN-S-TALVI 141 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~--------------w~~~----~~d~-~-~vaVI 141 (1102)
-+-.=- ..+.. .+. +..=|-+.|+ +++.|.+.++.+|++. |.+- ..|. + .+.-|
T Consensus 145 R~~~pv--~t~~L--PeR-vYa~Dv~~pm-~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 145 RSSNPV--ATLQL--PER-VYAADVLYPM-AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred CCCCee--eeeec--cce-eeehhccCce-eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 754311 11111 122 2355778888 8888988899999985 3321 1121 1 23335
Q ss_pred eCCeEEeccCCCCCCCCcccccccccC----------CceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 142 DGSKILVTPLSLSLMPPPMYLFSLKFP----------TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 142 DG~~l~lTp~r~a~VPPPM~~~~l~~~----------~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
+|.- -+- ..+.|-|-..+.++.. -+||+|+|.+-. .+++.+=+||++.||.-+..
T Consensus 219 EGrv-~iq---~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 219 EGRV-AIQ---YIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred cceE-EEE---ecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc--ceEEEecCCceEEEecchhh
Confidence 5542 111 1112223222222221 148899998854 47899999999999986543
No 208
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=86.46 E-value=5.6 Score=47.60 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHcCChHHHHHH
Q 001314 829 LAQELCEELQALGKPGEAAKI 849 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa~i 849 (1102)
...-+|+...+.|+-.+|...
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHH
Confidence 344444444444544444333
No 209
>PRK01029 tolB translocation protein TolB; Provisional
Probab=86.41 E-value=4.8 Score=48.46 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=59.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|.|..||.+.+.. ...+|..++-.|-....++- ....+....|++||..|++.........|.+|...+
T Consensus 331 ~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIK---GVRQICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred ceeECCCCCEEEEEEcCC---CCcEEEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 578999999999876432 24678888876544333321 123467799999999999876444445688888766
Q ss_pred ceEEEEEEEEeccCCCceEEecC
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHP 106 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~ 106 (1102)
-. .+.+..+..+.....|+|
T Consensus 405 g~---~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 405 KK---TRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred CC---EEEeecCCCcccCceecC
Confidence 65 233322211112357876
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=86.40 E-value=1.8 Score=52.37 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=95.1
Q ss_pred ceeecc-CCCeEEEEeeccCCCCCCeEEE--EecCCcceeeeecCC---ccccceeeeeecC-CCCeEEEEEeeCCCC-e
Q 001314 4 VLEWMP-SGANIAAVYDRKSENKCPSIVF--YERNGLERSSFDINE---QIDSTVELLKWNC-MSDLLAAVVRFEEYD-S 75 (1102)
Q Consensus 4 ~LsWrP-sGnlIA~~qr~~~~~~~~~VvF--FERNGLrhgeF~L~~---~~~~~v~~L~Wn~-DS~iLAv~~~~~~~~-~ 75 (1102)
-|.|-| .-.-+|... ++..|.+ .+-|||..-+-+--. ....+|..|.|-+ -++|||+.. +| .
T Consensus 632 Dl~WdPFD~~rLAVa~------ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as----yd~T 701 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVAT------DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS----YDST 701 (1012)
T ss_pred ecccCCCChHHeeecc------cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh----ccce
Confidence 478888 566777766 2344544 578999876643221 0234799999997 588999865 44 7
Q ss_pred EEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeee--------ecCCc--EEEEEeCC
Q 001314 76 VKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTA--------VMENS--TALVIDGS 144 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~--------~~d~~--~vaVIDG~ 144 (1102)
|.||+.-|..=|++-. +..+++ .+.|+|..-. ++.++.+|.+.+|+=.-.-. +.-.| ++-+.||.
T Consensus 702 i~lWDl~~~~~~~~l~---gHtdqIf~~AWSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLV---GHTDQIFGIAWSPDGRR-IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR 777 (1012)
T ss_pred eeeeehhhhhhhheec---cCcCceeEEEECCCCcc-eeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc
Confidence 9999999999777643 234554 5999998766 88889999999887553221 11112 66679999
Q ss_pred eEEeccCCCC
Q 001314 145 KILVTPLSLS 154 (1102)
Q Consensus 145 ~l~lTp~r~a 154 (1102)
.|.+|-|...
T Consensus 778 ~viv~Gfdk~ 787 (1012)
T KOG1445|consen 778 IVIVVGFDKS 787 (1012)
T ss_pred EEEEeccccc
Confidence 9999988764
No 211
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=86.30 E-value=16 Score=36.80 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHcCCHH--H---------HHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCCSSLE--K---------AMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL 837 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~ag~~e--k---------Al~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L 837 (1102)
..-..|+.+...++|++|...|..+-... . ...++...|++++|+........ +.-........++.+
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 34456777778888888888887664321 1 22555667777777777655321 111122344455555
Q ss_pred HHcCChHHHHHHH
Q 001314 838 QALGKPGEAAKIA 850 (1102)
Q Consensus 838 ~~~g~~~eAa~i~ 850 (1102)
...|++.+|...|
T Consensus 129 ~~~g~~~~A~~~y 141 (145)
T PF09976_consen 129 LAQGDYDEARAAY 141 (145)
T ss_pred HHCCCHHHHHHHH
Confidence 5666666665555
No 212
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.26 E-value=13 Score=37.04 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHhcccChHHHHHHHHHcCCHHHHHHHHHHc-CCHHHHHHHHhh
Q 001314 776 HLSDVKCFEDAATTYFCCSSLEKAMKAYRAS-GNWSGVLTVAGL 818 (1102)
Q Consensus 776 ~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~a-g~W~~al~lA~~ 818 (1102)
.....+.|++|..+|.+.|++++|++.+... ++.+.|+..+.+
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 3334445556666666666666666666554 555555555554
No 213
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=85.99 E-value=23 Score=40.20 Aligned_cols=140 Identities=16% Similarity=0.272 Sum_probs=93.6
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCC-------C-ceEEecCCCCceEEEEeeCCcEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-------G-IRFMWHPTKPLQLICWTLDGQIT 122 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~-------~-~~~~W~~e~pl~L~i~t~~g~~~ 122 (1102)
.++--.+++||..|+-- .....|.+|...|-+ |+..+.|-..+ . +++.|+...-+ |+-|..+|.+-
T Consensus 215 h~EcA~FSPDgqyLvsg---SvDGFiEVWny~~GK--lrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-lAsGsqDGkIK 288 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSG---SVDGFIEVWNYTTGK--LRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-LASGSQDGKIK 288 (508)
T ss_pred chhheeeCCCCceEeec---cccceeeeehhccch--hhhhhhhhhhcceeecccceEEEeecccHHH-hhccCcCCcEE
Confidence 46667799999999864 234579999877765 45555554433 2 46777766666 78888889887
Q ss_pred EEEEEEeee----------ecCCcEEEE---EeCCeEEeccCCCCCCCCcc----cccccc-cCCceeEEEEecCCCCce
Q 001314 123 TYNFIWTTA----------VMENSTALV---IDGSKILVTPLSLSLMPPPM----YLFSLK-FPTAVTEMAFYSKSSKNC 184 (1102)
Q Consensus 123 ~~~~~w~~~----------~~d~~~vaV---IDG~~l~lTp~r~a~VPPPM----~~~~l~-~~~~i~~vaf~~~~~~~~ 184 (1102)
+ |.+. ++..|+.++ =|++.++-+.|...+=---| +..++. -.+-||++.|++++. .
T Consensus 289 v----Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~--~ 362 (508)
T KOG0275|consen 289 V----WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH--H 362 (508)
T ss_pred E----EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC--e
Confidence 6 5554 223455554 78999999988775422222 222222 255699999988764 5
Q ss_pred EEEEEeCCceEEEecCCC
Q 001314 185 LAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 185 ~a~vl~~~~l~l~~~~~~ 202 (1102)
+.-..+||++-+|+....
T Consensus 363 iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTT 380 (508)
T ss_pred EEEecCCccEEEecCcch
Confidence 555689999999987543
No 214
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=85.92 E-value=30 Score=39.46 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred EEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccC
Q 001314 146 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 225 (1102)
Q Consensus 146 l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 225 (1102)
+|+-||.. . =|-=.-..++.+. ..+.-|++.+. .+|+=+.||.+.+|.+.+..-- +-+ .....
T Consensus 4 ~L~d~f~~-~-~PEel~~tld~~~-a~~~~Fs~~G~--~lAvGc~nG~vvI~D~~T~~ia-----r~l-------saH~~ 66 (405)
T KOG1273|consen 4 ELLDPFGV-E-YPEELTHTLDNPL-AECCQFSRWGD--YLAVGCANGRVVIYDFDTFRIA-----RML-------SAHVR 66 (405)
T ss_pred cccccccc-c-ChHhhceeccCCc-cceEEeccCcc--eeeeeccCCcEEEEEccccchh-----hhh-------hcccc
Confidence 45566665 2 2333345566666 67889988764 6777799999999998653211 111 12223
Q ss_pred ceEEEEEecCceEEEEE
Q 001314 226 SVIHLIWLGSHLLLSVS 242 (1102)
Q Consensus 226 ~~~~~~w~~~~~ll~~~ 242 (1102)
.+..++|-.+|..+..+
T Consensus 67 pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTS 83 (405)
T ss_pred ceeEEEecCCCCEeeee
Confidence 46778999999877653
No 215
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=85.58 E-value=62 Score=36.71 Aligned_cols=165 Identities=21% Similarity=0.322 Sum_probs=115.4
Q ss_pred ceeecc--CCCeEEEEeeccCCCCCCeEEEEecCCccee-eeecCCccccceeeeeecCCCC---eEEEEEeeCCCCeEE
Q 001314 4 VLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDSTVELLKWNCMSD---LLAAVVRFEEYDSVK 77 (1102)
Q Consensus 4 ~LsWrP--sGnlIA~~qr~~~~~~~~~VvFFERNGLrhg-eF~L~~~~~~~v~~L~Wn~DS~---iLAv~~~~~~~~~vq 77 (1102)
.+-|=| .|=++.++ + ++.+..|+-|-|.-- .|+.|+ +|-.-+|++=+. +.|+-+ ....||
T Consensus 106 s~~WyP~DtGmFtssS--F-----DhtlKVWDtnTlQ~a~~F~me~----~VYshamSp~a~sHcLiA~gt---r~~~Vr 171 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSS--F-----DHTLKVWDTNTLQEAVDFKMEG----KVYSHAMSPMAMSHCLIAAGT---RDVQVR 171 (397)
T ss_pred eeEEeeecCceeeccc--c-----cceEEEeecccceeeEEeecCc----eeehhhcChhhhcceEEEEec---CCCcEE
Confidence 356888 45444443 3 689999999998764 788876 899999999877 555544 245799
Q ss_pred EEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCC
Q 001314 78 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 156 (1102)
Q Consensus 78 LWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~V 156 (1102)
|-++..--. .+.+ .+.+++ +.+.|+|..-..|+.+..+|.+.. |++-- -.|...|.|-.+- +
T Consensus 172 LCDi~SGs~--sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irl----WDiRr-asgcf~~lD~hn~---------k 234 (397)
T KOG4283|consen 172 LCDIASGSF--SHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRL----WDIRR-ASGCFRVLDQHNT---------K 234 (397)
T ss_pred EEeccCCcc--eeee-ccccCceEEEEeccCceeEEEecCCCceEEE----EEeec-ccceeEEeecccC---------c
Confidence 998755431 1222 344555 579999999999999999998775 66641 2367788886543 2
Q ss_pred CCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 157 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 157 PPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
-||.---.......|+..||++... .++.+-.++.+.+|+...
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCccccccccccceeeeeeecccch--hhhhccCccceEEeeccc
Confidence 3444435556778899999988764 456677888899998754
No 216
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.48 E-value=3.9 Score=40.46 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=39.1
Q ss_pred hhchhHHHhhhcHHHHHHHHHHc---CC---CcHHHHHHH---HHHHhcchHHHHhccC-------CcHhHHHHHHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSM---GD---SYHADCLNL---MKKYAQLFPLGLKLIT-------DPAKMEQVLEAWAD 775 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~---g~---~~~deAie~---~~~~~~Ly~~AL~L~~-------d~~~~~~i~~~yAd 775 (1102)
+......+.+|+.++|+.+|.++ |. .+....|.+ .+.. +.+++|+.++. +++-...+...+|.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44555666677777777777654 11 111111222 2344 55666665550 11112333444555
Q ss_pred HHhcccChHHHHHHHHH
Q 001314 776 HLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 776 ~L~~~~~~eeAa~~Y~~ 792 (1102)
-|...|++++|...+..
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 55566666666555554
No 217
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.00 E-value=23 Score=39.17 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=93.3
Q ss_pred eeecc--CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCC--CCeEEEEEeeCCCCeEEEEE
Q 001314 5 LEWMP--SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 5 LsWrP--sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~D--S~iLAv~~~~~~~~~vqLWt 80 (1102)
++|-- .|++||+..- ++..|+-=|-|| |-.+---....+..|+.++|-+. |=+||.-. .++ .|-+.+
T Consensus 62 v~wahPk~G~iLAScsY-----DgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~Lacas--SDG-~vsvl~ 132 (299)
T KOG1332|consen 62 VAWAHPKFGTILASCSY-----DGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS--SDG-KVSVLT 132 (299)
T ss_pred EeecccccCcEeeEeec-----CceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEee--CCC-cEEEEE
Confidence 45643 8999999863 355666667888 54432222112334666666554 55555543 222 355555
Q ss_pred cccc-eEEEEEEEEeccCCC-ceEEecCC---CC----------ceEEEEeeCCcEEEEEEE------------------
Q 001314 81 FSNN-HWYLKYEIRYLRRDG-IRFMWHPT---KP----------LQLICWTLDGQITTYNFI------------------ 127 (1102)
Q Consensus 81 ~~NY-HWYLKqei~~~~~~~-~~~~W~~e---~p----------l~L~i~t~~g~~~~~~~~------------------ 127 (1102)
..+- -|--+.+...- .-+ .+++|.|- .+ .+|+-+-.+..+-+-.|.
T Consensus 133 ~~~~g~w~t~ki~~aH-~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAH-EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred EcCCCCccchhhhhcc-ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 5554 66555444322 223 46899875 21 234443333333333332
Q ss_pred ---Eeee----------ecCCcEEEE----EeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEe
Q 001314 128 ---WTTA----------VMENSTALV----IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 190 (1102)
Q Consensus 128 ---w~~~----------~~d~~~vaV----IDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~ 190 (1102)
|... ++.+|.|.+ .|+..=+.|+|.. ||..+=.|+||..+ |.+++--.
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~-------------f~~~~w~vSWS~sG--n~LaVs~G 276 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE-------------FPDVVWRVSWSLSG--NILAVSGG 276 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc-------------CCcceEEEEEeccc--cEEEEecC
Confidence 1111 123343332 3333344444433 66677788887754 67888788
Q ss_pred CCceEEEecCCCCcc
Q 001314 191 DGCLCVVDLPAPDML 205 (1102)
Q Consensus 191 ~~~l~l~~~~~~~~~ 205 (1102)
|+.+.+|.-+....|
T Consensus 277 dNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 277 DNKVTLWKENVDGKW 291 (299)
T ss_pred CcEEEEEEeCCCCcE
Confidence 889999875433334
No 218
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=84.88 E-value=3.9 Score=47.77 Aligned_cols=149 Identities=16% Similarity=0.257 Sum_probs=100.3
Q ss_pred CceeeccC--CCeEEEEeeccCCCCCCeEEEEecCCc-ceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCC-eEEE
Q 001314 3 AVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD-SVKI 78 (1102)
Q Consensus 3 ~~LsWrPs--GnlIA~~qr~~~~~~~~~VvFFERNGL-rhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~-~vqL 78 (1102)
+++.|.|- +.-||+.. .+..|.+|.=++- .-++|+ + -..+|...+|+++|..|+--. .| .=.|
T Consensus 221 ~~~~fhP~~~~~~lat~s------~Dgtvklw~~~~e~~l~~l~--g-H~~RVs~VafHPsG~~L~Tas----fD~tWRl 287 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATAS------ADGTVKLWKLSQETPLQDLE--G-HLARVSRVAFHPSGKFLGTAS----FDSTWRL 287 (459)
T ss_pred eeEEEccCCCccceeeec------cCCceeeeccCCCcchhhhh--c-chhhheeeeecCCCceeeecc----cccchhh
Confidence 46789993 76777765 3568888887763 122221 1 124799999999999999764 33 5778
Q ss_pred EEcccceEEEEEEEEeccC--CCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCC
Q 001314 79 CFFSNNHWYLKYEIRYLRR--DGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 155 (1102)
Q Consensus 79 Wt~~NYHWYLKqei~~~~~--~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~ 155 (1102)
|+... |+|+-.-.. .++ ++.||+...+ ..+|.+-.+--.|++-.. ..+.+.+|- +
T Consensus 288 WD~~t-----k~ElL~QEGHs~~v~~iaf~~DGSL-----~~tGGlD~~~RvWDlRtg--r~im~L~gH-~--------- 345 (459)
T KOG0272|consen 288 WDLET-----KSELLLQEGHSKGVFSIAFQPDGSL-----AATGGLDSLGRVWDLRTG--RCIMFLAGH-I--------- 345 (459)
T ss_pred ccccc-----chhhHhhcccccccceeEecCCCce-----eeccCccchhheeecccC--cEEEEeccc-c---------
Confidence 98876 666654332 234 5899998877 224556666667876421 255666662 1
Q ss_pred CCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 156 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 156 VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.+|-+|+|+|++ ..+|.--+|++.-+|.+.-
T Consensus 346 -------------k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 346 -------------KEILSVAFSPNG--YHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred -------------cceeeEeECCCc--eEEeecCCCCcEEEeeecc
Confidence 257899999965 3677778899999998743
No 219
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=84.84 E-value=6 Score=47.74 Aligned_cols=96 Identities=10% Similarity=0.219 Sum_probs=64.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc-cccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~-~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+++|-|-|+-.|...- ...+..|-||+-+- .-+.+.|-.. ....++.+.|++-|..+++..-..-...+++++++
T Consensus 450 ~FaWEP~gdkF~vi~g---~~~k~tvsfY~~e~-~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISG---NTVKNTVSFYAVET-NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeccCCCeEEEEEc---cccccceeEEEeec-CCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 4799999999999862 23478899987764 1122322211 12469999999999999988654445679999998
Q ss_pred c--ceEEEEEEEEeccCC--C-ceEEecCCCCc
Q 001314 83 N--NHWYLKYEIRYLRRD--G-IRFMWHPTKPL 110 (1102)
Q Consensus 83 N--YHWYLKqei~~~~~~--~-~~~~W~~e~pl 110 (1102)
+ +. +....+ . ..+-|||+.-+
T Consensus 526 ~a~~k-------~~~~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 526 YADLK-------DTASPEHFAATEVEWDPTGRY 551 (698)
T ss_pred hhhhh-------hccCccccccccceECCCCCE
Confidence 5 32 111111 1 23899998776
No 220
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=84.83 E-value=4.7 Score=46.59 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=64.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeec--CCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI--NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L--~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
..+..|.|.+||+.. + +..|.+|. -|-|+|-- |+. -..|-.++|++||.+|-- +.+...+.+|..
T Consensus 372 ~V~fSPd~r~IASaS-F-----DkSVkLW~---g~tGk~lasfRGH-v~~VYqvawsaDsRLlVS---~SkDsTLKvw~V 438 (480)
T KOG0271|consen 372 HVSFSPDGRYIASAS-F-----DKSVKLWD---GRTGKFLASFRGH-VAAVYQVAWSADSRLLVS---GSKDSTLKVWDV 438 (480)
T ss_pred eEEECCCccEEEEee-c-----ccceeeee---CCCcchhhhhhhc-cceeEEEEeccCccEEEE---cCCCceEEEEEe
Confidence 367889999999986 2 45788885 24455533 332 236999999999998753 355668999999
Q ss_pred ccceEEEEEEEEeccCCCc-eEEecCCCCc
Q 001314 82 SNNHWYLKYEIRYLRRDGI-RFMWHPTKPL 110 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~-~~~W~~e~pl 110 (1102)
..-+ |||.+. +..|.+ +|.|+|....
T Consensus 439 ~tkK--l~~DLp-Gh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 439 RTKK--LKQDLP-GHADEVFAVDWSPDGQR 465 (480)
T ss_pred eeee--ecccCC-CCCceEEEEEecCCCce
Confidence 8876 666653 234554 5899998765
No 221
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=84.77 E-value=3.1 Score=47.88 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=52.7
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
.+|+..|+|++||++..+ ....=||==.+|.|-.||- |+..-..|-.|++++||+.|++. .+.+.|.++
T Consensus 177 Aalafs~~G~llATASeK----GTVIRVf~v~~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~s---S~TeTVHiF 245 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEK----GTVIRVFSVPEGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAAS---SNTETVHIF 245 (391)
T ss_pred eEEEECCCCCEEEEeccC----ceEEEEEEcCCccEeeeee-CCceeeEEEEEEECCCCCeEEEe---cCCCeEEEE
Confidence 468999999999999733 2233367779999999983 23334569999999999999987 346678877
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=84.58 E-value=4.4 Score=48.64 Aligned_cols=126 Identities=19% Similarity=0.348 Sum_probs=81.9
Q ss_pred ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEe-ccCCCCCCCCcccccccccCCceeEEEEec
Q 001314 100 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV-TPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 178 (1102)
Q Consensus 100 ~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~l-Tp~r~a~VPPPM~~~~l~~~~~i~~vaf~~ 178 (1102)
++++|=|-++..+.+.-.+|+++.|+......+.+...-+.=||+...+ |.+... ---|..-..+--. .|+..+|++
T Consensus 223 T~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~-~rNPv~~w~~~~g-~in~f~FS~ 300 (636)
T KOG2394|consen 223 TCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKK-TRNPVARWHIGEG-SINEFAFSP 300 (636)
T ss_pred EEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccc-cCCccceeEeccc-cccceeEcC
Confidence 5689999888767776789999999875444333334444444444432 222221 1155555555444 899999999
Q ss_pred CCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEEEE
Q 001314 179 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 241 (1102)
Q Consensus 179 ~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~ 241 (1102)
+.. ++|.|-.||.|-+|+.+...-. + .-..=|+-+.-.+|-.|+..+++
T Consensus 301 DG~--~LA~VSqDGfLRvF~fdt~eLl----g--------~mkSYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 301 DGK--YLATVSQDGFLRIFDFDTQELL----G--------VMKSYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred CCc--eEEEEecCceEEEeeccHHHHH----H--------HHHhhccceEEEEEcCCccEEEe
Confidence 654 7999999999999998542211 1 01233567788899999887764
No 223
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=84.48 E-value=45 Score=35.96 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+....++..+...|++.+|..++..
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777777777888777776543
No 224
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.30 E-value=9.3 Score=45.03 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=92.1
Q ss_pred eeeeeecCC-CCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEE--
Q 001314 52 VELLKWNCM-SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFI-- 127 (1102)
Q Consensus 52 v~~L~Wn~D-S~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~-- 127 (1102)
|..|+||.+ ..|||-- ..-..|.||++.--. =|+.+.. ....+ ++.|||-.|..|.-|+.+|++..++-.
T Consensus 246 vl~Ls~n~~~~nVLaSg---saD~TV~lWD~~~g~--p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG---SADKTVKLWDVDTGK--PKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHHHhccccceeEEec---CCCceEEEEEcCCCC--cceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 568999976 5677743 223489999987654 1344442 12234 599999999989999988888877765
Q ss_pred ------Eeeee----------cCCcEEEEEeCCeEEeccCCCCCCCCcccccccc-cCCceeEEEEecCCCCceEEEEEe
Q 001314 128 ------WTTAV----------MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILS 190 (1102)
Q Consensus 128 ------w~~~~----------~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~-~~~~i~~vaf~~~~~~~~~a~vl~ 190 (1102)
|.+.+ +...++.-.|--+|+--..|..- -|. ++++ -+.+|..++++... .+.++..-+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~v--wt~~AHd~~ISgl~~n~~~-p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPV--WTLKAHDDEISGLSVNIQT-PGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--Cce--eEEEeccCCcceEEecCCC-Ccceeeccc
Confidence 66651 22233333555567777777632 333 3333 35688888887754 467777788
Q ss_pred CCceEEEecCC
Q 001314 191 DGCLCVVDLPA 201 (1102)
Q Consensus 191 ~~~l~l~~~~~ 201 (1102)
++.+.+|+++.
T Consensus 395 d~~Vklw~~~~ 405 (463)
T KOG0270|consen 395 DKVVKLWKFDV 405 (463)
T ss_pred cceEEEEeecC
Confidence 89999999864
No 225
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=84.26 E-value=4.1 Score=50.21 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=77.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc--cccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~--~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.|.|.|+|.++++..| +..+.+||+-----+||..-.. ....|-+=.|++|+--+|-.-+ ...|.+|-.
T Consensus 577 ~l~FSpdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR---DK~VkVW~~ 647 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR---DKKVKVWEE 647 (764)
T ss_pred EEEECCCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecC---CceEEEEec
Confidence 4899999999999985 4689999986555666663321 1234888999999999776542 236999999
Q ss_pred ccc--eEEEEE--EEEeccCCCc-eEEe----cCCCCceEEEEeeCCcEEEEEEE
Q 001314 82 SNN--HWYLKY--EIRYLRRDGI-RFMW----HPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 82 ~NY--HWYLKq--ei~~~~~~~~-~~~W----~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
.+- . |.++ -+.+ +..+ .+.| |+|+...+.+|+.+|.+..+++.
T Consensus 648 ~~~~d~-~i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 648 PDLRDK-YISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCchhh-hhhhhchhcc--CCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 887 4 3333 1222 2222 3556 45666578999999999887644
No 226
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=84.10 E-value=47 Score=42.32 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc--ceEE
Q 001314 10 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWY 87 (1102)
Q Consensus 10 sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N--YHWY 87 (1102)
+||-|++..| .++.+.+|+..| -.-.+-+|. + ..++|+-. ...+.+|.++. +-=|
T Consensus 93 ~g~~i~~~~r-----gk~i~~~~~~~~-a~v~~l~~f--G-----------e~lia~d~----~~~l~vw~~s~~~~e~~ 149 (910)
T KOG1539|consen 93 SGNKIYAYAR-----GKHIRHTTLLHG-AKVHLLLPF--G-----------EHLIAVDI----SNILFVWKTSSIQEELY 149 (910)
T ss_pred cCcEEEEEEc-----cceEEEEecccc-ceEEEEeee--c-----------ceEEEEEc----cCcEEEEEecccccccc
Confidence 5666666654 256666666666 222333332 1 23445433 66788998877 4446
Q ss_pred EEEEEEeccCCCceEEecCCCC-ceEEEEeeCCcEEEEEEE----------Eeee------ecCCcEEEE--EeCCeEEe
Q 001314 88 LKYEIRYLRRDGIRFMWHPTKP-LQLICWTLDGQITTYNFI----------WTTA------VMENSTALV--IDGSKILV 148 (1102)
Q Consensus 88 LKqei~~~~~~~~~~~W~~e~p-l~L~i~t~~g~~~~~~~~----------w~~~------~~d~~~vaV--IDG~~l~l 148 (1102)
|+.++.-...+.++---||..= ..+.+|.++|++.+.|+. |..- .+--.+||| +||.-+.
T Consensus 150 l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii- 228 (910)
T KOG1539|consen 150 LQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII- 228 (910)
T ss_pred ccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEE-
Confidence 6633332222324445676544 467888899998887765 2211 011125555 6776433
Q ss_pred ccCCCCCCCCcccccccccC-CceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 149 TPLSLSLMPPPMYLFSLKFP-TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 149 Tp~r~a~VPPPM~~~~l~~~-~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
--++.. ---|+| +.| .+|..++|..++.. .+++-.++|.+.+|+++..
T Consensus 229 fNlK~d--kil~sF---k~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 229 FNLKFD--KILMSF---KQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred EEcccC--cEEEEE---EccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCC
Confidence 333332 112333 344 88999999987653 5565567788999998764
No 227
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=83.94 E-value=56 Score=40.77 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=25.8
Q ss_pred hhccccchHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHH
Q 001314 1011 GMSLTVGAKQELKSLVVFLVMLGEVD-----TARKLQDTGETFQL 1050 (1102)
Q Consensus 1011 ~l~~~~~~~~ev~~Ll~~Lv~~~~~e-----~A~~lQ~~~~~~~~ 1050 (1102)
+|+.++.=..|+..+++-|-..|... .|.++-..-..|..
T Consensus 633 kL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l 677 (700)
T KOG1156|consen 633 KLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLL 677 (700)
T ss_pred hHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHH
Confidence 36666555667999999888877652 25555555555543
No 228
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=83.81 E-value=4 Score=41.31 Aligned_cols=20 Identities=15% Similarity=0.008 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 001314 831 QELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 831 ~~lA~~L~~~g~~~eAa~i~ 850 (1102)
..+|..+...|+|.+|...|
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444433
No 229
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=83.19 E-value=1.3 Score=36.30 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=25.5
Q ss_pred eEEecCCCCceEEEEeeCCcEEEEEEEEe
Q 001314 101 RFMWHPTKPLQLICWTLDGQITTYNFIWT 129 (1102)
Q Consensus 101 ~~~W~~e~pl~L~i~t~~g~~~~~~~~w~ 129 (1102)
++.|+|..++ |++++.+|++.+|++.|.
T Consensus 16 ~~~w~P~mdL-iA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 16 CMSWCPTMDL-IALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEECCCCCE-EEEEECCCeEEEEECCCc
Confidence 4899999999 999999999999998775
No 230
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.15 E-value=31 Score=42.46 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHcCCHHHHHHHHHHcCCHHHHHHHHhh-cC-------CChHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 001314 789 TYFCCSSLEKAMKAYRASGNWSGVLTVAGL-LK-------LGKDEVAKLAQELCEELQALGKPGEAAKIALDY 853 (1102)
Q Consensus 789 ~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~-l~-------~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y 853 (1102)
.+...|+|.+|++....+ +.++++ +. .-.+++..+-..+|-.|+.+|+-+||-.||...
T Consensus 184 ~~i~~gky~qA~elL~kA------~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKA------LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHhcccHHHHHHHHHHH------HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344556777777766553 233322 10 112466778888999999999999999999774
No 231
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.08 E-value=23 Score=38.99 Aligned_cols=116 Identities=22% Similarity=0.138 Sum_probs=75.7
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC---------H
Q 001314 787 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD---------V 857 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD---------~ 857 (1102)
+.+|.+.|..+.|-+.|.+ |+.++..- -++....+..|.++|+|++|-.-|.+-+.| .
T Consensus 76 A~~Yq~~Ge~~~A~e~Yrk------Alsl~p~~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 76 AHYYQKLGENDLADESYRK------ALSLAPNN-------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred HHHHHHcCChhhHHHHHHH------HHhcCCCc-------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 3567777888888777765 55554332 258889999999999999999888664444 5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 001314 858 TNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGE--YKEGLEKVGKYLTR 917 (1102)
Q Consensus 858 e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~l~~a~~~~~e--l~e~~~~~~k~~~R 917 (1102)
+.+.-|..++++++.|-..-.+- -++....-++.++.+..++.+ +.+-..-+.+|..|
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~ra--L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRA--LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHH--HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 67888888999999886544332 111111445567777777765 33333334444444
No 232
>PRK11189 lipoprotein NlpI; Provisional
Probab=82.78 E-value=24 Score=40.08 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=41.5
Q ss_pred hchhHHHhhhcHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcc
Q 001314 713 MRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 780 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~~---g~~~----~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~ 780 (1102)
....+...+|+|++|+..|.++ .+++ ...++-+ ... +.|++|++.+ .+|.... ...|...+...
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~-g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~~ 178 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL-YYG-GRYELAQDDLLAFYQDDPNDPY--RALWLYLAESK 178 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHcc
Confidence 4456777888999998887765 3322 1222222 234 6777777766 1332211 11222333445
Q ss_pred cChHHHHHHHHH
Q 001314 781 KCFEDAATTYFC 792 (1102)
Q Consensus 781 ~~~eeAa~~Y~~ 792 (1102)
+++++|...|.+
T Consensus 179 ~~~~~A~~~l~~ 190 (296)
T PRK11189 179 LDPKQAKENLKQ 190 (296)
T ss_pred CCHHHHHHHHHH
Confidence 667777777744
No 233
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.68 E-value=31 Score=43.48 Aligned_cols=106 Identities=21% Similarity=0.140 Sum_probs=71.3
Q ss_pred CcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHH-HHcCCHHHHHHHHhhcCCC-hHHHHHHHHH-HHHHHH
Q 001314 762 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY-RASGNWSGVLTVAGLLKLG-KDEVAKLAQE-LCEELQ 838 (1102)
Q Consensus 762 d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y-~~ag~W~~al~lA~~l~~~-~~el~~l~~~-lA~~L~ 838 (1102)
..++-+....+=|=-|.++++|+.||-+|.-||..+.|++.. ...+|.+-|+.+|+-+.-+ .+.++.+.++ +-..-.
T Consensus 447 ~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~ 526 (631)
T PF12234_consen 447 TEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAI 526 (631)
T ss_pred CChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhcccc
Confidence 445556666666777899999999999999999999999876 5678999999999987543 1223333322 111111
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhc
Q 001314 839 ALGKPGEAAKIALDYCGDVTNGISLLIDAR 868 (1102)
Q Consensus 839 ~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~ 868 (1102)
+.|+.=.+.-+|.. +|+++.|++.++..-
T Consensus 527 ~~~d~wl~s~~~W~-L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 527 KEGDRWLASWAFWM-LGDYDEAIRALISPP 555 (631)
T ss_pred ccCCHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 34555455555544 777777777776543
No 234
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.59 E-value=21 Score=40.61 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=92.8
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
|+-.|||.|--+.. .++.+..|.==-. ++-|.+|.... -..+.|++.|+-.+|.. .+.|-+|-..|=
T Consensus 133 lsiHPS~KLALsVg------~D~~lr~WNLV~G-r~a~v~~L~~~--at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A 199 (362)
T KOG0294|consen 133 LSIHPSGKLALSVG------GDQVLRTWNLVRG-RVAFVLNLKNK--ATLVSWSPQGDHFVVSG----RNKIDIYQLDNA 199 (362)
T ss_pred eEecCCCceEEEEc------CCceeeeehhhcC-ccceeeccCCc--ceeeEEcCCCCEEEEEe----ccEEEEEecccH
Confidence 66778887655554 2455555542111 23577775333 23389999999999998 678999988887
Q ss_pred eEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccc
Q 001314 85 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 164 (1102)
Q Consensus 85 HWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~ 164 (1102)
|=+. +|..+. ..+++.|..+.- |.+|- |++.+.+-|-+. .||+ +..
T Consensus 200 ~v~~--~i~~~~-r~l~~~~l~~~~--L~vG~-----------------d~~~i~~~D~ds--~~~~----------~~~ 245 (362)
T KOG0294|consen 200 SVFR--EIENPK-RILCATFLDGSE--LLVGG-----------------DNEWISLKDTDS--DTPL----------TEF 245 (362)
T ss_pred hHhh--hhhccc-cceeeeecCCce--EEEec-----------------CCceEEEeccCC--Cccc----------eee
Confidence 7322 332221 124556654432 33322 445555656554 2222 122
Q ss_pred cccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 165 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 165 l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
..-+.+|.+++|..++....++.+-+||.+.+|..+
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 345678999998887776667777999999999874
No 235
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.25 E-value=8.5 Score=43.29 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHH
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKA 802 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~ 802 (1102)
.|+.|+.++.+.|+ +++|++. |...++.|-+........-..|+.+...++| ++|+..
T Consensus 145 ~Y~~A~~l~~~~~~--y~~Ai~a-------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-------------~~A~~~ 202 (263)
T PRK10803 145 DYNAAIALVQDKSR--QDDAIVA-------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-------------DDAAYY 202 (263)
T ss_pred HHHHHHHHHHhcCC--HHHHHHH-------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-------------HHHHHH
Confidence 46666666555444 5665543 3333444422222234444455555555444 444444
Q ss_pred HHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 803 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 803 y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
|.. +...++.++ ...+....++..+.+.|++.+|..+|.+
T Consensus 203 f~~---------vv~~yP~s~-~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 203 FAS---------VVKNYPKSP-KAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHH---------HHHHCCCCc-chhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 332 222333222 2234455566666667777777776643
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=82.10 E-value=5.7 Score=45.14 Aligned_cols=89 Identities=19% Similarity=0.332 Sum_probs=59.2
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcce-eeeecCCccccceeeeeecCCCC-eEEEEEeeCCCCeEEEEEcc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER-SSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrh-geF~L~~~~~~~v~~L~Wn~DS~-iLAv~~~~~~~~~vqLWt~~ 82 (1102)
-+..|.||+||+.. +..+|+=+-|-|.- -=|.. =.+|.-|.|..||. +|++.. +...||.|..-
T Consensus 14 c~fSp~g~yiAs~~-------~yrlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~y---k~~~vqvwsl~ 79 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS-------RYRLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAY---KDPKVQVWSLV 79 (447)
T ss_pred eeECCCCCeeeeee-------eeEEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeee---ccceEEEEEee
Confidence 46789999999986 34666543333221 11222 12688999999997 455554 24489999999
Q ss_pred cceEEEEEEEEeccCCC-ceEEecCCCCc
Q 001314 83 NNHWYLKYEIRYLRRDG-IRFMWHPTKPL 110 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~-~~~~W~~e~pl 110 (1102)
.=.||-|- +-+ .++ .+.+|+|..-.
