Citrus Sinensis ID: 001315

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100--
Protein Sequence
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHcccccHHHHccccEEEEcccEEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEcccEEEEEcccccccccEEEEccEEEEcccEEEEEEEEccccccccEEEEEEccccccccccccccccccccccEEEEEEEcccccccccccEEEEEcccccccccEEEccHHHHHHHHHHHHHHccccccHHHHHccHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHcccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHccccccccccccccccHcccccccccccccHHcccccccccccccccccccEEcccccccccHHccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccHHHHHccccEEEEcccHHHHHHHccHcccHHHHcccccHHHHHHHcHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHcccccHccccEEEEEEccEEEEEEccEEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEcccEEEccccccccccccccccccEEEEEccccccccccEEEEEEcccccccccEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHEccccccccccEEEcccccccccccccHEEEEcccccHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEccccccccc
Coil and Loop (DISEMBL)
meevgaqvapsILMHQRLssrlceaptmTMTMTMAKKRHLSYQAqsqnhyggeqqnwnpklwdwdsvgfvgkpvvdsdpevlrlggatasespnkttdninynynynnqkkgnttttsavtvgnveddgrldlnlgggltavdveqpeppvvtskpnkrvrsgspgtapypmcqvdnckedlsnakdyhrrhkvceLHSKSTKALVGKQMQRFCqqcsrfhplsefdegkRSCRRRLaghnrrrrktqpeditsrmlihghgnqsnnptanVDIVNLLTALARAQgktedrsiscssvpDREQLLMILSKinslplpadLAAKLhnfgslnrktpvhtstdvqnrlnentsspsTMDLLAVLSStltapspdtlaahsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqetrvnlplqlfssspeddsppklsssrkyfssdssnpieerspssspvvqtffpmqstsetvkseklsigrevnanvegnrsrgsimplelfrgsnkaadncsfqsfpyqagytsssgsdhspsslnsdaqdcTGRIIFKLfdkdpsqfpgtLRKEIYNWLsnspsemesyirpgcvilslyvsmpyatWEQLEGNLLQRINSLvqdsdsdfwRNARFLVHtgkqlashkdgnirvckswrtwsspelisvsplavvggqelsfklrgrnltnlgtkihctfmggyasqevtsstcqgsiYDEIILAGlkiqdtspsvlGRFFIEvengfkgnsfpvIIADATICKELSLLESEFGAEAKVCDVIsehqaheygrprsrEEVLHFLNELGWLFQrkrassivkgsdyslsrFKFLLVFSVDRGCCALVKAILDILVEGnlsmdglsRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYsltssndtpqkyifppnlagpggitplhlaactsdsdDIIDAltndpqeigpsswnsildasghspysyaLMKNNHAYNKLVARKLadrrngqvtipVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNkrvrgsqgllnrpyiHSMLAIAAVCVCVCLFlrgspdiglvapfkwenldfgpk
Flexible Loop (DISEMBL)
meevgaqvapsilmhqrlsSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLggatasespnkttdnINYNYNynnqkkgntTTTSAVTVGNVEDDGRLDLNLGGGLtavdveqpeppvvtskpnkrvrsgspgtapypmcQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRfhplsefdegkrscrrrlaghnrrrrktqpeditSRMLIhghgnqsnnptANVDIVNLLTALARAqgktedrsiscssvPDREQLLMILSKINSLPLPADLAAKLHNFGSlnrktpvhtstdvqnrlnentsspsTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqETRVNLPLQlfssspeddsppklSSSRKYFSsdssnpieerspssspvvQTFFPMQstsetvkseklsigrevnanvegnrsrgsiMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLfdkdpsqfpgTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVhtgkqlashkdgnirVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAheygrprsREEVLHFLNELGWLFQRKRASsivkgsdyslSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSsqfkqrgkSCTKCAVAAAklnkrvrgsqgLLNRPYIHSMLAIAAVCVCVCLFLRGSpdiglvapfkwenldfgpk
Low Complexity Region (SEG)
MEEVGAQVAPSILMHQRLSSRLCEAPtmtmtmtmAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPnkttdninynynynnqkkgnttttSAVTVGNVEddgrldlnlggglTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCrrrlaghnrrrrKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLsssrkyfssdssNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTsssgsdhspsslnsDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Disordered region (IsUnstruct)
*****************************************************QQNWNPKLWDWDSVGFVGKPVVDS**********************INYNYNY*************VTVGNVE**GRLDLNLGGGLT************************************************HRRHKVCELH****KALVGKQMQRFCQQCSRFH*************************************************NVDIVNLLTALAR*******************QLLMILSKINSLPLPADLAAKLHNF***********************************************************************************************************************************************************************************************************************************************CTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR**SREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT**********WNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQS******************KSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD****
Disordered Region (DISOPRED)
*****AQVAPSILMHQRLSSRL*************************************KLWDWDSVGFV****************************************************************LGG************************************QVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************RIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQ***YGRPRSREEVLHFLNELGWLFQRK**********YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVG*****************************************RGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGP*
Disordered Region (DISEMBL)
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEP***************PGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLA***********EDITSRMLIHGHGNQSNNPTANVDIVNLLTALAR*************SVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPS*************************EQATPNFLKRTTMDFP***********************ETRVNLPLQLFS***********************************VVQTFFPMQ**********LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAG****************DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSG*********************KCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Disordered Region (DISPRO)
*****AQVAPSILMHQRLSSRLCEA***************************EQQNWNPKLWDWDSVGFVGKPVVDS***************************************TSAVTVGNVEDDGRLDLNLGGGLT****************************PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL*G*******************************NVDIVNLLTALARAQGK***RSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNF*S***************************DLLA*L*STLTAPSPDTLAAHS*************************************************************LP*******PE*DSPPKL***********************P************************************************************************************DCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGA********S*****EYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQS*******HGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFGPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1102	2.2.26 [Sep-21-2011]
Q8RY95	1035	Squamosa promoter-binding	yes	no	0.921	0.980	0.556	0.0
Q700C2	988	Squamosa promoter-binding	no	no	0.850	0.948	0.560	0.0
Q6Z8M8	1140	Squamosa promoter-binding	yes	no	0.966	0.934	0.466	0.0
A2YX04	1140	Squamosa promoter-binding	N/A	no	0.966	0.934	0.466	0.0
Q9SMX9	881	Squamosa promoter-binding	no	no	0.461	0.577	0.326	2e-80
Q9LGU7	862	Squamosa promoter-binding	no	no	0.472	0.604	0.315	5e-80
Q75LH6	969	Squamosa promoter-binding	no	no	0.474	0.539	0.331	1e-79
Q9S7P5	927	Squamosa promoter-binding	no	no	0.457	0.543	0.342	2e-79
P0DI11	359	Squamosa promoter-binding	no	no	0.078	0.242	0.643	1e-29
B9DI20	359	Squamosa promoter-binding	no	no	0.078	0.242	0.643	1e-29