T Consensus 80 Qpew~ckI--deg-~agls~~~WSPdgrh 105 (447)
T KOG4497|consen 80 QPEWYCKI--DEG-QAGLSSISWSPDGRH 105 (447)
T ss_pred cceeEEEe--ccC-CCcceeeeECCCcce
Confidence 99999874 332 234 45899998644
No 237
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=82.10 E-value=76 Score=39.63 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=60.1
Q ss_pred CCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC-c-eEE
Q 001314 26 CPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-I-RFM 103 (1102)
Q Consensus 26 ~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~-~-~~~ 103 (1102)
...|=||.----=+-+=.++++.+..|++|+|...+.+..+.+ ...|.-|+.-+ |||-.......+ + ++.
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~----sg~i~EwDl~~----lk~~~~~d~~gg~IWsia 117 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL----SGSITEWDLHT----LKQKYNIDSNGGAIWSIA 117 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC----CceEEEEeccc----CceeEEecCCCcceeEEE
Confidence 3467677532233334455567788899999998899988876 67899998876 567777655443 2 355
Q ss_pred ecCCCCceEEEEeeCCcE
Q 001314 104 WHPTKPLQLICWTLDGQI 121 (1102)
Q Consensus 104 W~~e~pl~L~i~t~~g~~ 121 (1102)
=+|+... ++|++.+|.+
T Consensus 118 i~p~~~~-l~IgcddGvl 134 (691)
T KOG2048|consen 118 INPENTI-LAIGCDDGVL 134 (691)
T ss_pred eCCccce-EEeecCCceE
Confidence 5787754 8998888843
No 238
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=82.04 E-value=16 Score=42.88 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=55.9
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHH-hcchHHHHhcc------CCcHhHHHHHHHHHHHHhcccC-hHHHHHHHHHcCCHHH
Q 001314 727 ALKHIVSMGDSYHADCLNLMKKY-AQLFPLGLKLI------TDPAKMEQVLEAWADHLSDVKC-FEDAATTYFCCSSLEK 798 (1102)
Q Consensus 727 Al~hl~~~g~~~~deAie~~~~~-~~Ly~~AL~L~------~d~~~~~~i~~~yAd~L~~~~~-~eeAa~~Y~~ag~~ek 798 (1102)
...+|++||+ .++|.++++++ ++.|+.=|..+ .|++......+.+....-+... +-.=+.+|.+-+.+.|
T Consensus 269 ~a~~li~l~~--~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 269 YAERLIRLGD--HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHcCC--hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 3456888887 78888888643 34566555443 3666665555555444433221 1112223333333333
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 799 AMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 799 Al~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
|-+.+. .|-....+. .-+..+|..|.+.|+..+|.+++
T Consensus 347 A~~~le----------aAl~~~~s~----~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 347 ASEALE----------AALKLRPSA----SDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred HHHHHH----------HHHhcCCCh----hhHHHHHHHHHHcCChHHHHHHH
Confidence 333322 222222221 23556677777777777777765
No 239
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.94 E-value=10 Score=40.05 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=57.5
Q ss_pred CcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHH-----------HHHHHHHHcCCHHHHHHHHhhcC---C---ChH
Q 001314 762 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLK---L---GKD 824 (1102)
Q Consensus 762 d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~e-----------kAl~~y~~ag~W~~al~lA~~l~---~---~~~ 824 (1102)
..+..+..+...|+|+...|++++|...|.++-++- .-++....-++|..+.....+.. . +.+
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 566778889999999999999999999999886542 23355566778888765543321 0 111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 825 EVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 825 el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
-...+-.--|=.....|+|.+||+.|++
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 1111222222233356778888877766
No 240
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=81.73 E-value=6.9 Score=38.22 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=19.2
Q ss_pred chHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 752 LFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 752 Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+|.+++++ +|+.. .....+|..+...+++++|..+|..+
T Consensus 5 ~~~~~l~~--~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~ 43 (135)
T TIGR02552 5 TLKDLLGL--DSEQL-EQIYALAYNLYQQGRYDEALKLFQLL 43 (135)
T ss_pred hHHHHHcC--ChhhH-HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44555543 22222 33445555555556666665555443
No 241
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=81.68 E-value=15 Score=41.78 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=94.0
Q ss_pred eccCCCeEEEEeeccCCCCCCeEEEEecCCcceeee-------ecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 7 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-------DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 7 WrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF-------~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
=.|.|.+||++.- -.||-.||--=-+.|+| .|.+. ...|..+++|+||+-.+-+- +...+.+|
T Consensus 236 vSP~GRFia~~gF------TpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvS---kDG~wriw 305 (420)
T KOG2096|consen 236 VSPDGRFIAVSGF------TPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVS---KDGKWRIW 305 (420)
T ss_pred eCCCCcEEEEecC------CCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEe---cCCcEEEe
Confidence 3599999999873 35787777766666765 44442 23599999999999877664 34579999
Q ss_pred EcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCC
Q 001314 80 FFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP 158 (1102)
Q Consensus 80 t~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPP 158 (1102)
++.- .+-++|--.. .+.+ ..+.=....|+||.+ +.+|+ +.||--|++|.+---+..++=|
T Consensus 306 dtdV-rY~~~qDpk~-Lk~g~~pl~aag~~p~RL~l-sP~g~----------------~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 306 DTDV-RYEAGQDPKI-LKEGSAPLHAAGSEPVRLEL-SPSGD----------------SLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred eccc-eEecCCCchH-hhcCCcchhhcCCCceEEEe-CCCCc----------------EEEeecCCceEEEEcccCccch
Confidence 8852 2222321111 1111 111222344566666 44443 4455666666665555555444
Q ss_pred cccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEe
Q 001314 159 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 198 (1102)
Q Consensus 159 PM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~ 198 (1102)
-. +---...|.+++|++++. +++-.+++.+.++.
T Consensus 367 ~~---e~~h~~~Is~is~~~~g~---~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 367 EL---EDIHSTTISSISYSSDGK---YIATCGDRYVRVIR 400 (420)
T ss_pred hH---HHhhcCceeeEEecCCCc---EEeeecceeeeeec
Confidence 21 222356788999988764 35557777777765
No 242
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.59 E-value=6.9 Score=40.51 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 001314 844 GEAAKIALDYCGDVTNGISLLIDA 867 (1102)
Q Consensus 844 ~eAa~i~l~ylgD~e~AI~~y~~~ 867 (1102)
--|+.+++. +|+++.|..++-.+
T Consensus 107 ~~ag~c~L~-lG~~~~A~~aF~~A 129 (157)
T PRK15363 107 WAAAECYLA-CDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHH
Confidence 345666665 78888887765433
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.47 E-value=48 Score=41.94 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=67.3
Q ss_pred ccChHHHHHHHHHcCCHHHHH-----HHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 780 VKCFEDAATTYFCCSSLEKAM-----KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~~ekAl-----~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
.|+-++|..+=....-.+|=+ .+....++|++++..|+.-. ++ -=+.-..+.+.+.|+-.||.+- .-.+
T Consensus 697 ~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-sP----IGy~PFVe~c~~~~n~~EA~KY-iprv 770 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-SP----IGYLPFVEACLKQGNKDEAKKY-IPRV 770 (829)
T ss_pred ccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-CC----CCchhHHHHHHhcccHHHHhhh-hhcc
Confidence 455556666555555544432 55667778888888886532 11 1144456677788888888874 4558
Q ss_pred CCHHHHHHHHHHhcCHHHHHHHHHhcCCh
Q 001314 855 GDVTNGISLLIDARDWEEALRVAFMHRRE 883 (1102)
Q Consensus 855 gD~e~AI~~y~~~~~W~eA~rLa~~h~~~ 883 (1102)
++..+=+.+|.+.+.+.||..+|.+++..
T Consensus 771 ~~l~ekv~ay~~~~~~~eAad~A~~~rd~ 799 (829)
T KOG2280|consen 771 GGLQEKVKAYLRVGDVKEAADLAAEHRDG 799 (829)
T ss_pred CChHHHHHHHHHhccHHHHHHHHHHhcCh
Confidence 88888888999999999999988888643
No 244
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=81.25 E-value=39 Score=41.78 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCCeEEEEecCCccee----eeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc
Q 001314 25 KCPSIVFYERNGLERS----SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 100 (1102)
Q Consensus 25 ~~~~VvFFERNGLrhg----eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~ 100 (1102)
+...|.+|.+--..|. +|.-|.-..-.|.+|.|=+ ++.+-|-. ...+.+.+|+++--.=--+. +.++..-.+
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsa--sGDsT~r~Wdvk~s~l~G~~-~~~GH~~Sv 147 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSA--SGDSTIRPWDVKTSRLVGGR-LNLGHTGSV 147 (720)
T ss_pred CCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEc--cCCceeeeeeeccceeecce-eeccccccc
Confidence 3456777776554444 1222211123599999999 98888876 34568999998544311111 112211112
Q ss_pred -eEEecCCCCceEEEEeeCCcEEEEEEEEee----------------------------------eecC-Cc---EEEEE
Q 001314 101 -RFMWHPTKPLQLICWTLDGQITTYNFIWTT----------------------------------AVME-NS---TALVI 141 (1102)
Q Consensus 101 -~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~----------------------------------~~~d-~~---~vaVI 141 (1102)
++++++.+|..|+.|-.+|++.+-+..=.. ...+ .+ +|++-
T Consensus 148 kS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk 227 (720)
T KOG0321|consen 148 KSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK 227 (720)
T ss_pred chhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe
Confidence 489999999988888889999886655111 0000 12 22333
Q ss_pred eCC----------eEE-------eccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 142 DGS----------KIL-------VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 142 DG~----------~l~-------lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
|-+ .++ .|+++.+ |++.--+--.-...+-.|.|.-+.+.+.+.|-.+|++|++|+...
T Consensus 228 De~tlaSaga~D~~iKVWDLRk~~~~~r~e--p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 228 DESTLASAGAADSTIKVWDLRKNYTAYRQE--PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred ccceeeeccCCCcceEEEeecccccccccC--CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 422 244 4555665 555544333322234456666677677888888999999999864
No 245
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.11 E-value=25 Score=42.16 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=87.1
Q ss_pred hhcHHHHHHHHHHc---CCCc----H---HHHHHH---HHHHhcchHHHHhccCCcHhHH---------HH--HHHHHHH
Q 001314 721 LQRFENALKHIVSM---GDSY----H---ADCLNL---MKKYAQLFPLGLKLITDPAKME---------QV--LEAWADH 776 (1102)
Q Consensus 721 LkryekAl~hl~~~---g~~~----~---deAie~---~~~~~~Ly~~AL~L~~d~~~~~---------~i--~~~yAd~ 776 (1102)
.+.+|+|+..|.++ ++.. . -|-+|| -..- .-|.+|+++- |..++ ++ +..||-|
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi-~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI-ESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH-HHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHH
Confidence 67788998888764 2210 0 123333 2233 4577777764 33332 11 3355655
Q ss_pred Hhc---------ccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHH
Q 001314 777 LSD---------VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAA 847 (1102)
Q Consensus 777 L~~---------~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa 847 (1102)
+.. .+-|..=+..|++.++.++|++||.++ +.+ +.. + ...+..+|+-.++.+++.+|+
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra------i~~----~dt--e-~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA------ILL----GDT--E-GSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH------Hhc----ccc--c-hHHHHHHHHHHHHHHhHHHHH
Confidence 543 455777788999999999999999763 222 111 1 246788899999999999999
Q ss_pred HHHHHhcCCH----------HHH----HHHHHHhcCHHHHHHHHH
Q 001314 848 KIALDYCGDV----------TNG----ISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 848 ~i~l~ylgD~----------e~A----I~~y~~~~~W~eA~rLa~ 878 (1102)
+.|..|+... .+| ...+.+.++|++|-.-|.
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9998876522 122 234556667776655443
No 246
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=80.89 E-value=14 Score=42.08 Aligned_cols=107 Identities=16% Similarity=0.017 Sum_probs=63.7
Q ss_pred HHHHHhcccChHHHHHHHHHcCCHH---HHHHHHHHcCCHHHHHHHHhhcC-CChH-HHHHHHHHHHHHHHHcCChHHHH
Q 001314 773 WADHLSDVKCFEDAATTYFCCSSLE---KAMKAYRASGNWSGVLTVAGLLK-LGKD-EVAKLAQELCEELQALGKPGEAA 847 (1102)
Q Consensus 773 yAd~L~~~~~~eeAa~~Y~~ag~~e---kAl~~y~~ag~W~~al~lA~~l~-~~~~-el~~l~~~lA~~L~~~g~~~eAa 847 (1102)
-|-.+...+++++|.......++.| -++.+|...++.+.|-...+.+. .+++ -+..++............+.+|-
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 3455556677777777777766654 23477777777777766554442 1222 22334444433333344799999
Q ss_pred HHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHHh
Q 001314 848 KIALDYCGDV-------TNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 848 ~i~l~ylgD~-------e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
.+|-+....+ ..-..+++..++|+||..+...
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9998865553 1233466788999999887665
No 247
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=80.68 E-value=10 Score=39.30 Aligned_cols=23 Identities=9% Similarity=-0.130 Sum_probs=10.8
Q ss_pred HHHHHHHHhcccChHHHHHHHHH
Q 001314 770 LEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 770 ~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
+...|..+...++|++|..+|.+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~ 60 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEE 60 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444555554444443
No 248
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=80.52 E-value=37 Score=40.52 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.+....+.-+...++|++|..++...
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555666666666666655555444
No 249
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=80.40 E-value=65 Score=41.19 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=73.5
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
..|+|.++|.++-+-++ ....|.|. -|-.+.+|=-| -...|..+.|++||+.-+++++ ...|+|-.++
T Consensus 255 ~~L~fS~~G~~LlSGG~------E~VLv~Wq-~~T~~kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~---DNqI~li~~~ 322 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGR------EGVLVLWQ-LETGKKQFLPR--LGSPILHIVVSPDSDLYSLVLE---DNQIHLIKAS 322 (792)
T ss_pred ceeEEecCCceEeeccc------ceEEEEEe-ecCCCcccccc--cCCeeEEEEEcCCCCeEEEEec---CceEEEEecc
Confidence 36899999999988653 23555554 45555777433 3557999999999999999994 3468888887
Q ss_pred cceEEEEEEEEeccC---------CC--ceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 83 NNHWYLKYEIRYLRR---------DG--IRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 83 NYHWYLKqei~~~~~---------~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
+.- +|..|.-... .. ..++-|| .+-.+.+-+..|.+..|++.
T Consensus 323 dl~--~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 323 DLE--IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred chh--hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecc
Confidence 665 3544431111 11 2378888 33335555677888888876
No 250
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=31 Score=40.78 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=89.5
Q ss_pred cchHHHHhcc----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcC--------CHHHHHHHHHHcCCHHHHHHHHhh
Q 001314 751 QLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 751 ~Ly~~AL~L~----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag--------~~ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
+.|.+||.+. .-.+..-+.+-.-|.-|..-++.++|+++|..|. .|+.-+.||...|..++|+.+|..
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 3466666554 2222333455667899999999999999998775 477889999999999999999864
Q ss_pred c----CCChHHHHHHHHHHHHHHHHcCC-hHHHHHHHH-------HhcCCHHHHHHHHHHhcCHHHHHHHHHhcC--Chh
Q 001314 819 L----KLGKDEVAKLAQELCEELQALGK-PGEAAKIAL-------DYCGDVTNGISLLIDARDWEEALRVAFMHR--RED 884 (1102)
Q Consensus 819 l----~~~~~el~~l~~~lA~~L~~~g~-~~eAa~i~l-------~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~--~~d 884 (1102)
. +-+...++ |.- +..+...-. -+.|-+.|. .|++-+-.-.+++..-+.+++++.|..+|- .+|
T Consensus 394 ~~~~~~~sA~~Lt-L~g--~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 394 TIRLFQNSARSLT-LFG--TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred HHHHhhcchhhhh-hhc--ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 2 21211111 110 000000011 122333221 144555555667777788899999888762 222
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001314 885 LITKVKHASLECASSLIGEYKEGLEKVG 912 (1102)
Q Consensus 885 L~etv~~a~l~~a~~~~~el~e~~~~~~ 912 (1102)
. +.-.-|+.......|+++--+++.
T Consensus 471 ~---~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 471 V---NLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred c---HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2 222234444444555555555554
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=80.19 E-value=64 Score=36.96 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=101.8
Q ss_pred CeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEE
Q 001314 12 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 91 (1102)
Q Consensus 12 nlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqe 91 (1102)
.+||.++++. ....|+++-.+--+ --+.++. .+..|.-++-|.+|++||-.- .++.-|.+|.+-+-+ +-||
T Consensus 149 ~~LafPg~k~---GqvQi~dL~~~~~~-~p~~I~A-H~s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~--~l~E 219 (346)
T KOG2111|consen 149 SLLAFPGFKT---GQVQIVDLASTKPN-APSIINA-HDSDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGT--LLQE 219 (346)
T ss_pred eEEEcCCCcc---ceEEEEEhhhcCcC-CceEEEc-ccCceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCc--Eeee
Confidence 4677766553 24456655433222 2233332 234577788999999999753 667799999999998 6788
Q ss_pred EEeccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcc----ccccc
Q 001314 92 IRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM----YLFSL 165 (1102)
Q Consensus 92 i~~~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM----~~~~l 165 (1102)
++-+.... + ++.++|...+ |++.+.+|.+.++...=.....+.. --+|+...+.|-=. |+.++
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~~~~~~~----------SSl~~~~~~lpky~~S~wS~~~f 288 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTENTEDES----------SSLSFKRLVLPKYFSSEWSFAKF 288 (346)
T ss_pred eecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCCCCcccc----------ccccccccccchhcccceeEEEE
Confidence 88664333 4 5899998777 8887778888776554332222200 12222223334333 33445
Q ss_pred ccCC-ceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 166 KFPT-AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 166 ~~~~-~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
.+++ +..-++|..+. |+|.++..||+.+=+.+.
T Consensus 289 ~l~~~~~~~~~fg~~~--nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 289 QLPQGTQCIIAFGSET--NTVIAICADGSYYKFKFD 322 (346)
T ss_pred EccCCCcEEEEecCCC--CeEEEEEeCCcEEEEEec
Confidence 5544 34456675543 788898999887666554
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=80.04 E-value=9.6 Score=46.10 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=63.3
Q ss_pred ceeeccCCCeEEEEeeccCCC----CCCeEEEEecCCcceeeeecCC---ccccceeeeeecCCCCeEEEEEeeCCCCeE
Q 001314 4 VLEWMPSGANIAAVYDRKSEN----KCPSIVFYERNGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~----~~~~VvFFERNGLrhgeF~L~~---~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~v 76 (1102)
.|-|+.||-+++.-..+..-. .-..+-+| |-.|=++|. +....|..++|.+.|+-.||+.-......|
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf-----rireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF-----RIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEE-----EeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence 478999999998876553111 01223333 222333442 112359999999999999999866667789
Q ss_pred EEEEcc-cce-EEEEEEEEeccCCCceEEecCCCCc
Q 001314 77 KICFFS-NNH-WYLKYEIRYLRRDGIRFMWHPTKPL 110 (1102)
Q Consensus 77 qLWt~~-NYH-WYLKqei~~~~~~~~~~~W~~e~pl 110 (1102)
++|... |-| |-|-.+ ++.....++.|+|....
T Consensus 473 sfY~~e~~~~~~~lVk~--~dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKE--LDKKFANTVFWSPKGRF 506 (698)
T ss_pred eEEEeecCCCchhhhhh--hcccccceEEEcCCCcE
Confidence 999886 544 433322 22322256999998876
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=79.78 E-value=13 Score=45.22 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=57.5
Q ss_pred cCCcceeeeecCCccc-cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccC-------CC----ce
Q 001314 34 RNGLERSSFDINEQID-STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-------DG----IR 101 (1102)
Q Consensus 34 RNGLrhgeF~L~~~~~-~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~-------~~----~~ 101 (1102)
|--|..|.|=-|...+ ..+..+.=|+---+||+-+ ....|++|+.-.-.= --.+.+... +. .+
T Consensus 159 RlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt---~~g~VEfwDpR~ksr--v~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 159 RLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT---EDGVVEFWDPRDKSR--VGTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred EEEccccccccccccccccceeeeecCccceEEecc---cCceEEEecchhhhh--heeeecccccCCCccccccCcceE
Confidence 4457777777775333 3466777788888888765 256899998643221 011222211 11 24
Q ss_pred EEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 102 FMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 102 ~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
+.|+.. ++++.|||+.|.+++|++.
T Consensus 234 l~F~d~-gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 234 LKFRDD-GLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred EEecCC-ceeEEeeccCCcEEEEEcc
Confidence 788765 8999999999999999987
No 254
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=79.76 E-value=22 Score=43.70 Aligned_cols=122 Identities=22% Similarity=0.355 Sum_probs=72.4
Q ss_pred EEecCCCCceEEEEeeCCcEEEEEEEEeeeec-------CCcEEEEEeCCeEEeccCCC-----CCCCCccccccccc--
Q 001314 102 FMWHPTKPLQLICWTLDGQITTYNFIWTTAVM-------ENSTALVIDGSKILVTPLSL-----SLMPPPMYLFSLKF-- 167 (1102)
Q Consensus 102 ~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~-------d~~~vaVIDG~~l~lTp~r~-----a~VPPPM~~~~l~~-- 167 (1102)
+.|||-++.+|++.|..|++.. |.+... ....+.-|-|.+ +|.+|- -+.---.+...|++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~l----Wr~~a~gl~e~~~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINL----WRLTANGLPENEMTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred cccCCCChHHeeecccCceEEE----EEeccCCCCcccCCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeee
Confidence 8999999999999999998876 666522 123444455554 444443 22111112222222
Q ss_pred -------------CCceeEEEEecCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEec
Q 001314 168 -------------PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLG 234 (1102)
Q Consensus 168 -------------~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~ 234 (1102)
...|-++|+|+++. .+|.|.-||+|.+|+-...+.+. .+|++.. -..-..+.|.=
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr--~~AtVcKDg~~rVy~Prs~e~pv-~Eg~gpv---------gtRgARi~wac 774 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGR--RIATVCKDGTLRVYEPRSREQPV-YEGKGPV---------GTRGARILWAC 774 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCc--ceeeeecCceEEEeCCCCCCCcc-ccCCCCc---------cCcceeEEEEe
Confidence 12477899998775 47888999999999865444442 2333331 12334578875
Q ss_pred CceEEEE
Q 001314 235 SHLLLSV 241 (1102)
Q Consensus 235 ~~~ll~~ 241 (1102)
++.++.+
T Consensus 775 dgr~viv 781 (1012)
T KOG1445|consen 775 DGRIVIV 781 (1012)
T ss_pred cCcEEEE
Confidence 5554444
No 255
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=1.2e+02 Score=34.75 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=74.7
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCC---ccccceeeeeecCC--CCeEEEEEeeCCCCeE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE---QIDSTVELLKWNCM--SDLLAAVVRFEEYDSV 76 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~---~~~~~v~~L~Wn~D--S~iLAv~~~~~~~~~v 76 (1102)
+..+|-+.|.-+|+.. .+..|.+|+ +-+- |.|.+.. ..+..|-.+.|-.- |+|+|.... ...|
T Consensus 17 hdVs~D~~GRRmAtCS------sDq~vkI~d~~~~s--~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv 85 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCS------SDQTVKIWDSTSDS--GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTV 85 (361)
T ss_pred eeeeecccCceeeecc------CCCcEEEEeccCCC--CceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCce
Confidence 5789999999999975 467999999 4432 3444431 12345888888654 789998762 2258
Q ss_pred EEEEc-------ccceEEEEEEEEeccCCC-ceEEecCCC-CceEEEEeeCCcEEEEEE
Q 001314 77 KICFF-------SNNHWYLKYEIRYLRRDG-IRFMWHPTK-PLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 77 qLWt~-------~NYHWYLKqei~~~~~~~-~~~~W~~e~-pl~L~i~t~~g~~~~~~~ 126 (1102)
-+|.- .--+|-+--.+.= .+.. +.++|.|.. .+.|+....+|-+.+|+-
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 89976 2357766555532 2223 348888764 366777777898888874
No 256
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=14 Score=41.75 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred cchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHH--------HHHHHcCCHHHHHHHHh
Q 001314 751 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM--------KAYRASGNWSGVLTVAG 817 (1102)
Q Consensus 751 ~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl--------~~y~~ag~W~~al~lA~ 817 (1102)
.-|..|+++. ..|. -+.-....|--+...++|.+|+..|++.+..---. .....++-+-.|++++.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3566666665 1222 22334445555556677777777777776432111 22345566666777766
Q ss_pred hcC
Q 001314 818 LLK 820 (1102)
Q Consensus 818 ~l~ 820 (1102)
.+.
T Consensus 103 ~~~ 105 (459)
T KOG4340|consen 103 LLL 105 (459)
T ss_pred Hhc
Confidence 653
No 257
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=79.37 E-value=20 Score=41.18 Aligned_cols=122 Identities=18% Similarity=0.288 Sum_probs=76.1
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCC-eEEEEEcccceEEEEEEEEec----cCCCceEEecCCCCceEEEEeeCCcEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYD-SVKICFFSNNHWYLKYEIRYL----RRDGIRFMWHPTKPLQLICWTLDGQITTYN 125 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~-~vqLWt~~NYHWYLKqei~~~----~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~ 125 (1102)
.-+-|.=||...|+|.-++....+ .|+||+.-+.. |-+..- ..|-++++|||.+|.-|.-++.+|=+-+++
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEecccc----chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 355677788888888876533333 79999998876 323311 123256999999999677766666444332
Q ss_pred EEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCCCC
Q 001314 126 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 203 (1102)
Q Consensus 126 ~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~ 203 (1102)
..=+ --|+..+-| +-..++|..++|....=+ .|..+++..++.+|+|.+.+
T Consensus 195 ~~~d--~EeDaL~~v------------------------iN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 195 TKKD--NEEDALLHV------------------------INHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cCCC--cchhhHHHh------------------------hcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCC
Confidence 2111 112222222 223456778888775422 47888999999999997643
No 258
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=79.29 E-value=29 Score=45.50 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
..+++.||.+|... +.++|..||. +|+..|+..+++.+++.+=.. +...+++...+.+-+-..+.+.| +..
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~------KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~ 221 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLK------KAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTR 221 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHH------HHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cch
Confidence 46788899999999 9999999876 577778777765555553222 12223334444433333333333 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 001314 846 AAKIALDYCGDVTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 846 Aa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
++.++ .--..+|-++++|++++.+..
T Consensus 222 ~~~~~-------~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 222 LVGLL-------EDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hHHHH-------HHHHHHHhhhhhhhHHHHHHH
Confidence 33322 224566777777887776544
No 259
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=79.25 E-value=8.4 Score=49.23 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCC----HHHHH----HHHHHcCCHHHHHHHHhhc-CCChHHHHHHHHHHHHHHH
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSS----LEKAM----KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 838 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~----~ekAl----~~y~~ag~W~~al~lA~~l-~~~~~el~~l~~~lA~~L~ 838 (1102)
..+...|+-+...+.+++|...+..+-. +..|. .+..+.+..++|+..++++ ..+++ -.+....+|..|.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~ 165 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 4556678888888999999988888743 33443 3345667788888777664 22232 2346677899999
Q ss_pred HcCChHHHHHHHHHhc
Q 001314 839 ALGKPGEAAKIALDYC 854 (1102)
Q Consensus 839 ~~g~~~eAa~i~l~yl 854 (1102)
+.|+|++|..+|-+-+
T Consensus 166 ~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 166 EIGQSEQADACFERLS 181 (694)
T ss_pred HhcchHHHHHHHHHHH
Confidence 9999999999986633
No 260
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=79.05 E-value=82 Score=35.57 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=95.1
Q ss_pred ceeeccC--CCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPs--GnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
++.|.|+ --.|+++. .+..|-.+.=++++|.. +.++. ...|..+.-++||.++|-- .+...+.||..
T Consensus 153 cvrfsP~~~~p~Ivs~s------~DktvKvWnl~~~~l~~-~~~gh-~~~v~t~~vSpDGslcasG---gkdg~~~LwdL 221 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSAS------WDKTVKVWNLRNCQLRT-TFIGH-SGYVNTVTVSPDGSLCASG---GKDGEAMLWDL 221 (315)
T ss_pred EEEEcCCCCCcEEEEcc------CCceEEEEccCCcchhh-ccccc-cccEEEEEECCCCCEEecC---CCCceEEEEEc
Confidence 5789996 55777765 46799999999988865 23332 2359999999999999863 45568999998
Q ss_pred ccceEEEEEEEE-eccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 82 SNNHWYLKYEIR-YLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 82 ~NYHWYLKqei~-~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
.--+ .++ ++..+.+ ++.+.|..+- |+..|..+ +.+ |+.... ++||- |+.-.+-|
T Consensus 222 ~~~k-----~lysl~a~~~v~sl~fspnryw-L~~at~~s-IkI----wdl~~~-----~~v~~-------l~~d~~g~- 277 (315)
T KOG0279|consen 222 NEGK-----NLYSLEAFDIVNSLCFSPNRYW-LCAATATS-IKI----WDLESK-----AVVEE-------LKLDGIGP- 277 (315)
T ss_pred cCCc-----eeEeccCCCeEeeEEecCCcee-EeeccCCc-eEE----Eeccch-----hhhhh-------cccccccc-
Confidence 7644 233 3333443 5899998766 77766544 443 655421 12221 22222222
Q ss_pred ccccccccCCce-eEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 160 MYLFSLKFPTAV-TEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 160 M~~~~l~~~~~i-~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
..+...+. ...||+.++ .++.+=.+++.|.+|+.
T Consensus 278 ----s~~~~~~~clslaws~dG--~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 278 ----SSKAGDPICLSLAWSADG--QTLFAGYTDNVIRVWQV 312 (315)
T ss_pred ----ccccCCcEEEEEEEcCCC--cEEEeeecCCcEEEEEe
Confidence 22222222 134454443 46666688888887764
No 261
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.90 E-value=7.9 Score=48.38 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=61.7
Q ss_pred eeecc-CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 5 LEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 5 LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+.|.| -|+..|++.. ...|-.|+=--=++-+|.+-.. ...|.-+.|+++.+.||---+ ...|.+|.+..
T Consensus 182 V~fsp~~~~~F~s~~d------sG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~~lATGGR---DK~vkiWd~t~ 251 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHD------SGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNREWLATGGR---DKMVKIWDMTD 251 (839)
T ss_pred eeeccCCCceEEEecC------CceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCceeeecCC---CccEEEEeccC
Confidence 56888 6888888762 2344443311111122222211 125888999999999997642 22699999996
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEE
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 114 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i 114 (1102)
-.=..|+.|+....- .+++|-|+.+.+|+.
T Consensus 252 ~~~~~~~tInTiapv-~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 252 SRAKPKHTINTIAPV-GRVKWRPARSYHLAT 281 (839)
T ss_pred CCccceeEEeeccee-eeeeeccCccchhhh
Confidence 554555666543221 259999999987776
No 262
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=78.87 E-value=34 Score=40.36 Aligned_cols=150 Identities=11% Similarity=0.130 Sum_probs=80.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|||.+++++.- ++.=.+|+=+- +.|.-+-+.-...|-.++|++||.+.|--- -...=.+|++-.
T Consensus 266 ~VafHPsG~~L~Tasf------D~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tGG---lD~~~RvWDlRt 334 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASF------DSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATGG---LDSLGRVWDLRT 334 (459)
T ss_pred eeeecCCCceeeeccc------ccchhhccccc--chhhHhhcccccccceeEecCCCceeeccC---ccchhheeeccc
Confidence 4689999999999862 23333333221 111111111223599999999999988532 112345777655
Q ss_pred ceEEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCccc
Q 001314 84 NHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 161 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~ 161 (1102)
-. +++.+..... ..+.|+|.. ++|+.+.+++..-+ |+ ||..- +
T Consensus 335 gr----~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kV----WD---------------------LR~r~---~-- 379 (459)
T KOG0272|consen 335 GR----CIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKV----WD---------------------LRMRS---E-- 379 (459)
T ss_pred Cc----EEEEecccccceeeEeECCCc-eEEeecCCCCcEEE----ee---------------------ecccc---c--
Confidence 43 5555443322 458888854 43555444443332 32 22210 0
Q ss_pred ccccccCCc-eeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 162 LFSLKFPTA-VTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 162 ~~~l~~~~~-i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
.+.|.-.++ |.+|-|++.. ...++..--|+++-+|.-.
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~-g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQE-GYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred ceecccccchhhheEecccC-CeEEEEcccCcceeeecCC
Confidence 233333333 6689998843 3344544667888888743
No 263
>PRK14574 hmsH outer membrane protein; Provisional
Probab=78.74 E-value=15 Score=47.97 Aligned_cols=170 Identities=15% Similarity=0.031 Sum_probs=110.1
Q ss_pred hhhhchhHHHhhhcHHHHHHHHHHcC---CCc---HHHHHHHHHHHhcchHHHHhcc---CCcHhH-HHHHHHHHHHHhc
Q 001314 710 PLLMRYTIDLRLQRFENALKHIVSMG---DSY---HADCLNLMKKYAQLFPLGLKLI---TDPAKM-EQVLEAWADHLSD 779 (1102)
Q Consensus 710 ~~~rr~~Id~~LkryekAl~hl~~~g---~~~---~deAie~~~~~~~Ly~~AL~L~---~d~~~~-~~i~~~yAd~L~~ 779 (1102)
..+-.+-|....|+|+.|+..|.++- +.. ....+.+.... +.+++|+..+ .+|... -......|.-+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34555678888999999999998863 211 11224555566 8889999887 233222 2344455778888
Q ss_pred ccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 780 VKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
.++|.+|..+|.++-. +-.....|...++.++|+..+.++.....+.. .+.-++..+...+++.+|...|.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-NYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-HHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999832 11223567788999999998877633222222 23444555556777777888876
Q ss_pred Hhc----CCHHH---HHHHHHHhcCHHHHHHHHHhcC
Q 001314 852 DYC----GDVTN---GISLLIDARDWEEALRVAFMHR 881 (1102)
Q Consensus 852 ~yl----gD~e~---AI~~y~~~~~W~eA~rLa~~h~ 881 (1102)
+.+ ++.+- =+..+.+.+--.-|.+++.+|.
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 543 22322 2344556777788999999884
No 264
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=78.59 E-value=24 Score=36.29 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHh
Q 001314 854 CGDVTNGISLLIDA 867 (1102)
Q Consensus 854 lgD~e~AI~~y~~~ 867 (1102)
.|+++.|+..|-++
T Consensus 126 ~g~~~~A~~~~~~a 139 (168)
T CHL00033 126 QGDSEIAEAWFDQA 139 (168)
T ss_pred cccHHHHHHHHHHH
Confidence 56666666555444
No 265
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.37 E-value=82 Score=35.55 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=57.0
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHcCCH----------------HHH---HHHHhhcCCChHH-HHHHHHHHHHHHHHcCC
Q 001314 783 FEDAATTYFCCSSLEKAMKAYRASGNW----------------SGV---LTVAGLLKLGKDE-VAKLAQELCEELQALGK 842 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~ekAl~~y~~ag~W----------------~~a---l~lA~~l~~~~~e-l~~l~~~lA~~L~~~g~ 842 (1102)
..-|+++|...|+++.|+++....+.- +-| ++-+.. .+.+. +..||.....-.....+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchh
Confidence 446888888888888888776553321 111 122221 23322 23355555555556678
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHH
Q 001314 843 PGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 843 ~~eAa~i~l~ylgD~-------e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
+.+|--||.++++.+ ..-..+++..++|+||--+..
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999998866622 223345667788999976554
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.16 E-value=10 Score=37.77 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred cCChHHHHHHHHHhcCCHHHHHHHHHHh-cCHHHHHHHHHhcCChhhHHH
Q 001314 840 LGKPGEAAKIALDYCGDVTNGISLLIDA-RDWEEALRVAFMHRREDLITK 888 (1102)
Q Consensus 840 ~g~~~eAa~i~l~ylgD~e~AI~~y~~~-~~W~eA~rLa~~h~~~dL~et 888 (1102)
.+.+.+|..+|.+ .|+.++|++++++. ++.+.|++.|.+.+.+++-..
T Consensus 82 ~~l~~~~~~l~~k-~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~ 130 (140)
T smart00299 82 AKLYEEAVELYKK-DGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAE 130 (140)
T ss_pred cCcHHHHHHHHHh-hcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHH
Confidence 3444455554433 45555555555554 455555555555444454433
No 267
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=78.12 E-value=6.7 Score=48.10 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=52.8
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
+.|.|.=-|||... .+..|++.-=|=.|-=.|.+|+ +.....|+|++||..|||-+++ ..|.|-+..--
T Consensus 26 ~ewnP~~dLiA~~t------~~gelli~R~n~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kd---G~I~L~Dve~~ 94 (665)
T KOG4640|consen 26 IEWNPKMDLIATRT------EKGELLIHRLNWQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKD---GTIRLHDVEKG 94 (665)
T ss_pred EEEcCccchhheec------cCCcEEEEEeccceeEeccCCC--CccceeeeecCCCCEEEEEecC---CeEEEEEccCC
Confidence 57999999999965 4678999999977777776664 2223599999999999999843 45666655544
Q ss_pred e
Q 001314 85 H 85 (1102)
Q Consensus 85 H 85 (1102)
|
T Consensus 95 ~ 95 (665)
T KOG4640|consen 95 G 95 (665)
T ss_pred C
Confidence 4
No 268
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=78.08 E-value=6.8 Score=47.16 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=73.7
Q ss_pred eeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEee
Q 001314 52 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTT 130 (1102)
Q Consensus 52 v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~ 130 (1102)
|.-|+||+||++||-- .+..++.+|+..-|+ |-+.|..+....+ +++|=|+...++++ |..|.-.++-|.-+.
T Consensus 53 VN~LeWn~dG~lL~SG---SDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~-sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 53 VNCLEWNADGELLASG---SDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVL-SGAGDKLIKLFDLDS 126 (758)
T ss_pred ecceeecCCCCEEeec---CCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEE-eccCcceEEEEeccc
Confidence 8999999999999954 233489999988655 6677776655443 58898888887777 444433332222111
Q ss_pred e---ecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 131 A---VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 131 ~---~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
. +.|+| ++.|.-|+.+... +|.-+|-.+++ .++|-..-.||++--|.+-+
T Consensus 127 ~~~~~~d~~-----------------~~~~~~~~~cht~---rVKria~~p~~-PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 127 SKEGGMDHG-----------------MEETTRCWSCHTD---RVKRIATAPNG-PHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ccccccccC-----------------ccchhhhhhhhhh---hhhheecCCCC-CceEEEecCCcceeeecccC
Confidence 0 12222 2233344443321 34444544433 35666667888888877654
No 269
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=78.00 E-value=11 Score=44.39 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=14.1
Q ss_pred hchhHHHhhhcHHHHHHHHH
Q 001314 713 MRYTIDLRLQRFENALKHIV 732 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~ 732 (1102)
-+.+.-+++|+|++|+..-+
T Consensus 174 lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhhhhhhhcccchhHHHHHH
Confidence 34566678999998887433
No 270
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=77.95 E-value=41 Score=38.03 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=91.5
Q ss_pred eeecc-CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCcc-ccceeeeeecC-CCCeEEEEEeeCCCCeEEEEEc
Q 001314 5 LEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 5 LsWrP-sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~-~~~v~~L~Wn~-DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
++|-. +-...|+.+ .+..|..|+=--|.|.-+.--.|. ......|+||. |=.++|... .++..|++-++
T Consensus 202 Iaf~~~s~~~FASvg------aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~--~dS~~V~iLDi 273 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVG------ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA--MDSNKVVILDI 273 (364)
T ss_pred EEeccCccceEEEec------CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh--cCCceEEEEEe
Confidence 56655 334777765 467899999888888877766554 55788999997 456777665 34556776654
Q ss_pred ccceEEEEEEEEecc-CCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 82 SNNHWYLKYEIRYLR-RDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~-~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
-+=. .-..+... ...+ .++|+|..+.++.-..-+-+.+ .|+... +++. ++=-|
T Consensus 274 R~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal----iWDl~q-----------------~~~~-~~~dP 328 (364)
T KOG0290|consen 274 RVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL----IWDLQQ-----------------MPRE-NGEDP 328 (364)
T ss_pred cCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEE----EEeccc-----------------cccc-CCCCc
Confidence 3311 00000000 1112 4899999988444311111222 255432 1222 33456
Q ss_pred ccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEe
Q 001314 160 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 198 (1102)
Q Consensus 160 M~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~ 198 (1102)
|..+. ...-||.+.+++...+ - .++..++++.+.+
T Consensus 329 ilay~--a~~EVNqi~Ws~~~~D-w-iai~~~kkleiLR 363 (364)
T KOG0290|consen 329 ILAYT--AGGEVNQIQWSSSQPD-W-IAICFGKKLEILR 363 (364)
T ss_pred hhhhh--ccceeeeeeecccCCC-E-EEEEecCeeeEEe
Confidence 66666 6678999999876442 3 4456667766543
No 271
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=77.81 E-value=21 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=15.5
Q ss_pred hccccchHHHHHHHHHHHHHcCCH
Q 001314 1012 MSLTVGAKQELKSLVVFLVMLGEV 1035 (1102)
Q Consensus 1012 l~~~~~~~~ev~~Ll~~Lv~~~~~ 1035 (1102)
|+.+..-.+|+-.+++-|..++-.
T Consensus 466 L~~t~dPLe~A~kfl~pL~~~a~~ 489 (517)
T PF12569_consen 466 LLKTEDPLEEAMKFLKPLLELAPD 489 (517)
T ss_pred HhcCCcHHHHHHHHHHHHHHhCcc
Confidence 444455566677788888776654
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.78 E-value=56 Score=39.31 Aligned_cols=103 Identities=5% Similarity=-0.016 Sum_probs=58.6
Q ss_pred ceeeccCCC-eEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGn-lIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
.-+|.|.|+ +|+-+.-. +.+.+|-.++..+=+...++-. ...+..-.|++||.-||+.........|.++...
T Consensus 192 ~p~wSpDG~~~i~y~s~~---~~~~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYG---ERKPTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred eEEECCCCCcEEEEEEcc---CCCCEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 468999998 47654321 1357888888776555555421 1134557799999999988744333456555543
Q ss_pred cceEEEEEEEEeccCCCceEEecCCCCceEEEEe
Q 001314 83 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 116 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t 116 (1102)
.-.+ ++ |.........-.|+|..-. |++.+
T Consensus 266 ~g~~--~~-LT~~~~~d~~p~~SPDG~~-I~F~S 295 (419)
T PRK04043 266 TKTL--TQ-ITNYPGIDVNGNFVEDDKR-IVFVS 295 (419)
T ss_pred CCcE--EE-cccCCCccCccEECCCCCE-EEEEE
Confidence 3331 22 2211111133578886544 55533
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.60 E-value=56 Score=41.53 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcchHHHHhcc----CCcHh--HHHHHHHHHHHHhcccChHHHHH-HHHHcCCH----HHHHHHHHHcC
Q 001314 740 ADCLNLMKKYAQLFPLGLKLI----TDPAK--MEQVLEAWADHLSDVKCFEDAAT-TYFCCSSL----EKAMKAYRASG 807 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~----~d~~~--~~~i~~~yAd~L~~~~~~eeAa~-~Y~~ag~~----ekAl~~y~~ag 807 (1102)
+.=+++..+| ++|++|+++. +.++. .+.+...|-+||-..++|++||. .+...|+- +..+..+...+
T Consensus 360 ~Dhi~Wll~~-k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 360 EDHIDWLLEK-KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELD 437 (846)
T ss_pred chhHHHHHHh-hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccc
Confidence 3345666666 7777777766 23333 57889999999999999999874 44555553 33344444444
No 274
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=77.15 E-value=18 Score=43.06 Aligned_cols=106 Identities=20% Similarity=0.159 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHH
Q 001314 740 ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLT 814 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~ 814 (1102)
+-.+.++..- +.|+.|++++ .+|+.. -.. +.+|...++..+|++...++ +
T Consensus 173 ~~Ll~~l~~t-~~~~~ai~lle~L~~~~pev~----~~L-------------A~v~l~~~~E~~AI~ll~~a------L- 227 (395)
T PF09295_consen 173 DTLLKYLSLT-QRYDEAIELLEKLRERDPEVA----VLL-------------ARVYLLMNEEVEAIRLLNEA------L- 227 (395)
T ss_pred HHHHHHHhhc-ccHHHHHHHHHHHHhcCCcHH----HHH-------------HHHHHhcCcHHHHHHHHHHH------H-
Confidence 4457777776 7899999887 344321 112 33444556666776665442 2
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHH
Q 001314 815 VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRV 876 (1102)
Q Consensus 815 lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl----gD~---e~AI~~y~~~~~W~eA~rL 876 (1102)
...+.+ .+++...|+.|.+.++|+.|..+..+-. .++ ...+++|++.++|++|+..
T Consensus 228 --~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 228 --KENPQD----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred --HhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222223 4688889999999999999999875532 233 4578999999999999743
No 275
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=77.06 E-value=9.5 Score=32.60 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=8.8
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 001314 830 AQELCEELQALGKPGEAAKI 849 (1102)
Q Consensus 830 ~~~lA~~L~~~g~~~eAa~i 849 (1102)
...++..+...|++.+|...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~ 90 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEA 90 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33444444444444444443
No 276
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.74 E-value=13 Score=42.19 Aligned_cols=75 Identities=24% Similarity=0.243 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLID 866 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~ 866 (1102)
+..|.+.|.|+.|++....| +. .++ .....+.+|+-.+...|+|++|++.|.+ |+++.=.
T Consensus 122 AAAy~~Lg~~~~AVkDce~A------l~------iDp-~yskay~RLG~A~~~~gk~~~A~~aykK-------aLeldP~ 181 (304)
T KOG0553|consen 122 AAAYSKLGEYEDAVKDCESA------LS------IDP-HYSKAYGRLGLAYLALGKYEEAIEAYKK-------ALELDPD 181 (304)
T ss_pred HHHHHHhcchHHHHHHHHHH------Hh------cCh-HHHHHHHHHHHHHHccCcHHHHHHHHHh-------hhccCCC
Confidence 34677888888887765542 22 222 2345788899999999999999988643 4444444
Q ss_pred hcCHHHHHHHHHhcC
Q 001314 867 ARDWEEALRVAFMHR 881 (1102)
Q Consensus 867 ~~~W~eA~rLa~~h~ 881 (1102)
..-|.+.+++|.+.-
T Consensus 182 Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 182 NESYKSNLKIAEQKL 196 (304)
T ss_pred cHHHHHHHHHHHHHh
Confidence 446888888887753
No 277
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.64 E-value=26 Score=44.31 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=71.8
Q ss_pred eeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEE-eccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEe
Q 001314 52 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-YLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWT 129 (1102)
Q Consensus 52 v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~-~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~ 129 (1102)
|.+|.|+.+.=+|.--+ .-.|.||+.+. |..|. |...|- +|+.|||.+.--++-|+-+|.+.+ |+
T Consensus 372 ILDlSWSKn~fLLSSSM----DKTVRLWh~~~-----~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi----Ws 438 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSM----DKTVRLWHPGR-----KECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL----WS 438 (712)
T ss_pred heecccccCCeeEeccc----cccEEeecCCC-----cceeeEEecCCeeEEEEecccCCCcEeecccccceEE----ee
Confidence 89999999999998765 34799999985 44554 444455 579999999875666776777765 76
Q ss_pred eeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEE-EeCCceEEEec
Q 001314 130 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDL 199 (1102)
Q Consensus 130 ~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~v-l~~~~l~l~~~ 199 (1102)
+. |..+ +| -|.+ ..-|..|+|+|++.. ++| .-+|...||..
T Consensus 439 I~--d~~V---v~-----W~Dl----------------~~lITAvcy~PdGk~---avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 439 IS--DKKV---VD-----WNDL----------------RDLITAVCYSPDGKG---AVIGTFNGYCRFYDT 480 (712)
T ss_pred cC--cCee---Ee-----ehhh----------------hhhheeEEeccCCce---EEEEEeccEEEEEEc
Confidence 53 2222 22 2222 245789999998542 333 55677777774
No 278
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=75.62 E-value=19 Score=41.03 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=42.5
Q ss_pred hHHHhhhcHHHHHHHHHHcCC-CcHHHHHHHHHHHhcchHHHHhcc------CCcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 716 TIDLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI------TDPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~g~-~~~deAie~~~~~~~Ly~~AL~L~------~d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
.|-.+-|+|++|++.+.+.+. |..-.++....+. +-++.|-+.+ .++...-.+...|-.......++.+|..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKGGSLELLALAVQILLKM-NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHT-T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 344445566666666655432 0111222333344 4445554444 4566677788888776666667788877
Q ss_pred HHHHc
Q 001314 789 TYFCC 793 (1102)
Q Consensus 789 ~Y~~a 793 (1102)
+|...
T Consensus 189 ~f~El 193 (290)
T PF04733_consen 189 IFEEL 193 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 279
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=75.59 E-value=5.8 Score=33.78 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
...++..+|.-+...+++++|..+|.++
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5567777888888888888888877764
No 280
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.59 E-value=19 Score=43.74 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=73.9
Q ss_pred hcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcC--
Q 001314 722 QRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS-- 794 (1102)
Q Consensus 722 kryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag-- 794 (1102)
++|+.|+..|.++-.++.. =+...+. +.++++++.. .+|+. ..-.+.-|.-+...++|.+|..+|..|=
T Consensus 312 ~~~~~ai~~~~kaLte~Rt--~~~ls~l-k~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT--PDLLSKL-KEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC--HHHHHHH-HHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 5677777777665332211 1233444 5566666654 24444 2233344777778888888888888762
Q ss_pred ------CHHHHHHHHHHcCCHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 795 ------SLEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 795 ------~~ekAl~~y~~ag~W~~al~lA~~l~-~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
-|-...-||.+.|.+..|+.-|.... ++++- ..-+.+-|..|...++|..|...|.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~-~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF-IKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24445578888888888887665432 23333 33455556666666666666666543
No 281
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.16 E-value=10 Score=46.93 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHc
Q 001314 669 EAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 734 (1102)
Q Consensus 669 n~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~ 734 (1102)
++=||.|.+-|..-|. +||+.|=. .|+-..|...+++||.|+-||.++
T Consensus 468 ~ee~d~a~~~fr~Al~--------~~~rhYnA----------wYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALG--------VDPRHYNA----------WYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred hHHHHhHHHHHHhhhc--------CCchhhHH----------HHhhhhheeccchhhHHHHHHHhh
Confidence 3448888888887666 89998853 367788888899999999888876
No 282
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.67 E-value=1e+02 Score=37.18 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=31.7
Q ss_pred HHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 803 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 803 y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
|.+.+++=..-..+...+.+..++......-|++|-+.|...+++-=++
T Consensus 355 ~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3444444334344455566777777778888999999999877664333
No 283
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=74.32 E-value=23 Score=38.02 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHc
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.+...|..+...+++++|...|.++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~A 99 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQA 99 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555555443
No 284
>PRK11189 lipoprotein NlpI; Provisional
Probab=74.14 E-value=41 Score=38.28 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=24.2
Q ss_pred cchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 751 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 751 ~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+.|..|+..| .+|.. ..++...|..+...++|++|...|.++
T Consensus 78 g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 78 GLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666655 23322 345556666666666666666666555
No 285
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.86 E-value=15 Score=46.07 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=67.1
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
++.+.-|++|++|+-. .++.|-.|. .+|-...-|+ + ....|+.|+.+++|-.||-- ++...|.+|+.
T Consensus 539 ~cv~FHPNs~Y~aTGS------sD~tVRlWDv~~G~~VRiF~--G-H~~~V~al~~Sp~Gr~LaSg---~ed~~I~iWDl 606 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGS------SDRTVRLWDVSTGNSVRIFT--G-HKGPVTALAFSPCGRYLASG---DEDGLIKIWDL 606 (707)
T ss_pred ceEEECCcccccccCC------CCceEEEEEcCCCcEEEEec--C-CCCceEEEEEcCCCceEeec---ccCCcEEEEEc
Confidence 3578899999999953 356666665 5666666662 2 22379999999999999975 44568999999
Q ss_pred ccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEE
Q 001314 82 SNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 123 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~ 123 (1102)
+|-.= +|+.+.- .+. -++.++.+... |+++..+.++..
T Consensus 607 ~~~~~-v~~l~~H--t~ti~SlsFS~dg~v-Lasgg~DnsV~l 645 (707)
T KOG0263|consen 607 ANGSL-VKQLKGH--TGTIYSLSFSRDGNV-LASGGADNSVRL 645 (707)
T ss_pred CCCcc-hhhhhcc--cCceeEEEEecCCCE-EEecCCCCeEEE
Confidence 98541 1222211 122 23566555544 566544444443
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.75 E-value=0.3 Score=48.99 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhH
Q 001314 833 LCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 893 (1102)
Q Consensus 833 lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~ 893 (1102)
+++.+.+.|.+.+|+.+|.+ .|++++|++++.+.+.|++|+..|..++.+++...+....
T Consensus 76 ~~~~c~~~~l~~~a~~Ly~~-~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~ 135 (143)
T PF00637_consen 76 ALRLCEKHGLYEEAVYLYSK-LGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC 135 (143)
T ss_dssp HHHHHHTTTSHHHHHHHHHC-CTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH-cccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44566778999999998854 9999999999888899999999999998888877655443
No 287
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=73.53 E-value=3.7 Score=46.58 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=64.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
+.+|.|+|.-|-.+..+ +..|..+-=|-..-. -+|.|.. .+++.+.++||..-||..+.+=.|.||+...+.
T Consensus 96 ~~~WSPdgrhiL~tseF-----~lriTVWSL~t~~~~--~~~~pK~-~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 96 SISWSPDGRHILLTSEF-----DLRITVWSLNTQKGY--LLPHPKT-NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred eeeECCCcceEeeeecc-----eeEEEEEEeccceeE--Eeccccc-CceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 57999999877777644 355666666554433 3343322 478999999999999998876667777765544
Q ss_pred ceEEEEEEEEeccCCCceEEecCCCCceEEEEee
Q 001314 84 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 117 (1102)
Q Consensus 84 YHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~ 117 (1102)
|-|=.|...+.-|...+.|+|.+.. |+++-+
T Consensus 168 --W~ll~~f~~dT~DltgieWsPdg~~-laVwd~ 198 (447)
T KOG4497|consen 168 --WILLKEFKLDTIDLTGIEWSPDGNW-LAVWDN 198 (447)
T ss_pred --HHHHHhcCCCcccccCceECCCCcE-EEEecc
Confidence 3333333333223334777776554 666543
No 288
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=73.16 E-value=31 Score=39.59 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCC----HH-------HHHHHHHHhcCHHHHHHHHHh
Q 001314 829 LAQELCEELQALGKPGEAAKIALDYCGD----VT-------NGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa~i~l~ylgD----~e-------~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
....++..+.+.|++++|...+.+.+.. +. ....+|...+++++|+++..+
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555666667777777777665443321 11 234566677777777665544
No 289
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=18 Score=45.57 Aligned_cols=82 Identities=13% Similarity=-0.001 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC---HHHHHHHHHHhcCHHH
Q 001314 796 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD---VTNGISLLIDARDWEE 872 (1102)
Q Consensus 796 ~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD---~e~AI~~y~~~~~W~e 872 (1102)
..+-+.-.+..|+=++|..+.+....++ +.++.--+..|.+.+++++-.+..-. -.. +.==|..|++.++-+|
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fkipd---Kr~~wLk~~aLa~~~kweeLekfAks-kksPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPD---KRLWWLKLTALADIKKWEELEKFAKS-KKSPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcc---hhhHHHHHHHHHhhhhHHHHHHHHhc-cCCCCCchhHHHHHHhcccHHH
Confidence 3456667778888889999988887764 34677778888889999886554321 111 3456788899999999
Q ss_pred HHHHHHhcC
Q 001314 873 ALRVAFMHR 881 (1102)
Q Consensus 873 A~rLa~~h~ 881 (1102)
|-.-+.+-+
T Consensus 763 A~KYiprv~ 771 (829)
T KOG2280|consen 763 AKKYIPRVG 771 (829)
T ss_pred HhhhhhccC
Confidence 987766654
No 290
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=9.6 Score=42.30 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
..+...+|-.|+..++|++|..+|++.
T Consensus 86 ~RV~~lkam~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 86 KRVGKLKAMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred hhHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 456778899999998888888888875
No 291
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.85 E-value=1.4e+02 Score=35.58 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=67.0
Q ss_pred ceEEecCCCCceEEEEeeCCcEEEEEEEEeee---------------ecCCcEEEE--EeCCeEEeccCCCCCCCCcccc
Q 001314 100 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---------------VMENSTALV--IDGSKILVTPLSLSLMPPPMYL 162 (1102)
Q Consensus 100 ~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~---------------~~d~~~vaV--IDG~~l~lTp~r~a~VPPPM~~ 162 (1102)
.+..+||..-+ |..+|.+|.+-+++..-..+ .+++|...| -|-..|++=.||+-. .+
T Consensus 351 ts~~fHpDgLi-fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~ 424 (506)
T KOG0289|consen 351 TSAAFHPDGLI-FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NF 424 (506)
T ss_pred EEeeEcCCceE-EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----cc
Confidence 35789997655 88889999999877653222 468885544 333339999999975 66
Q ss_pred cccccCCc--eeEEEEecCCCCceEEEEEeCCceEEEecCC-CCccccc
Q 001314 163 FSLKFPTA--VTEMAFYSKSSKNCLAAILSDGCLCVVDLPA-PDMLEDL 208 (1102)
Q Consensus 163 ~~l~~~~~--i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~-~~~~~~l 208 (1102)
..+.++.. |+.+.|-.++. .++ .....+.+|.... ...|.+.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt--~L~--~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGT--YLG--IAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred ceeeccccccceeEEEcCCCC--eEE--eecceeEEEEEecccccceee
Confidence 77777776 99999977654 222 3366788877642 3455433
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=72.78 E-value=1.5e+02 Score=33.64 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=27.4
Q ss_pred CCCCcccccccccCCceeEEEEecCCCC----ceEEEEEeCCceEEEec
Q 001314 155 LMPPPMYLFSLKFPTAVTEMAFYSKSSK----NCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 155 ~VPPPM~~~~l~~~~~i~~vaf~~~~~~----~~~a~vl~~~~l~l~~~ 199 (1102)
++||+|++ -..+...|..+.|...... ..+.|+.-.|.|.=|-+
T Consensus 79 ~I~p~~~~-~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 79 VIPPAMSF-PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred EcCccccc-CCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 46888865 3456677888888765421 23566666666655554
No 293
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=72.16 E-value=1.9e+02 Score=33.21 Aligned_cols=110 Identities=14% Similarity=0.193 Sum_probs=69.6
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee---cCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD---INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~---L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
..+.-|+|-+.|... +...|-+|+.---..|-|+ ++.+......+|++++||..+-|-+. .+.+.+-+
T Consensus 145 i~AfDp~GLifA~~~------~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lD 215 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN------GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLD 215 (311)
T ss_pred ceeECCCCcEEEEec------CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEE
Confidence 456789998888765 2338889988777667554 44344567999999999999888752 23233322
Q ss_pred cccceEEEEEEEEeccCCC---ceEEecCCCCceEEEEeeCCcEEEEE
Q 001314 81 FSNNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYN 125 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~~~---~~~~W~~e~pl~L~i~t~~g~~~~~~ 125 (1102)
. |+=-+|+........+ +...+.|+... ++.+..+|.+.+++
T Consensus 216 A--f~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 216 A--FDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWN 260 (311)
T ss_pred c--cCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEE
Confidence 2 1112566665544333 44677887766 55556667776644
No 294
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.07 E-value=59 Score=38.34 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=93.2
Q ss_pred CCceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 2 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 2 e~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
+..++..++|+++|+-. .+..+..|| .+=+.--++ +. ....|.+|.+++||..||-+. .+...+|.
T Consensus 147 ~k~vaf~~~gs~latgg------~dg~lRv~~~Ps~~t~l~e--~~-~~~eV~DL~FS~dgk~lasig----~d~~~VW~ 213 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGG------TDGTLRVWEWPSMLTILEE--IA-HHAEVKDLDFSPDGKFLASIG----ADSARVWS 213 (398)
T ss_pred ceEEEEcCCCCEeeecc------ccceEEEEecCcchhhhhh--Hh-hcCccccceeCCCCcEEEEec----CCceEEEE
Confidence 34677888999999854 345666666 443322221 11 123599999999999999886 56888998
Q ss_pred cccce-EEEEEEEE-eccCCCc-eEEe--cCCCC-ceEEEEeeC-CcEEEEE-EEEee-------------------eec
Q 001314 81 FSNNH-WYLKYEIR-YLRRDGI-RFMW--HPTKP-LQLICWTLD-GQITTYN-FIWTT-------------------AVM 133 (1102)
Q Consensus 81 ~~NYH-WYLKqei~-~~~~~~~-~~~W--~~e~p-l~L~i~t~~-g~~~~~~-~~w~~-------------------~~~ 133 (1102)
+.--| | |+.. ++..... .+.+ |+..+ ++|+..+.. |.+..++ ..|+- +++
T Consensus 214 ~~~g~~~---a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 214 VNTGAAL---ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred eccCchh---hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 86653 2 1111 1111111 2344 33333 333333333 2333333 22322 255
Q ss_pred CCc-EEEE--EeCCeEEeccCCCCCCCCcccccccc-cCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 134 ENS-TALV--IDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 134 d~~-~vaV--IDG~~l~lTp~r~a~VPPPM~~~~l~-~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
++| .+|| .||+-..+--++...+ .+.=+ -...|..|.|+|+.. .++-+.++.+..+..+.
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~lq~~-----~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSLQRL-----QYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCCcEEEEeccCCcEEEEEeceeeee-----EeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 555 4443 5666555444443211 11001 122588999999653 33445677777776653
No 295
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=71.87 E-value=11 Score=44.27 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhh
Q 001314 1021 ELKSLVVFLVMLGEVDTARKLQDTGETFQLSQMAAIKLAEDTMSIDIIN 1069 (1102)
Q Consensus 1021 ev~~Ll~~Lv~~~~~e~A~~lQ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 1069 (1102)
.+-.|.+-|..-|-+|.=|++-++|.+ +.=-++..=|+.|.+..|+
T Consensus 297 ~~~~~f~~iY~~~d~d~rram~KSf~e---S~gt~lstnw~~v~~~~~e 342 (356)
T PLN03088 297 ALNKFFREIYQNADEDTRRAMMKSFVE---SNGTVLSTNWKEVGSKKIE 342 (356)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCeEEeccHHHhcCCccc
Confidence 467777777777777777777776543 3223345555555555554
No 296
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.85 E-value=8 Score=48.29 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=53.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+|+..|-|.++|+.. +...|.+|+ .||.++++| .++ ...|..|.++.||.|||+- .....|+||+.-
T Consensus 582 al~~Sp~Gr~LaSg~------ed~~I~iWDl~~~~~v~~l--~~H-t~ti~SlsFS~dg~vLasg---g~DnsV~lWD~~ 649 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGD------EDGLIKIWDLANGSLVKQL--KGH-TGTIYSLSFSRDGNVLASG---GADNSVRLWDLT 649 (707)
T ss_pred EEEEcCCCceEeecc------cCCcEEEEEcCCCcchhhh--hcc-cCceeEEEEecCCCEEEec---CCCCeEEEEEch
Confidence 688999999999954 577899998 677888886 433 4469999999999999985 334589999763
No 297
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.46 E-value=18 Score=40.74 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=52.7
Q ss_pred ccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH--
Q 001314 780 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-- 857 (1102)
Q Consensus 780 ~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~-- 857 (1102)
...|+.|..++...|+|++|+..|.. +...++.+. ........+|+.+...|+|.+|...|..++..+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~---------fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQN---------FVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34456666565666778888777543 223344332 123456778999999999999999886655321
Q ss_pred ----HHH----HHHHHHhcCHHHHHHH
Q 001314 858 ----TNG----ISLLIDARDWEEALRV 876 (1102)
Q Consensus 858 ----e~A----I~~y~~~~~W~eA~rL 876 (1102)
..| ..+|.+.+++++|...
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 122 2344566666666653
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.28 E-value=0.44 Score=47.73 Aligned_cols=65 Identities=11% Similarity=0.038 Sum_probs=51.5
Q ss_pred HHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC
Q 001314 773 WADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGK 842 (1102)
Q Consensus 773 yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~ 842 (1102)
.++.+.+.+.|++|..+|.+.|++++|++++...++|.+|+..|...+.+ ++...+++.+.+.+.
T Consensus 76 ~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~-----~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 76 ALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDP-----ELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSS-----HHHHHHHHHHCTSTC
T ss_pred HHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcH-----HHHHHHHHHHHhcCc
Confidence 34556777889999999999999999999977778999999999887532 466777777665554
No 299
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.65 E-value=2e+02 Score=35.38 Aligned_cols=90 Identities=21% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHcC-------------CHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 786 AATTYFCCSSLEKAMKAYRASG-------------NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 786 Aa~~Y~~ag~~ekAl~~y~~ag-------------~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
.+..|...++++.|+..|.++. ..++++..+....+-..+..+-....+..+...|+|..|.+-|-+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344555555555555554422 233343333332222223333444455666666677776666644
Q ss_pred hc-CCHHHHH------HHHHHhcCHHHHHH
Q 001314 853 YC-GDVTNGI------SLLIDARDWEEALR 875 (1102)
Q Consensus 853 yl-gD~e~AI------~~y~~~~~W~eA~r 875 (1102)
-+ .||+.|+ -||.+.+++.+|+.
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 22 2333332 34445555555544
No 300
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=70.47 E-value=31 Score=40.68 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
+..|.+.|||-...++-+..-+..|+-.|+++.|++.|.. .+.+|.+++....| ...+..++..+.-.+.|..
T Consensus 221 RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~------tl~LAielg~r~vE-AQscYSLgNtytll~e~~k 293 (639)
T KOG1130|consen 221 RLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL------TLNLAIELGNRTVE-AQSCYSLGNTYTLLKEVQK 293 (639)
T ss_pred HHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH------HHHHHHHhcchhHH-HHHHHHhhhHHHHHHHHHH
Confidence 4577888999998888888889999999999999999876 67778777644333 2356666665544444444
Q ss_pred HHH
Q 001314 846 AAK 848 (1102)
Q Consensus 846 Aa~ 848 (1102)
|..
T Consensus 294 AI~ 296 (639)
T KOG1130|consen 294 AIT 296 (639)
T ss_pred HHH
Confidence 333
No 301
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=70.46 E-value=20 Score=44.47 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=37.5
Q ss_pred cchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcC
Q 001314 751 QLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 794 (1102)
Q Consensus 751 ~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag 794 (1102)
.||++||+.. .|+..+.|+.+||+.=++-|--..|..+|++|.
T Consensus 571 dLFEqaL~~C-pp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 571 DLFEQALDGC-PPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5799999954 478889999999999999999999999999975
No 302
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=70.37 E-value=19 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 001314 830 AQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 830 ~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
...+|..+.+.|++.+|...+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHH
Confidence 344444444555555555444
No 303
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=69.61 E-value=14 Score=33.29 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH--HHhcCCH----HHHHHHHHHhcCHHHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIA--LDYCGDV----TNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~--l~ylgD~----e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
.....+|.-+.+.|+|.+|..++ .+.-+.. -...++|.+.++|++|+..-.
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35556899999999999999988 2211111 124678889999999987543
No 304
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=69.58 E-value=23 Score=45.25 Aligned_cols=116 Identities=21% Similarity=0.284 Sum_probs=68.5
Q ss_pred hhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc----CCcHhHHHHHHH
Q 001314 697 EFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEA 772 (1102)
Q Consensus 697 EYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~----~d~~~~~~i~~~ 772 (1102)
||+|.+.-++.+ ..+-+.-.+-.|+|++|+.+|.-+|+ +|.|++.+.+. -.+++-.. .++++...+...
T Consensus 613 ~f~~~~~~~~~i--~~~vA~~a~~~G~~~~sI~LY~lag~--yd~al~link~---LS~~l~~~~~~~~n~erl~~La~~ 685 (835)
T KOG2168|consen 613 EFLPLIEDLQKI--ILEVASEADEDGLFEDAILLYHLAGD--YDKALELINKL---LSQVLHSPTLGQSNKERLGDLALS 685 (835)
T ss_pred hhccchhhHHHH--HHHHHHHHHhcCCHHHHHHHHHHhhh--hhHHHHHHHHH---HHHHHhhcccCCcchhhHHHHHHH
Confidence 446644333333 12223333457999999999999988 89999998664 44454443 255555667777
Q ss_pred HHHHHhcccChHHHHHHHHHcCCHHHHHHHH--HHcCCHHHHHHHHhhcC
Q 001314 773 WADHLSDVKCFEDAATTYFCCSSLEKAMKAY--RASGNWSGVLTVAGLLK 820 (1102)
Q Consensus 773 yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y--~~ag~W~~al~lA~~l~ 820 (1102)
.++.|.+++- .-|-..|.-..-.-+-+..+ ++.|.|++|+.+...+.
T Consensus 686 ~~~~y~~~~~-~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 686 MNDIYESNKG-DSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7777765442 23333333332222333333 34567999999987753
No 305
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=69.56 E-value=1.9e+02 Score=38.18 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH--------hcCCHHHHHHHHHHhcCHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALD--------YCGDVTNGISLLIDARDWEEALRV 876 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~--------ylgD~e~AI~~y~~~~~W~eA~rL 876 (1102)
.....+++..-+.|+|..|.++|-+ ..+.+..|+ +-|..+.|.+|+..
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~-~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV-MECDNGKYKEALDA 652 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 4677788888889999999998822 123345554 34566678888753
No 306
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.50 E-value=77 Score=41.73 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCeEEEEecCC-cc--eeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccC--CC-
Q 001314 26 CPSIVFYERNG-LE--RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG- 99 (1102)
Q Consensus 26 ~~~VvFFERNG-Lr--hgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~--~~- 99 (1102)
...|..|.=+| |+ |.. ......|..++.|.||.+|+.-. ...-|.+|++.+-.= =++|..... .+
T Consensus 108 ~ghvl~~d~~~nL~~~~~n----e~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~--l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 108 HGHVLLSDMTGNLGPLHQN----ERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKI--LKVITEHGAPVTGV 178 (1206)
T ss_pred chhhhhhhhhcccchhhcC----CccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcc--eeeeeecCCccceE
Confidence 34666666677 65 322 12234699999999999999876 245699999999551 235544322 22
Q ss_pred ceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 100 IRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 100 ~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
+.+.|...+. .+..+-.+|.+....|.
T Consensus 179 i~v~~t~~nS-~llt~D~~Gsf~~lv~n 205 (1206)
T KOG2079|consen 179 IFVGRTSQNS-KLLTSDTGGSFWKLVFN 205 (1206)
T ss_pred EEEEEeCCCc-EEEEccCCCceEEEEec
Confidence 4568877666 34444456665444443
No 307
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.25 E-value=42 Score=42.26 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=37.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeee-cC--C--cc---ccceeeeeecCCCCeEEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD-IN--E--QI---DSTVELLKWNCMSDLLAAVV 68 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~-L~--~--~~---~~~v~~L~Wn~DS~iLAv~~ 68 (1102)
.-+|.|+|.+|++..+ +..++|.-+..= .|++- ++ . .. +..|..|.|++||.-+|++.
T Consensus 401 ~PsWspDG~~lw~v~d------g~~~~~v~~~~~-~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 401 RPSWSLDADAVWVVVD------GNTVVRVIRDPA-TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CceECCCCCceEEEec------CcceEEEeccCC-CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE
Confidence 4689999999999863 223555544321 23331 22 1 11 23599999999999999987
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=69.09 E-value=2.1e+02 Score=34.47 Aligned_cols=80 Identities=10% Similarity=0.033 Sum_probs=42.0
Q ss_pred CeEEEEec-CCcceeeeecCCcc---------ccceeeeeecCCCC-eEEEEEeeCCCCeEEEEEcccceEEEEEEEEec
Q 001314 27 PSIVFYER-NGLERSSFDINEQI---------DSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 95 (1102)
Q Consensus 27 ~~VvFFER-NGLrhgeF~L~~~~---------~~~v~~L~Wn~DS~-iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~ 95 (1102)
..+++|.+ +|-++.+.-+-... ...+..-.|++||+ ++++..-......|.+++..... ...|..
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---~~~lt~- 230 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---KEKIAS- 230 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---EEEEec-
Confidence 46777776 45444443332110 11356799999999 46654322124456666665543 233322
Q ss_pred cCCC-ceEEecCCCCc
Q 001314 96 RRDG-IRFMWHPTKPL 110 (1102)
Q Consensus 96 ~~~~-~~~~W~~e~pl 110 (1102)
.... ....|+|....
T Consensus 231 ~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 231 SQGMLVVSDVSKDGSK 246 (419)
T ss_pred CCCcEEeeEECCCCCE
Confidence 1111 23689887655
No 309
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=68.64 E-value=25 Score=36.74 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.5
Q ss_pred ceeEEEEecCC----CCceEEEEEeCCceEEEecCC
Q 001314 170 AVTEMAFYSKS----SKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 170 ~i~~vaf~~~~----~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.|..+++||.+ .+..+|++++++.|.+|.-+.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999843 345688989999999998653
No 310
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=68.47 E-value=50 Score=30.84 Aligned_cols=49 Identities=27% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC---C-------HHHHHHHHHHhcCHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALDYCG---D-------VTNGISLLIDARDWEEALRV 876 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ylg---D-------~e~AI~~y~~~~~W~eA~rL 876 (1102)
.....+|..+.+.|+|.+|...|.+.+. + .-....+|.+.+++++|+..
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH
Confidence 3455577778888888888887755332 1 12333455555666666543
No 311
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.34 E-value=7.7 Score=34.29 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
-..+...|.-+...+++++|..+|.+|
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666677777777777777666553
No 312
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=68.28 E-value=72 Score=38.63 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 855 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylg 855 (1102)
+-+..+|..+|+..+|++.+.++ +. .. +.. .-+-..+|+.|.+.|++.+|.+++.+|+.
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~ka------l~---l~---P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKA------LA---LD---PNS-PLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH------Hh---cC---CCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 55667888888888888887762 22 11 211 34667789999999999999999877754
No 313
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=67.23 E-value=43 Score=39.34 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=59.1
Q ss_pred eecc-CCCeEEEEeeccCCCCCCeEEEEe--cCCcceeeeecC----C-ccccceeeeeecCCCCeEEEEEeeCCCCeEE
Q 001314 6 EWMP-SGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDIN----E-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 77 (1102)
Q Consensus 6 sWrP-sGnlIA~~qr~~~~~~~~~VvFFE--RNGLrhgeF~L~----~-~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vq 77 (1102)
..++ ++|.+|+.+ .+++|.+|- |+--.-|.=++- . ..+..|+...||++|++||-- .+...|.