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1118 (55%), Positives = 781/1118 (69%), Gaps = 103/1118 (9%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-------QAQSQNHYGGE 53
            M+EVGAQVA  + +HQ                ++ +KR L Y       Q+Q Q      
Sbjct: 1    MDEVGAQVAAPMFIHQ----------------SLGRKRDLYYPMSNRLVQSQPQ-----R 39

Query: 54   QQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGN 113
            +  WN K+WDWDS  F  KPV   D EV                                
Sbjct: 40   RDEWNSKMWDWDSRRFEAKPV---DVEVQEFD---------------------------- 68

Query: 114  TTTTSAVTVGNVEDDGR-LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPM 172
                  +T+ N   + R LDLNLG GLTAV+        V  +PNK+VRSGSPG   YPM
Sbjct: 69   ------LTLRNRSGEERGLDLNLGSGLTAVEETTTTTQNV--RPNKKVRSGSPG-GNYPM 119

Query: 173  CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
            CQVDNC EDLS+AKDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRS
Sbjct: 120  CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query: 233  CRRRLAGHNRRRRKT-QPEDITSRMLIHGHGNQSNN-PTANVDIVNLLTALARAQGKTED 290
            CRRRLAGHNRRRRKT QPE++ S +++ G+ + +NN   AN+D++ LLTALA AQGK   
Sbjct: 180  CRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDLMALLTALACAQGKNAV 239

Query: 291  RS-ISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNEN 349
            +  +   +VPDREQLL IL+KIN+LPLP DL +KL+N GSL RK   H + + QN +N  
Sbjct: 240  KPPVGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMN-- 297

Query: 350  TSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMD 409
             +SPSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK +  E      L++ T  
Sbjct: 298  GASPSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYENGVTTNLEKRTFG 357

Query: 410  FPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSS 469
            F SVGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED+S P ++SSRKY+SS SS
Sbjct: 358  FSSVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASS 417

Query: 470  NPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGS 529
            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+          N + +  R   +PLELF  S
Sbjct: 418  NPVEDRSPSSSPVMQELFPLQASPETMRSK----------NHKNSSPRTGCLPLELFGAS 467

Query: 530  NKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRK 589
            N+ A + +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I+FKL DKDPSQ PGTLR 
Sbjct: 468  NRGAADPNFKGFGQQSGY-ASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRS 526

Query: 590  EIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRN 649
            EIYNWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE  LLQR+  L+Q+S SDFWRN
Sbjct: 527  EIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRN 586

Query: 650  ARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLG 709
            ARF+V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV G+E S  +RGR+LTN G
Sbjct: 587  ARFIVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDG 646

Query: 710  TKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSF 769
              I CT MG Y + EVT + C+ +I+DE+ +   K+Q+  P  LGR FIEVENGF+G+SF
Sbjct: 647  ISIRCTHMGSYMAMEVTRAVCRQTIFDELNVNSFKVQNVHPGFLGRCFIEVENGFRGDSF 706

Query: 770  PVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR-PRSREEVLHFLNELGWLFQ 828
            P+IIA+A+ICKEL+ L  EF  +++    ++E QA    R P SREEVL FLNELGWLFQ
Sbjct: 707  PLIIANASICKELNRLGEEFHPKSQ---DMTEEQAQSSNRGPTSREEVLCFLNELGWLFQ 763

Query: 829  RKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLW 888
            + + S + + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE NL  D L+RE+L+ML 
Sbjct: 764  KNQTSELREQSDFSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLA 823

Query: 889  EIQLLNRAVKMKCRRMVDLLIHY-----SLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC 943
            EIQLLNRAVK K  +MV+LLIHY     +L+SS    +K++F PN+ GPGGITPLHLAAC
Sbjct: 824  EIQLLNRAVKRKSTKMVELLIHYLVNPLTLSSS----RKFVFLPNITGPGGITPLHLAAC 879

Query: 944  TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNG 1003
            TS SDD+ID LTNDPQEIG SSWN++ DA+G +PYSYA ++NNH YN LVARKLAD+RN 
Sbjct: 880  TSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNK 939

Query: 1004 QVTIPVGVE-IEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPY 1062
            QV++ +  E ++Q+GL+K     LS +  +   SC  CA  A K  +RV GSQ L   P 
Sbjct: 940  QVSLNIEHEVVDQTGLSKR----LSLEMNKSSSSCASCATVALKYQRRVSGSQRLFPTPI 995

Query: 1063 IHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            IHSMLA+A VCVCVC+F+   P +   + F W  LD+G
Sbjct: 996  IHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYG 1033

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/981 (56%), Positives = 706/981 (71%), Gaps = 44/981 (4%)

Query: 131  LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAP-----YPMCQVDNCKEDLSNA 185
            LDLNL  G    DVE    PV  ++P+K+VRSGSPG+       YP CQVDNCKEDLS A
Sbjct: 39   LDLNLPCGFN--DVEGT--PVDLTRPSKKVRSGSPGSGGGGGGNYPKCQVDNCKEDLSIA 94

Query: 186  KDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRR 245
            KDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRSCRRRL GHNRRRR
Sbjct: 95   KDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRR 154

Query: 246  KTQPEDITSRML-IHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQL 304
            KTQP+ ITS+++ +    N SNN   N+D++ LLTAL  AQG+ E  +     VP REQL
Sbjct: 155  KTQPDAITSQVVALENRDNTSNN--TNMDVMALLTALVCAQGRNEATTNGSPGVPQREQL 212

Query: 305  LMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTS-TDVQNRLNENTSSPSTMDLLAVLS 363
            L IL+KI +LPLP +L +KL+N G L RK P   S  + QN +N   SSPSTMDLLA LS
Sbjct: 213  LQILNKIKALPLPMNLTSKLNNIGILARKNPEQPSPMNPQNSMN-GASSPSTMDLLAALS 271

Query: 364  STLTAPSPDTLAAHSQRSSHSSDS-EKTKSTCPEQATPNFLKRTTMDFPSV-GGERSSTS 421
            ++L + +P+ +A  SQ    + +S ++TK T  + +    L++ T++FPS  GGER+S++
Sbjct: 272  ASLGSSAPEAIAFLSQGGFGNKESNDRTKLTSSDHSATTSLEKKTLEFPSFGGGERTSST 331

Query: 422  YQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP 481
              SP + SD + Q+TR +L LQLF+SSPE++S PK++SS KY+SS SSNP+E+RSPSSSP
Sbjct: 332  NHSPSQYSDSRGQDTRSSLSLQLFTSSPEEESRPKVASSTKYYSSASSNPVEDRSPSSSP 391

Query: 482  VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAAD-NCSFQS 540
            V+Q  FP+ ++ ET         R  N        R S +PLELF  SN+ A  N ++  
Sbjct: 392  VMQELFPLHTSPET--------RRYNNYKDTSTSPRTSCLPLELFGASNRGATANPNYNV 443

Query: 541  FPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPS 600
              +Q+GY +SSGSD+SP SLNS+AQ+ TG+I FKLF+KDPSQ P TLR EI+ WLS+ PS
Sbjct: 444  LRHQSGY-ASSGSDYSPPSLNSNAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPS 502

Query: 601  EMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQL 660
            +MES+IRPGCVILS+YV+M  + WEQLE NLLQR+ SLVQ  DS+FW N+RFLV+ G+QL
Sbjct: 503  DMESFIRPGCVILSVYVAMSASAWEQLEENLLQRVRSLVQ--DSEFWSNSRFLVNAGRQL 560

Query: 661  ASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGY 720
            ASHK G IR+ KSWRT + PELI+VSPLAVV G+E +  +RGRNLTN G ++ C  MG Y
Sbjct: 561  ASHKHGRIRLSKSWRTLNLPELITVSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNY 620

Query: 721  ASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICK 780
            AS EVT    + +  DE+ ++  ++Q  S   LGR FIE+ENG +G++FP+IIA+ATICK
Sbjct: 621  ASMEVTGREHRLTKVDELNVSSFQVQSASSVSLGRCFIELENGLRGDNFPLIIANATICK 680

Query: 781  ELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD 840
            EL+ LE EF  +    DVI E Q     RPRSREEVL FLNELGWLFQRK  S I    D
Sbjct: 681  ELNRLEEEFHPK----DVI-EEQIQNLDRPRSREEVLCFLNELGWLFQRKWTSDIHGEPD 735

Query: 841  YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDG-LSRESLEMLWEIQLLNRAVKM 899
            +SL RFKFLLV SV+R  C+L++ +LD++VE NL  DG L++ESL+ML +IQLLNRA+K 
Sbjct: 736  FSLPRFKFLLVCSVERDYCSLIRTVLDMMVERNLGKDGLLNKESLDMLADIQLLNRAIKR 795

Query: 900  KCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ 959
            +  +M + LIHYS+   N + + +IF P++AGPG ITPLHLAA TS SDD+IDALTNDPQ
Sbjct: 796  RNTKMAETLIHYSV---NPSTRNFIFLPSIAGPGDITPLHLAASTSSSDDMIDALTNDPQ 852

Query: 960  EIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLA 1019
            EIG S WN+++DA+G +P+SYA M++NH+YN LVARKLAD+RNGQ+++ +   I+Q GL+
Sbjct: 853  EIGLSCWNTLVDATGQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLS 912

Query: 1020 KEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLF 1079
            K     LSS+ K   +SC  CA  A K  ++V GS+ L   P IHSMLA+A VCVCVC+F
Sbjct: 913  KR----LSSELK---RSCNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVF 965

Query: 1080 LRGSPDIGLVAPFKWENLDFG 1100
            +   P +   + F W  LD+G
Sbjct: 966  MHAFPMVRQGSHFSWGGLDYG 986

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1168 (46%), Positives = 717/1168 (61%), Gaps = 103/1168 (8%)

Query: 3    EVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY---QAQSQNHYGGEQQNWNP 59
            EVG QVAP + +HQ           +    T AKKR   +      +    GG   NWNP
Sbjct: 4    EVGPQVAPPMFLHQ--------IQPLPPHATAAKKRGNPWPAAAVAAAEAKGG--GNWNP 53