T Consensus 20 dfq~n~~~~laT~G------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg---~D~g~v~ 90 (434)
T KOG1009|consen 20 DFQKNSLNKLATAG------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG---GDGGEVF 90 (434)
T ss_pred EeccCcccceeccc------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec---CCCceEE
Confidence 3455 556888865 356777663 332222111111 1 123359999999999999964 5567899
Q ss_pred EEEcc--------------cceEEEEEEEEeccCCCceEEecCCCCc
Q 001314 78 ICFFS--------------NNHWYLKYEIRYLRRDGIRFMWHPTKPL 110 (1102)
Q Consensus 78 LWt~~--------------NYHWYLKqei~~~~~~~~~~~W~~e~pl 110 (1102)
||--+ +=.|-.|..++.-..+..-+.|.|...+
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 99887 4557777766654444344788776654
No 314
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=66.98 E-value=87 Score=42.42 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChH
Q 001314 765 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 844 (1102)
Q Consensus 765 ~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~ 844 (1102)
+.+.+|..||+||..+.+-+.|-.+.. .|++| +++.+..++....|..-.+.|+.+
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~------rAL~~------------------lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLK------RALKS------------------LPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHH------HHHhh------------------cchhhhHHHHHHHHHHHhhcCCch
Confidence 467899999999998876555544332 33333 223344556666666555555555
Q ss_pred HHHHHHHH
Q 001314 845 EAAKIALD 852 (1102)
Q Consensus 845 eAa~i~l~ 852 (1102)
-+-.+|..
T Consensus 1618 RGRtlfEg 1625 (1710)
T KOG1070|consen 1618 RGRTLFEG 1625 (1710)
T ss_pred hhHHHHHH
Confidence 55555543
No 315
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.96 E-value=3.7e+02 Score=36.13 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 895 ECASSLIGEYKEGLEKVGKYLTRYLAVRQ 923 (1102)
Q Consensus 895 ~~a~~~~~el~e~~~~~~k~~~RL~~lR~ 923 (1102)
+.|+.+..|.++...+-+..++||.+|..
T Consensus 1689 ~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~ 1717 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEKLDRLKDLEL 1717 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888888888888763
No 316
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=66.86 E-value=89 Score=34.58 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=65.0
Q ss_pred eEEEEeeCCcEEEEEEE----Eee----------e-ecCCcEEEEEeCCeEEeccCCCCCCCCccc---cc-----cccc
Q 001314 111 QLICWTLDGQITTYNFI----WTT----------A-VMENSTALVIDGSKILVTPLSLSLMPPPMY---LF-----SLKF 167 (1102)
Q Consensus 111 ~L~i~t~~g~~~~~~~~----w~~----------~-~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~---~~-----~l~~ 167 (1102)
+|++||.+| ++.|+.. |.. . ..+.+.+.|+=|..|.+-|+..-..+++.. .. ...+
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 87 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL 87 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc
Confidence 588888877 7777761 111 1 235566666556788888887765444322 11 1244
Q ss_pred CCceeEEEEe--cCCCCceEEEEEeCCceEEEecCCCCccccccCCceeeeeeccccccCceEEEEEecCceEE
Q 001314 168 PTAVTEMAFY--SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 239 (1102)
Q Consensus 168 ~~~i~~vaf~--~~~~~~~~a~vl~~~~l~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll 239 (1102)
+..-....|. .........++..+++|.+|+|..........-+++. . .+.+..++|+++.-++
T Consensus 88 ~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----l----p~~~~~i~~~~~~i~v 153 (275)
T PF00780_consen 88 PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----L----PDPPSSIAFLGNKICV 153 (275)
T ss_pred cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----c----CCCcEEEEEeCCEEEE
Confidence 4444444455 2223334455677789999999764221000011221 1 2467888999655333
No 317
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=66.57 E-value=34 Score=47.10 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=98.4
Q ss_pred hhcHHH-HHHHHHHcCCCcHHHHHHHHH------HHhcchHHHH--------hcc---CCcHhHHHHHHHHHHHHhcccC
Q 001314 721 LQRFEN-ALKHIVSMGDSYHADCLNLMK------KYAQLFPLGL--------KLI---TDPAKMEQVLEAWADHLSDVKC 782 (1102)
Q Consensus 721 Lkryek-Al~hl~~~g~~~~deAie~~~------~~~~Ly~~AL--------~L~---~d~~~~~~i~~~yAd~L~~~~~ 782 (1102)
-+++|| |-.+|.+- .+..|.|+=|+. -- +||+-+. ..+ ...++-|.+..+=|--|..+++
T Consensus 1213 r~ciEKlAK~af~kn-~dP~DaALfYLALkKk~Vl~-gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhR 1290 (2439)
T KOG1064|consen 1213 RKCIEKLAKAAFQKK-RDPLDAALFYLALKKKQVLW-GLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHR 1290 (2439)
T ss_pred HHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHH-HHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHH
Confidence 335665 55567774 344677777652 12 4666555 122 2445567777778889999999
Q ss_pred hHHHHHHHHHcCCHHHHHHHH-HHcCCHHHHHHHHhhcCCChH-HHHHHHHHHHH-HHHHcCChHHHHHHHHHhcCCHHH
Q 001314 783 FEDAATTYFCCSSLEKAMKAY-RASGNWSGVLTVAGLLKLGKD-EVAKLAQELCE-ELQALGKPGEAAKIALDYCGDVTN 859 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~ekAl~~y-~~ag~W~~al~lA~~l~~~~~-el~~l~~~lA~-~L~~~g~~~eAa~i~l~ylgD~e~ 859 (1102)
|+.|+-.|..+|....|++.. .+..+.+-|+-+|+.+.-+.+ -+.+|..+..- .=.+.+++=.|.-+|.. ++|+..
T Consensus 1291 fe~AaaFFLLagslkDAI~VC~kkl~DiQLALvI~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWi-Lkdy~r 1369 (2439)
T KOG1064|consen 1291 FEHAAAFFLLAGSLKDAINVCCKKLNDIQLALVICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWI-LKDYTR 1369 (2439)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhhhhhhhhheeeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHH-HHHHHH
Confidence 999999999999999999876 567789999999998753322 12222222111 11246777778888876 999999
Q ss_pred HHHHHHHh
Q 001314 860 GISLLIDA 867 (1102)
Q Consensus 860 AI~~y~~~ 867 (1102)
|+..++..
T Consensus 1370 Al~tLl~~ 1377 (2439)
T KOG1064|consen 1370 ALLTLLGQ 1377 (2439)
T ss_pred HHHHHhcC
Confidence 99999887
No 318
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=66.21 E-value=21 Score=36.11 Aligned_cols=19 Identities=5% Similarity=-0.080 Sum_probs=10.6
Q ss_pred hhHHHhhhcHHHHHHHHHH
Q 001314 715 YTIDLRLQRFENALKHIVS 733 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~ 733 (1102)
..+....|+|++|+..|.+
T Consensus 31 g~~~~~~g~~~~A~~~~~~ 49 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSW 49 (144)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4455556666666555554
No 319
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.81 E-value=17 Score=41.36 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=20.1
Q ss_pred hhhcHHHHHHHHHHcC---CC---cH-HHHHHHHHHHhcchHHHHhcc
Q 001314 720 RLQRFENALKHIVSMG---DS---YH-ADCLNLMKKYAQLFPLGLKLI 760 (1102)
Q Consensus 720 ~LkryekAl~hl~~~g---~~---~~-deAie~~~~~~~Ly~~AL~L~ 760 (1102)
--|+|.+|+..|-++= +. ++ ..|-- +.++ +.|+.|++=.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAA-y~~L-g~~~~AVkDc 138 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAA-YSKL-GEYEDAVKDC 138 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHH-HHHh-cchHHHHHHH
Confidence 3567777777665541 10 01 22222 3455 6777777644
No 320
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=65.78 E-value=14 Score=31.41 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+..|...|++++|+++|.. ++ . ..++ -.+....+|..+...|++.+|...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~------~l---~---~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQ------AL---K---QDPD-NPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHH------HH---C---CSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH------HH---H---HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888888887764 11 1 1222 235777889999999999999988754
No 321
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=65.28 E-value=67 Score=36.83 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHHhh
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
.....|.-+...|++++|..+|.++-. +-..-.+|...|+|+++.....+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344567777788888888888887632 11223556777888888776544
No 322
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=65.00 E-value=11 Score=30.99 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 38 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLr 38 (1102)
.++|.|...|||... .+..|..|--||.|
T Consensus 16 ~~~w~P~mdLiA~~t------~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 16 CMSWCPTMDLIALGT------EDGEVLVYRLNWQR 44 (47)
T ss_pred EEEECCCCCEEEEEE------CCCeEEEEECCCcC
Confidence 589999999999987 46789999999876
No 323
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=64.05 E-value=1.6e+02 Score=35.12 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=69.8
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
++=.|+|-++-++. ++....|...--=+----..-...++.+...+.-+||-||+.-.. ...|.+|..++-
T Consensus 309 ls~h~tgeYllsAs------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---d~~vkiwdlks~ 379 (506)
T KOG0289|consen 309 LSLHPTGEYLLSAS------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---DGVVKIWDLKSQ 379 (506)
T ss_pred eeeccCCcEEEEec------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC---CceEEEEEcCCc
Confidence 45568999887775 456788876432111000000123456889999999999998762 457999999886
Q ss_pred eEEEEEEEEeccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 85 HWYLKYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 85 HWYLKqei~~~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
. -.-.|+...+ + .+.|+. +.+.|++.+.+|.+...|..
T Consensus 380 ~----~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 380 T----NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred c----ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEeh
Confidence 5 2224665444 3 366654 56768888888877765554
No 324
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.98 E-value=99 Score=36.71 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHHHH
Q 001314 798 KAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAA 847 (1102)
Q Consensus 798 kAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~eAa 847 (1102)
...-||.+.+.|+.|+..+.+ |.+++...+.|++ .+..+...++|..|-
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR-rG~A~l~~~e~~~A~ 311 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR-RGQALLALGEYDLAR 311 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH-HHHHHHhhccHHHHH
Confidence 334555566666666555433 3444445555554 333333333333333
No 325
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=63.95 E-value=84 Score=37.26 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHcCC------hHHHH---HHHHHhcCCHHHHHHHHHH
Q 001314 812 VLTVAGLLKLGKDEVAKLAQELCEELQALGK------PGEAA---KIALDYCGDVTNGISLLID 866 (1102)
Q Consensus 812 al~lA~~l~~~~~el~~l~~~lA~~L~~~g~------~~eAa---~i~l~ylgD~e~AI~~y~~ 866 (1102)
++.++.....++.+++.+...++..+.+.|. |=+-| ++.+- +||+++|++.+.+
T Consensus 268 LL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 268 LLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEK 330 (374)
T ss_pred HHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3444444334556777778777777665552 22222 22222 5666666665543
No 326
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=63.87 E-value=2.1e+02 Score=33.34 Aligned_cols=135 Identities=17% Similarity=0.144 Sum_probs=83.1
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecC-------C--ccccceeeeeecCCCCeEEEEEeeCCCCe
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-------E--QIDSTVELLKWNCMSDLLAAVVRFEEYDS 75 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~-------~--~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~ 75 (1102)
|...|.|.+.-.+.-+ ...|.+|+=|+. +|+|.-- . +.....-++.=++||..|=+.-+ ..+.
T Consensus 196 i~FHpn~k~aY~v~EL-----~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~ds 267 (346)
T COG2706 196 IVFHPNGKYAYLVNEL-----NSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDS 267 (346)
T ss_pred EEEcCCCcEEEEEecc-----CCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCe
Confidence 6788999877777643 568999999988 8888643 1 12234777888888888887643 3455
Q ss_pred EEEEEcccceEEEEEEEEeccCCCceEEecCCC---CceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCC
Q 001314 76 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK---PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 152 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~~~~~~~~~~W~~e~---pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r 152 (1102)
|-.++....- ..+. .+.|.++. |-.+.+ ..+|++++.-. .-+|+=+|.=||..+=.||.+.
T Consensus 268 I~~f~V~~~~----g~L~-------~~~~~~teg~~PR~F~i-~~~g~~Liaa~----q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 268 IAVFSVDPDG----GKLE-------LVGITPTEGQFPRDFNI-NPSGRFLIAAN----QKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEEEEcCCC----CEEE-------EEEEeccCCcCCcccee-CCCCCEEEEEc----cCCCcEEEEEEcCCCceEEecc
Confidence 5555544432 0011 13443332 233444 55666553110 0123334455999999999887
Q ss_pred C-CCCCCccccc
Q 001314 153 L-SLMPPPMYLF 163 (1102)
Q Consensus 153 ~-a~VPPPM~~~ 163 (1102)
. ..+|-|||-.
T Consensus 332 ~~~~~p~Pvcv~ 343 (346)
T COG2706 332 RYAVVPEPVCVK 343 (346)
T ss_pred cccCCCCcEEEE
Confidence 7 8899999853
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.81 E-value=35 Score=41.88 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=49.1
Q ss_pred cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 50 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
..|.--+||++.+-|.+.++ ...|.||+...-- .+-.... --+..+.|||...+ +++++..|++.++|.+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~---t~~~ka~-~~P~~iaWHp~gai-~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCE---DGSIILYDTTRGV---TLLAKAE-FIPTLIAWHPDGAI-FVVGSEQGELQCFDMA 329 (545)
T ss_pred CcceEEecCcccceEEEEec---CCeEEEEEcCCCe---eeeeeec-ccceEEEEcCCCcE-EEEEcCCceEEEEEee
Confidence 35888899999999999984 3469999874431 2222111 01245899999998 8888889999875443
No 328
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.98 E-value=2.5e+02 Score=31.55 Aligned_cols=149 Identities=16% Similarity=0.173 Sum_probs=77.0
Q ss_pred eeeccCCC--eEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc--cccceeeeeecCC-CCeEEEEEeeCCCCeEEEE
Q 001314 5 LEWMPSGA--NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ--IDSTVELLKWNCM-SDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 5 LsWrPsGn--lIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~--~~~~v~~L~Wn~D-S~iLAv~~~~~~~~~vqLW 79 (1102)
++|.|+-. +||+++ +..+-+|+ +---++.|.-= ....|..+.||.- .+++-.- .=.+.|+||
T Consensus 66 V~Wse~~e~~~~~a~G-------DGSLrl~d---~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW 132 (311)
T KOG0277|consen 66 VAWSENHENQVIAASG-------DGSLRLFD---LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLW 132 (311)
T ss_pred eeecCCCcceEEEEec-------CceEEEec---cCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEee
Confidence 68999654 455543 56888888 44444444311 1245999999973 2222211 112368888
Q ss_pred EcccceEEEEEEEEe-ccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCC
Q 001314 80 FFSNNHWYLKYEIRY-LRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 156 (1102)
Q Consensus 80 t~~NYHWYLKqei~~-~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~V 156 (1102)
..+- ++.+.. ..... + ...|+|-.|..+.-.+.+|.+.+ |++. .+
T Consensus 133 ~~~r-----~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l----wdvr---------------------~~-- 180 (311)
T KOG0277|consen 133 DPNR-----PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL----WDVR---------------------SP-- 180 (311)
T ss_pred cCCC-----CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE----EEec---------------------CC--
Confidence 7653 444443 22222 2 36788877774444333343333 4332 22
Q ss_pred CCcccccccccC-CceeEEEEecCCCCceEEEEEeCCceEEEecCCC
Q 001314 157 PPPMYLFSLKFP-TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 157 PPPM~~~~l~~~-~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
--||. |+.+ .-|-+.-|++.+. |.++.--.|+.+..|.+...
T Consensus 181 gk~~~---i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 181 GKFMS---IEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred CceeE---EEeccceeEeecccccCC-cEEEecCCCceEEEEehhhc
Confidence 12222 1222 2455666766553 44554456677888876443
No 329
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=62.95 E-value=24 Score=41.47 Aligned_cols=109 Identities=21% Similarity=0.160 Sum_probs=73.0
Q ss_pred cccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh--------cC-----CCh----------------------
Q 001314 779 DVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL--------LK-----LGK---------------------- 823 (1102)
Q Consensus 779 ~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~--------l~-----~~~---------------------- 823 (1102)
.+++|+.|++.-.+.|+..+|...++-++.++.++..+++ ++ +..
T Consensus 107 Rq~dyk~aalqAK~~Gderka~mh~Rvakqfd~vIka~~rG~~VdlseLPppPdtmgpep~~vAp~aAAel~~~Ppaqp~ 186 (523)
T KOG3837|consen 107 RQRDYKLAALQAKQQGDERKAAMHFRVAKQFDAVIKALSRGEPVDLSELPPPPDTMGPEPPQVAPSAAAELPSQPPAQPT 186 (523)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCccccCCCCCCCCccccccCCCCCCCCCC
Confidence 3456777777777777777777777777777777776643 00 000
Q ss_pred ---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHH
Q 001314 824 ---------DEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK 888 (1102)
Q Consensus 824 ---------~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~et 888 (1102)
+-...-...++-.|+.+.+|..||.-. +..||.+.|-..+...+.|+.||+-|..-..-||-+.
T Consensus 187 ~Pt~pss~ppprasts~qlalllerq~qyq~AAiqA-Ks~gD~eqAK~ylri~Kgfd~~I~aa~aGrpVdls~l 259 (523)
T KOG3837|consen 187 APTTPSSPPPPRASTSGQLALLLERQRQYQVAAIQA-KSKGDQEQAKMYLRIVKGFDDAIRAAKAGRPVDLSEL 259 (523)
T ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhh-hhhccHHHHHHHHHHHHHHHHHHHHHhcCCCcchhcC
Confidence 000001134444555667799888654 5589999999999999999999998877655565443
No 330
>PRK04841 transcriptional regulator MalT; Provisional
Probab=62.24 E-value=1.3e+02 Score=39.53 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=31.3
Q ss_pred cchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHH
Q 001314 751 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY 803 (1102)
Q Consensus 751 ~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y 803 (1102)
.++..++.-. .++.+...+....|+|+...+++.+|..++..+++...+.++.
T Consensus 322 ~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll 377 (903)
T PRK04841 322 PLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDIL 377 (903)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444322 2455555666666777777777777777777777766655443
No 331
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=62.22 E-value=94 Score=40.21 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Q 001314 828 KLAQELCEELQALGKPGEAAKIALDY 853 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~y 853 (1102)
++..+-+.-+++.|++..|+.-|++-
T Consensus 242 ~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 242 ELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 46777777888888888888887653
No 332
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.01 E-value=36 Score=39.44 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhc
Q 001314 771 EAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 819 (1102)
Q Consensus 771 ~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l 819 (1102)
+-+.+.+...++..+|..+-.++.. ++-+++|.++|+|++|...|.+.
T Consensus 241 epFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 241 EPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHc
Confidence 3456666677777777777777666 77888888888888888877765
No 333
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.92 E-value=2.8e+02 Score=33.29 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=96.9
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEec---CCcceeeeecCC-cc--ccceeeeeecCCCCeEEEEEeeCCCCeEEE
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYER---NGLERSSFDINE-QI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKI 78 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFER---NGLrhgeF~L~~-~~--~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqL 78 (1102)
+-=+|+-|+|+++.-- .+-.-..|-.||+ |=--|-.|-||. |- +-..-+..=+.-|+.+||-+- + ..|.+
T Consensus 131 ~~V~psDnlIl~ar~e-ddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtm--d-p~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNE-DDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTM--D-PEIEI 206 (463)
T ss_pred ceeccCCcEEEEeecc-CCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEecc--C-ceeEE
Confidence 3458999999997522 1112356777776 446788888884 21 000002222345778888762 2 25677
Q ss_pred EEcc---------------------------------------cceEEEEEEEEeccCCCceEEecCCCCceEEEEe-eC
Q 001314 79 CFFS---------------------------------------NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT-LD 118 (1102)
Q Consensus 79 Wt~~---------------------------------------NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t-~~ 118 (1102)
|+.- -+.|+-...+..++-|..-..||-...---.+.+ .+
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 7421 0112223333333333333566544332112222 34
Q ss_pred CcEEEEEEEEeee-----ecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCc
Q 001314 119 GQITTYNFIWTTA-----VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGC 193 (1102)
Q Consensus 119 g~~~~~~~~w~~~-----~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~ 193 (1102)
+++....|.-... ++=+++|++.| +|. |-=+....++++.|--|++.+.+. +.+.+-+-+|+
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D--------~R~----~~~s~~~wk~~g~VEkv~w~~~se-~~f~~~tddG~ 353 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKD--------CRD----PSNSGKEWKFDGEVEKVAWDPHSE-NSFFVSTDDGT 353 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeee--------ccC----ccccCceEEeccceEEEEecCCCc-eeEEEecCCce
Confidence 5555555432111 23344555544 454 555667889999999999987544 55666577788
Q ss_pred eEEEecCC
Q 001314 194 LCVVDLPA 201 (1102)
Q Consensus 194 l~l~~~~~ 201 (1102)
++-|....
T Consensus 354 v~~~D~R~ 361 (463)
T KOG0270|consen 354 VYYFDIRN 361 (463)
T ss_pred EEeeecCC
Confidence 87777643
No 334
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=61.56 E-value=14 Score=41.52 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=49.2
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecC---C-c----ceeeeecCC----c-cccceeeeeecCCCCeEEEEEee
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN---G-L----ERSSFDINE----Q-IDSTVELLKWNCMSDLLAAVVRF 70 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN---G-L----rhgeF~L~~----~-~~~~v~~L~Wn~DS~iLAv~~~~ 70 (1102)
+++|.|+..+|-.+.. .+..|.||+=- | + .|..--.|. + --.+|.+|+|.+|+.-|+...
T Consensus 193 aV~Wsp~~e~vLatgs-----aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-- 265 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGS-----ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-- 265 (397)
T ss_pred EEEeccCceeEEEecC-----CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc--
Confidence 4789999998888762 35567777621 0 0 011111121 0 113699999999999999764
Q ss_pred CCCCeEEEEEcccce
Q 001314 71 EEYDSVKICFFSNNH 85 (1102)
Q Consensus 71 ~~~~~vqLWt~~NYH 85 (1102)
..+++.+|.+.|-.
T Consensus 266 -td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 266 -TDDRIRVWNMESGR 279 (397)
T ss_pred -CccceEEeecccCc
Confidence 46799999998877
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=60.28 E-value=14 Score=27.86 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE 33 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE 33 (1102)
.++|.|.|++||+.. .+..|.+|+
T Consensus 16 ~i~~~~~~~~~~s~~------~D~~i~vwd 39 (39)
T PF00400_consen 16 SIAWSPDGNFLASGS------SDGTIRVWD 39 (39)
T ss_dssp EEEEETTSSEEEEEE------TTSEEEEEE
T ss_pred EEEEecccccceeeC------CCCEEEEEC
Confidence 589999999999987 356888875
No 336
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=60.21 E-value=1.2e+02 Score=35.69 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q 001314 739 HADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 739 ~deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
|++|+++ |+.|+.+. .|+----+|+...|..+..-+++++|+.+-.+
T Consensus 138 fq~~Les-------fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 138 FQKALES-------FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHHHH-------HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 6677666 44555555 34443457888888888888888888765443
No 337
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=60.11 E-value=78 Score=32.46 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCChHHHH
Q 001314 829 LAQELCEELQALGKPGEAA 847 (1102)
Q Consensus 829 l~~~lA~~L~~~g~~~eAa 847 (1102)
++..+++.+...|++.+|.
T Consensus 115 i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHhhHHHHHcccHHHHH
Confidence 3333444444556655444
No 338
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.94 E-value=1.8e+02 Score=34.53 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=76.7
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEc-ccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFF-SNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIW 128 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~-~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w 128 (1102)
.|.-+.++.+|..||-.. .+. ..-+|.+ .--|.-||..+.- ...++ .++|+|..-.-|.++...- -+.|
T Consensus 226 EVWfl~FS~nGkyLAsaS--kD~-Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~-----~~lw 296 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS--KDS-TAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEV-----LSLW 296 (519)
T ss_pred cEEEEEEcCCCeeEeecc--CCc-eEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHh-----eeec
Confidence 499999999999999764 333 4445554 4456556665542 23444 5899999988677754321 2346
Q ss_pred eeeecC----------C---cEEEEEeCCeEEeccCCCCCCCCcccccccccC------------CceeEEEEecCCCCc
Q 001314 129 TTAVME----------N---STALVIDGSKILVTPLSLSLMPPPMYLFSLKFP------------TAVTEMAFYSKSSKN 183 (1102)
Q Consensus 129 ~~~~~d----------~---~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~------------~~i~~vaf~~~~~~~ 183 (1102)
+++..| . +.+=--||..+-.-.=+ =......++ -.|.|+|.++++.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk-- 367 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK-- 367 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-------CcEEEecCCcchhhcccccccceeEEEEEcCCCc--
Confidence 665210 1 11112455542211111 111111222 2477999888765
Q ss_pred eEEEEEeCCceEEEecCCC
Q 001314 184 CLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 184 ~~a~vl~~~~l~l~~~~~~ 202 (1102)
.+.++..+..+.+|+..+.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREAR 386 (519)
T ss_pred EEEEEecccceeeechhhh
Confidence 5666788899999987543
No 339
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.66 E-value=36 Score=43.79 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHH
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISL 863 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~ 863 (1102)
+++=..|..-|.|+||+++... .++.+..++...|+.+.+.++|..||++|.+-..-+++-+-=
T Consensus 362 R~vWk~yLd~g~y~kAL~~ar~----------------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLK 425 (911)
T KOG2034|consen 362 RDVWKTYLDKGEFDKALEIART----------------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALK 425 (911)
T ss_pred HHHHHHHHhcchHHHHHHhccC----------------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344456666777777665432 256777899999999999999999999999888888998888
Q ss_pred HHHhcCHHHHHHHHHh
Q 001314 864 LIDARDWEEALRVAFM 879 (1102)
Q Consensus 864 y~~~~~W~eA~rLa~~ 879 (1102)
+...++.+ +++.--.
T Consensus 426 Fl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 426 FLEINQER-ALRTFLD 440 (911)
T ss_pred HHhcCCHH-HHHHHHH
Confidence 88888877 7765443
No 340
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.59 E-value=24 Score=42.77 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHcCCHHHHHHHHhhc-CC-ChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--HHHHHHHHHHh
Q 001314 801 KAYRASGNWSGVLTVAGLL-KL-GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--VTNGISLLIDA 867 (1102)
Q Consensus 801 ~~y~~ag~W~~al~lA~~l-~~-~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD--~e~AI~~y~~~ 867 (1102)
.|..+.|.-++|+++.+.+ .+ +..+...+-..+.+.|-+.++|.|+..++.+|-++ ++.|--+|-.+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 4445556566665555443 11 12234457777899999999999999999887432 36777777654
No 341
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=58.84 E-value=62 Score=31.40 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=5.6
Q ss_pred hhcHHHHHHHHH
Q 001314 721 LQRFENALKHIV 732 (1102)
Q Consensus 721 LkryekAl~hl~ 732 (1102)
.|+|++|+..|.
T Consensus 30 ~~~~~~A~~~~~ 41 (135)
T TIGR02552 30 QGRYDEALKLFQ 41 (135)
T ss_pred cccHHHHHHHHH
Confidence 444555544443
No 342
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=58.66 E-value=3.2e+02 Score=31.86 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=45.6
Q ss_pred CceeeccCCCeEEEEeecc-----------------------------CC-CCCCeEEEEecCCcceeeeecC---Cccc
Q 001314 3 AVLEWMPSGANIAAVYDRK-----------------------------SE-NKCPSIVFYERNGLERSSFDIN---EQID 49 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~-----------------------------~~-~~~~~VvFFERNGLrhgeF~L~---~~~~ 49 (1102)
.++-|.|.|..||..+--. +. +-...+.+++-.+-+-.+..+| .+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 5688999999999875321 00 0122445566666665566666 2345
Q ss_pred cceeeeeecCCCC-eEEEEEeeCCCC--eEEEEEc
Q 001314 50 STVELLKWNCMSD-LLAAVVRFEEYD--SVKICFF 81 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~-iLAv~~~~~~~~--~vqLWt~ 81 (1102)
.-+..+.|.+|+. ++.+|+... ++ .+.+...
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~-q~~~~l~~~d~ 217 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRD-QNRLDLVLCDA 217 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETT-STEEEEEEEEE
T ss_pred cCcccceecCCCcEEEEEEcccC-CCEEEEEEEEC
Confidence 5688999999999 777776543 33 3444444
No 343
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=58.63 E-value=2e+02 Score=32.43 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=63.2
Q ss_pred CCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeC--CCCeEEEEEcc-------cceEEEEEEEEec
Q 001314 26 CPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE--EYDSVKICFFS-------NNHWYLKYEIRYL 95 (1102)
Q Consensus 26 ~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~--~~~~vqLWt~~-------NYHWYLKqei~~~ 95 (1102)
+..+.+|+ .+|-.--.+..|. .|..+.+|.++++..+.+... ....|-++.+- +-.=||| |..+
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~----~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k--I~t~ 146 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNS----PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK--IPTP 146 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCC----eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE--ecCC
Confidence 45666665 6777766666654 699999999999988887431 23467777765 2222333 2333
Q ss_pred cCCCceEEecCCCCceEEEEeeCCcEEEEEEE
Q 001314 96 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 96 ~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
.+..+..-|+|-... ++.+-.+|.+-+|+..
T Consensus 147 ~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 147 DSKITSALWGPLGET-IIAGHEDGSISIYDAR 177 (327)
T ss_pred ccceeeeeecccCCE-EEEecCCCcEEEEEcc
Confidence 322256789997766 6777788999888765
No 344
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.59 E-value=35 Score=33.97 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 826 VAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 826 l~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
...++...|..|...|++.+|..||.
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45789999999999999999999983
No 345
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.58 E-value=18 Score=31.29 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 001314 789 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 853 (1102)
Q Consensus 789 ~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y 853 (1102)
+|.+.+++++|++++.. ++. +++++ ..+....|..+...|+|.+|.+.+-.+
T Consensus 4 ~~~~~~~~~~A~~~~~~------~l~------~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLER------ALE------LDPDD-PELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHH------HHH------hCccc-chhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555566666555433 222 22222 346677888888889999988887554
No 346
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.53 E-value=40 Score=37.85 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHH
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKA 802 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~ 802 (1102)
-|+-|+.||.. |+ +.+|.+-..++ ++-|-+........--+|+-+..+++|++|+..|..+
T Consensus 144 ~Y~~A~~~~ks-gd--y~~A~~~F~~f-------i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~--------- 204 (262)
T COG1729 144 LYNAALDLYKS-GD--YAEAEQAFQAF-------IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV--------- 204 (262)
T ss_pred HHHHHHHHHHc-CC--HHHHHHHHHHH-------HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH---------
Confidence 56667766664 33 55665544444 3333222223344445788888999999998888764
Q ss_pred HHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 803 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 803 y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
++.++.++ ...+-+-++|..+...|+.++|-..|-+
T Consensus 205 -------------~k~~P~s~-KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 205 -------------VKDYPKSP-KAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred -------------HHhCCCCC-CChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 12333322 2235667778888888888888887755
No 347
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=58.28 E-value=64 Score=36.80 Aligned_cols=90 Identities=10% Similarity=0.183 Sum_probs=61.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--------ccccceeeeeecCCCCeEEEEEeeCCCCe
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--------QIDSTVELLKWNCMSDLLAAVVRFEEYDS 75 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--------~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~ 75 (1102)
.|.+.|.-..+++..| +..|.||+ |.=|. +.-..|..|++-+.|+.|+|-+ ++..
T Consensus 177 ~l~FHPre~ILiS~sr------D~tvKlFD--------fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~ 239 (430)
T KOG0640|consen 177 DLDFHPRETILISGSR------DNTVKLFD--------FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPT 239 (430)
T ss_pred ceeecchhheEEeccC------CCeEEEEe--------cccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCc
Confidence 4678887777777653 56899984 65552 1234699999999999999986 4778
Q ss_pred EEEEEcccceEEEEEEEEeccCCCc-eEEecCCCCc
Q 001314 76 VKICFFSNNHWYLKYEIRYLRRDGI-RFMWHPTKPL 110 (1102)
Q Consensus 76 vqLWt~~NYHWYLKqei~~~~~~~~-~~~W~~e~pl 110 (1102)
+.||+++.|.-|+--.-.-...+.+ ++..++...+
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccE
Confidence 9999999999877443111111223 3666665443
No 348
>PRK15331 chaperone protein SicA; Provisional
Probab=57.86 E-value=46 Score=34.84 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=14.2
Q ss_pred HHHHHHhcccChHHHHHHHHHc
Q 001314 772 AWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 772 ~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.+|-.+...|+|++|..+|..+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L 63 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFL 63 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3556666677777777766554
No 349
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=57.61 E-value=23 Score=30.06 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.7
Q ss_pred hhcHHHHHHHHH
Q 001314 721 LQRFENALKHIV 732 (1102)
Q Consensus 721 LkryekAl~hl~ 732 (1102)
.|+|++|+..+.
T Consensus 13 ~~~~~~A~~~~~ 24 (100)
T cd00189 13 LGDYDEALEYYE 24 (100)
T ss_pred HhcHHHHHHHHH
Confidence 444555544444
No 350
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=57.29 E-value=3.5e+02 Score=31.09 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=95.7
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceee-eecCC----ccccceeeeeecCCCCeEEEEEeeCCCC-eEEE
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS-FDINE----QIDSTVELLKWNCMSDLLAAVVRFEEYD-SVKI 78 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhge-F~L~~----~~~~~v~~L~Wn~DS~iLAv~~~~~~~~-~vqL 78 (1102)
++|+|.+|-.+..+-.+ +.+..+-|.- +|.++-. ..-|. ..+..|....++||++.||-- ..| .|.|
T Consensus 1 m~~~~~~n~~~~v~~a~--~~~~q~s~~~-~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSg----G~Dr~I~L 73 (338)
T KOG0265|consen 1 MAWHPRKNSLFSVYPAK--RGRSQISALA-LGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASG----GSDRAIVL 73 (338)
T ss_pred CCccCCCCceeeeEecc--cccccchhhh-hcccccccccchhhhcCCCcceEEEEEECCCCCeEeec----CCcceEEE
Confidence 57999888777665432 2456665554 4444332 33331 123469999999999999964 234 7999
Q ss_pred EEc---ccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEEEEEeee-------------------ecCC
Q 001314 79 CFF---SNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYNFIWTTA-------------------VMEN 135 (1102)
Q Consensus 79 Wt~---~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~-------------------~~d~ 135 (1102)
|.. -+..|-|| +-+..+ -+.|-+.+...|-++| +-.+.. |++. +++.
T Consensus 74 Wnv~gdceN~~~lk-----gHsgAVM~l~~~~d~s~i~S~gt-Dk~v~~----wD~~tG~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 74 WNVYGDCENFWVLK-----GHSGAVMELHGMRDGSHILSCGT-DKTVRG----WDAETGKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred Eeccccccceeeec-----cccceeEeeeeccCCCEEEEecC-CceEEE----EecccceeeehhccccceeeecCcccc
Confidence 982 23457776 222222 3778777666444433 223332 3332 2344
Q ss_pred cEEEE---EeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 136 STALV---IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 136 ~~vaV---IDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
|...| -|-.++++-..|.. -++ ..++-...+..|+|....++ .++. .=|+.+-+|.+
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k---~~~--~t~~~kyqltAv~f~d~s~q-v~sg-gIdn~ikvWd~ 203 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKK---EAI--KTFENKYQLTAVGFKDTSDQ-VISG-GIDNDIKVWDL 203 (338)
T ss_pred CCeEEEecCCCceEEEEeeccc---chh--hccccceeEEEEEecccccc-eeec-cccCceeeecc
Confidence 54443 45567888777742 111 11122345677888775543 3333 45667777776
No 351
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.07 E-value=1.2e+02 Score=34.03 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=66.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHH-hcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHH
Q 001314 669 EAVYEAALGLYDLNLAAIVALN-SQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMK 747 (1102)
Q Consensus 669 n~Ly~~ALg~YDl~Lal~VAq~-sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~ 747 (1102)
+++|=+||-.=.+++|..+-.+ ..+=|+-| =+..|+. +.+++ .|+|++|++.|-..=.+......-+-+
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--RV~~lka-----m~lEa---~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSK--RVGKLKA-----MLLEA---TGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--hHHHHHH-----HHHHH---hhchhhHHHHHHHHhccCcchhHHHHH
Confidence 4567778888788877444433 11123321 1111111 22333 678888888877652221222222222
Q ss_pred HHhcchHHHHhcc-CCc-HhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHH
Q 001314 748 KYAQLFPLGLKLI-TDP-AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 748 ~~~~Ly~~AL~L~-~d~-~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ 805 (1102)
+. |+-.. +.+ +-.+.+-...-.|+.+..-|.+++.+|..-|+|++|.=||..
T Consensus 126 Kl------Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 126 KL------AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HH------HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 22 22222 222 233444444445556677899999999999999999999875
No 352
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.44 E-value=53 Score=31.99 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHH
Q 001314 830 AQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLIT 887 (1102)
Q Consensus 830 ~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~e 887 (1102)
+..+|+.|.+.+.+.|++.+. + +..+..-++|++|+.+...|..|||+.
T Consensus 25 A~tIa~wL~~~~~~~E~v~lI-r--------~~sLmNrG~Yq~ALl~~~~~~~pdL~p 73 (116)
T PF09477_consen 25 ANTIADWLEQEGEMEEVVALI-R--------LSSLMNRGDYQEALLLPQCHCYPDLEP 73 (116)
T ss_dssp HHHHHHHHHHTTTTHHHHHHH-H--------HHHHHHTT-HHHHHHHHTTS--GGGHH
T ss_pred HHHHHHHHHhCCcHHHHHHHH-H--------HHHHHhhHHHHHHHHhcccCCCccHHH
Confidence 444455555555555544442 2 244677889999988888888899754
No 353
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=56.20 E-value=1.4e+02 Score=34.28 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=42.5
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc----eEEEEEEEEeccCCCceEEecCCCCceEEEEeeCC-cEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN----HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG-QITTYN 125 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY----HWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g-~~~~~~ 125 (1102)
.|..+++++||.-||-+. ....|.||.+..+ |=.+.|.++++ .++.+.|.|.-.- ++++..+| .+..|.
T Consensus 88 ~vt~~~FsSdGK~lat~~---~Dr~Ir~w~~~DF~~~eHr~~R~nve~d--hpT~V~FapDc~s-~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATIS---GDRSIRLWDVRDFENKEHRCIRQNVEYD--HPTRVVFAPDCKS-VVVSVKRGNKLCVYK 161 (420)
T ss_pred ceeeeEEcCCCceeEEEe---CCceEEEEecchhhhhhhhHhhccccCC--CceEEEECCCcce-EEEEEccCCEEEEEE
Confidence 599999999999999986 2337999998775 33444444443 1233555554332 33333343 344554
Q ss_pred EE
Q 001314 126 FI 127 (1102)
Q Consensus 126 ~~ 127 (1102)
..
T Consensus 162 ~~ 163 (420)
T KOG2096|consen 162 LV 163 (420)
T ss_pred ee
Confidence 44
No 354
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.18 E-value=2e+02 Score=32.59 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=52.0
Q ss_pred hchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHH----H---HHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccC
Q 001314 713 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNL----M---KKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKC 782 (1102)
Q Consensus 713 rr~~Id~~LkryekAl~hl~~~g~~~~deAie~----~---~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~ 782 (1102)
.-..|.+|=+.|++|++++...+. =||..+ . .+. .++.+.++-+ .++..+.++...|-.......+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~---lE~~Al~VqI~lk~~r~-d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGEN---LEAAALNVQILLKMHRF-DLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccch---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 336788899999999999998432 222222 1 122 3455555544 3444556788888888878888
Q ss_pred hHHHHHHHHHcCC
Q 001314 783 FEDAATTYFCCSS 795 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~ 795 (1102)
+.+|..+|+....
T Consensus 189 ~qdAfyifeE~s~ 201 (299)
T KOG3081|consen 189 IQDAFYIFEELSE 201 (299)
T ss_pred hhhHHHHHHHHhc
Confidence 8888888876544
No 355
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.88 E-value=38 Score=30.72 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-------CCcHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q 001314 725 ENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-------TDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 725 ekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-------~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
++|...+.++-. .|.+-+|-..+ .+|..|++++ .|+.....+-..+++|| +.|..++..
T Consensus 4 ~~A~~l~~~Ave--~d~~~~y~eA~-~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl------~RAE~i~~~ 69 (75)
T cd02677 4 EQAAELIRLALE--KEEEGDYEAAF-EFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYL------KRAEEILRL 69 (75)
T ss_pred HHHHHHHHHHHH--HHHHhhHHHHH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 566666665533 45555555555 6666666665 35666667888999998 567666654
No 356
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.41 E-value=5.9e+02 Score=33.09 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=47.7
Q ss_pred cceeeeeecCCCCeEEEEEeeCCCC--eEEE---EEcccceEEEEEEEEec----------cCCC---ceEEecCCCC--
Q 001314 50 STVELLKWNCMSDLLAAVVRFEEYD--SVKI---CFFSNNHWYLKYEIRYL----------RRDG---IRFMWHPTKP-- 109 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~iLAv~~~~~~~~--~vqL---Wt~~NYHWYLKqei~~~----------~~~~---~~~~W~~e~p-- 109 (1102)
..|..+.=|++|+.||++-. .. .+-| |.-+.|-==-|.+|.+- ...+ ..+.|||-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 46999999999999999852 22 3444 32221100013444432 1222 2489999863
Q ss_pred ceEEEEeeCCcEEEEEEE
Q 001314 110 LQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 110 l~L~i~t~~g~~~~~~~~ 127 (1102)
-+|.|+|+++.+..|+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CeEEEEecCCEEEEEecC
Confidence 569999999999999974
No 357
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=55.36 E-value=28 Score=37.33 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.8
Q ss_pred hhHHHhhhcHHHHHHHHHHc
Q 001314 715 YTIDLRLQRFENALKHIVSM 734 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~ 734 (1102)
..+...+|+|++|+..|.++
T Consensus 80 g~~~~~~g~~~~A~~a~~~A 99 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQA 99 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45666788999999888875
No 358
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=55.27 E-value=3.8e+02 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.5
Q ss_pred cceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce
Q 001314 50 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 85 (1102)
Q Consensus 50 ~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH 85 (1102)
.+|..|.++.||+.|.+. .+.|.||||.+.+-.
T Consensus 15 ~~i~sl~fs~~G~~lits---s~dDsl~LYd~~~g~ 47 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITS---SEDDSLRLYDSLSGK 47 (311)
T ss_pred CceeEEEecCCCCEEEEe---cCCCeEEEEEcCCCc
Confidence 369999999999999984 446799999999887
No 359
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=54.20 E-value=14 Score=28.13 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=12.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
+.+|.+.|++++|+++|.+
T Consensus 6 g~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4567777777777777665
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.14 E-value=41 Score=35.74 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=40.3
Q ss_pred hhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHH---HHHHHHHhcccChHHHHHHHHHc
Q 001314 721 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVL---EAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 721 LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~---~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
|-||--||-.|..... ..++.+|+.+--.-|++||.| +|.....++ ..|-.+-.-..+-.+|..+|.+|
T Consensus 28 L~~WG~ALLELAqfk~--g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 28 LTNWGGALLELAQFKQ--GPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5688888888888755 677888876554678888887 455444332 24444444444555565555443
No 361
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.72 E-value=35 Score=29.12 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=36.2
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 001314 783 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALG-KPGEAAKIALD 852 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g-~~~eAa~i~l~ 852 (1102)
|..-|..|...|++++|+.+|.+ ++.+ +++. ..+...+|..+...| ++.+|...+..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~------ai~~------~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEK------AIEL------DPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH------HHHH------STTH-HHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHc------CCCC-HHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34445556666777777777654 3333 1212 347777888888888 68888887654
No 362
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=53.11 E-value=42 Score=28.64 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCC----HHHHH----HHHHHcC-CHHHHHHHH
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSS----LEKAM----KAYRASG-NWSGVLTVA 816 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~----~ekAl----~~y~~ag-~W~~al~lA 816 (1102)
.++...|..+...++|++|..+|.++=. ...+. .+|...| +|++|+...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~ 61 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF 61 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 4567788888888888888888887722 22222 4455556 466665544
No 363
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.98 E-value=4.4e+02 Score=30.96 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=92.2
Q ss_pred ChhhHHHHHHHHHhhcchHHHHHHHHhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCC--hhhhchhHHHh---hhcHH
Q 001314 651 SYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMP--PLLMRYTIDLR---LQRFE 725 (1102)
Q Consensus 651 ~~~~ae~alk~l~fLvDvn~Ly~~ALg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le--~~~rr~~Id~~---Lkrye 725 (1102)
+...|.+.+.||+=... +++.|..|.-+ -.||. .+||-=+.-|+...+|. .--.-|+|... +|..+
T Consensus 170 D~~~ai~~i~~llEi~~----Wda~l~~~Rak--c~i~~---~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQP----WDASLRQARAK--CYIAE---GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred chhhHHHHHHHHHhcCc----chhHHHHHHHH--HHHhc---CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 34467777777764332 33333333222 22333 67776666666666662 22444555542 34444
Q ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHH-----
Q 001314 726 NALKHIVSM---GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE----- 797 (1102)
Q Consensus 726 kAl~hl~~~---g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~e----- 797 (1102)
.+|.-+.+| +++| ..|-..+++. +--.+-| .-++...+.++|.++...+++.-..+
T Consensus 241 ~sL~~iRECLKldpdH-K~Cf~~YKkl-kKv~K~l--------------es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ 304 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDH-KLCFPFYKKL-KKVVKSL--------------ESAEQAIEEKHWTECLEAGEKVLKNEPEETM 304 (504)
T ss_pred HHHHHHHHHHccCcch-hhHHHHHHHH-HHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHHhcCCcccc
Confidence 444444333 2222 3333333333 1111111 12455666777777777776653322
Q ss_pred -------HHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 001314 798 -------KAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARD 869 (1102)
Q Consensus 798 -------kAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~ 869 (1102)
---.||...++.-+|+..+.+ +++++++... +.+-|+.+.-. .+++.||.-|-++..
T Consensus 305 ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~-l~dRAeA~l~d--------------E~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 305 IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQV-LCDRAEAYLGD--------------EMYDDAIHDYEKALE 369 (504)
T ss_pred eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHH-HHHHHHHHhhh--------------HHHHHHHHHHHHHHh
Confidence 223788888888888877755 4555555443 33333333222 345666666666666
Q ss_pred HHH
Q 001314 870 WEE 872 (1102)
Q Consensus 870 W~e 872 (1102)
|++
T Consensus 370 ~n~ 372 (504)
T KOG0624|consen 370 LNE 372 (504)
T ss_pred cCc
Confidence 644
No 364
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.52 E-value=3.3e+02 Score=32.40 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=79.2
Q ss_pred eeecc-CCCeEEEEeeccCCCCCCeEEEEe--cCCcceeee----ecCCccccceeeeeecCCC-CeEEEEEeeCCCCeE
Q 001314 5 LEWMP-SGANIAAVYDRKSENKCPSIVFYE--RNGLERSSF----DINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSV 76 (1102)
Q Consensus 5 LsWrP-sGnlIA~~qr~~~~~~~~~VvFFE--RNGLrhgeF----~L~~~~~~~v~~L~Wn~DS-~iLAv~~~~~~~~~v 76 (1102)
++|.| .-+.||+-. ++..|..|. .|||-|.-- .|-+ ...+|--++|-+.- +||+-. .....|
T Consensus 87 i~w~PfnD~vIASgS------eD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsa---g~Dn~v 156 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGS------EDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSA---GSDNTV 156 (472)
T ss_pred cccCccCCceeecCC------CCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhc---cCCceE
Confidence 68999 889999954 466777775 688876532 1111 12368889998854 334322 223489
Q ss_pred EEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEE-----Eeeeec----CCcEEEEEeCCeE
Q 001314 77 KICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI-----WTTAVM----ENSTALVIDGSKI 146 (1102)
Q Consensus 77 qLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~-----w~~~~~----d~~~vaVIDG~~l 146 (1102)
.+|.++.-. --|.....+- .++.|.....+ |...+.+-.+.+++-. ++-..+ ..-.+.+-||+ +
T Consensus 157 ~iWnv~tge----ali~l~hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 157 SIWNVGTGE----ALITLDHPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred EEEeccCCc----eeeecCCCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999988754 2223333333 34677665554 4443334455554432 111111 22377788999 9
Q ss_pred EeccCCCC
Q 001314 147 LVTPLSLS 154 (1102)
Q Consensus 147 ~lTp~r~a 154 (1102)
..|-|.+.
T Consensus 231 ~tTGfsr~ 238 (472)
T KOG0303|consen 231 FTTGFSRM 238 (472)
T ss_pred eeeccccc
Confidence 99999874
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.37 E-value=77 Score=37.62 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHHHhcccChHHHHHHHHHcCCH-----------HHHHHHHHHcCCHHHHHHHHhh
Q 001314 764 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-----------EKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 764 ~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~-----------ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
+-.+..++.+|+|+.+-|++..|...|.++.+| -..++.-+-.|+|-.++....+
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 445788999999999999999999999996543 3455666678899888765443
No 366
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=52.12 E-value=38 Score=39.13 Aligned_cols=74 Identities=18% Similarity=0.357 Sum_probs=50.8
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecC------Cc---------cccceeeeeecCCCCeEEEEEe
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN------EQ---------IDSTVELLKWNCMSDLLAAVVR 69 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~------~~---------~~~~v~~L~Wn~DS~iLAv~~~ 69 (1102)
+..--+|+++|+-. ....||.|||.-+..|||..- .| -+++|..+.|-.++..--..+.
T Consensus 31 vef~~~Ge~LatGd------kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 31 VEFDHYGERLATGD------KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred EEeecccceEeecC------CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 44455789998843 356999999999996555443 12 1347999999999886555553
Q ss_pred eCCCCeEEEEEcccce
Q 001314 70 FEEYDSVKICFFSNNH 85 (1102)
Q Consensus 70 ~~~~~~vqLWt~~NYH 85 (1102)
.....|.||-..+-.
T Consensus 105 -tNdktiKlWKi~er~ 119 (433)
T KOG1354|consen 105 -TNDKTIKLWKIRERG 119 (433)
T ss_pred -cCCcceeeeeeeccc
Confidence 233479999766543
No 367
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=51.52 E-value=6.6 Score=48.21 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=80.5
Q ss_pred ccceeeeeecC-CCCeEEEEEee-CCCCeEEEEEcccceEEEEEEEEecc--CCC-ceEEecCCCCceEEEEeeCCcEEE
Q 001314 49 DSTVELLKWNC-MSDLLAAVVRF-EEYDSVKICFFSNNHWYLKYEIRYLR--RDG-IRFMWHPTKPLQLICWTLDGQITT 123 (1102)
Q Consensus 49 ~~~v~~L~Wn~-DS~iLAv~~~~-~~~~~vqLWt~~NYHWYLKqei~~~~--~~~-~~~~W~~e~pl~L~i~t~~g~~~~ 123 (1102)
...|+.|+||+ |+++||+-+.. .....+.+|....--=-=|....|.. .++ .+++|....++ +..|.++..+.+
T Consensus 102 ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~kl-vlaGm~sr~~~i 180 (783)
T KOG1008|consen 102 ARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKL-VLAGMTSRSVHI 180 (783)
T ss_pred cccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcch-hhcccccchhhh
Confidence 44699999998 79999998732 12347999987664100022222222 122 46899966666 444555667888
Q ss_pred EEEEEeeee------------------------cCCcEEEEEe----CCeEEeccCCCCCCCCcccccccccCCceeEEE
Q 001314 124 YNFIWTTAV------------------------MENSTALVID----GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMA 175 (1102)
Q Consensus 124 ~~~~w~~~~------------------------~d~~~vaVID----G~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~va 175 (1102)
.++.|+.+. ..+|.+|.=| -.+.+++-++. |-||. ..+-.++
T Consensus 181 fdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~---~N~~~-------~~l~~~a 250 (783)
T KOG1008|consen 181 FDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRN---ENKKP-------KQLFALA 250 (783)
T ss_pred hhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhC---CCCcc-------cceeeEE
Confidence 888876540 1234444434 12233333333 22222 2355667
Q ss_pred EecCCCCceEEEEEeCCceEEEecCC
Q 001314 176 FYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 176 f~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
+.|.. +...+++++++..++.++.
T Consensus 251 ycPtr--tglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 251 YCPTR--TGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred eccCC--cchhhhhccCcceEEEecc
Confidence 76643 4567778888877776654
No 368
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=51.44 E-value=5.7e+02 Score=31.73 Aligned_cols=141 Identities=16% Similarity=0.256 Sum_probs=81.6
Q ss_pred CCeEEEEecCCcceeeeecCCc--cccceeeeeecCC--CCeEEEEEeeCC--CCeEEEEEcc--cceEEEEEEEEeccC
Q 001314 26 CPSIVFYERNGLERSSFDINEQ--IDSTVELLKWNCM--SDLLAAVVRFEE--YDSVKICFFS--NNHWYLKYEIRYLRR 97 (1102)
Q Consensus 26 ~~~VvFFERNGLrhgeF~L~~~--~~~~v~~L~Wn~D--S~iLAv~~~~~~--~~~vqLWt~~--NYHWYLKqei~~~~~ 97 (1102)
.++|-|||-++ |..+.. ....+..++-++- ---+||-+...+ ...|+||-.+ +.|=-+- .-.|-..
T Consensus 145 ~nev~f~~~~~-----f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a-~ksFFka 218 (566)
T KOG2315|consen 145 SNEVQFYDLGS-----FKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA-NKSFFKA 218 (566)
T ss_pred cceEEEEecCC-----ccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh-hcccccc
Confidence 57999999988 555531 1235778888875 456777764332 3489999887 6551100 0012234
Q ss_pred CCceEEecCCCCceEEEEeeCCcEEEEEEEEeeee---c---CCcEE-EEEeCCeEEeccCCCCCCCCcccccccccCCc
Q 001314 98 DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV---M---ENSTA-LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 170 (1102)
Q Consensus 98 ~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~---~---d~~~v-aVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~ 170 (1102)
|.+.+.|.+-..--|.+.++ +++- | +.... .-|+|..+.+-=. =..|
T Consensus 219 dkvqm~WN~~gt~LLvLast-----------dVDktn~SYYGEq~Lyll~t~g~s~~V~L~---------------k~GP 272 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLAST-----------DVDKTNASYYGEQTLYLLATQGESVSVPLL---------------KEGP 272 (566)
T ss_pred ceeEEEeccCCceEEEEEEE-----------eecCCCccccccceEEEEEecCceEEEecC---------------CCCC
Confidence 55789998766543554332 1221 1 22222 2366776655322 2468
Q ss_pred eeEEEEecCCCCceEEEEE--eCCceEEEecC
Q 001314 171 VTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 200 (1102)
Q Consensus 171 i~~vaf~~~~~~~~~a~vl--~~~~l~l~~~~ 200 (1102)
|.||.|++++.+ |+||. .--++.||++.
T Consensus 273 Vhdv~W~~s~~E--F~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 273 VHDVTWSPSGRE--FAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred ceEEEECCCCCE--EEEEEecccceEEEEcCC
Confidence 999999998765 56653 33556677653
No 369
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=51.38 E-value=1.1e+02 Score=36.54 Aligned_cols=66 Identities=11% Similarity=0.027 Sum_probs=33.7
Q ss_pred hhchhHHHhhhcHHHHHHHHHHc---CCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSM---GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~---g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
+-|...--|....++|++|+.++ +++| .++..+... ++ ....++.-|+-+..+|+|..|.+
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh-~~sk~~~~~--------------~k-~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDH-QKSKSASMM--------------PK-KLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhh-hhHHhHhhh--------------HH-HHHHHHhhhhhHhhccchhHHHH
Confidence 44445555666777777776653 3332 222211111 11 12345566777766666666666
Q ss_pred HHHHc
Q 001314 789 TYFCC 793 (1102)
Q Consensus 789 ~Y~~a 793 (1102)
.|..|
T Consensus 271 ~Ytea 275 (486)
T KOG0550|consen 271 CYTEA 275 (486)
T ss_pred HHHHh
Confidence 65554
No 370
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.38 E-value=1e+02 Score=35.97 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=8.5
Q ss_pred cchHHHHhcc
Q 001314 751 QLFPLGLKLI 760 (1102)
Q Consensus 751 ~Ly~~AL~L~ 760 (1102)
+.|.-|+.+.
T Consensus 36 rDytGAislL 45 (557)
T KOG3785|consen 36 RDYTGAISLL 45 (557)
T ss_pred ccchhHHHHH
Confidence 7899998887
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.27 E-value=1.1e+02 Score=36.39 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 143 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 143 G~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
-+++.+.|+|...|--|.+.--.+..+..+-|.|||+++ .+++=-+||++++|+...
T Consensus 362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~--YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS--YVAAGSADGSVYIWSVFT 418 (459)
T ss_pred CCceeeeecccccEEEEeeccccccccccceeEECCCCc--eeeeccCCCcEEEEEccC
Confidence 456667788888888888888899999999999999865 677778999999999754
No 372
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=51.02 E-value=4.7e+02 Score=30.73 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=53.0
Q ss_pred hHHHHHHhcCCh-----hhhchhHHHhhhcHHHHHHHHHHc---CCC--c---HHHHHHHHHHHhcchHHHHhcc--CCc
Q 001314 699 LPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDS--Y---HADCLNLMKKYAQLFPLGLKLI--TDP 763 (1102)
Q Consensus 699 LpfL~~L~~le~-----~~rr~~Id~~LkryekAl~hl~~~---g~~--~---~deAie~~~~~~~Ly~~AL~L~--~d~ 763 (1102)
||-|.++-.+-+ ..||..|-...|.++.|..-|-.. .+. - ..+=+..+..|-.|-..++..+ +|-
T Consensus 92 l~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 92 LQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 455555555522 368889999999999999876542 110 0 1233344455523333334334 222
Q ss_pred HhHHHHHHHHHHHHhcccChHH-----HHHHHHHcCCHHHHHHHHH
Q 001314 764 AKMEQVLEAWADHLSDVKCFED-----AATTYFCCSSLEKAMKAYR 804 (1102)
Q Consensus 764 ~~~~~i~~~yAd~L~~~~~~ee-----Aa~~Y~~ag~~ekAl~~y~ 804 (1102)
... ..+-.||-+.+-|+. -+..|+.-|++.+||.-..
T Consensus 172 ~~a----i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 172 QNA----IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLK 213 (504)
T ss_pred hhH----HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 221 123455555555532 3455666666666664433
No 373
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.89 E-value=24 Score=43.26 Aligned_cols=83 Identities=14% Similarity=0.247 Sum_probs=41.9
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCC----cHHHHHHHHHHHhcchHHHHhcc---CCcH-hHHHHHHHHHHHHhcccCh
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDS----YHADCLNLMKKYAQLFPLGLKLI---TDPA-KMEQVLEAWADHLSDVKCF 783 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~----~~deAie~~~~~~~Ly~~AL~L~---~d~~-~~~~i~~~yAd~L~~~~~~ 783 (1102)
|.-|..- ||++|.-|+-.|.++.+- ....++ .+|.+|+... ++.. .|.- ...|-|++..++|
T Consensus 265 w~lyd~g-hl~~YPmALg~LadLeEi~pt~~r~~~~-------~l~~~AI~sa~~~Y~n~HvYPY--ty~gg~~yR~~~~ 334 (618)
T PF05053_consen 265 WLLYDMG-HLARYPMALGNLADLEEIDPTPGRPTPL-------ELFNEAISSARTYYNNHHVYPY--TYLGGYYYRHKRY 334 (618)
T ss_dssp HHHHHTT-TTTT-HHHHHHHHHHHHHS--TTS--HH-------HHHHHHHHHHHHHCTT--SHHH--HHHHHHHHHTT-H
T ss_pred HHHHhcC-chhhCchhhhhhHhHHhhccCCCCCCHH-------HHHHHHHHHHHHHhcCCccccc--eehhhHHHHHHHH
Confidence 4444432 899999999999987320 012222 3555555443 3333 2332 2235555555554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCCh
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGK 823 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~ 823 (1102)
+ +|+.+ |-+|-.+++.++++.
T Consensus 335 ~-------------eA~~~------Wa~aa~Vi~~YnY~r 355 (618)
T PF05053_consen 335 R-------------EALRS------WAEAADVIRKYNYSR 355 (618)
T ss_dssp H-------------HHHHH------HHHHHHHHTTSB--G
T ss_pred H-------------HHHHH------HHHHHHHHHHcccCc
Confidence 4 45544 666777777777754
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.64 E-value=3.7e+02 Score=31.47 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCcHhHHHHHHHHHHHHhcccChHHHHHHHHH
Q 001314 761 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 761 ~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
++|.+...-++.-|..+...++|+.|...|..
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~ 106 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTE 106 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Confidence 45666555566667777777777777777754
No 375
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.27 E-value=1.8e+02 Score=37.85 Aligned_cols=122 Identities=25% Similarity=0.289 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHH
Q 001314 723 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKA 802 (1102)
Q Consensus 723 ryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~ 802 (1102)
||+-|| ++|. .+.|+++.++. +| ++.++..|+-...++++.-|+..|.+-.+++|--=.
T Consensus 649 RF~LaL----e~gn--le~ale~akkl-----------dd----~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfL 707 (1202)
T KOG0292|consen 649 RFELAL----ECGN--LEVALEAAKKL-----------DD----KDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFL 707 (1202)
T ss_pred heeeeh----hcCC--HHHHHHHHHhc-----------Cc----HHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEE
Confidence 555554 4565 77777777776 23 356777888888888999999999998888887777
Q ss_pred HHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCC
Q 001314 803 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRR 882 (1102)
Q Consensus 803 y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~ 882 (1102)
|.-.|+-+.+-.++... +.-.+.. ++|.-| -|+||+++=++.+..+++..-|...|..|.-
T Consensus 708 YliTgn~eKL~Km~~ia--------e~r~D~~------~~~qna-----lYl~dv~ervkIl~n~g~~~laylta~~~G~ 768 (1202)
T KOG0292|consen 708 YLITGNLEKLSKMMKIA--------EIRNDAT------GQFQNA-----LYLGDVKERVKILENGGQLPLAYLTAAAHGL 768 (1202)
T ss_pred EEEeCCHHHHHHHHHHH--------HhhhhhH------HHHHHH-----HHhccHHHHHHHHHhcCcccHHHHHHhhcCc
Confidence 77777766655544321 1111111 222221 2689999999999999999999988888875
Q ss_pred hh
Q 001314 883 ED 884 (1102)
Q Consensus 883 ~d 884 (1102)
.+
T Consensus 769 ~~ 770 (1202)
T KOG0292|consen 769 ED 770 (1202)
T ss_pred HH
Confidence 44
No 376
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=49.38 E-value=2.8e+02 Score=27.53 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhh----cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 798 KAMKAYRASGNWSGVLTVAGL----LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 798 kAl~~y~~ag~W~~al~lA~~----l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+.++.+...|+|++++.++.+ .+.+ ..++..+-..+...|++.+|.++|.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~----E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYD----EEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 344444455555555544433 2232 24677777788888888888888755
No 377
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.27 E-value=7e+02 Score=32.17 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCCc-eEE
Q 001314 25 KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI-RFM 103 (1102)
Q Consensus 25 ~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~~-~~~ 103 (1102)
.+.+|+.|+==|. .|-|.|++..+. |.++.+..+.++|--. .+...|.+|+...-|= -+.....+..+ .+.
T Consensus 127 kDt~IIvwDlV~E-~Gl~rL~GHkd~-iT~~~F~~~~~~lvS~---sKDs~iK~WdL~tqhC---f~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 127 KDTDIIVWDLVGE-EGLFRLRGHKDS-ITQALFLNGDSFLVSV---SKDSMIKFWDLETQHC---FETHVDHRGEIWALV 198 (888)
T ss_pred CCccEEEEEeccc-eeeEEeecchHH-HhHHhccCCCeEEEEe---ccCceEEEEeccccee---eeEEecccceEEEEE
Confidence 4678999988775 588999987663 5555555544433322 3456899999999883 22222222222 244
Q ss_pred ecCCCCceEEEEeeCCcEEEEEEEEeee
Q 001314 104 WHPTKPLQLICWTLDGQITTYNFIWTTA 131 (1102)
Q Consensus 104 W~~e~pl~L~i~t~~g~~~~~~~~w~~~ 131 (1102)
.++ -++..+++++++.+|+..++.+
T Consensus 199 ~~~---~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 199 LDE---KLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred Eec---ceEEEEecCCceEEEEeecccc
Confidence 455 3356666778899988865544
No 378
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.13 E-value=4e+02 Score=33.41 Aligned_cols=143 Identities=19% Similarity=0.206 Sum_probs=72.3
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCC-cHHH-HHHHHHHHhcchHHHHhccCC-cHhHHHHHHHHHHHHhcccC-hHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDS-YHAD-CLNLMKKYAQLFPLGLKLITD-PAKMEQVLEAWADHLSDVKC-FEDAA 787 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~-~~de-Aie~~~~~~~Ly~~AL~L~~d-~~~~~~i~~~yAd~L~~~~~-~eeAa 787 (1102)
+-....+..-|+..++++.+.+..++ .+-. ..++.... ++.+.......+ ......+...||..|.+... |+-|.
T Consensus 301 ~e~~~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~-g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai 379 (566)
T PF07575_consen 301 LEQILLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHK-GLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAI 379 (566)
T ss_dssp THHHHHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHT-TSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhc-CccccccccccccccHHHHHHHHHHHHHhcCcchHHHHH
Confidence 34455666677778888777776321 1111 12222222 322200000011 23344567899999998765 88888
Q ss_pred HHHHHcCCHH-HHHHHHHH------cCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH
Q 001314 788 TTYFCCSSLE-KAMKAYRA------SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV 857 (1102)
Q Consensus 788 ~~Y~~ag~~e-kAl~~y~~------ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~ 857 (1102)
.+...|++.. .+++.+.. ..+-+.++.+|.++++.. .-++++..+|.++.+.|+|.+|-.-+.+ +||.
T Consensus 380 ~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~-~a~~I~~~~~~~~~~~~~~g~AL~~~~r-a~d~ 454 (566)
T PF07575_consen 380 GYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLED-VAREICKILGQRLLKEGRYGEALSWFIR-AGDY 454 (566)
T ss_dssp HHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHH-CCCH
Confidence 8888887543 34433321 113566777777777643 4456777777777766766666665544 5554
No 379
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.91 E-value=89 Score=36.70 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=34.0
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+.+|...|+++.|+..+.+ |+.+. +. ....+..+|..+...|+|.+|...|.+
T Consensus 43 a~~~~~~g~~~eAl~~~~~------Al~l~------P~-~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 43 AQANIKLGNFTEAVADANK------AIELD------PS-LAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHcCCHHHHHHHHHH------HHHhC------cC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666777777766543 33332 11 124566778888889999999988754
No 380
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=48.29 E-value=1.4e+02 Score=30.69 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 001314 785 DAATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 785 eAa~~Y~~ag~~ekAl~~y~~ 805 (1102)
..+.+|...|++++|+.+|.+
T Consensus 77 ~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 77 NMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 335566666777777776654
No 381
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.24 E-value=59 Score=39.41 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHcCC--------HHHHHHHHHHcCCHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHH
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVA-GLLKLGKDEVAKLAQELCEELQA 839 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~ag~--------~ekAl~~y~~ag~W~~al~lA-~~l~~~~~el~~l~~~lA~~L~~ 839 (1102)
-++.-|.++...++|++|..+|..|=. |..-..||...|+|+++..-+ ..+.+.++-.+.+++ -|..-++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~R-RA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLR-RASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHH-HHHHHHh
Confidence 344568888899999999999988722 455568999999999997654 335555544443333 3333344
Q ss_pred cCChHHH
Q 001314 840 LGKPGEA 846 (1102)
Q Consensus 840 ~g~~~eA 846 (1102)
.|++.||
T Consensus 196 lg~~~ea 202 (606)
T KOG0547|consen 196 LGKFDEA 202 (606)
T ss_pred hccHHHH
Confidence 4444443
No 382
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=48.01 E-value=6.2e+02 Score=33.27 Aligned_cols=192 Identities=19% Similarity=0.174 Sum_probs=95.7
Q ss_pred hhHHHhhhcHHHHHHHHHHcCCC--cHHHHHH----HHHHHhcchHHHHhcc-----CCcH--hHHHHHHHHHHHHhccc
Q 001314 715 YTIDLRLQRFENALKHIVSMGDS--YHADCLN----LMKKYAQLFPLGLKLI-----TDPA--KMEQVLEAWADHLSDVK 781 (1102)
Q Consensus 715 ~~Id~~LkryekAl~hl~~~g~~--~~deAie----~~~~~~~Ly~~AL~L~-----~d~~--~~~~i~~~yAd~L~~~~ 781 (1102)
+.+-..+||+++|+..|-..... +-+.-++ .+++. +.+++|+.+| .+|. ..-.++.+|.+--.-++
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence 55666799999999666543110 0122222 24677 7788888877 2443 12344555555444445
Q ss_pred ChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChH-----HHHHHHHHHH--------------------HH
Q 001314 782 CFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD-----EVAKLAQELC--------------------EE 836 (1102)
Q Consensus 782 ~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~-----el~~l~~~lA--------------------~~ 836 (1102)
+-..|..+|.-.++-. |. -|.-.=-++.... +++ -...++++++ ..
T Consensus 129 qQkaa~~LyK~~pk~~-----yy---fWsV~Slilqs~~-~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 129 QQKAALQLYKNFPKRA-----YY---FWSVISLILQSIF-SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHhCCccc-----ch---HHHHHHHHHHhcc-CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 5555555555544310 00 0322111111100 000 0011222222 23
Q ss_pred HHHcCChHHHHHHHH-Hhc------CC--HHHHHHHHHHhcCHHHHHHHHHhc---CChh---hHHHHHHhH-------H
Q 001314 837 LQALGKPGEAAKIAL-DYC------GD--VTNGISLLIDARDWEEALRVAFMH---RRED---LITKVKHAS-------L 894 (1102)
Q Consensus 837 L~~~g~~~eAa~i~l-~yl------gD--~e~AI~~y~~~~~W~eA~rLa~~h---~~~d---L~etv~~a~-------l 894 (1102)
|..+|+|.||..++. ..+ .+ ...-.+++.+.++|.+-++++.+- .+.| .++++...+ .
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a 279 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPA 279 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccc
Confidence 445678888888772 211 11 235678889999999998877652 2232 112222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001314 895 ECASSLIGEYKEGLEKVGKYLT 916 (1102)
Q Consensus 895 ~~a~~~~~el~e~~~~~~k~~~ 916 (1102)
+.+.....++++|.+...+...
T Consensus 280 ~~~~s~~~~l~~~~ek~~~~i~ 301 (932)
T KOG2053|consen 280 EAAHSLSKSLDECIEKAQKNIG 301 (932)
T ss_pred hhhhhhhhhHHHHHHHHHHhhc
Confidence 3344445567777777766543
No 383
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=47.59 E-value=8.8e+02 Score=33.06 Aligned_cols=33 Identities=9% Similarity=-0.098 Sum_probs=25.2
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 85 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH 85 (1102)
...+++|++|++.|-|.- ...++|+.|+..+..
T Consensus 741 ~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 741 QPSGISLSPDLKELYIAD--SESSSIRALDLKTGG 773 (1057)
T ss_pred CccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCc
Confidence 367899999999776653 456799999976654
No 384
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=47.39 E-value=17 Score=31.08 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
++...+|..+.+.|++.+|..++..
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555677777778888888777644
No 385
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=47.05 E-value=20 Score=27.22 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=19.1
Q ss_pred HHHHHHHHhcccChHHHHHHHHHc
Q 001314 770 LEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 770 ~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+...|+.+...|+|++|..+|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788899999999999998873
No 386
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=46.24 E-value=1.7e+02 Score=34.55 Aligned_cols=113 Identities=10% Similarity=0.139 Sum_probs=63.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+++|.-.|++++++++- ..|..++ |-|..-.|= +...+.+-..--|-.||+++.--......-.|-||.-.
T Consensus 178 S~sfn~dGs~l~TtckD------KkvRv~dpr~~~~v~e~--~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKD------KKVRVIDPRRGTVVSEG--VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred EEEeccCCceeeeeccc------ceeEEEcCCCCcEeeec--ccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 67999999999999853 3454444 333332221 22334445556688899966665543333468899988
Q ss_pred cceEEE-EEEEEeccCCCceE-EecCCCCceEEEEeeCCcEEEEEE
Q 001314 83 NNHWYL-KYEIRYLRRDGIRF-MWHPTKPLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 83 NYHWYL-Kqei~~~~~~~~~~-~W~~e~pl~L~i~t~~g~~~~~~~ 126 (1102)
|..==+ =||+. .++++-| .||+...+.-.+|-.+|++.-|++
T Consensus 250 nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 250 NLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 865110 02221 2334444 788877773333434455555444
No 387
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=45.94 E-value=4.6e+02 Score=29.07 Aligned_cols=28 Identities=11% Similarity=-0.210 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.....-..|.-+...++|++|...|++.