Query: 60   KLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSA 119
            ++WDWDS     KP  D+    LR+    +     +              ++G   +   
Sbjct: 54   RMWDWDSRALTAKPSSDA----LRVNAGLSHHQQQQQQSPPAAAKAAEALRQGGGGSGGL 109

Query: 120  VTVGNVEDDGRLDLNLGGGLTAVDVEQP--------EPPVVTSKPNKRVRSGSPGTAP-- 169
                 + +D    +++    T V             + PVV  +P+KRVRSGSPG+A   
Sbjct: 110  NLQLGLREDAATPMDVSPAATTVSSSPSPPASSAPAQEPVV--RPSKRVRSGSPGSASGG 167

Query: 170  ----------------YPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRF 213
                            YPMCQVD+C+ DL+NAKDYHRRHKVCE+H K+TKALVG QMQRF
Sbjct: 168  GGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRF 227

Query: 214  CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVD 273
            CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP D+ S++L+ G  NQ N      D
Sbjct: 228  CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPTDVASQLLLPG--NQENAANRTQD 285

Query: 274  IVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSL-------PLPADLAAKLHN 326
            IVNL+T +AR QG    +  S   +PD++ L+ I+SKINS+         P   A  L+ 
Sbjct: 286  IVNLITVIARLQGSNVGKLPSIPPIPDKDNLVQIISKINSINNGNSASKSPPSEAVDLNA 345

Query: 327  FGSLNRKTPVHTSTDVQNRLN----------------ENTSSPSTMDLLAVLSSTLTAPS 370
              S  + +   T+   + + N                +  + PSTMDLLAVLS+ L   +
Sbjct: 346  SHSQQQDSVQRTTNGFEKQTNGLDKQTNGFDKQADGFDKQAVPSTMDLLAVLSTALATSN 405

Query: 371  PDTLAAHSQRSSHSSDSEKTKSTCPEQA-TPNFLKRTTMDFPSV----GGERSSTSYQSP 425
            PD+  + SQ SS SS + K+KS   E A   N  +++   F +       ERS   Y+ P
Sbjct: 406  PDSNTSQSQGSSDSSGNNKSKSQSTEPANVVNSHEKSIRVFSATRKNDALERSPEMYKQP 465

Query: 426  VEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQ 484
                   +QET   L L+LF S+ E+D P K+ ++ KY SS+SSNP++ERSPSSSP V  
Sbjct: 466  -------DQETPPYLSLRLFGST-EEDVPCKMDTANKYLSSESSNPLDERSPSSSPPVTH 517

Query: 485  TFFPMQSTSETVKSEKLSIGREVNANVEGNRSRG-SIMPLELFRGSNKAADNCSFQSFPY 543
             FFP++S  E  +      G ++ A VE + SR     PLELF+ S +  +N S  +  Y
Sbjct: 518  KFFPIRSVDEDARIA--DYGEDI-ATVEVSTSRAWRAPPLELFKDSERPIENGSPPNPAY 574

Query: 544  QAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEME 603
            Q+ YTS+S SDHSPS+ NSD QD TGRIIFKLF K+PS  PG LR EI NWL +SP+EME
Sbjct: 575  QSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEME 634

Query: 604  SYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASH 663
             YIRPGC++LS+Y+SMP   W++LE NLLQR+N+LVQ SD DFWR  RFLV T  QL S+
Sbjct: 635  GYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSY 694

Query: 664  KDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQ 723
            KDG  R+ KSWRTW++PEL  VSP+AVVGG++ S  L+GRNLT  GT+IHCT  G Y S+
Sbjct: 695  KDGATRLSKSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQIHCTSTGKYISK 754

Query: 724  EVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELS 783
            EV  S   G+IYD+  +    +      +LGR+FIEVEN F+GNSFPVIIA++++C+EL 
Sbjct: 755  EVLCSAYPGTIYDDSGVETFDLPGEPHLILGRYFIEVENRFRGNSFPVIIANSSVCQELR 814

Query: 784  LLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD--- 840
             LE+E    ++  D  S+ QAH+  R + ++EVLHFLNELGWLFQ+  AS+  + SD   
Sbjct: 815  SLEAELEG-SQFVDGSSDDQAHDARRLKPKDEVLHFLNELGWLFQKAAASTSAEKSDSSG 873

Query: 841  -----YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
                 +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+LEML EI LLNR
Sbjct: 874  LDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQETLEMLSEIHLLNR 933

Query: 896  AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
            AVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA   D+ DI+DALT
Sbjct: 934  AVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALT 992

Query: 956  NDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVG---VE 1012
            +DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N QVTI VG   + 
Sbjct: 993  DDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIH 1052

Query: 1013 IEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAV 1072
            ++QSG   E+        + R  SC +CA+  A L +R   S+GLL RPYIHSMLAIAAV
Sbjct: 1053 MDQSGNVGEKNKSAIQALQIR--SCNQCAILDAGLLRRPMHSRGLLARPYIHSMLAIAAV 1110

Query: 1073 CVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            CVCVC+F+R          FKWE LDFG
Sbjct: 1111 CVCVCVFMRALLRFNSGRSFKWERLDFG 1138

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1168 (46%), Positives = 717/1168 (61%), Gaps = 103/1168 (8%)

Query: 3    EVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY---QAQSQNHYGGEQQNWNP 59
            EVG QVAP + +HQ           +    T AKKR   +      +    GG   NWNP
Sbjct: 4    EVGPQVAPPMFLHQ--------IQPLPPHATAAKKRGNPWPAAAVAAAEAKGG--GNWNP 53

Query: 60   KLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSA 119
            ++WDWDS     KP  D+    LR+    +     +              ++G   +   
Sbjct: 54   RMWDWDSRALTAKPSSDA----LRVNAGLSHHQQQQQQSPPAAAKAAEALRQGGGGSGGL 109

Query: 120  VTVGNVEDDGRLDLNLGGGLTAVDVEQP--------EPPVVTSKPNKRVRSGSPGTAP-- 169
                 + +D    +++    T V             + PVV  +P+KRVRSGSPG+A   
Sbjct: 110  NLQLGLREDAATPMDVSPAATTVSSSPSPPASSAPAQEPVV--RPSKRVRSGSPGSASGG 167

Query: 170  ----------------YPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRF 213
                            YPMCQVD+C+ DL+NAKDYHRRHKVCE+H K+TKALVG QMQRF
Sbjct: 168  GGGGGGGGNSGGGGGSYPMCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRF 227

Query: 214  CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVD 273
            CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP D+ S++L+ G  NQ N      D
Sbjct: 228  CQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPTDVASQLLLPG--NQENAANRTQD 285

Query: 274  IVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSL-------PLPADLAAKLHN 326
            IVNL+T +AR QG    +  S   +PD++ L+ I+SKINS+         P   A  L+ 
Sbjct: 286  IVNLITVIARLQGSNVGKLPSIPPIPDKDNLVQIISKINSINNGNSASKSPPSEAVDLNA 345

Query: 327  FGSLNRKTPVHTSTDVQNRLN----------------ENTSSPSTMDLLAVLSSTLTAPS 370
              S  + +   T+   + + N                +  + PSTMDLLAVLS+ L   +
Sbjct: 346  SHSQQQDSVQRTTNGFEKQTNGLDKQTNGFDKQADGFDKQAVPSTMDLLAVLSTALATSN 405

Query: 371  PDTLAAHSQRSSHSSDSEKTKSTCPEQA-TPNFLKRTTMDFPSV----GGERSSTSYQSP 425
            PD+  + SQ SS SS + K+KS   E A   N  +++   F +       ERS   Y+ P
Sbjct: 406  PDSNTSQSQGSSDSSGNNKSKSQSTEPANVVNSHEKSIRVFSATRKNDALERSPEMYKQP 465

Query: 426  VEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQ 484
                   +QET   L L+LF S+ E+D P K+ ++ KY SS+SSNP++ERSPSSSP V  
Sbjct: 466  -------DQETPPYLSLRLFGST-EEDVPCKMDTANKYLSSESSNPLDERSPSSSPPVTH 517

Query: 485  TFFPMQSTSETVKSEKLSIGREVNANVEGNRSRG-SIMPLELFRGSNKAADNCSFQSFPY 543
             FFP++S  E  +      G ++ A VE + SR     PLELF+ S +  +N S  +  Y
Sbjct: 518  KFFPIRSVDEDARIA--DYGEDI-ATVEVSTSRAWRAPPLELFKDSERPIENGSPPNPAY 574

Query: 544  QAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEME 603
            Q+ YTS+S SDHSPS+ NSD QD TGRIIFKLF K+PS  PG LR EI NWL +SP+EME
Sbjct: 575  QSCYTSTSCSDHSPSTSNSDGQDRTGRIIFKLFGKEPSTIPGNLRGEIVNWLKHSPNEME 634

Query: 604  SYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASH 663
             YIRPGC++LS+Y+SMP   W++LE NLLQR+N+LVQ SD DFWR  RFLV T  QL S+
Sbjct: 635  GYIRPGCLVLSMYLSMPAIAWDELEENLLQRVNTLVQGSDLDFWRKGRFLVRTDAQLVSY 694

Query: 664  KDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQ 723
            KDG  R+ KSWRTW++PEL  VSP+AVVGG++ S  L+GRNLT  GT+IHCT  G Y S+
Sbjct: 695  KDGATRLSKSWRTWNTPELTFVSPIAVVGGRKTSLILKGRNLTIPGTQIHCTSTGKYISK 754

Query: 724  EVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELS 783
            EV  S   G+IYD+  +    +      +LGR+FIEVEN F+GNSFPVIIA++++C+EL 
Sbjct: 755  EVLCSAYPGTIYDDSGVETFDLPGEPHLILGRYFIEVENRFRGNSFPVIIANSSVCQELR 814

Query: 784  LLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD--- 840
             LE+E    ++  D  S+ QAH+  R + ++EVLHFLNELGWLFQ+  AS+  + SD   
Sbjct: 815  SLEAELEG-SQFVDGSSDDQAHDARRLKPKDEVLHFLNELGWLFQKAAASTSAEKSDSSG 873

Query: 841  -----YSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
                 +S +RF++LL+FS +R  C+L K +L+IL + +L+ D LS+E+LEML EI LLNR
Sbjct: 874  LDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQETLEMLSEIHLLNR 933

Query: 896  AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
            AVK K   M  LL+ + +   +D+ + Y F PN+AGPGG+TPLHLAA   D+ DI+DALT
Sbjct: 934  AVKRKSSHMARLLVQFVVVCPDDS-KLYPFLPNVAGPGGLTPLHLAASIEDAVDIVDALT 992

Query: 956  NDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVG---VE 1012
            +DPQ+IG S W+S LD  G SP +YA ++NN+AYN+LVA+KL DR+N QVTI VG   + 
Sbjct: 993  DDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDRKNNQVTIMVGKEEIH 1052

Query: 1013 IEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAV 1072
            ++QSG   E+        + R  SC +CA+  A L +R   S+GLL RPYIHSMLAIAAV
Sbjct: 1053 MDQSGNVGEKNKSAIQALQIR--SCNQCAILDAGLLRRPMHSRGLLARPYIHSMLAIAAV 1110

Query: 1073 CVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            CVCVC+F+R          FKWE LDFG
Sbjct: 1111 CVCVCVFMRALLRFNSGRSFKWERLDFG 1138