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333444555555666666666666554
No 388
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=45.88 E-value=1.4e+02 Score=33.43 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.4
Q ss_pred cchHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 751 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 751 ~Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
..|.+|++|. .+|. +....|-++.=+++++.|..+..++
T Consensus 155 ~ay~qAl~L~~~~p~----~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 155 RAYRQALELAPNEPS----IANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHHHHhccCCch----hhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888888 6663 4556888888888888888877765
No 389
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=45.68 E-value=1.5e+02 Score=37.63 Aligned_cols=201 Identities=14% Similarity=0.017 Sum_probs=114.4
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
++..++-.-+|--.+|+..+-+.+. .+..+..+... ++-.+|-.+. -..+.-..++...||.+.+...|+.|-+
T Consensus 402 ~~laell~slGitksAl~I~Erlem--w~~vi~CY~~l-g~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawE 478 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM--WDPVILCYLLL-GQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWE 478 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH--HHHHHHHHHHh-cccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHH
Confidence 3446777778888888888888865 78888888887 7777777665 1222234567788999999999999887
Q ss_pred HHHHcCCHHHHHHH----HHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc-CCHHHH--
Q 001314 789 TYFCCSSLEKAMKA----YRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC-GDVTNG-- 860 (1102)
Q Consensus 789 ~Y~~ag~~ekAl~~----y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl-gD~e~A-- 860 (1102)
++..-. .+|-.. ....+++.++...-.. +.+.+-.+ ...-.++..--+.++++.|++.|..++ ++|+.+
T Consensus 479 lsn~~s--arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~-~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 479 LSNYIS--ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL-GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred Hhhhhh--HHHHHhhccccccchhHHHHHHHHHHHhhcCccch-hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 765432 122222 1223444444332211 11111011 122222222234667888888775543 344332
Q ss_pred ----HHHHHHhcCHHHHHHHHHh---cCChhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001314 861 ----ISLLIDARDWEEALRVAFM---HRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR 925 (1102)
Q Consensus 861 ----I~~y~~~~~W~eA~rLa~~---h~~~dL~etv~~a~l~~a~~~~~el~e~~~~~~k~~~RL~~lR~~r 925 (1102)
-..|++.++=.+|++.-.. .+... ...-+-.........++..++..| .|+..+|+++
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~------w~iWENymlvsvdvge~eda~~A~-~rll~~~~~~ 620 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQH------WQIWENYMLVSVDVGEFEDAIKAY-HRLLDLRKKY 620 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC------CeeeechhhhhhhcccHHHHHHHH-HHHHHhhhhc
Confidence 2356666666666654322 11100 001123334445578888888888 7999999875
No 390
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=45.37 E-value=4.7e+02 Score=29.00 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 001314 783 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 854 (1102)
Q Consensus 783 ~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl 854 (1102)
|++|...+ ..|++++|++.|.. + ....+.++ ........+|..+...++|.+|...+-+++
T Consensus 36 Y~~A~~~~-~~g~y~~Ai~~f~~------l---~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 36 YATAQQKL-QDGNWKQAITQLEA------L---DNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHH------H---HHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444443 35778888877654 2 22444442 333345678888899999999998886654
No 391
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=45.26 E-value=29 Score=39.38 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=47.0
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecC------Cc---------cccceeeeeecCCCCeEEEEEee
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN------EQ---------IDSTVELLKWNCMSDLLAAVVRF 70 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~------~~---------~~~~v~~L~Wn~DS~iLAv~~~~ 70 (1102)
.+--.|+++|+-- ....||.|||+-++|-|+..= .+ -+++|..+.|-.|+..=-..+.+
T Consensus 33 efd~tg~YlatGD------kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 33 EFDETGLYLATGD------KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred EeccccceEeecC------CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 3444688888732 346999999999998765221 11 13469999999888765555532
Q ss_pred CCCCeEEEEEccc
Q 001314 71 EEYDSVKICFFSN 83 (1102)
Q Consensus 71 ~~~~~vqLWt~~N 83 (1102)
..-.|.||-.-+
T Consensus 107 -NdktiKlWKiye 118 (460)
T COG5170 107 -NDKTIKLWKIYE 118 (460)
T ss_pred -CCceeeeeeeec
Confidence 234799996643
No 392
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=45.15 E-value=2.2e+02 Score=33.60 Aligned_cols=120 Identities=15% Similarity=0.307 Sum_probs=67.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCC-eEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD-SVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~-~vqLWt~~ 82 (1102)
++-|.|.+-..-+++ +|.|.-++ |.-|..............+.-.+++.+||--. .+ -|.||+=.
T Consensus 265 ~V~w~d~~v~yS~Sw-------DHTIk~WD---letg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~DPR 330 (423)
T KOG0313|consen 265 SVVWSDATVIYSVSW-------DHTIKVWD---LETGGLKSTLTTNKSLNCISYSPLSKLLASGS----SDRHIRLWDPR 330 (423)
T ss_pred eEEEcCCCceEeecc-------cceEEEEE---eecccceeeeecCcceeEeecccccceeeecC----CCCceeecCCC
Confidence 456888665555554 56776664 23333322221222466777888899888643 33 47888765
Q ss_pred cceEEE-EEEEEeccCCC-c-eEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCC
Q 001314 83 NNHWYL-KYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGS 144 (1102)
Q Consensus 83 NYHWYL-Kqei~~~~~~~-~-~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~ 144 (1102)
+--=-+ +|. |..... + +++|+|+++++|+-+..+|..-. |++-.. .+-..+|+|-
T Consensus 331 ~~~gs~v~~s--~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl----WDvRS~-k~plydI~~h 388 (423)
T KOG0313|consen 331 TGDGSVVSQS--LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL----WDVRST-KAPLYDIAGH 388 (423)
T ss_pred CCCCceeEEe--eecchhhhhheecCCCCceEEEEEecCCeEEE----EEeccC-CCcceeeccC
Confidence 543111 111 111222 3 48999999998888777776553 655321 2344455554
No 393
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=45.06 E-value=4.9e+02 Score=33.75 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=86.5
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCccee-eeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 82 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhg-eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~ 82 (1102)
+|.-.|+|+.-+.+.- ...-+.|++..+ +|- .+..-..-...++-.+-++++.++|.-- ...+|.+|.-.
T Consensus 165 ~I~~~~~ge~~~i~~~-----~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d---~dGrI~vw~d~ 235 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHM-----CKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGD---SDGRILVWRDF 235 (792)
T ss_pred cEEEcCCceEEEEEEe-----eeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEec---cCCcEEEEecc
Confidence 5666778875555431 245677778777 332 2222111111245577889999999864 33579999321
Q ss_pred cceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEE-EeCCeEEeccCCCCCCCCcc
Q 001314 83 NNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV-IDGSKILVTPLSLSLMPPPM 160 (1102)
Q Consensus 83 NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaV-IDG~~l~lTp~r~a~VPPPM 160 (1102)
+- -..+.. ..+.||...=..|.. ..+|.++. . +.-.++.++ -+|. += ..-.|
T Consensus 236 -~~--------~~~~~t~t~lHWH~~~V~~L~f-S~~G~~Ll-S------GG~E~VLv~Wq~~T-----~~-kqfLP--- 289 (792)
T KOG1963|consen 236 -GS--------SDDSETCTLLHWHHDEVNSLSF-SSDGAYLL-S------GGREGVLVLWQLET-----GK-KQFLP--- 289 (792)
T ss_pred -cc--------ccccccceEEEecccccceeEE-ecCCceEe-e------cccceEEEEEeecC-----CC-ccccc---
Confidence 10 011122 358999665554544 34454331 0 111111111 2221 11 11223
Q ss_pred cccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 161 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 161 ~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
.+.++|.++++|+++ +.++++++|+.|++...++
T Consensus 290 -----RLgs~I~~i~vS~ds--~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 290 -----RLGSPILHIVVSPDS--DLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred -----ccCCeeEEEEEcCCC--CeEEEEecCceEEEEeccc
Confidence 478899999999765 4689999999999998755
No 394
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=45.03 E-value=18 Score=30.80 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=7.1
Q ss_pred HHHHHcCCHHHHHHHHh
Q 001314 801 KAYRASGNWSGVLTVAG 817 (1102)
Q Consensus 801 ~~y~~ag~W~~al~lA~ 817 (1102)
.||.+.|++++|..+..
T Consensus 33 ~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 33 QCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHHHTT-HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 44444444444444433
No 395
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.66 E-value=1.1e+02 Score=37.26 Aligned_cols=68 Identities=25% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHH-HHHHHHHHHHHHcCChHHHHH
Q 001314 770 LEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVA-KLAQELCEELQALGKPGEAAK 848 (1102)
Q Consensus 770 ~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~-~l~~~lA~~L~~~g~~~eAa~ 848 (1102)
|-.+|.-+...++|.+|..+|.+|-.| -+++...++.+... +. .++.++...+.+.+.-..|+.
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sy------------lqe~~~~l~s~~e~---l~~~~~~eli~el~k~k~s~~a~~ 489 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSY------------LQEVNSELESFKES---LLPLLLLELISELQKRKESLGAAV 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhhhhchhhc---ccchHHHHHHHHHHHHHHhhhhhh
Confidence 556788888899999999998887544 22333333333211 11 456666677776666666666
Q ss_pred HHHH
Q 001314 849 IALD 852 (1102)
Q Consensus 849 i~l~ 852 (1102)
|++.
T Consensus 490 il~a 493 (593)
T KOG2460|consen 490 ILLA 493 (593)
T ss_pred hhhh
Confidence 6543
No 396
>PRK04841 transcriptional regulator MalT; Provisional
Probab=44.64 E-value=8.6e+02 Score=31.92 Aligned_cols=84 Identities=12% Similarity=-0.069 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHcCCHHH----------H------HHHHHHcCCHHHHHHHHhhc-C----CChHHHH
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCCSSLEK----------A------MKAYRASGNWSGVLTVAGLL-K----LGKDEVA 827 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ek----------A------l~~y~~ag~W~~al~lA~~l-~----~~~~el~ 827 (1102)
.....|.-+...|++++|..++.++-.... + ..++...|+|++|...+.+. . .......
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 334556666777777777776655422111 0 12344557777776554431 0 1111112
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 828 KLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 828 ~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
.....++......|++.+|...+.+
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2334466677788998888776644
No 397
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.43 E-value=46 Score=40.87 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 852 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ 852 (1102)
+.+|-..|+|++|++||..| +.+ .+.+ ..+=.+|+..|....++.||...|-+
T Consensus 437 GVLy~ls~efdraiDcf~~A------L~v------~Pnd-~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAA------LQV------KPND-YLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHhcchHHHHHHHHHHHH------Hhc------CCch-HHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 45777789999999998763 221 1212 24778888888888888888888754
No 398
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=43.42 E-value=82 Score=40.27 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=43.9
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe-cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE-RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++..|.|.||+++. -+..|..|+ .-|---..|- -+..|..|..|++||.||..= .+...|.||+=
T Consensus 581 d~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~H--vd~~gIylWsN 647 (910)
T KOG1539|consen 581 DMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVH--VDQNGIYLWSN 647 (910)
T ss_pred eeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEE--ecCceEEEEEc
Confidence 578899999999986 245565543 1111111222 234799999999999999875 23456889953
No 399
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=1e+02 Score=35.25 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHcCC--HHH-------HHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCCSS--LEK-------AMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL 837 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~--~ek-------Al~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L 837 (1102)
-++.-.||+-|-..|+.++|..++...-. -.+ .++.+.++..-.+...+-+++..++++ .+.+..+|..+
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd-~~aa~~lA~~~ 246 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDD-VEAALALADQL 246 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 34555677777777777777777766311 111 122333332222111111122122222 23566666666
Q ss_pred HHcCChHHHHHHHHH
Q 001314 838 QALGKPGEAAKIALD 852 (1102)
Q Consensus 838 ~~~g~~~eAa~i~l~ 852 (1102)
...|++++|...++.
T Consensus 247 ~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 247 HLVGRNEAALEHLLA 261 (304)
T ss_pred HHcCCHHHHHHHHHH
Confidence 666666666665543
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.72 E-value=3.5e+02 Score=35.36 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcchHHHHhcc---CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcC
Q 001314 740 ADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASG 807 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~---~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag 807 (1102)
|+.-+.++=| .+|.+.|.-- ..+...+++...=+.|+...+...+|..+-.+||+++.|.+...+.|
T Consensus 318 dd~~~WfryH-~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~ 387 (894)
T COG2909 318 DDEGQWFRYH-HLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLE 387 (894)
T ss_pred cCCCceeehh-HHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhh
Confidence 4555667788 8888888754 45677889999999999999999999999999999999998776663
No 401
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.56 E-value=2.7e+02 Score=32.90 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCC--------------HHHHHH-----HHhhcCC
Q 001314 761 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGN--------------WSGVLT-----VAGLLKL 821 (1102)
Q Consensus 761 ~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~--------------W~~al~-----lA~~l~~ 821 (1102)
+|...+..-+..+||-+.++++.+.|..-|+.| +......|+ |...-. .++.+..
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A------m~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQA------MGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH------HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 455555566778899999999888877666554 333333332 111100 0011111
Q ss_pred ChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 001314 822 GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 822 ~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~ 874 (1102)
.+...+++..++.+|...+-+---|.||-. .|+-++--.-.+++++-.+++
T Consensus 314 -n~r~levA~~IG~K~~vlK~hcrla~iYrs-~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 314 -NTRLLEVASSIGAKLSVLKLHCRLASIYRS-KGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred -HHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHH
Confidence 124456777777777766666666666622 444444333333444444433
No 402
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.42 E-value=95 Score=35.41 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=53.1
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
....|.|.++|+.. .++.|++|.=-|--..--.+.+... .|-++.|+.||..+--. ...-+|..|++-.-
T Consensus 53 ~~F~P~gs~~aSgG------~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~~d~s~i~S~---gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 53 IKFHPDGSCFASGG------SDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGMRDGSHILSC---GTDKTVRGWDAETG 122 (338)
T ss_pred EEECCCCCeEeecC------CcceEEEEeccccccceeeeccccc-eeEeeeeccCCCEEEEe---cCCceEEEEecccc
Confidence 46789999999965 5789999986776666666665433 59999999999976533 33448999988665
Q ss_pred e
Q 001314 85 H 85 (1102)
Q Consensus 85 H 85 (1102)
.
T Consensus 123 ~ 123 (338)
T KOG0265|consen 123 K 123 (338)
T ss_pred e
Confidence 4
No 403
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.10 E-value=1.4e+02 Score=33.08 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWS 810 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~ 810 (1102)
...+.-..|+-+...|+|++|..+|..+ ...|++-|+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~------~~~yr~egW~~ 215 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPA------ASSYRREGWWS 215 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHHhCCcHH
Confidence 3445667888888888999998888775 67777777664
No 404
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=41.79 E-value=7.1e+02 Score=31.64 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=91.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHhcCCcchh---hHHHHHHh-cC----ChhhhchhHHHhhhcHHHHHHHHHHc--CC--
Q 001314 669 EAVYEAALGLYDLNLAAIVALNSQRDPKEF---LPYLQELE-SM----PPLLMRYTIDLRLQRFENALKHIVSM--GD-- 736 (1102)
Q Consensus 669 n~Ly~~ALg~YDl~Lal~VAq~sqkDPkEY---LpfL~~L~-~l----e~~~rr~~Id~~LkryekAl~hl~~~--g~-- 736 (1102)
+.||+.||..|.-. .| |.+++.+= +. |..-++..+-..+|+-++|...-..+ ++
T Consensus 8 ~~lF~~~lk~yE~k--------------QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 8 NALFRRALKCYETK--------------QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 56888888888763 13 44444432 22 23457777778888888887654432 11
Q ss_pred Cc---HHHHHHHHHHHhcchHHHHhcc--------CCcHhHHHH------HHHHHHHHhc-----------ccChHHHHH
Q 001314 737 SY---HADCLNLMKKYAQLFPLGLKLI--------TDPAKMEQV------LEAWADHLSD-----------VKCFEDAAT 788 (1102)
Q Consensus 737 ~~---~deAie~~~~~~~Ly~~AL~L~--------~d~~~~~~i------~~~yAd~L~~-----------~~~~eeAa~ 788 (1102)
++ +--++=++.+ +.|++|++-| ++.+-++++ ++.|--+++. +-.|--++.
T Consensus 74 S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 11 1222222222 5666666655 122222322 1122122222 233444555
Q ss_pred HHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHH--HHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-------HH
Q 001314 789 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE--VAKLAQELCEELQALGKPGEAAKIALDYCGDV-------TN 859 (1102)
Q Consensus 789 ~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~e--l~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~-------e~ 859 (1102)
.+.-.|++..|++....- ..... .+.++.+ ..++..-....+.+.|.+.+|-+.+.++=+++ +.
T Consensus 152 s~~L~g~y~~A~~il~ef------~~t~~-~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEF------EKTQN-TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHH------HHhhc-cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 555555555555443210 00000 1122222 22344444556667777777776655432222 33
Q ss_pred HHHHHHHhcCHHHHHHHHHh
Q 001314 860 GISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 860 AI~~y~~~~~W~eA~rLa~~ 879 (1102)
=..++.+.++.++|..+...
T Consensus 225 ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHH
Confidence 45667777777887765543
No 405
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=41.50 E-value=5.8e+02 Score=29.02 Aligned_cols=143 Identities=15% Similarity=0.231 Sum_probs=73.9
Q ss_pred ccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce------------EEEEEEE-----EeccCCCceEEecCCCCce
Q 001314 49 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH------------WYLKYEI-----RYLRRDGIRFMWHPTKPLQ 111 (1102)
Q Consensus 49 ~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH------------WYLKqei-----~~~~~~~~~~~W~~e~pl~ 111 (1102)
+..+..+.+|.|||+|=-. .+.+...+|..-|-. |++---. -.++.|...-.||-+..-+
T Consensus 10 ERplTqiKyN~eGDLlFsc---aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSC---AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccccceEEecCCCcEEEEe---cCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 4568899999999988643 455678888775532 3331111 0111222234676666666
Q ss_pred EEEEeeCCcEEEEEEEEeeeecCCcEEEEEe---CCeEEeccCCCCCCCCcccccc----ccc-CCceeEEEEecCCCCc
Q 001314 112 LICWTLDGQITTYNFIWTTAVMENSTALVID---GSKILVTPLSLSLMPPPMYLFS----LKF-PTAVTEMAFYSKSSKN 183 (1102)
Q Consensus 112 L~i~t~~g~~~~~~~~w~~~~~d~~~vaVID---G~~l~lTp~r~a~VPPPM~~~~----l~~-~~~i~~vaf~~~~~~~ 183 (1102)
|+.+-.+--+-..+|.+. ++=.+++-| |..-.++-|+...-|......+ |.. ++.++.+-+++.+.
T Consensus 87 la~~k~~~~Vk~~~F~~~----gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-- 160 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFG----GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-- 160 (327)
T ss_pred EEEeecCCeeEEEeeccC----CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC--
Confidence 665544333444443321 111233333 5555555555544333333222 222 23455555655432
Q ss_pred eEEEEEeCCceEEEecC
Q 001314 184 CLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 184 ~~a~vl~~~~l~l~~~~ 200 (1102)
+|.+--.+|.|..|...
T Consensus 161 ~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDAR 177 (327)
T ss_pred EEEEecCCCcEEEEEcc
Confidence 45555677888888764
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.49 E-value=59 Score=32.37 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhcccChHHHHHHHHH
Q 001314 765 KMEQVLEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 765 ~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
+...++..||.+++..++|++|..+|..
T Consensus 97 ~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 97 KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4457788888888888888888888765
No 407
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.11 E-value=79 Score=34.10 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=45.3
Q ss_pred hhcHHHHHHHHHHcCCCcHHHHHHHH---------HHHhcchHHHHhcc-C--CcHhHHHHHHHHHHHHhcccChHHHHH
Q 001314 721 LQRFENALKHIVSMGDSYHADCLNLM---------KKYAQLFPLGLKLI-T--DPAKMEQVLEAWADHLSDVKCFEDAAT 788 (1102)
Q Consensus 721 LkryekAl~hl~~~g~~~~deAie~~---------~~~~~Ly~~AL~L~-~--d~~~~~~i~~~yAd~L~~~~~~eeAa~ 788 (1102)
-+++++|+.+|...=....|+.+..+ ... +.|+.||.+. . ++.-...+.+..||-|...|+-.+|-.
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~-~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ 180 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ-KKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA 180 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence 56788888887743211134444333 244 6788888888 2 332345567788898888888777777
Q ss_pred HHHHc
Q 001314 789 TYFCC 793 (1102)
Q Consensus 789 ~Y~~a 793 (1102)
.|.+|
T Consensus 181 ay~kA 185 (207)
T COG2976 181 AYEKA 185 (207)
T ss_pred HHHHH
Confidence 66654
No 408
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=41.08 E-value=4.3e+02 Score=27.58 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q 001314 785 DAATTYFCCSSLEKAMKAYRAS 806 (1102)
Q Consensus 785 eAa~~Y~~ag~~ekAl~~y~~a 806 (1102)
-|+..|...|+.+.|.++|..+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4666777777777777776653
No 409
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=40.76 E-value=1.4e+02 Score=35.56 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHH
Q 001314 813 LTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK 848 (1102)
Q Consensus 813 l~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~ 848 (1102)
+.||+.++.---+.+ -+..++..+...|.+..|-.
T Consensus 302 LaIAqeL~DriGe~R-acwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 302 LAIAQELEDRIGELR-ACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHhhhhHH-HHHHHHHHHHhhhhHHHHHH
Confidence 455555532222333 46667777777777666544
No 410
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=40.28 E-value=27 Score=42.31 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=45.5
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCC---C-ceEEecCCCCceEEEEeeCCcEEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD---G-IRFMWHPTKPLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~---~-~~~~W~~e~pl~L~i~t~~g~~~~~~~ 126 (1102)
.|.++++++||..||.+- +...+.++ ||+ +||+.-..++ + +|++|+|..-+ ++++-.+.=+.++.|
T Consensus 292 ~in~f~FS~DG~~LA~VS---qDGfLRvF---~fd---t~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS---QDGFLRIF---DFD---TQELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVWSF 361 (636)
T ss_pred cccceeEcCCCceEEEEe---cCceEEEe---ecc---HHHHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEEEe
Confidence 488999999999999985 23467777 445 8888755443 2 78999998877 555443333444333
No 411
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.20 E-value=1.7e+02 Score=31.77 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=10.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
|.+|++...|+.|++-|.+
T Consensus 175 Aeayek~ek~eealeDyKk 193 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKK 193 (271)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 3455555555556655544
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=40.10 E-value=1.2e+02 Score=33.88 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=43.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcc-eeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLr-hgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
.-+|-|.|.+.+... . .....++-+..+|-. .-+...+.... .|..|.|++||.=+|++.+......|++=
T Consensus 70 ~PS~d~~g~~W~v~~-~---~~~~~~~~~~~~g~~~~~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 70 RPSWDPDGWVWTVDD-G---SGGVRVVRDSASGTGEPVEVDWPGLRG-RITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred cccccCCCCEEEEEc-C---CCceEEEEecCCCcceeEEecccccCC-ceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 358999988777643 1 112233333344332 23333332122 79999999999999999976555555543
No 413
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=40.04 E-value=6.3e+02 Score=29.05 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=86.2
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEec-----CCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYER-----NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFER-----NGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
+..||||+||+-.- +....+|.= -|...=.=.|++.... +.--.+-.|+.||.-- .....-||+
T Consensus 104 A~sPSg~~VAcGGL------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgy-lScC~f~dD~~ilT~S----GD~TCalWD 172 (343)
T KOG0286|consen 104 AYSPSGNFVACGGL------DNKCSIYPLSTRDAEGNVRVSRELAGHTGY-LSCCRFLDDNHILTGS----GDMTCALWD 172 (343)
T ss_pred EECCCCCeEEecCc------CceeEEEecccccccccceeeeeecCccce-eEEEEEcCCCceEecC----CCceEEEEE
Confidence 56899999999651 233334432 2322323234443221 2222333377776532 123677888
Q ss_pred cccceEEEEEEEEeccCCC--ceEEecCCCCceEEEEeeCCcEEEEEEEEeee-----------ecC----------CcE
Q 001314 81 FSNNHWYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA-----------VME----------NST 137 (1102)
Q Consensus 81 ~~NYHWYLKqei~~~~~~~--~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~-----------~~d----------~~~ 137 (1102)
.-.-. |.-.|....+ .++.-.|+.+.+++-+..++. -..|++- .+| .++
T Consensus 173 ie~g~----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~----aklWD~R~~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 173 IETGQ----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS----AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred cccce----EEEEecCCcccEEEEecCCCCCCeEEecccccc----eeeeeccCcceeEeecccccccceEEEccCCCee
Confidence 76544 3333443333 456777777765554443332 2334432 112 233
Q ss_pred EEEEeCCeEEeccCCCCCCCCccccc-ccccCCceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 138 ALVIDGSKILVTPLSLSLMPPPMYLF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 138 vaVIDG~~l~lTp~r~a~VPPPM~~~-~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
++=-|-.+..+-.+|.-- -++-| .=....+|+.|+||.++. .+.+=..|.+..+|..
T Consensus 245 atGSDD~tcRlyDlRaD~---~~a~ys~~~~~~gitSv~FS~SGR--lLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQ---ELAVYSHDSIICGITSVAFSKSGR--LLFAGYDDFTCNVWDT 302 (343)
T ss_pred eecCCCceeEEEeecCCc---EEeeeccCcccCCceeEEEccccc--EEEeeecCCceeEeec
Confidence 334666677888887621 11111 112344788999998764 3333356666666653
No 414
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=39.72 E-value=1.7e+02 Score=29.15 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCC-hHHHHHHHHHH
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLG-KDEVAKLAQEL 833 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~-~~el~~l~~~l 833 (1102)
......|...|++..|++.|.++. .. +...++.+ ++++..++.++
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~---~~--l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYR---RR--LREELGIEPSPETRALYREI 145 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH---HH--HHHHHS----HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH---HH--HHHHhCcCcCHHHHHHHHHh
Confidence 344557788888888888887732 22 22345543 34666666543
No 415
>PF15303 RNF111_N: E3 ubiquitin-protein ligase Arkadia N-terminus
Probab=39.57 E-value=34 Score=37.70 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001314 910 KVGKYLTRYLAVRQRRLLLV 929 (1102)
Q Consensus 910 ~~~k~~~RL~~lR~~r~~~~ 929 (1102)
.-+||++||+-+|+||..++
T Consensus 202 RtQKqKERi~lqRkKREa~A 221 (269)
T PF15303_consen 202 RTQKQKERIRLQRKKREAAA 221 (269)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 35689999999999996655
No 416
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.41 E-value=8.5e+02 Score=30.51 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=20.1
Q ss_pred hhhhhHhHhcCCccHHHHHHHHHHHHh
Q 001314 612 LCILTTLARSDPPALEEALERIKIIRE 638 (1102)
Q Consensus 612 l~IlTa~v~k~Pp~le~aL~~i~~l~~ 638 (1102)
+.|.+...++.|+-.+--.-.|..|-+
T Consensus 264 ~kit~~lle~dpfh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 264 LKITEELLEKDPFHLPCLPLHIACLYE 290 (611)
T ss_pred HHHhHHHHhhCCCCcchHHHHHHHHHH
Confidence 468888888888888777666666643
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.40 E-value=2.2e+02 Score=33.11 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc--------CCHHHHHHHHHH
Q 001314 795 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC--------GDVTNGISLLID 866 (1102)
Q Consensus 795 ~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~yl--------gD~e~AI~~y~~ 866 (1102)
..++|-..+.+.|+|++=-++ ..+. +-+..+.++|++||.+|++-+ =+++.+|..-+-
T Consensus 163 ~iekak~liE~GgDWeRrNRl------------KvY~--Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~ 228 (393)
T KOG0687|consen 163 SIEKAKSLIEEGGDWERRNRL------------KVYQ--GLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVI 228 (393)
T ss_pred HHHHHHHHHHhCCChhhhhhH------------HHHH--HHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHH
Confidence 366777777778888754322 1222 334556789999999998843 345666655544
Q ss_pred hc
Q 001314 867 AR 868 (1102)
Q Consensus 867 ~~ 868 (1102)
.+
T Consensus 229 ~g 230 (393)
T KOG0687|consen 229 TG 230 (393)
T ss_pred Hh
Confidence 33
No 418
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=38.32 E-value=59 Score=28.22 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=37.6
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCChhh
Q 001314 839 ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 885 (1102)
Q Consensus 839 ~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL 885 (1102)
...+|..|+.-... .||.+.|-.+.--.+.+++||..+..-.+-|+
T Consensus 7 R~~~yk~Aa~~AK~-~gd~~kAr~~~R~~K~~~~~I~~~~aG~pVd~ 52 (59)
T smart00685 7 RQEQYKQAALQAKR-AGDEEKARRHLRIAKQFDDAIKAARAGRPVDL 52 (59)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhHHHHHHHHHCCCCCCh
Confidence 35678888877644 89999999999999999999998877665554
No 419
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=38.30 E-value=3.9e+02 Score=30.34 Aligned_cols=102 Identities=15% Similarity=0.009 Sum_probs=62.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEe--cCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFE--RNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++..|.|.|.++..+ ..+|-||+ +-|-.|-...+....+ .=---+||..+...||.. +...+-+|++
T Consensus 163 s~~~snd~~~~~~Vgd------s~~Vf~y~id~~sey~~~~~~a~t~D-~gF~~S~s~~~~~FAv~~---Qdg~~~I~DV 232 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGD------SRRVFRYAIDDESEYIENIYEAPTSD-HGFYNSFSENDLQFAVVF---QDGTCAIYDV 232 (344)
T ss_pred eeEEcCCCceEEEecC------CCcceEEEeCCccceeeeeEecccCC-CceeeeeccCcceEEEEe---cCCcEEEEEe
Confidence 5778899999999873 56888886 4444444422221111 223357999999999997 3457999998
Q ss_pred ccceEEEEEEEEeccCC--C-c-eEEecCCCCceEEEEe
Q 001314 82 SNNHWYLKYEIRYLRRD--G-I-RFMWHPTKPLQLICWT 116 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~--~-~-~~~W~~e~pl~L~i~t 116 (1102)
-|..= +--++.....+ + + ..++++-.++.|...+
T Consensus 233 R~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 233 RNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEe
Confidence 87651 11112111111 1 2 2577777777666644
No 420
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=4.5e+02 Score=31.66 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=83.9
Q ss_pred HhccCHHHHHHHHHHhcCCcchhhHHHHHHhcCChhhhchhHHHhhhcHHHHHHHHHHcCC-----CcHHHHHHH---HH
Q 001314 676 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD-----SYHADCLNL---MK 747 (1102)
Q Consensus 676 Lg~YDl~Lal~VAq~sqkDPkEYLpfL~~L~~le~~~rr~~Id~~LkryekAl~hl~~~g~-----~~~deAie~---~~ 747 (1102)
|+.=-++.+-++....|.+|- +|.+ -.|++..-.+|-+.+..|...+.-+.. ...+...++ .-
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~--~dwl-------s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDH--FDWL-------SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY 243 (564)
T ss_pred HhhcchhhhhhhhhheecCCC--ccHH-------HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh
Confidence 555566667777777777774 2432 235666666777777666665553321 011111111 11
Q ss_pred HHhcchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHH--HHHcCCHHHHHHHHH------HcCCHHHHHH
Q 001314 748 KYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATT--YFCCSSLEKAMKAYR------ASGNWSGVLT 814 (1102)
Q Consensus 748 ~~~~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~--Y~~ag~~ekAl~~y~------~ag~W~~al~ 814 (1102)
.. +.|+.|...| -||... .-+..||--|...+.+++-..+ |.-+..-.-|-.-+. ...+++.|+.
T Consensus 244 ~~-Gdn~~a~~~Fe~~~~~dpy~i-~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 244 YN-GDYFQAEDIFSSTLCANPDNV-EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN 321 (564)
T ss_pred hh-cCchHHHHHHHHHhhCChhhh-hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence 22 6677777666 244433 3466777777777777654333 322222112222222 2235666766
Q ss_pred HHhhc-CCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 815 VAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 815 lA~~l-~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
.+.+. ..++..+ +-+..-+..|.+.|++.+|+..|
T Consensus 322 ~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 322 FVEKCIDSEPRNH-EALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HHHHHhccCcccc-hHHHhccHHHHhccchHHHHHHH
Confidence 65442 2222222 22333466666777777776554
No 421
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=38.11 E-value=1.6e+02 Score=37.61 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 001314 823 KDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 881 (1102)
Q Consensus 823 ~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~h~ 881 (1102)
++..+.+..-+|..+...+..++-.+++.- .|.-.+|.+.+..-+.|.+|.-+|..+-
T Consensus 939 ~~~~~s~iKlvAtNmia~d~~~~Gv~LLcl-vg~~~dAC~yLQ~~g~Wt~aa~lAk~~L 996 (1062)
T KOG1912|consen 939 NEKAKSLIKLVATNMIASDLIEDGVELLCL-VGAGGDACKYLQSQGLWTKAAVLAKMGL 996 (1062)
T ss_pred CchHHHHHHHHHHhhhcccccccceeEEEE-eccchHHHHHHHhccchhHHHHHHHhcC
Confidence 334455666778888888998888887643 7888999999999999999999999873
No 422
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=37.85 E-value=8.6e+02 Score=29.97 Aligned_cols=165 Identities=12% Similarity=0.203 Sum_probs=89.0
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
..+|.|-|.++|+.. .....++.--++=+--.|-.| .|..+..++.+.+|-.|.+.. ||
T Consensus 37 ~~~~SP~G~~l~~~~------~~~V~~~~g~~~~~l~~~~~~-----~V~~~~fSP~~kYL~tw~~~p----i~------ 95 (561)
T COG5354 37 YVSESPLGTYLFSEH------AAGVECWGGPSKAKLVRFRHP-----DVKYLDFSPNEKYLVTWSREP----II------ 95 (561)
T ss_pred heeecCcchheehhh------ccceEEccccchhheeeeecC-----CceecccCcccceeeeeccCC----cc------
Confidence 468999999888865 245666766777677777777 688999999999999986422 21
Q ss_pred ceEEEEEEEEeccC--CCceEEecCCCCceEEEEeeCCcEEEEEEEEeee--ecCCcEEEEEeCCeEEeccCCCCCCCCc
Q 001314 84 NHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPP 159 (1102)
Q Consensus 84 YHWYLKqei~~~~~--~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~--~~d~~~vaVIDG~~l~lTp~r~a~VPPP 159 (1102)
| -++.+... ....+.||-...+ |+. +-.+.- .-...|.+. ..|+..+|=+=|+.|.+--+..-..|-|
T Consensus 96 -~----pe~e~sp~~~~n~~~vwd~~sg~-iv~-sf~~~~-q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p 167 (561)
T COG5354 96 -E----PEIEISPFTSKNNVFVWDIASGM-IVF-SFNGIS-QPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHP 167 (561)
T ss_pred -C----hhhccCCccccCceeEEeccCce-eEe-eccccC-CcccccceeeeeecchhhhhhccCeEEEEecCCccccCc
Confidence 0 11111110 0023567766555 222 212110 001113221 1245555544555555555433333444
Q ss_pred ccccccccCCceeEEEEecCCCCceEEEEE-----eCCceEEEecC
Q 001314 160 MYLFSLKFPTAVTEMAFYSKSSKNCLAAIL-----SDGCLCVVDLP 200 (1102)
Q Consensus 160 M~~~~l~~~~~i~~vaf~~~~~~~~~a~vl-----~~~~l~l~~~~ 200 (1102)
..-.. +..|.+.+|++.+....+|..+ ...++.++.++
T Consensus 168 ~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp 210 (561)
T COG5354 168 FKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP 210 (561)
T ss_pred hhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence 43332 4567788888875444444433 22345566655
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.61 E-value=1.3e+02 Score=34.70 Aligned_cols=172 Identities=12% Similarity=0.035 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhc
Q 001314 740 ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 819 (1102)
Q Consensus 740 deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l 819 (1102)
+||....... +++++||+.....-...+-+..+|.......+-+.-...|++- ...-|.++.|.-++|..+.+.+
T Consensus 227 EEa~Ti~~AE-~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKR----RLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 227 EEATTIVDAE-RLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR----RLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred hhhhhHHHHH-HHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHH----HHHHHHHHhhhHHHHHHHHHHH
Confidence 6777777776 8899998865111111223333444433333334445566652 4445677778888887776654
Q ss_pred CCCh--HHHHHHHHHHHHHHHHcCChHHHHHHHHHh--cCCHHHHHHHHHHhcCHHHHHHHHHhcCChhhHHHHHHhHHH
Q 001314 820 KLGK--DEVAKLAQELCEELQALGKPGEAAKIALDY--CGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLE 895 (1102)
Q Consensus 820 ~~~~--~el~~l~~~lA~~L~~~g~~~eAa~i~l~y--lgD~e~AI~~y~~~~~W~eA~rLa~~h~~~dL~etv~~a~l~ 895 (1102)
...- -.+-.+-..+-+.|-+..-|.+.-.++.+| +..++.|.-+|-.+-.=.. .++.+.. +|. -.-..+.
T Consensus 302 ~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R--AVa~kFs-pd~---asrRGLS 375 (556)
T KOG3807|consen 302 MKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR--AVSEKFS-PET---ASRRGLS 375 (556)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH--HHHhhcC-chh---hhhcccc
Confidence 2111 112234556777788888888888787776 5567888888876643332 3444443 221 1112344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001314 896 CASSLIGEYKEGLEKVGKYLTR-YLAVR 922 (1102)
Q Consensus 896 ~a~~~~~el~e~~~~~~k~~~R-L~~lR 922 (1102)
.|+....|.--.--.|+-|++. |.|+|
T Consensus 376 ~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 376 TAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 4444444432222335555544 33444
No 424
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=37.53 E-value=6.7e+02 Score=28.58 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=50.3
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYN 125 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~ 125 (1102)
.+..++.+.|+..++++- +..+|-+|..-|=-.|+-..-.-+..|. -+..|+...-+ +++++++|.+-+|+
T Consensus 160 ~~ns~~~snd~~~~~~Vg---ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVG---DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-FAVVFQDGTCAIYD 231 (344)
T ss_pred ceeeeEEcCCCceEEEec---CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-EEEEecCCcEEEEE
Confidence 377899999999999984 4567999988887777655222333343 56789877655 88888777665544
No 425
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=37.23 E-value=2.2e+02 Score=28.41 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=47.9
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 001314 817 GLLKLGKDEVAKLAQELCEELQALGK-PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 879 (1102)
Q Consensus 817 ~~l~~~~~el~~l~~~lA~~L~~~g~-~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~~ 879 (1102)
.++++++++.-++-..||+++....+ ..++.+++.+..=-.++|-+++-++++-..|+.++..