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score =  301 bits (772), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/551 (32%), Positives = 300/551 (54%), Gaps = 42/551 (7%)

Query: 564  AQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYAT 623
            AQ  TGRI+FKLF K+P++FP  LR +I +WLS+SP++MESYIRPGC++L++Y+      
Sbjct: 357  AQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETA 416

Query: 624  WEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRV--CKSWRTWSSPE 681
            WE+L  +L   +  L+  SD   W      V    QLA   +G + V    S ++     
Sbjct: 417  WEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSLKSRDYSH 476

Query: 682  LISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVT--SSTCQGSIYDE-- 737
            +ISV PLA+   ++  F ++G NL   GT++ C+  G Y  QE T  S+T +   + +  
Sbjct: 477  IISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSVEGKYLIQETTHDSTTREDDDFKDNS 536

Query: 738  IILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFP-VIIADATICKELSLLESEFGAEAKV 795
             I+  +      P + GR F+E+E+ G   + FP +++ D  +C E+ +LE+        
Sbjct: 537  EIVECVNFSCDMPILSGRGFMEIEDQGLSSSFFPFLVVEDDDVCSEIRILETTL------ 590

Query: 796  CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQR-KRASSIVKGSDYSLSRFKFLLVFSV 854
                      E+    S ++ + F++E+GWL  R K   S      + L RF++L+ FS+
Sbjct: 591  ----------EFTGTDSAKQAMDFIHEIGWLLHRSKLGESDPNPGVFPLIRFQWLIEFSM 640

Query: 855  DRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLT 914
            DR  CA+++ +L++  +G  ++   S  S   L E+ LL+RAV+   + MV++L+ Y   
Sbjct: 641  DREWCAVIRKLLNMFFDG--AVGEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPK 698

Query: 915  SSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG 974
               ++    +F P+ AGP G+TPLH+AA    S+D++DALT DP  +G  +W +  D++G
Sbjct: 699  QQRNS----LFRPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTG 754

Query: 975  HSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHG--LSSQFKQ 1032
             +P  YA ++ + +Y  L+ RK+  +   +  + V + +  S   +++     ++S  + 
Sbjct: 755  FTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKEPKSGPMASALEI 814

Query: 1033 RGKSCTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLV- 1089
                C  C       +K V G+  + +  RP + SM+AIAAVCVCV L  +  P++  V 
Sbjct: 815  TQIPCKLCD------HKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVF 868

Query: 1090 APFKWENLDFG 1100
             PF+WE LD+G
Sbjct: 869  QPFRWELLDYG 879

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1

 Score =  300 bits (767), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 303/567 (53%), Gaps = 46/567 (8%)

Query: 568  TGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQL 627
            T +I+FKLF K+P+ FP  LR +I +WLSN PS++ESYIRPGC+IL++Y+ +P   W++L
Sbjct: 310  TDKIVFKLFGKEPNDFPSDLRAQILSWLSNCPSDIESYIRPGCIILTIYMRLPNWMWDKL 369

Query: 628  EGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWR--TWSSPELISV 685
              +    I  L+  S    WR           L    +GN+ +   W+    +  +++ +
Sbjct: 370  AADPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLMLASPWQPAIGNKHQILFI 429

Query: 686  SPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAG--- 742
            +P+AV      +F ++G N+    TK+ C F G Y  QE T       + D  +  G   
Sbjct: 430  TPIAVACSSTANFSVKGLNIAQPTTKLLCIFGGKYLIQEATEKL----LDDTKMQRGPQC 485

Query: 743  LKIQDTSPSVLGRFFIEVENGFKGN-SFPVIIADATICKELSLLESEFGAEAKVCDVISE 801
            L    + PS  GR FIEVE+  + + SFP ++A+  +C E+  LE      +    ++ +
Sbjct: 486  LTFSCSFPSTSGRGFIEVEDLDQSSLSFPFVVAEEDVCSEIRTLEHLLNLVSFDDTLVEK 545

Query: 802  HQAHEYGRPRSREEVLHFLNELGWLFQRK--RASSIVKG---SDYSLSRFKFLLVFSVDR 856
            +         SR+  L+FL+E GW  QR   RA+S         +  +RF++LL F+VDR
Sbjct: 546  NDLLA-----SRDRALNFLHEFGWFLQRSHIRATSETPKDCTEGFPAARFRWLLSFAVDR 600

Query: 857  GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS 916
              CA++K +LD L +G + +D   + ++E + +  L+  AV  + + ++D L+ Y+ +S+
Sbjct: 601  EFCAVIKKLLDTLFQGGVDLD--VQSTVEFVLKQDLVFVAVNKRSKPLIDFLLTYTTSSA 658

Query: 917  ------NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL 970
                  +  P +++F P++AGP  ITPLH+AA  SD+  ++DALT+DPQ++G  +W +  
Sbjct: 659  PMDGTESAAPAQFLFTPDIAGPSDITPLHIAATYSDTAGVLDALTDDPQQLGIKAWKNAR 718

Query: 971  DASGHSPYSYALMKNNHAYNKLVARKLADR------RNGQVTIPVGVEIEQSGLAKEQVH 1024
            DA+G +P  YA  + + +Y ++V  K+  R           +     +  +   ++ +  
Sbjct: 719  DATGLTPEDYARKRGHESYIEMVQNKIDSRLPKAHVSVTISSTTSTTDFTEKHASQSKTT 778

Query: 1025 GLSSQFKQRGK--------SCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCV 1076
              ++   ++G+        SC +C     +L  R   ++ L  RP + S++AIAAVCVCV
Sbjct: 779  DQTAFDVEKGQQISTKPPLSCRQC---LPELAYRHHLNRFLSTRPAVLSLVAIAAVCVCV 835