T Consensus 87 ~ri~mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~aleeagDl~~A~k~l~~ 150 (153)
T COG4008 87 NRINMSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREALEEAGDLRTAMKILRM 150 (153)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46789999998999999999875544 5677777777444667788888888888888777654
No 426
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=36.79 E-value=2.2e+02 Score=34.24 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=67.8
Q ss_pred eeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEecc-CCC-ceEEecCCCCceEEEEeeC
Q 001314 41 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDG-IRFMWHPTKPLQLICWTLD 118 (1102)
Q Consensus 41 eF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~-~~~-~~~~W~~e~pl~L~i~t~~ 118 (1102)
.|.+|+ .|..|.=+++|..|+.-. .+..|+||.++.-.= |+ . +.. -.. .++++.....+ |+-+..+
T Consensus 77 ~~v~Pg----~v~al~s~n~G~~l~ag~---i~g~lYlWelssG~L-L~-v--~~aHYQ~ITcL~fs~dgs~-iiTgskD 144 (476)
T KOG0646|consen 77 YIVLPG----PVHALASSNLGYFLLAGT---ISGNLYLWELSSGIL-LN-V--LSAHYQSITCLKFSDDGSH-IITGSKD 144 (476)
T ss_pred hccccc----ceeeeecCCCceEEEeec---ccCcEEEEEeccccH-HH-H--HHhhccceeEEEEeCCCcE-EEecCCC
Confidence 444555 699999999999999873 266799998765330 00 0 000 011 34566555444 5555556
Q ss_pred CcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCccccc-ccccCCceeEEEEecCCCCceEEEEEeCCceEEE
Q 001314 119 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 197 (1102)
Q Consensus 119 g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~-~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~ 197 (1102)
|.++++....-++ +++.. .|-|.+.+ .-++ +|.|+-...++....+..+-.|+++.+|
T Consensus 145 g~V~vW~l~~lv~------------------a~~~~-~~~p~~~f~~Htl--sITDl~ig~Gg~~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 145 GAVLVWLLTDLVS------------------ADNDH-SVKPLHIFSDHTL--SITDLQIGSGGTNARLYTASEDRTIKLW 203 (476)
T ss_pred ccEEEEEEEeecc------------------cccCC-CccceeeeccCcc--eeEEEEecCCCccceEEEecCCceEEEE
Confidence 6666533333222 22222 24454433 2233 4556555554433345555667777777
Q ss_pred ec
Q 001314 198 DL 199 (1102)
Q Consensus 198 ~~ 199 (1102)
.+
T Consensus 204 dl 205 (476)
T KOG0646|consen 204 DL 205 (476)
T ss_pred Ee
Confidence 75
No 427
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=36.50 E-value=6.1e+02 Score=27.85 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=72.8
Q ss_pred CeEEEEecCC------cceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccCCC-
Q 001314 27 PSIVFYERNG------LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG- 99 (1102)
Q Consensus 27 ~~VvFFERNG------LrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~~~- 99 (1102)
..|.+||-++ ....||.+|. .+..+.|- ++.++|.. .+...+-+..+-. .+++.-.....
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~lp~----~~~~i~~~--~~~i~v~~----~~~f~~idl~~~~---~~~l~~~~~~~~ 180 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISLPD----PPSSIAFL--GNKICVGT----SKGFYLIDLNTGS---PSELLDPSDSSS 180 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEcCC----CcEEEEEe--CCEEEEEe----CCceEEEecCCCC---ceEEeCccCCcc
Confidence 3788888776 4557888985 68889999 77777776 4456666665433 33333111111
Q ss_pred -ceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEec
Q 001314 100 -IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 178 (1102)
Q Consensus 100 -~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~ 178 (1102)
..-.....+|+.+.-+. ++.++.. + .+.|...-.+|. |+. -..++.++.+..+++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~-~~e~Ll~---~----~~~g~fv~~~G~------------~~r--~~~i~W~~~p~~~~~~~ 238 (275)
T PF00780_consen 181 SFKSRNSSSKPLGIFQLS-DNEFLLC---Y----DNIGVFVNKNGE------------PSR--KSTIQWSSAPQSVAYSS 238 (275)
T ss_pred hhhhcccCCCceEEEEeC-CceEEEE---e----cceEEEEcCCCC------------cCc--ccEEEcCCchhEEEEEC
Confidence 11123334454333322 2333221 1 111222223454 222 45667777777888754
Q ss_pred CCCCceEEEEEeCCceEEEecCC
Q 001314 179 KSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 179 ~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
. .+.+ ++++.+.++++.+
T Consensus 239 p----yli~-~~~~~iEV~~~~~ 256 (275)
T PF00780_consen 239 P----YLIA-FSSNSIEVRSLET 256 (275)
T ss_pred C----EEEE-ECCCEEEEEECcC
Confidence 2 4444 6667799998754
No 428
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=36.49 E-value=68 Score=36.34 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=47.5
Q ss_pred eecc--CCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEccc
Q 001314 6 EWMP--SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 83 (1102)
Q Consensus 6 sWrP--sGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~N 83 (1102)
.|.| .||.+|+++ ...+-||+=- --|--..+...-...|+.|..|++-.-.-+- +++...|.||++-+
T Consensus 177 ~WspHHdgnqv~tt~-------d~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt--~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 177 AWSPHHDGNQVATTS-------DSTLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVT--CGDDGYVRIWDTRK 246 (370)
T ss_pred ccCCCCccceEEEeC-------CCcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEE--cCCCccEEEEeccC
Confidence 6999 999999997 3467777632 1222233332223469999999988765444 46667999999977
Q ss_pred ce
Q 001314 84 NH 85 (1102)
Q Consensus 84 YH 85 (1102)
-+
T Consensus 247 tk 248 (370)
T KOG1007|consen 247 TK 248 (370)
T ss_pred CC
Confidence 65
No 429
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=36.03 E-value=43 Score=27.87 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=24.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHhccccc
Q 001314 487 LTSIVNALIQGRFRDALVMVRRHRINF 513 (1102)
Q Consensus 487 L~~ir~~L~~~~Y~~Af~~~RkhRIdl 513 (1102)
...|++.|..|++.+|+..|..+.-.+
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 467899999999999999999998765
No 430
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=35.71 E-value=88 Score=40.27 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=51.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCC-HHHHHHHHh-hcCCCh---------------HHHHHHHHHHHHHHHHc---CChHH
Q 001314 786 AATTYFCCSSLEKAMKAYRASGN-WSGVLTVAG-LLKLGK---------------DEVAKLAQELCEELQAL---GKPGE 845 (1102)
Q Consensus 786 Aa~~Y~~ag~~ekAl~~y~~ag~-W~~al~lA~-~l~~~~---------------~el~~l~~~lA~~L~~~---g~~~e 845 (1102)
+.--+.++|++++|.+-...+|+ |+ |..+.. +...++ ...+.+-+..+-.|.+. ..|+.
T Consensus 139 ~i~~llR~G~~~eA~~lc~~~gq~wr-AasL~G~~~~~dp~~~~~~~~~~~~~~G~~~r~LWk~~c~~ls~~~~~~~yEr 217 (697)
T PF04121_consen 139 YIFELLRAGRIEEAQELCRERGQPWR-AASLCGWQLYHDPNLDPELSDEDERMEGNRSRALWKRACYKLSQNPNLDPYER 217 (697)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-HHH-HHHHHTTSB-B-TTTSGGGTTT-SS-BSBTTHHHHHHHHHHHHHTSSS-HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHH-HHHHcCccccCCcccccccccccccccCChhHHHHHHHHHHHHhCCCCCHHHH
Confidence 34467899999999999999998 65 555543 111111 01256777777788765 34666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 001314 846 AAKIALDYCGDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 846 Aa~i~l~ylgD~e~AI~~y~~~~~W~eA~ 874 (1102)
|.--+ .+||++.+...++ ..|++.+
T Consensus 218 aiY~~--L~G~~~~~l~~~~--~sWeD~l 242 (697)
T PF04121_consen 218 AIYGA--LSGDLSSVLPVCS--SSWEDYL 242 (697)
T ss_dssp HHHHH--HHTS---HHHHTT---SHHHHH
T ss_pred HHHHH--HhcccHhhhhhcc--CCHHHHH
Confidence 65444 3799999999886 4899976
No 431
>PF12854 PPR_1: PPR repeat
Probab=35.27 E-value=51 Score=24.83 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 001314 858 TNGISLLIDARDWEEALRVA 877 (1102)
Q Consensus 858 e~AI~~y~~~~~W~eA~rLa 877 (1102)
..-|..||+.+++++|+++-
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 45677777777777777654
No 432
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.76 E-value=1.6e+02 Score=33.98 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=58.8
Q ss_pred eeeccCCCeEEEEeeccCCC-CCCeEEEEecCCcceeeeecCCcc----ccceeeeeecCCCCeEEEEEeeCCCCeEEEE
Q 001314 5 LEWMPSGANIAAVYDRKSEN-KCPSIVFYERNGLERSSFDINEQI----DSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 79 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~-~~~~VvFFERNGLrhgeF~L~~~~----~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLW 79 (1102)
|+|.++|-...+.|...+.. .-.-|.++.|.+. --.|..|... .--|-+++.+.|+..+|+-. ...+++++|
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts--PrGg~~~~~ 244 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS--PRGGRVAVW 244 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC--CCCCEEEEE
Confidence 78999999888888765322 3467888888774 3345555321 22489999999999999865 778899999
Q ss_pred EcccceEE
Q 001314 80 FFSNNHWY 87 (1102)
Q Consensus 80 t~~NYHWY 87 (1102)
...+-.|-
T Consensus 245 d~~tg~~~ 252 (305)
T PF07433_consen 245 DAATGRLL 252 (305)
T ss_pred ECCCCCEe
Confidence 88887753
No 433
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=1.3e+02 Score=38.21 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHcCCHHHHHHHHHHcCC-HHHHH-HHHhhcCCC------------hHHHHHHHHHHHHHHHHcC---ChH
Q 001314 782 CFEDAATTYFCCSSLEKAMKAYRASGN-WSGVL-TVAGLLKLG------------KDEVAKLAQELCEELQALG---KPG 844 (1102)
Q Consensus 782 ~~eeAa~~Y~~ag~~ekAl~~y~~ag~-W~~al-~lA~~l~~~------------~~el~~l~~~lA~~L~~~g---~~~ 844 (1102)
++-.+.--.++||..++|++..+++|+ |+.|. .--+.+.-+ -.+.+.+-+..+=.|.+.+ .|+
T Consensus 222 ~~~k~~F~LIRaG~~deal~Lck~~G~~wr~A~LqG~~~y~dPnl~i~~E~~~~eGn~~k~lwrrs~~~ltq~k~~d~Ye 301 (800)
T KOG1964|consen 222 RFFKYIFELIRAGETDEALELCKRLGNGWRAAILQGISEYRDPNLDIPLEASPQEGNKYKRLWRRSCYQLTQEKSQDSYE 301 (800)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHhCcHHHHHHHHHHHHhhCCCccchhhhCcccCCcHHHHHHHHHHHHHHhhccChHH
Confidence 344455667899999999999999998 88773 222222111 0234566666666676554 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 001314 845 EAAKIALDYCGDVTNGISLLIDARDWEEAL 874 (1102)
Q Consensus 845 eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~ 874 (1102)
.|--.+ .+|+...-.-++- .+ |++++
T Consensus 302 RA~y~~--lSG~l~nl~~l~~-s~-Wed~v 327 (800)
T KOG1964|consen 302 RAIYGA--LSGILGNLLPLLK-SG-WEDKV 327 (800)
T ss_pred HHHHHH--HhccccchhhHHh-cc-hHHHH
Confidence 554333 2466555444443 33 88776
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.25 E-value=4.4e+02 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 825 EVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 825 el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
.+..++...|..|+..|++.+|..||
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34578999999999999999999998
No 435
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=34.06 E-value=53 Score=23.72 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=9.2
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
+.+|...|++++|+++|.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 3445555555555555443
No 436
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.96 E-value=4.8e+02 Score=30.40 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCC-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 767 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGN-WSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 767 ~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~-W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
..+.++-.+-+...++.+++..--.+.-....++++.....+ -+..-.+...++..++.+. .+.++|...-+-|.|..
T Consensus 69 ~a~~ekr~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~-~lykyakfqyeCGNY~g 147 (432)
T KOG2758|consen 69 NALVEKRTEVLAELKELEEEVAPIVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIE-TLYKYAKFQYECGNYSG 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHhccCccc
Confidence 345555666666667776666555555444456666554443 4445567778888876654 67789999999999999
Q ss_pred HHHHHHHh
Q 001314 846 AAKIALDY 853 (1102)
Q Consensus 846 Aa~i~l~y 853 (1102)
|+..+..|
T Consensus 148 As~yLY~~ 155 (432)
T KOG2758|consen 148 ASDYLYFY 155 (432)
T ss_pred HHHHHHHH
Confidence 99876554
No 437
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=33.59 E-value=1e+02 Score=29.76 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHHhcCHHHHHHHHHhcCChhhH
Q 001314 863 LLIDARDWEEALRVAFMHRREDLI 886 (1102)
Q Consensus 863 ~y~~~~~W~eA~rLa~~h~~~dL~ 886 (1102)
.+..-+.|++|+++...+.-|||.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdle 71 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLE 71 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHH
Confidence 356678899999999888878864
No 438
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=1e+02 Score=38.46 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=42.0
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEec--cCCCc-eEEecCCCCceEEEEeeCCcEEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL--RRDGI-RFMWHPTKPLQLICWTLDGQITT 123 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~--~~~~~-~~~W~~e~pl~L~i~t~~g~~~~ 123 (1102)
.++-+.||+-=+++|+.++ ++ -|- -++.|+| .-+.++ ..+.. +++|.|...+ |+|+-.+|.+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~--~g-ell-i~R~n~q----Rlwtip~p~~~v~~sL~W~~DGkl-laVg~kdG~I~L 88 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTE--KG-ELL-IHRLNWQ----RLWTIPIPGENVTASLCWRPDGKL-LAVGFKDGTIRL 88 (665)
T ss_pred ceEEEEEcCccchhheecc--CC-cEE-EEEeccc----eeEeccCCCCccceeeeecCCCCE-EEEEecCCeEEE
Confidence 5888999999999999983 22 243 3555644 223344 33333 6999998777 888776655544
No 439
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.41 E-value=2.8e+02 Score=31.87 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred cHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHcCCc
Q 001314 498 RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 539 (1102)
Q Consensus 498 ~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv~~~ 539 (1102)
.--+|++.+..|.+|| ++.|-+-| -| |.-+|++||.++
T Consensus 32 ~~~eal~~Le~~kpDL-ifldI~mp--~~-ngiefaeQvr~i 69 (361)
T COG3947 32 HPVEALDLLEVFKPDL-IFLDIVMP--YM-NGIEFAEQVRDI 69 (361)
T ss_pred CHHHHHHHHHhcCCCE-EEEEeecC--Cc-cHHHHHHHHHHh
Confidence 3468999999999998 55565522 12 335588887654
No 440
>PRK15331 chaperone protein SicA; Provisional
Probab=33.39 E-value=2.2e+02 Score=29.98 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 001314 785 DAATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 785 eAa~~Y~~ag~~ekAl~~y~~ 805 (1102)
-|+..|...|+.++|.+||..
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHH
Confidence 355666666666666666543
No 441
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=33.25 E-value=1.4e+02 Score=22.20 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=22.5
Q ss_pred EEEEEEeccCCC-ceEEecCCCCceEEEEeeCCcEEEEE
Q 001314 88 LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYN 125 (1102)
Q Consensus 88 LKqei~~~~~~~-~~~~W~~e~pl~L~i~t~~g~~~~~~ 125 (1102)
+++.+.-. ... .++.|+|...+ |+.+..+|.+.+++
T Consensus 3 ~~~~~~~h-~~~i~~i~~~~~~~~-~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGH-SSSINSIAWSPDGNF-LASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESS-SSSEEEEEEETTSSE-EEEEETTSEEEEEE
T ss_pred EEEEEcCC-CCcEEEEEEeccccc-ceeeCCCCEEEEEC
Confidence 44544422 233 46999999555 77777778776643
No 442
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=33.18 E-value=6e+02 Score=30.00 Aligned_cols=143 Identities=13% Similarity=0.012 Sum_probs=78.5
Q ss_pred CeEEEEecCCcc-eeeeecCCccccceeeeeecCCCCeEEEEEe-------eCCCCeEEEEEcccceEEEEEEEEeccCC
Q 001314 27 PSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVR-------FEEYDSVKICFFSNNHWYLKYEIRYLRRD 98 (1102)
Q Consensus 27 ~~VvFFERNGLr-hgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~-------~~~~~~vqLWt~~NYHWYLKqei~~~~~~ 98 (1102)
.+|..++-.-++ -|.+..-. .-..+ =++|+..|.|... .+..|.|++|+..+.. ...+|..+.+-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~----~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF----LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC----CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCc
Confidence 467777754443 46665432 12234 8999999999863 1256899999999988 45667665331
Q ss_pred CceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEec
Q 001314 99 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 178 (1102)
Q Consensus 99 ~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~ 178 (1102)
. +. ....|..+.+ +.+|+++ |..+.+..+.|+|||=.+=++. +-||-|.|..-+..++
T Consensus 100 ~--~~-~~~~~~~~~l-s~dgk~l-----~V~n~~p~~~V~VvD~~~~kvv----~ei~vp~~~~vy~t~e--------- 157 (352)
T TIGR02658 100 R--FL-VGTYPWMTSL-TPDNKTL-----LFYQFSPSPAVGVVDLEGKAFV----RMMDVPDCYHIFPTAN--------- 157 (352)
T ss_pred h--hh-ccCccceEEE-CCCCCEE-----EEecCCCCCEEEEEECCCCcEE----EEEeCCCCcEEEEecC---------
Confidence 1 00 1112332333 6666543 2223344678999994332221 1134455544333221
Q ss_pred CCCCceEEEEEeCCceEEEecCCC
Q 001314 179 KSSKNCLAAILSDGCLCVVDLPAP 202 (1102)
Q Consensus 179 ~~~~~~~a~vl~~~~l~l~~~~~~ 202 (1102)
..+.+...|+++..+.+++.
T Consensus 158 ----~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 158 ----DTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred ----CccEEEeecCceEEEEecCC
Confidence 12355667777777666543
No 443
>COG0819 TenA Putative transcription activator [Transcription]
Probab=33.04 E-value=6.3e+02 Score=27.77 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=28.9
Q ss_pred HHHHHHhc--CC-hhhhchhHHH--hhhcHHHHHHHHHHcC
Q 001314 700 PYLQELES--MP-PLLMRYTIDL--RLQRFENALKHIVSMG 735 (1102)
Q Consensus 700 pfL~~L~~--le-~~~rr~~Id~--~LkryekAl~hl~~~g 735 (1102)
||+++|.+ || +..+.|.+.| ||..|.+|+-....-.
T Consensus 22 ~FV~~L~~GtL~~~~F~~YL~QDy~YL~~~~ra~~~~~~ka 62 (218)
T COG0819 22 PFVQELADGTLPREKFQFYLVQDYLYLVNFARALALLASKA 62 (218)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999986 65 4578888877 7899999998887654
No 444
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=32.91 E-value=48 Score=24.24 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=12.7
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
+.+|...|++++|+++|.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHH
Confidence 4567777777777777665
No 445
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=32.86 E-value=2e+02 Score=34.27 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHhcCHHHHHHHHHhcCC
Q 001314 860 GISLLIDARDWEEALRVAFMHRR 882 (1102)
Q Consensus 860 AI~~y~~~~~W~eA~rLa~~h~~ 882 (1102)
-++..|..++|+.|++|+.....
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHH
Confidence 35667888888888888766543
No 446
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=4.4e+02 Score=31.04 Aligned_cols=116 Identities=15% Similarity=0.013 Sum_probs=75.1
Q ss_pred hhcHHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHHHHHcCCHH---
Q 001314 721 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE--- 797 (1102)
Q Consensus 721 LkryekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~e--- 797 (1102)
-||-..|--.|.-- .||+.+.|...- +-|. +.|+... -.+|+-....|+|.+|.++|.+-...+
T Consensus 360 pGRQsmAs~fFL~~---qFddVl~YlnSi-~sYF-----~NdD~Fn----~N~AQAk~atgny~eaEelf~~is~~~ikn 426 (557)
T KOG3785|consen 360 PGRQSMASYFFLSF---QFDDVLTYLNSI-ESYF-----TNDDDFN----LNLAQAKLATGNYVEAEELFIRISGPEIKN 426 (557)
T ss_pred cchHHHHHHHHHHH---HHHHHHHHHHHH-HHHh-----cCcchhh----hHHHHHHHHhcChHHHHHHHhhhcChhhhh
Confidence 56666666666543 288888887665 3331 1344332 235555566789999999999887665
Q ss_pred ------HHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 798 ------KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 798 ------kAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
-..+||++++.=+-|-.+.-..+- +.|.-.|..-+|...-..+++--|++.|
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 245899999973333333323332 3344568888888888888888888877
No 447
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.64 E-value=2.5e+02 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=18.2
Q ss_pred HHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 001314 804 RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQ 838 (1102)
Q Consensus 804 ~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~ 838 (1102)
..++...+|+..++.... +....+.+.+.+++.
T Consensus 151 La~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHH
Confidence 456677777777776532 222344555555544
No 448
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.61 E-value=3.7e+02 Score=36.11 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=37.8
Q ss_pred CCeEEEEecCCcceee--------------eecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccce
Q 001314 26 CPSIVFYERNGLERSS--------------FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 85 (1102)
Q Consensus 26 ~~~VvFFERNGLrhge--------------F~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH 85 (1102)
+.--||=++|=|+.+- -+++.+.+..+..+.=++|.++++|..... +..|..++..-+.
T Consensus 63 k~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs 135 (1405)
T KOG3630|consen 63 KSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFS 135 (1405)
T ss_pred cceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC-CceEEEEehHhhh
Confidence 4456777888776652 111122344578888899999999887433 5677777765444
No 449
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=32.30 E-value=2.5e+02 Score=30.38 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=45.7
Q ss_pred hhchhHHHhhhcHHHHHHHHHHc--CCCcHHHHHHHH-----HHHhcchHHHHhcc-----CCcHhH-HHHHHHHHHHHh
Q 001314 712 LMRYTIDLRLQRFENALKHIVSM--GDSYHADCLNLM-----KKYAQLFPLGLKLI-----TDPAKM-EQVLEAWADHLS 778 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~--g~~~~deAie~~-----~~~~~Ly~~AL~L~-----~d~~~~-~~i~~~yAd~L~ 778 (1102)
++-..--.-+|||.+|..||.++ |.=..|.++-+= ... +.+..|+.+. +.|... .+-+..||.-|.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 34445556799999999999985 320012332221 122 3344454443 233322 244567888888
Q ss_pred cccChHHHHHHHHH
Q 001314 779 DVKCFEDAATTYFC 792 (1102)
Q Consensus 779 ~~~~~eeAa~~Y~~ 792 (1102)
..+++++|...|+.
T Consensus 172 a~g~~a~Aesafe~ 185 (251)
T COG4700 172 AQGKYADAESAFEV 185 (251)
T ss_pred hcCCchhHHHHHHH
Confidence 88888888776654
No 450
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.64 E-value=1.5e+03 Score=30.92 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=37.7
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 001314 816 AGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 867 (1102)
Q Consensus 816 A~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~ 867 (1102)
+..++.+++++..|..++.+.+.+....+. |+.+-.+|+..|-.+.-++
T Consensus 1503 ~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~---IL~~T~~di~ra~~L~s~A 1551 (1758)
T KOG0994|consen 1503 ALELPLTPEQIQQLTGEIQERVASLPNVDA---ILSRTKGDIARAENLQSEA 1551 (1758)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhcccHHH---HHHhhhhhHHHHHHHHHHH
Confidence 345778899999999999999988776553 4445589999888887654
No 451
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=31.35 E-value=4.1e+02 Score=27.15 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHhcCCHHHHHHHHHHhcCHHH
Q 001314 798 KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP--GEAAKIALDYCGDVTNGISLLIDARDWEE 872 (1102)
Q Consensus 798 kAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~--~eAa~i~l~ylgD~e~AI~~y~~~~~W~e 872 (1102)
..+..|.+.|+|.+|+.+|-.++.+. .+-.+..++...=.+.+.. .+=..+ +. -=+.+.-..++.-...|.-
T Consensus 2 Q~L~N~l~~~~y~~Al~LAl~L~~P~-~ll~i~~~~~~~~~~~~~~g~~~l~~~-i~-~L~~~~l~~LL~~ir~WNT 75 (141)
T PF08625_consen 2 QELSNLLRQKDYKEALRLALKLDHPF-RLLKILKDLLETEEDEDSIGSEELDEV-IK-KLDDEQLEKLLRFIRDWNT 75 (141)
T ss_pred chHHHHHHhhhHHHHHHHHHhcCCcH-HHHHHHHHHHhcccccccchHHHHHHH-HH-hcCHHHHHHHHHHHHHhhc
Confidence 45677888888888888888887654 2233444333200112221 111111 12 1244555567777777753
No 452
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=30.89 E-value=97 Score=36.14 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=33.2
Q ss_pred CceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCC--------c-----cc--cceeeeeecCCCCeEEEE
Q 001314 3 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE--------Q-----ID--STVELLKWNCMSDLLAAV 67 (1102)
Q Consensus 3 ~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~--------~-----~~--~~v~~L~Wn~DS~iLAv~ 67 (1102)
+...|.|.|+.||-+. ..+|-+.+--+-.--..+--+ + .| ..-..+-||+||.-||..
T Consensus 46 ~~~~~sP~g~~~~~v~-------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVR-------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp SEEEE-SSSTEEEEEE-------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccceeecCCCeeEEEe-------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 4578999999999986 235555543222111111111 0 01 124678899999999987
Q ss_pred E
Q 001314 68 V 68 (1102)
Q Consensus 68 ~ 68 (1102)
-
T Consensus 119 ~ 119 (353)
T PF00930_consen 119 R 119 (353)
T ss_dssp E
T ss_pred E
Confidence 5
No 453
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=30.75 E-value=4.8e+02 Score=27.50 Aligned_cols=82 Identities=22% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHh---cC-CHHHHHHHHHHhcCHH
Q 001314 796 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY---CG-DVTNGISLLIDARDWE 871 (1102)
Q Consensus 796 ~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~y---lg-D~e~AI~~y~~~~~W~ 871 (1102)
++--+++..+.|.+..+..+..-.-.++ -+.+|..+ |.-.+.|..|.++-++. ++ ..++-++++..-++.-
T Consensus 32 ~~lli~lLi~~~~~~~L~qllq~~Vi~D--Sk~lA~~L---Ls~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl 106 (167)
T PF07035_consen 32 YELLIDLLIRNGQFSQLHQLLQYHVIPD--SKPLACQL---LSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVL 106 (167)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhcccCC--cHHHHHHH---HHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHH
Confidence 5566788888888777766654321221 13455443 22234555555555443 67 8888999999999999
Q ss_pred HHHHHHHhcCC
Q 001314 872 EALRVAFMHRR 882 (1102)
Q Consensus 872 eA~rLa~~h~~ 882 (1102)
+|+|.|.+.+.
T Consensus 107 ~ALr~ar~~~~ 117 (167)
T PF07035_consen 107 EALRYARQYHK 117 (167)
T ss_pred HHHHHHHHcCC
Confidence 99999988543
No 454
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=30.73 E-value=2.7e+02 Score=30.49 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=31.1
Q ss_pred cccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEec
Q 001314 159 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 199 (1102)
Q Consensus 159 PM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~ 199 (1102)
+|.--+|.+.+++.++|.-+-.+. .+|-++++|.+|++
T Consensus 125 qleiiElPl~~~p~ciaCC~~tG~---LlVg~~~~l~lf~l 162 (215)
T PF14761_consen 125 QLEIIELPLSEPPLCIACCPVTGN---LLVGCGNKLVLFTL 162 (215)
T ss_pred ceEEEEecCCCCCCEEEecCCCCC---EEEEcCCEEEEEEE
Confidence 577778888888999998886554 66789999999986
No 455
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=30.14 E-value=3.8e+02 Score=28.20 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 822 GKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 822 ~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
.+++++....++|+++.+.|++.+|.+.|.
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~ 60 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYS 60 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555556666666666666666666553
No 456
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=29.71 E-value=62 Score=25.55 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=11.6
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
+..|...|++++|+++|.+
T Consensus 8 a~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4456666666666666554
No 457
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=29.32 E-value=78 Score=22.81 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
.++...|..+...++|++|...|.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35667888999999999999988775
No 458
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.30 E-value=3e+02 Score=31.66 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=46.0
Q ss_pred CCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 134 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 134 d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
|+.+|.=-|-.++++=.||. |-.|++ .|..++++|-|+.+.+.. .|++--.|+.+-+|.++.
T Consensus 368 dd~vVSgSDDrTvKvWdLrN--MRsplA--TIRtdS~~NRvavs~g~~--iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 368 DDRVVSGSDDRTVKVWDLRN--MRSPLA--TIRTDSPANRVAVSKGHP--IIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred CCceeecCCCceEEEeeecc--ccCcce--eeecCCccceeEeecCCc--eEEeccCCceEEEEecCC
Confidence 55666667888899988876 577775 577899999999988653 445545666799998753
No 459
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=29.23 E-value=4.7e+02 Score=32.01 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCC----HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHH
Q 001314 785 DAATTYFCCSSLEKAMKAYRASGN----WSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNG 860 (1102)
Q Consensus 785 eAa~~Y~~ag~~ekAl~~y~~ag~----W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l~ylgD~e~A 860 (1102)
.++.++..-|+.++|+++|..+.. |++.-.+ ..-+++-.+.-.++|++|+..+..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l-------------~~~El~w~~~~~~~w~~A~~~f~~-------- 330 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL-------------CYFELAWCHMFQHDWEEAAEYFLR-------- 330 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH-------------HHHHHHHHHHHHchHHHHHHHHHH--------
Confidence 445666677888888888886542 4443222 345556666677888888887754
Q ss_pred HHHHHHhcCHHHHHH
Q 001314 861 ISLLIDARDWEEALR 875 (1102)
Q Consensus 861 I~~y~~~~~W~eA~r 875 (1102)
+++-+.|..|+.
T Consensus 331 ---L~~~s~WSka~Y 342 (468)
T PF10300_consen 331 ---LLKESKWSKAFY 342 (468)
T ss_pred ---HHhccccHHHHH
Confidence 555667777763
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.15 E-value=2.1e+02 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCC
Q 001314 784 EDAATTYFCCSSLEKAMKAYRASGN 808 (1102)
Q Consensus 784 eeAa~~Y~~ag~~ekAl~~y~~ag~ 808 (1102)
-.-|.-+...|++++|+++|..+-.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445566778999999999987653
No 461
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.10 E-value=3.2e+02 Score=32.45 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=63.8
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCC--CeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS--~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.|...|+|.+||++..- .--.|.-|-.-|=.=..|...+......-++.|. +.|=+.........|-+|..
T Consensus 191 DL~FS~dgk~lasig~d-------~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 191 DLDFSPDGKFLASIGAD-------SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred cceeCCCCcEEEEecCC-------ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe
Confidence 47788999999998731 2333443332111111122223334445555555 33333333355678888999
Q ss_pred ccceE----EEEEEEEeccCCCc-eEEecCCCCceEEEEeeCCcEEEEE
Q 001314 82 SNNHW----YLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDGQITTYN 125 (1102)
Q Consensus 82 ~NYHW----YLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g~~~~~~ 125 (1102)
+-+|| -++|-+. ...++ ++.=++.+-+ ++++|.+|.+.+|+
T Consensus 264 ~~w~~~~~l~~~~~~~--~~~siSsl~VS~dGkf-~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIK--RFKSISSLAVSDDGKF-LALGTMDGSVAIYD 309 (398)
T ss_pred eeeccccccchhhhhh--ccCcceeEEEcCCCcE-EEEeccCCcEEEEE
Confidence 99998 4444332 11233 4666676667 88888888877766
No 462
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=28.95 E-value=2.9e+02 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.8
Q ss_pred ceeeeeecCCC------CeEEEEEeeCCCCeEEEEEccc---ceEEEEEEE
Q 001314 51 TVELLKWNCMS------DLLAAVVRFEEYDSVKICFFSN---NHWYLKYEI 92 (1102)
Q Consensus 51 ~v~~L~Wn~DS------~iLAv~~~~~~~~~vqLWt~~N---YHWYLKqei 92 (1102)
.|..++||+-| =+|||.+. ...|.||...+ -.|+.-.-+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs---~~~l~l~~~~~~~~~~W~~v~dv 134 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTS---NGRLSLYGPPGNPQGEWNRVADV 134 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcC---CCeEEEEecCCCccccEeeeeeh
Confidence 68999999943 47888862 56899999884 578755433
No 463
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.72 E-value=1.4e+03 Score=29.54 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=81.2
Q ss_pred eccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeee-ecCCCCeEEEEEeeCCCCeEEEEEcccce
Q 001314 7 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK-WNCMSDLLAAVVRFEEYDSVKICFFSNNH 85 (1102)
Q Consensus 7 WrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~-Wn~DS~iLAv~~~~~~~~~vqLWt~~NYH 85 (1102)
|-|.-+.+|.+. +...+..|+=.|.-- +-+|+..+ .|..|. |++ |++||-. .+...|.||-.+|..
T Consensus 332 lG~e~~~laVAT------Ns~~lr~y~~~~~~c--~ii~GH~e-~vlSL~~~~~-g~llat~---sKD~svilWr~~~~~ 398 (775)
T KOG0319|consen 332 LGPEESHLAVAT------NSPELRLYTLPTSYC--QIIPGHTE-AVLSLDVWSS-GDLLATG---SKDKSVILWRLNNNC 398 (775)
T ss_pred cCCccceEEEEe------CCCceEEEecCCCce--EEEeCchh-heeeeeeccc-CcEEEEe---cCCceEEEEEecCCc
Confidence 345556677765 456777775444433 35666444 578888 655 5777754 344589999885533
Q ss_pred EEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCC-CCCCCcccc--
Q 001314 86 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPMYL-- 162 (1102)
Q Consensus 86 WYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~-a~VPPPM~~-- 162 (1102)
-++.-+....+ |. +.+....+ .. ......|.|---.++++=++.. ..--||..+
T Consensus 399 ---~~~~~~a~~~g-----H~------------~svgava~--~~-~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 399 ---SKSLCVAQANG-----HT------------NSVGAVAG--SK-LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred ---chhhhhhhhcc-----cc------------cccceeee--cc-cCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 11111111111 00 01111111 00 0112233343344566666655 111123333
Q ss_pred --cccccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 163 --FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 163 --~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
-+..-+--||+|+++++.+ -||.-..|++.-+|.++
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndk--LiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDK--LIATGSQDKTAKIWDLE 493 (775)
T ss_pred hHHHHhhcccccceEecCCCc--eEEecccccceeeeccc
Confidence 2223366799999998754 56776788889999886
No 464
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.62 E-value=1.1e+02 Score=36.34 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=49.5
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccc-cceeeeeecCCCCeEEEEEeeCCCCeEEEEE
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQID-STVELLKWNCMSDLLAAVVRFEEYDSVKICF 80 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~-~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt 80 (1102)
...|.|.+.|+-. .+..|-+|+.+|=+- ||.|..+.. ..|..++||+-|.-|+-. ++...+-||+
T Consensus 394 vfSpd~~YvaAGS------~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~sG~~Llsa---dk~~~v~lW~ 459 (459)
T KOG0288|consen 394 VFSPDGSYVAAGS------ADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNPSGSGLLSA---DKQKAVTLWT 459 (459)
T ss_pred EECCCCceeeecc------CCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcCCCchhhcc---cCCcceEecC
Confidence 4579999998843 467999999998664 677776433 369999999999988754 5566788885
No 465
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=28.54 E-value=2.6e+02 Score=32.66 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=23.5
Q ss_pred HhcccChHHHHHHHHHcCCHHHHHHHHHHc
Q 001314 777 LSDVKCFEDAATTYFCCSSLEKAMKAYRAS 806 (1102)
Q Consensus 777 L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~a 806 (1102)
|....+.+|-+.-|-+-|.|++|++||.++
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ 123 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTA 123 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhh
Confidence 334445678888889999999999999873
No 466
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=28.34 E-value=95 Score=39.38 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 766 MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 766 ~~~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
.-.+-+.+|+-|.+-|.-.+|..+|++.+.++.-+.||...|+=..|-.+-++.-. ++....++..+++.+...--|+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHH
Confidence 34567789999999999999999999999999999999999987777655544322 22334688888888877666777
Q ss_pred HHHHHHHhcCCHHHHHHHH-----HHhcCHHHHHHHH
Q 001314 846 AAKIALDYCGDVTNGISLL-----IDARDWEEALRVA 877 (1102)
Q Consensus 846 Aa~i~l~ylgD~e~AI~~y-----~~~~~W~eA~rLa 877 (1102)
|-++. ++...-.++| ...++|++|.+.-
T Consensus 476 awEls----n~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 476 AWELS----NYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHh----hhhhHHHHHhhccccccchhHHHHHHHH
Confidence 76654 2222223333 3447777776543
No 467
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=28.23 E-value=75 Score=23.06 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=10.9
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 001314 787 ATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 787 a~~Y~~ag~~ekAl~~y~~ 805 (1102)
+.+|...|++++|+++|.+
T Consensus 8 g~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 8 GKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4455556666666666544
No 468
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=28.21 E-value=72 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=21.9
Q ss_pred chHHHHhcc-CCcHhHHHHHHHHHHHHhcccChHHHH
Q 001314 752 LFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAA 787 (1102)
Q Consensus 752 Ly~~AL~L~-~d~~~~~~i~~~yAd~L~~~~~~eeAa 787 (1102)
+|++|+++- .++ ..+..+|..|...|++++|.
T Consensus 1 ~y~kAie~~P~n~----~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNA----EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCH----HHHHHHHHHHHHCcCHHhhc
Confidence 477888875 443 34556788877777777774
No 469
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=28.14 E-value=79 Score=36.06 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=42.3
Q ss_pred chhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhH
Q 001314 482 PRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSA 529 (1102)
Q Consensus 482 PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i 529 (1102)
||.++...|.-+.+.++|.+=|...-+.-=+.+--.||.||..|++.|
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li 248 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLI 248 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHH
Confidence 577888889999999999999999988877779999999999887753
No 470
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=27.90 E-value=3.5e+02 Score=32.96 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=31.6
Q ss_pred HHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 001314 788 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 851 (1102)
Q Consensus 788 ~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~eAa~i~l 851 (1102)
..|...|+|++|+.+|.+ |+.+. -+..+.......+|..+...|++++|...+.
T Consensus 83 ~AL~~lGryeEAIa~f~r------ALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 83 LSLFSKGRVKDALAQFET------ALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred HHHHHcCCHHHHHHHHHH------HHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355666778888887764 44432 1111222345667777777777777776653
No 471
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=27.79 E-value=2.5e+02 Score=35.97 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=21.8
Q ss_pred hcCCcchhhHHHH-HHhcCChh----hhchhHHHhhhcHHHHHHHH
Q 001314 691 SQRDPKEFLPYLQ-ELESMPPL----LMRYTIDLRLQRFENALKHI 731 (1102)
Q Consensus 691 sqkDPkEYLpfL~-~L~~le~~----~rr~~Id~~LkryekAl~hl 731 (1102)
||+++++=+-.+. .|..-+.| -.+-+|.-++++-++|+...
T Consensus 525 a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~ 570 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTC 570 (799)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHH
Confidence 4566666554443 23333333 24456666777777766543
No 472
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.69 E-value=82 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=11.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 001314 786 AATTYFCCSSLEKAMKAYRA 805 (1102)
Q Consensus 786 Aa~~Y~~ag~~ekAl~~y~~ 805 (1102)
-+.+|...|++++|++++..
T Consensus 35 ~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 35 RARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 34455555666666665543
No 473
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=27.19 E-value=8.6e+02 Score=26.66 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred ceeeccCCCeEEEEeeccCCCC-CCeEEEEecCCcceeeeecCCcc-ccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 4 VLEWMPSGANIAAVYDRKSENK-CPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~-~~~VvFFERNGLrhgeF~L~~~~-~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
.++|.|.|..+++.. . +..|.+|.... +........ ...|..+.|++++. .+.........|.+|..
T Consensus 160 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 160 SLAFSPDGKLLASGS------SLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEECCCCCEEEecC------CCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEEC
Q ss_pred ccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEEEEeeeecCCcEEEEEeCCeEEeccCCCCCCCCccc
Q 001314 82 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 161 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~ 161 (1102)
++-..... .+....... .-.|++.. ..+..+..+|.+..++...... .+..++|.
T Consensus 229 ~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~----------------- 283 (466)
T COG2319 229 STGKLLRS-TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS-----LLRTLSGH----------------- 283 (466)
T ss_pred CCCcEEee-ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc-----EEEEEecC-----------------
Q ss_pred ccccccCCceeEEEEecCCCCceEEEEEeCCceEEE
Q 001314 162 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 197 (1102)
Q Consensus 162 ~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~ 197 (1102)
...+.+++|.+ ....+++...++.+.+|
T Consensus 284 ------~~~v~~~~~~~--~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 284 ------SSSVLSVAFSP--DGKLLASGSSDGTVRLW 311 (466)
T ss_pred ------CccEEEEEECC--CCCEEEEeeCCCcEEEE
No 474
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=27.02 E-value=1.3e+03 Score=28.78 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=56.4
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecC--CcceeeeecCCccccc---eeeeeecCCCCeEEEEEeeCCCCeEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDST---VELLKWNCMSDLLAAVVRFEEYDSVKI 78 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERN--GLrhgeF~L~~~~~~~---v~~L~Wn~DS~iLAv~~~~~~~~~vqL 78 (1102)
+|.|...|.|+|+-. ++..+++|+-- -|+|.= ....... |+-+=-..|.-||.- .....|.|
T Consensus 55 ~LeWn~dG~lL~SGS------DD~r~ivWd~~~~KllhsI---~TgHtaNIFsvKFvP~tnnriv~sg----AgDk~i~l 121 (758)
T KOG1310|consen 55 CLEWNADGELLASGS------DDTRLIVWDPFEYKLLHSI---STGHTANIFSVKFVPYTNNRIVLSG----AGDKLIKL 121 (758)
T ss_pred ceeecCCCCEEeecC------CcceEEeecchhcceeeee---ecccccceeEEeeeccCCCeEEEec----cCcceEEE
Confidence 699999999999954 46677776643 233321 1000111 333333333333321 22336888
Q ss_pred EEcccceEEEEEEEEeccCCC---ceEEe------------cCCCCceEEEEeeCCcEEEEEEE
Q 001314 79 CFFSNNHWYLKYEIRYLRRDG---IRFMW------------HPTKPLQLICWTLDGQITTYNFI 127 (1102)
Q Consensus 79 Wt~~NYHWYLKqei~~~~~~~---~~~~W------------~~e~pl~L~i~t~~g~~~~~~~~ 127 (1102)
++.+.-+ .-+..++ ...+| -|..|.++.....+|.+..|++.
T Consensus 122 fdl~~~~-------~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 122 FDLDSSK-------EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred Eeccccc-------ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 8776422 0011111 12334 35677777777788999999987
No 475
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.99 E-value=9.1e+02 Score=31.94 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=21.5
Q ss_pred cCHHHHHHHHHHhcCCcchhhHHHHHHhc
Q 001314 679 YDLNLAAIVALNSQRDPKEFLPYLQELES 707 (1102)
Q Consensus 679 YDl~Lal~VAq~sqkDPkEYLpfL~~L~~ 707 (1102)
+|=+.+.++++.+..|+++-+..|++|-.
T Consensus 199 id~eal~lLa~~sgGdlR~Al~eLEKLia 227 (824)
T PRK07764 199 VEPGVLPLVIRAGGGSVRDSLSVLDQLLA 227 (824)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 56666677888899999877777776653
No 476
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.99 E-value=1.1e+03 Score=27.84 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred EeeeecCCcEEEEEeCCeEEeccCCCCCCCCcccccccccCCce-eEEEEecCCCCceEEEEEeCCceEEEecCCCCccc
Q 001314 128 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV-TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE 206 (1102)
Q Consensus 128 w~~~~~d~~~vaVIDG~~l~lTp~r~a~VPPPM~~~~l~~~~~i-~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~~~~~~ 206 (1102)
+-+...+.+.|+|||+.+..+. .++.....+ ..++|++++. .+.+.-.++.+.++.+.......
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~-------------~~i~~~~~~h~~~~~s~Dgr--~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVV-------------ARIPTGGAPHAGLKFSPDGR--YLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEE-------------EEEE-STTEEEEEE-TT-SS--EEEEEETTSEEEEEETTSSSEEE
T ss_pred EEEEecCCCEEEEEECCCCeEE-------------EEEcCCCCceeEEEecCCCC--EEEEEcCCCeEEEEECCcccEEE
Q ss_pred cccCCceeeeeeccccccCceEEEEEecCceEEEEEecCCCCccceeecccccCcccccchhhhhhcccccccccccccc
Q 001314 207 DLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCA 286 (1102)
Q Consensus 207 ~l~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (1102)
.+....- .+.+....++..+.+..+.+..-..++
T Consensus 73 ~i~~G~~-------------~~~i~~s~DG~~~~v~n~~~~~v~v~D--------------------------------- 106 (369)
T PF02239_consen 73 TIKVGGN-------------PRGIAVSPDGKYVYVANYEPGTVSVID--------------------------------- 106 (369)
T ss_dssp EEE-SSE-------------EEEEEE--TTTEEEEEEEETTEEEEEE---------------------------------
T ss_pred EEecCCC-------------cceEEEcCCCCEEEEEecCCCceeEec---------------------------------
Q ss_pred cccceeeeeeccCC--------cEEEEccCCCCCceEEEEeeCceEEEEecccccCCCCccCCCCCCCCCCCceEEEEec
Q 001314 287 GWHAKVSTQIPLEG--------LVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVG 358 (1102)
Q Consensus 287 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~~~~~~~f~~~c~~~~~~~~~ 358 (1102)
.........++..+ ++.+|..++....-++-....|+|.. +.+..+ .-.....+.
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v----------------Vdy~d~-~~~~~~~i~ 169 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV----------------VDYSDP-KNLKVTTIK 169 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE----------------EETTTS-SCEEEEEEE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE----------------EEeccc-cccceeeec
Q ss_pred CCCCCcceEEEEcCCcceEe
Q 001314 359 TNGPLKPLLFGLDDGGRLHV 378 (1102)
Q Consensus 359 ~~~~~~~~~~gLs~~g~L~~ 378 (1102)
... ...=+|++..||.|+
T Consensus 170 ~g~--~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 170 VGR--FPHDGGFDPDGRYFL 187 (369)
T ss_dssp --T--TEEEEEE-TTSSEEE
T ss_pred ccc--cccccccCcccceee
No 477
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.48 E-value=1.3e+03 Score=28.41 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=36.9
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEc--ccceEEEEEEEEeccCCCc-eEEecCCCCceEEEEeeCC
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFF--SNNHWYLKYEIRYLRRDGI-RFMWHPTKPLQLICWTLDG 119 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~--~NYHWYLKqei~~~~~~~~-~~~W~~e~pl~L~i~t~~g 119 (1102)
.|..+.=++||.-+++. .++.+||+. .|-. -++|.-+...-+ -|.|||..-. ++..-..|
T Consensus 403 ~I~av~vs~dGK~~vva-----Ndr~el~vididngn---v~~idkS~~~lItdf~~~~nsr~-iAYafP~g 465 (668)
T COG4946 403 NIEAVKVSPDGKKVVVA-----NDRFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNSRW-IAYAFPEG 465 (668)
T ss_pred ceEEEEEcCCCcEEEEE-----cCceEEEEEEecCCC---eeEecccccceeEEEEEcCCcee-EEEecCcc
Confidence 37788889998877765 578899863 3333 344432221223 4999997655 55544444
No 478
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=26.48 E-value=79 Score=32.49 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCCceEEEEeeCceEEEEe
Q 001314 299 EGLVIAIAPNNAKKYSAFLQFHGGKISEYM 328 (1102)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 328 (1102)
.+.+++++.++. ..-|+-..+-.||++.
T Consensus 74 ~~~~~gl~~D~~--~~t~W~ys~~~I~ei~ 101 (147)
T PF05131_consen 74 GGKILGLCRDPS--SNTFWLYSSNSIFEIV 101 (147)
T ss_pred CcceeeEEEcCC--CCeEEEEeCCeeEEEE
Confidence 355667766652 2334444455777764
No 479
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.36 E-value=3.1e+02 Score=34.10 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred cchHHHHhcc-----CCcHhHHHHHHHHHHHHhcccChHHHHHHHHHc
Q 001314 751 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 793 (1102)
Q Consensus 751 ~Ly~~AL~L~-----~d~~~~~~i~~~yAd~L~~~~~~eeAa~~Y~~a 793 (1102)
+-|++|+.-| -.|..+ .+|.++|--|....+.++|...|.+|
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~-~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDY-LLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchH-HHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 4555555554 234333 58999999999999999999999887
No 480
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=26.21 E-value=6.8e+02 Score=31.11 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=28.0
Q ss_pred HHHHHHhc--CC-hhhhchhHHH--hhhcHHHHHHHHHHcCC
Q 001314 700 PYLQELES--MP-PLLMRYTIDL--RLQRFENALKHIVSMGD 736 (1102)
Q Consensus 700 pfL~~L~~--le-~~~rr~~Id~--~LkryekAl~hl~~~g~ 736 (1102)
||+++|.+ |+ +..+.|.+.| ||..|.++.......-+
T Consensus 339 pFv~~L~~GtL~~~~F~~Yl~QD~~yL~~~~r~~a~~~aka~ 380 (530)
T PRK14713 339 PFVRALADGTLPEEAFEFYLAQDALYLNGYSRALARLAALAP 380 (530)
T ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 79998885 65 4578888877 78899998877775443
No 481
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.99 E-value=1.6e+02 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=11.6
Q ss_pred CCcHhHHHHHHHHHHHH
Q 001314 761 TDPAKMEQVLEAWADHL 777 (1102)
Q Consensus 761 ~d~~~~~~i~~~yAd~L 777 (1102)
.+|.....+-..+.+|+
T Consensus 44 ~~~~~k~~lr~k~~eyl 60 (75)
T cd02684 44 TDAQRKEALRQKVLQYV 60 (75)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46666666777777777
No 482
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.94 E-value=1.6e+03 Score=29.33 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred hhchhHHHhhhcHHHHHHHHHHcCCC--cHHHHHHHHHHHhcchHHHHhccCCcHhHHHHHHHHHHHHhcccChHHHHHH
Q 001314 712 LMRYTIDLRLQRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATT 789 (1102)
Q Consensus 712 ~rr~~Id~~LkryekAl~hl~~~g~~--~~deAie~~~~~~~Ly~~AL~L~~d~~~~~~i~~~yAd~L~~~~~~eeAa~~ 789 (1102)
.|.+-|-.|.-.-|.|++++..+-+. .|+.-+.++.-. .-|+.++ ..|.+.....+..=..|.+. .-+..
T Consensus 189 kRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE-~Irkv~~---~~p~~~~~~i~~i~~lL~st----ssaV~ 260 (948)
T KOG1058|consen 189 KRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVE-LIRKVCL---ANPAEKARYIRCIYNLLSST----SSAVI 260 (948)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHH-HHHHHHh---cCHHHhhHHHHHHHHHHhcC----Cchhh
Confidence 56666777777889999988876321 144545554332 3333333 23444444444444444443 22334
Q ss_pred HHHcCC----------HHHHHHHHHHcC----------------------C---HHH-HHHHHhhcCCChHHHHHHHHHH
Q 001314 790 YFCCSS----------LEKAMKAYRASG----------------------N---WSG-VLTVAGLLKLGKDEVAKLAQEL 833 (1102)
Q Consensus 790 Y~~ag~----------~ekAl~~y~~ag----------------------~---W~~-al~lA~~l~~~~~el~~l~~~l 833 (1102)
|+.||- ...|..+|+.+- + .++ ++.+.+-++-+.=+++.=+-++
T Consensus 261 fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 261 FEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred hhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 444432 223333333221 0 111 1222233322212344445556
Q ss_pred HHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHH---HhcCChhhHHHHHHhHH--------HHHHHHHH
Q 001314 834 CEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVA---FMHRREDLITKVKHASL--------ECASSLIG 902 (1102)
Q Consensus 834 A~~L~~~g~~~eAa~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa---~~h~~~dL~etv~~a~l--------~~a~~~~~ 902 (1102)
+-.|.+.+...+-...+..-+.+-..+ -..++++|.+++--+ -.-+.|+.-.++++-++ +.|...+.
T Consensus 341 ~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~ 418 (948)
T KOG1058|consen 341 ALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLM 418 (948)
T ss_pred HHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 666667777776665543322111111 244555666554211 11245666666666655 34444444
Q ss_pred HHHHHHHHHH
Q 001314 903 EYKEGLEKVG 912 (1102)
Q Consensus 903 el~e~~~~~~ 912 (1102)
-+.++.+.+-
T Consensus 419 FvrE~iek~p 428 (948)
T KOG1058|consen 419 FVREAIEKFP 428 (948)
T ss_pred HHHHHHHhCc
Confidence 4555555544
No 483
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=25.83 E-value=1.2e+02 Score=36.75 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=45.0
Q ss_pred eeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEE
Q 001314 6 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 68 (1102)
Q Consensus 6 sWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~ 68 (1102)
+|.|.|..|+=+..+. .+.+|..+.++|-.-...+.-.... ..-.||+||+.+++.-
T Consensus 288 s~spdG~~ivf~Sdr~---G~p~I~~~~~~g~~~~riT~~~~~~---~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 288 SWSPDGSKIVFTSDRG---GRPQIYLYDLEGSQVTRLTFSGGGN---SNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCCCEEEEEeCCC---CCcceEEECCCCCceeEeeccCCCC---cCccCCCCCCEEEEEe
Confidence 7999999999887663 4789999999998776665553222 2677999999999975
No 484
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=25.76 E-value=2.2e+02 Score=32.50 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=41.4
Q ss_pred ceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccceEEEE--EEEEeccCCC-----ceEEecCCCC-ceEEEEeeCCcEE
Q 001314 51 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK--YEIRYLRRDG-----IRFMWHPTKP-LQLICWTLDGQIT 122 (1102)
Q Consensus 51 ~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLK--qei~~~~~~~-----~~~~W~~e~p-l~L~i~t~~g~~~ 122 (1102)
+|.-+.|-++|+-||-.. ...|+||.+-|-. | +|+..+.+.. .+=+|+|-.. .++.. |+++++.
T Consensus 125 ~i~cvew~Pns~klasm~----dn~i~l~~l~ess---~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~ 196 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----DNNIVLWSLDESS---KIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQ 196 (370)
T ss_pred ceeeEEEcCCCCeeEEec----cCceEEEEcccCc---chheeecccccccccceecccccCCCCccceEEE-eCCCcEE
Confidence 478899999999999876 5679999998877 4 4554443322 1236766333 33333 4455554
Q ss_pred E
Q 001314 123 T 123 (1102)
Q Consensus 123 ~ 123 (1102)
.
T Consensus 197 ~ 197 (370)
T KOG1007|consen 197 F 197 (370)
T ss_pred E
Confidence 3
No 485
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=25.66 E-value=1e+02 Score=22.30 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCC
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSS 795 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~ 795 (1102)
.++...|..+...+++++|..+|.++-.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567789999999999999999987643
No 486
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.65 E-value=1.7e+02 Score=34.31 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=23.8
Q ss_pred cccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 159 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 159 PM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
|.+..+...| +|.+|.|++- +.+.++..-+|++|.||.+-
T Consensus 179 Pv~smswG~D-ti~svkfNpv-ETsILas~~sDrsIvLyD~R 218 (433)
T KOG0268|consen 179 PVSSMSWGAD-SISSVKFNPV-ETSILASCASDRSIVLYDLR 218 (433)
T ss_pred ccceeecCCC-ceeEEecCCC-cchheeeeccCCceEEEecc
Confidence 5555555554 3556666653 33445555588888888763
No 487
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=25.47 E-value=1.1e+02 Score=28.86 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHcCC---HHHHHHHHHHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCChHH
Q 001314 769 VLEAWADHLSDVKCFEDAATTYFCCSS---LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGE 845 (1102)
Q Consensus 769 i~~~yAd~L~~~~~~eeAa~~Y~~ag~---~ekAl~~y~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~~~e 845 (1102)
|....|+-|+++|.|..|+.-+..+-. .++.-+.+.. .=..|+.-+.+.+...+++.+|....-..+...|-+..
T Consensus 2 i~d~~Ae~LE~kGl~RRAA~rW~evm~~~~~~~eRe~~~~--RR~~Cl~kakR~p~~~~~f~~l~~Aa~~T~~~MGi~~~ 79 (90)
T PF06069_consen 2 IHDKKAEELEAKGLWRRAATRWLEVMDLAETDKEREWIAQ--RREYCLRKAKRPPEPPDNFGDLRKAADRTQKRMGIDQP 79 (90)
T ss_pred cchHHHHHHHHcccHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHhcccCCCChhHHHHHHHHHHHHHHHcCCCCC
Confidence 345678889999999888877665411 1111111111 12345555555556666666666666666667777666
Q ss_pred HHHHHHH
Q 001314 846 AAKIALD 852 (1102)
Q Consensus 846 Aa~i~l~ 852 (1102)
...+|-.
T Consensus 80 ~~~~fR~ 86 (90)
T PF06069_consen 80 NGEIFRN 86 (90)
T ss_pred ccHHHhc
Confidence 6666543
No 488
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.98 E-value=1.3e+03 Score=28.06 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=104.6
Q ss_pred eeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEcccc
Q 001314 5 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 84 (1102)
Q Consensus 5 LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~~NY 84 (1102)
++=.|.|.+||+..+ ++.|.+|+=--+.|-.- +++..+ .|.+|+.=...+=|=... ..-.|.+|...-.
T Consensus 208 ~avS~Dgkylatgg~------d~~v~Iw~~~t~ehv~~-~~ghr~-~V~~L~fr~gt~~lys~s---~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGR------DRHVQIWDCDTLEHVKV-FKGHRG-AVSSLAFRKGTSELYSAS---ADRSVKVWSIDQL 276 (479)
T ss_pred EEEcCCCcEEEecCC------CceEEEecCcccchhhc-cccccc-ceeeeeeecCccceeeee---cCCceEEEehhHh
Confidence 455688999998653 46777888776666542 333222 466666655444443332 1236888876543
Q ss_pred eE----EEEEEEEec-------------cCCCceEEecCCCCceEEEEeeCCcEEEEEEEEee---eecCCcEEEEEe--
Q 001314 85 HW----YLKYEIRYL-------------RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT---AVMENSTALVID-- 142 (1102)
Q Consensus 85 HW----YLKqei~~~-------------~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~---~~~d~~~vaVID-- 142 (1102)
-. |=-|-..++ .+|.....|.-..-.+|+.-...|.+.+..|.-+. .++|+|.++.-+
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeec
Confidence 21 001221111 12333346865555567665556788888776433 367999998765
Q ss_pred -CCeEEeccCCCCCCCCcccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecCC
Q 001314 143 -GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 201 (1102)
Q Consensus 143 -G~~l~lTp~r~a~VPPPM~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~~ 201 (1102)
=+-|.+++....+.|-| ..+.-+.=|+.||..+.. +.+|.=..+|++-||...+
T Consensus 357 KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~s--dL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGS--DLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ccCceeEeeccccccCCc---cccccccceeeeEecccC--ceEEecCCCCceEEEEecC
Confidence 33455667777776665 223333457788876643 3444445678899998754
No 489
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.89 E-value=6.1e+02 Score=30.70 Aligned_cols=100 Identities=10% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCccccceeeeeecCCCCeEEEEEeeCCCCeEEEEEc
Q 001314 2 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 81 (1102)
Q Consensus 2 e~~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~Wn~DS~iLAv~~~~~~~~~vqLWt~ 81 (1102)
+...+|.|.|+.||-+..+. ...+|-.+.=.|-..-. |-. .......=.|++||+-++..........|.+...
T Consensus 240 ~~~P~fspDG~~l~f~~~rd---g~~~iy~~dl~~~~~~~--Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRD---GSPDIYLMDLDGKNLPR--LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred cCCccCCCCCCEEEEEECCC---CCccEEEEcCCCCccee--ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 45678999999998876542 35666666544443111 211 1112336789999999999864333444555554
Q ss_pred ccceEEEEEEEEeccCCCceEEecCCCCc
Q 001314 82 SNNHWYLKYEIRYLRRDGIRFMWHPTKPL 110 (1102)
Q Consensus 82 ~NYHWYLKqei~~~~~~~~~~~W~~e~pl 110 (1102)
..-- ++.+.+......+-.|+|....
T Consensus 314 ~g~~---~~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 314 EGSQ---VTRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred CCCc---eeEeeccCCCCcCccCCCCCCE
Confidence 4433 3344333322234578887766
No 490
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=24.89 E-value=1.3e+03 Score=27.78 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=43.1
Q ss_pred eecCCCCeEEEEEeeC-------CCC-eEEEEEcccceEEEEEEEEeccCCCceEEecCCCCceEEEEeeCCcEEEEEE
Q 001314 56 KWNCMSDLLAAVVRFE-------EYD-SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF 126 (1102)
Q Consensus 56 ~Wn~DS~iLAv~~~~~-------~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~W~~e~pl~L~i~t~~g~~~~~~~ 126 (1102)
+=.+.|-.+|+..... ... .|++|+.+-.- -..|......-+.+.|..+. .|++++.+|.+.+|++
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l---l~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL---LSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE---eEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeC
Confidence 4456677777775320 111 58888876653 45566665322678997753 4667789999999987
No 491
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=8.1e+02 Score=31.71 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=80.6
Q ss_pred hHHHhhhcHHHHHHHHHHcCCC--------c----HHHHHHHHHHHhcchHHHHhccC--C-----cHhHHHHHH-HHHH
Q 001314 716 TIDLRLQRFENALKHIVSMGDS--------Y----HADCLNLMKKYAQLFPLGLKLIT--D-----PAKMEQVLE-AWAD 775 (1102)
Q Consensus 716 ~Id~~LkryekAl~hl~~~g~~--------~----~deAie~~~~~~~Ly~~AL~L~~--d-----~~~~~~i~~-~yAd 775 (1102)
+|.=|||.|++|+..-..+|+. + .-+||+++.. +|.+.|. . +++++.+.+ .++.
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~------~~~~~~~~~~~~~~iD~rL~~iv~rmi~k 140 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIE------TASETYKNPEQKSPIDQRLRDIVERMIQK 140 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHH------HHHHHhcCccccCCCCHHHHHHHHHHHHH
Confidence 3455899999999999999852 1 2455555543 3445552 2 345565544 4444
Q ss_pred HHhcccChHHHHHHHHHcCC---HHHHHHHH-HHcCCHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCC--hHHHHHH
Q 001314 776 HLSDVKCFEDAATTYFCCSS---LEKAMKAY-RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGK--PGEAAKI 849 (1102)
Q Consensus 776 ~L~~~~~~eeAa~~Y~~ag~---~ekAl~~y-~~ag~W~~al~lA~~l~~~~~el~~l~~~lA~~L~~~g~--~~eAa~i 849 (1102)
-| +.++|..|.-+-..+.. +++|+--+ ...|+-.-++.++..+..+.+-..++.+.+...+..... |-.-.++
T Consensus 141 cl-~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c 219 (929)
T KOG2062|consen 141 CL-DDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQC 219 (929)
T ss_pred hh-hhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeee
Confidence 44 55677777555444433 33332111 122334455666655543333334455555555544433 3444555
Q ss_pred HHHhcCCHHHHHHHHHHhcC
Q 001314 850 ALDYCGDVTNGISLLIDARD 869 (1102)
Q Consensus 850 ~l~ylgD~e~AI~~y~~~~~ 869 (1102)
|. |++|++.|.+++-+.-.
T Consensus 220 ~v-~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 220 YV-FLDDAEAVADLLEKLVK 238 (929)
T ss_pred eE-EcCCHHHHHHHHHHHHh
Confidence 53 58898888888876655
No 492
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=24.55 E-value=2.1e+02 Score=30.27 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=51.9
Q ss_pred cEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhcccccceeeccccHHHHHhhHHHHHHHc-CCcc
Q 001314 466 AAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQV-NNLS 540 (1102)
Q Consensus 466 ~~vVLQmPRGNLEtI~PR~LVL~~ir~~L~~~~Y~~Af~~~RkhRIdlNll~D~~~p~~Fl~~i~~FV~qv-~~~~ 540 (1102)
-.+..++|||+-..++|= +-..=.+.+.......|..-+|+....-+||+=|-||.. ..|+++| .++-
T Consensus 22 ~~~~y~~~~~~~~~~~~~--~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe-----~Lflkdv~P~a~ 90 (171)
T PF12000_consen 22 RVVRYRPPRGPTPGTHPY--VRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGE-----TLFLKDVFPDAP 90 (171)
T ss_pred EEEEeCCCCCCCCCCCcc--cccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcch-----hhhHHHhCCCCc
Confidence 345567789999999993 333344666777788889999999988899999999876 7788876 3543
No 493
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=24.46 E-value=5.2e+02 Score=30.54 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=35.1
Q ss_pred ceeeccCCCeEEEEeeccCCCCCCeEEEEecCCcceeeeecCCc-cccceeeeeecCCCCeEEEE
Q 001314 4 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAV 67 (1102)
Q Consensus 4 ~LsWrPsGnlIA~~qr~~~~~~~~~VvFFERNGLrhgeF~L~~~-~~~~v~~L~Wn~DS~iLAv~ 67 (1102)
.+++.|.|+++|-+-... +.+...|.+|+=..- ++. +.. ....-..+.|..||+.|--.
T Consensus 128 ~~~~Spdg~~la~~~s~~-G~e~~~l~v~Dl~tg---~~l-~d~i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDG-GSEWYTLRVFDLETG---KFL-PDGIENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEETTTSSEEEEEEEET-TSSEEEEEEEETTTT---EEE-EEEEEEEESEEEEECTTSSEEEEE
T ss_pred eeeECCCCCEEEEEecCC-CCceEEEEEEECCCC---cCc-CCcccccccceEEEeCCCCEEEEE
Confidence 467889999999876654 334566777765332 221 110 01122349999998876544
No 494
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=24.39 E-value=1.2e+02 Score=26.38 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.4
Q ss_pred cccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh
Q 001314 779 DVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL 818 (1102)
Q Consensus 779 ~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~ 818 (1102)
...+|+.|+.-=.+.|+.++|-+..+.+..++.++..++.
T Consensus 7 R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~a 46 (59)
T smart00685 7 RQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAARA 46 (59)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHHC
Confidence 3458899999999999999999999999999999887754
No 495
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=24.33 E-value=63 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=11.3
Q ss_pred HHHHHHHHhcccChHHHHHHHHH
Q 001314 770 LEAWADHLSDVKCFEDAATTYFC 792 (1102)
Q Consensus 770 ~~~yAd~L~~~~~~eeAa~~Y~~ 792 (1102)
+...|..+...++|++|..+|.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHH
Confidence 34455555555555555555444
No 496
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.62 E-value=1e+03 Score=26.30 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHcCChHHH
Q 001314 768 QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEA 846 (1102)
Q Consensus 768 ~i~~~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~-l~~~~~el~~l~~~lA~~L~~~g~~~eA 846 (1102)
-.++.-|||+.-.-++... ..+-.-.++|.++|. +|+.+|.. ++... .+.-.++-. .
T Consensus 117 fy~KmkgDyyRYlaE~~~~---~~~~~~~~~a~~aY~------~A~~~a~~~L~~~~----p~rLgl~LN---------~ 174 (236)
T PF00244_consen 117 FYYKMKGDYYRYLAEFDSG---DEKKEAAEKALEAYE------EALEIAKKELPPTH----PLRLGLALN---------Y 174 (236)
T ss_dssp HHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHH------HHHHHHHHHSCTTS----HHHHHHHHH---------H
T ss_pred HHHHHhccccccccccccc---hhhHHHHHHHHHhhh------hHHHHHhcccCCCC----cHHHHHHHH---------H
Confidence 3455567776443222211 111112456777765 48888887 44322 222222211 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 001314 847 AKIALDYCGDVTNGISLLIDARDWEEALRVAF 878 (1102)
Q Consensus 847 a~i~l~ylgD~e~AI~~y~~~~~W~eA~rLa~ 878 (1102)
+-.|.+.+|++++|+++..++ |++|+.-..
T Consensus 175 svF~yei~~~~~~A~~ia~~a--fd~a~~~l~ 204 (236)
T PF00244_consen 175 SVFYYEILNDPEKAIEIAKQA--FDEAISELD 204 (236)
T ss_dssp HHHHHHTSS-HHHHHHHHHHH--HHHHHHGGG
T ss_pred HHHHHHHcCChHHHHHHHHHH--HHHHHhhhc
Confidence 233446789999999999887 788875433
No 497
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=23.33 E-value=2.5e+02 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=26.3
Q ss_pred HHHHHHHhcccChHHHHHHHHHc-------CCHHHHHHHHHHcCCHHHHHHHH
Q 001314 771 EAWADHLSDVKCFEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVA 816 (1102)
Q Consensus 771 ~~yAd~L~~~~~~eeAa~~Y~~a-------g~~ekAl~~y~~ag~W~~al~lA 816 (1102)
...|.++ -+++|++|..+|... ++.+.|.+.+..-|+|++++..+
T Consensus 154 h~iG~~l-l~gd~~~Av~~il~~~~~~~~~~~~~~ar~~~~~~gd~~~~l~~~ 205 (319)
T cd02577 154 HFVGKLI-LEGDYEEAAKTYLTARYPLEETGDKKRALRLFPKWGDWERCLKEY 205 (319)
T ss_pred HHHHHHH-HccCHHHHHHHHhcCCcccccchHHHHHHHHHHhcCCHHHHHHHh
Confidence 3344444 345666666555532 33456666677778888887754
No 498
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=23.32 E-value=8.9e+02 Score=31.62 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred hHHHHHHhc--CC-hhhhchhHHH--hhhcHHHHHHHHHHcCC
Q 001314 699 LPYLQELES--MP-PLLMRYTIDL--RLQRFENALKHIVSMGD 736 (1102)
Q Consensus 699 LpfL~~L~~--le-~~~rr~~Id~--~LkryekAl~hl~~~g~ 736 (1102)
=||+++|.+ || +..+.|.+.| ||+.|-+|.......-+
T Consensus 564 HPFv~~L~~GtL~~e~F~~YL~QD~~YL~~yar~~a~~~aka~ 606 (755)
T PRK09517 564 SDFIRMLGDGTLRRPEFDFYIDQDAQYLRQYSRALARLSSIAP 606 (755)
T ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 389999986 65 5678888877 78889998877775443
No 499
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.29 E-value=1.4e+03 Score=30.82 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=92.6
Q ss_pred CCeEEEEecCCcceeeeecCCccccceeeeee-cCCCCeEEEEEeeCCCCeEEEEEcccceEEEEEEEEeccC---C---
Q 001314 26 CPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR---D--- 98 (1102)
Q Consensus 26 ~~~VvFFERNGLrhgeF~L~~~~~~~v~~L~W-n~DS~iLAv~~~~~~~~~vqLWt~~NYHWYLKqei~~~~~---~--- 98 (1102)
+..|-=||+|-+ -..|+.-.+....|..|.- |.+.+-|-+... ....|.+|.----.| =|+|+...-. +
T Consensus 1087 ~i~vwd~e~~~~-l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas--~dGvIRIwk~y~~~~-~~~eLVTaw~~Ls~~~~ 1162 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRL-LNGFDNGAFPDTRVSDLELINEQDDALLLTAS--SDGVIRIWKDYADKW-KKPELVTAWSSLSDQLP 1162 (1387)
T ss_pred eEEEEecccCce-eccccCCCCCCCccceeeeecccchhheeeec--cCceEEEeccccccc-CCceeEEeeccccccCc
Confidence 444555677765 3345555444556777665 555555554442 234899995444445 5788875421 1
Q ss_pred -----CceEEecCCCCceEEEEeeCCcEEEEEEEEeee----------e--------c---CC-cEEEE--EeCCeEEec
Q 001314 99 -----GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----------V--------M---EN-STALV--IDGSKILVT 149 (1102)
Q Consensus 99 -----~~~~~W~~e~pl~L~i~t~~g~~~~~~~~w~~~----------~--------~---d~-~~vaV--IDG~~l~lT 149 (1102)
+.-+.|-.+... |++ +|...... .|+.. . + +. +++++ -||+ |.+-
T Consensus 1163 ~~r~~~~v~dWqQ~~G~-Ll~---tGd~r~IR-IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs-vRvy 1236 (1387)
T KOG1517|consen 1163 GARGTGLVVDWQQQSGH-LLV---TGDVRSIR-IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS-VRVY 1236 (1387)
T ss_pred cCCCCCeeeehhhhCCe-EEe---cCCeeEEE-EEecccceeEeecccCCCccceeecccccCCceEEEeecCCc-eEEe
Confidence 133799888877 665 23322222 35543 0 0 22 33333 6776 7888
Q ss_pred cCCCCCCCCc----ccccccccCCceeEEEEecCCCCceEEEEEeCCceEEEecC
Q 001314 150 PLSLSLMPPP----MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 200 (1102)
Q Consensus 150 p~r~a~VPPP----M~~~~l~~~~~i~~vaf~~~~~~~~~a~vl~~~~l~l~~~~ 200 (1102)
.-|. ||| +..++-.-..+|+.+.|.+.+-. .+.....+|.+.++.+-
T Consensus 1237 D~R~---a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1237 DRRM---APPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred eccc---CCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecc
Confidence 7777 555 22333333445999999886544 45555889999999874
No 500
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=23.04 E-value=4.9e+02 Score=29.36 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCChhhhchhHHHhhhc-----HHHHHHHHHHcCCCcHHHHHHHHHHHhcchHHHHhcc-CCcHhHHHHHH
Q 001314 698 FLPYLQELESMPPLLMRYTIDLRLQR-----FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 771 (1102)
Q Consensus 698 YLpfL~~L~~le~~~rr~~Id~~Lkr-----yekAl~hl~~~g~~~~deAie~~~~~~~Ly~~AL~L~-~d~~~~~~i~~ 771 (1102)
|+-|+++.+.++..+.-|.-..--++ |..+..+=..++.+ .+.|. +.|+.|++.| .++ .++.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d-~~~A~-------~Ife~glk~f~~~~----~~~~ 74 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD-PKRAR-------KIFERGLKKFPSDP----DFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--HHHHH-------HHHHHHHHHHTT-H----HHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC-HHHHH-------HHHHHHHHHCCCCH----HHHH
Q ss_pred HHHHHHhcccChHHHHHHHHHcCCHHHHHHHHHHcCCHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHcCChHHHHHHH
Q 001314 772 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE-VAKLAQELCEELQALGKPGEAAKIA 850 (1102)
Q Consensus 772 ~yAd~L~~~~~~eeAa~~Y~~ag~~ekAl~~y~~ag~W~~al~lA~~l~~~~~e-l~~l~~~lA~~L~~~g~~~eAa~i~ 850 (1102)
.|.+||...++.+.|-.+|+++=.. ++.+. .+.+.....+.=...|+......++
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~------------------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISS------------------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCT------------------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh------------------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred HHhc
Q 001314 851 LDYC 854 (1102)
Q Consensus 851 l~yl 854 (1102)
-++.
T Consensus 131 ~R~~ 134 (280)
T PF05843_consen 131 KRAE 134 (280)
T ss_dssp HHHH
T ss_pred HHHH
Done!