Query: 1077 CLFLRGSPDI-GLVAPFKWENLDFGPK 1102
             L ++G P I G+  PF+W +L  GPK
Sbjct: 836  GLIMQGPPHIGGMRGPFRWNSLRSGPK 862

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1

 Score =  299 bits (765), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 184/555 (33%), Positives = 294/555 (52%), Gaps = 32/555 (5%)

Query: 561  NSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 620
            N DAQ  T +I+FKLF+K PS  P  LR +I  WLS+SP+++ESYIRPGC+IL++Y+ + 
Sbjct: 432  NGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSPTDIESYIRPGCIILTVYLRLV 491

Query: 621  YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 680
             + W++L  N+   ++ L+  S  +FW +    V    Q+A   +G + + +     +  
Sbjct: 492  ESAWKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQIAFMHNGQLMLDRPLANSAHH 551

Query: 681  --ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEI 738
              +++ V P+A     +++F++ G NL +  +++ C+F G    QE T +      +D+I
Sbjct: 552  YCKILCVRPIAAPFSTKVNFRVEGLNLVSDSSRLICSFEGSCIFQEDTDNIVDDVEHDDI 611

Query: 739  ILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFPVIIADATICKELSLLESEFGAEAKVCD 797
                L      PS  GR F+EVE+ GF    FP IIA+  IC E+  LES F        
Sbjct: 612  EY--LNFCCPLPSSRGRGFVEVEDGGFSNGFFPFIIAEQDICSEVCELESIF-------- 661

Query: 798  VISEHQAHEYG-RPRSREEVLHFLNELGWLFQRKRASS---IVKGSDYSLSRFKFLLVFS 853
               E  +HE      +R + L FLNELGWL  R    S    V  + +++ RF+ L +F+
Sbjct: 662  ---ESSSHEQADDDNARNQALEFLNELGWLLHRANIISKQDKVPLASFNIWRFRNLGIFA 718

Query: 854  VDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSL 913
            ++R  CA+ K +LD L  G + +   S E  E++    LL+ AV+MK  +MV  L+ Y  
Sbjct: 719  MEREWCAVTKLLLDFLFTGLVDIGSQSPE--EVVLSENLLHAAVRMKSAQMVRFLLGYKP 776

Query: 914  TSS-NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA 972
              S   T + ++F P+  GP   TPLH+AA T D++D++DALTNDP  +G ++W +  D 
Sbjct: 777  NESLKRTAETFLFRPDAQGPSKFTPLHIAAATDDAEDVLDALTNDPGLVGINTWRNARDG 836

Query: 973  SGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGV-----EIEQSGLAKEQVH-GL 1026
            +G +P  YA  + N AY  +V +K+ ++  G+  + +GV      +   G+   +V   +
Sbjct: 837  AGFTPEDYARQRGNDAYLNMVEKKI-NKHLGKGHVVLGVPSSIHPVITDGVKPGEVSLEI 895

Query: 1027 SSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDI 1086
                     SC  C+  A         ++  L RP + +++ IA +CVCV L L   P +
Sbjct: 896  GMTVPPPAPSCNACSRQALMYPNST--ARTFLYRPAMLTVMGIAVICVCVGLLLHTCPKV 953

Query: 1087 GLVAPFKWENLDFGP 1101
                 F+WE L+ GP
Sbjct: 954  YAAPTFRWELLERGP 968

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  298 bits (762), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 192/561 (34%), Positives = 295/561 (52%), Gaps = 57/561 (10%)

Query: 564  AQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYAT 623
            AQ  T RI+FKLF K+P+ FP  LR +I NWL+++P++MESYIRPGC++L++Y+    A+
Sbjct: 398  AQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEAS 457

Query: 624  WEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKS--WRTWSSPE 681
            WE+L  +L   +  L+  SD   W +    +    QLA   +G + +  S   R+    +
Sbjct: 458  WEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYSQ 517

Query: 682  LISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYD----- 736
            +I+V PLAV   ++  F ++G NL   GT++ CT  G +  QE T    QG + +     
Sbjct: 518  IITVRPLAVT--KKAQFTVKGINLRRPGTRLLCTVEGTHLVQEAT----QGGMEERDDLK 571

Query: 737  ---EIILAGLKIQDTSPSVLGRFFIEVEN--GFKGNSFPVIIA-DATICKELSLLESEFG 790
               EI       +   P   GR F+E+E+  G   + FP I++ D  IC E+  LES   
Sbjct: 572  ENNEIDFVNFSCE--MPIASGRGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTL- 628

Query: 791  AEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD------YSLS 844
                           E+    S  + + F++E+GWL  R    S +  SD      +SL 
Sbjct: 629  ---------------EFTGTDSAMQAMDFIHEIGWLLHRSELKSRLAASDHNPEDLFSLI 673

Query: 845  RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRM 904
            RFKFL+ FS+DR  C ++K +L+IL E   ++D     +L    E+ LL+RAV+   + M
Sbjct: 674  RFKFLIEFSMDREWCCVMKKLLNILFEEG-TVDPSPDAALS---ELCLLHRAVRKNSKPM 729

Query: 905  VDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPS 964
            V++L+ +S    N T    +F P+ AGPGG+TPLH+AA    S+D++DALT DP   G  
Sbjct: 730  VEMLLRFSPKKKNQTLAG-LFRPDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQ 788

Query: 965  SWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD----RRNGQVTIPVGVEIEQSGLAK 1020
            +W +  D +G +P  YA ++ + +Y  LV RKL+     + +  V IP    IE     +
Sbjct: 789  AWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKR 848

Query: 1021 EQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFL 1080
              +   S +  Q      +C +   K        + +  RP + SM+AIAAVCVCV L  
Sbjct: 849  SPMDSSSLEITQ----INQCKLCDHKRVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLF 904

Query: 1081 RGSPDIGLV-APFKWENLDFG 1100
            +  P++  V  PF+WE L++G
Sbjct: 905  KSCPEVLYVFQPFRWELLEYG 925

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 65/87 (74%)

Query: 166 GTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSE 225
           GT   P+C VD C  D SN ++YH+RHKVC++HSK+    +    QRFCQQCSRFH L E
Sbjct: 94  GTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEE 153

Query: 226 FDEGKRSCRRRLAGHNRRRRKTQPEDI 252
           FDEGKRSCR+RL GHNRRRRK QPE I
Sbjct: 154 FDEGKRSCRKRLDGHNRRRRKPQPEHI 180

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 65/87 (74%)

Query: 166 GTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSE 225
           GT   P+C VD C  D SN ++YH+RHKVC++HSK+    +    QRFCQQCSRFH L E
Sbjct: 94  GTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEE 153

Query: 226 FDEGKRSCRRRLAGHNRRRRKTQPEDI 252
           FDEGKRSCR+RL GHNRRRRK QPE I
Sbjct: 154 FDEGKRSCRKRLDGHNRRRRKPQPEHI 180

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
225457689	1070	PREDICTED: squamosa promoter-binding-lik	0.960	0.988	0.701	0.0
255539362	1073	Squamosa promoter-binding protein, putat	0.967	0.993	0.699	0.0
224065627	1044	predicted protein [Populus trichocarpa]	0.860	0.908	0.700	0.0
297745623	921	unnamed protein product [Vitis vinifera]	0.826	0.989	0.624	0.0
449455740	1031	PREDICTED: squamosa promoter-binding-lik	0.927	0.991	0.595	0.0
449531663	1031	PREDICTED: LOW QUALITY PROTEIN: squamosa	0.927	0.991	0.593	0.0
356574155	1009	PREDICTED: squamosa promoter-binding-lik	0.894	0.977	0.583	0.0
356523388	1019	PREDICTED: squamosa promoter-binding-lik	0.901	0.975	0.588	0.0
297845078	1040	hypothetical protein ARALYDRAFT_472338 [	0.932	0.988	0.560	0.0
15218091	1035	squamosa promoter binding-like protein 1	0.921	0.980	0.556	0.0

>gi|225457689|ref|XP_002273784.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Vitis vinifera]

 Score = 1467 bits (3797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/1110 (70%), Positives = 886/1110 (79%), Gaps = 52/1110 (4%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-----QAQSQNHYGGEQQ 55
            MEEVGAQVAP I +HQ LSSR  EA      + MAKKR L Y     Q Q    +   + 
Sbjct: 1    MEEVGAQVAPPIFIHQTLSSRFHEA------VPMAKKRDLPYPSSNFQHQHPQRFQNPRD 54

Query: 56   NWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTT 115
            NWNPK+WDWDSV FV  P+   + E+LRLG AT  ++  K             +K+  T 
Sbjct: 55   NWNPKVWDWDSVRFVANPL---ESELLRLGTATPVQTELK-------------KKQEGTG 98

Query: 116  TTSAVTVGNV-EDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQ 174
             T+A+    V EDD  L L LGGGL+++     E PV  S+P+KRVRSGSPG++ YPMCQ
Sbjct: 99   ITTALKKNPVDEDDESLRLKLGGGLSSI-----EEPV--SRPSKRVRSGSPGSSSYPMCQ 151

Query: 175  VDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCR 234
            VDNC+EDLSNAKDYHRRHKVCE+HSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCR
Sbjct: 152  VDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCR 211

Query: 235  RRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSIS 294
            RRLAGHNRRRRKTQPED++SR+L+ G  N+ N    N+DIVNLLTALAR QG  E +S +
Sbjct: 212  RRLAGHNRRRRKTQPEDVSSRLLLPG--NRDNTGNRNLDIVNLLTALARTQGNNEVKSAN 269

Query: 295  CSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPS 354
             SSVPDR+QL+ ILSK+NSLPLPAD AAKL   GSLNR TP  +S++ QNRLN  TSSPS
Sbjct: 270  NSSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPS 329

Query: 355  TMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQAT-PNFLKRTTMDFPSV 413
            TMDLLAVLS+TL A +PD LA  SQRSS SSDSEKTK TC +QAT P+  KR T++FPSV
Sbjct: 330  TMDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKTKLTCLDQATGPDLQKRQTLEFPSV 389

Query: 414  GGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIE 473
            GGERSSTSYQSP+EDSD Q QET+ NLPLQLFSSS EDDSPPKL S+RKYFSSDSSNP+E
Sbjct: 390  GGERSSTSYQSPMEDSDCQVQETQPNLPLQLFSSSLEDDSPPKLGSARKYFSSDSSNPME 449

Query: 474  ERSPSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKA 532
            ERSPSSSP VVQ  FPMQ++ ETVK E++SI  EVN N+   R+ G+   LELFR S++ 
Sbjct: 450  ERSPSSSPPVVQKLFPMQASMETVKPERMSISGEVNGNIGAGRAHGAT-SLELFRRSDRG 508

Query: 533  ADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIY 592
            ADN + QSFPYQAGYTSSSGSDHSPSSLNSDAQD TGRIIFKLFDKDPS FPGTLR EIY
Sbjct: 509  ADNGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIY 568

Query: 593  NWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARF 652
            NWL++SPSEMESYIRPGCV+LS+Y SM  A WEQLE NLL R+NSLVQDSDSDFWRN RF
Sbjct: 569  NWLAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRF 628

Query: 653  LVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKI 712
            LVHTG++LASHKDG IR+CKSWRTW+SPELISVSPLAVVGGQE SF L+GRNL N GTKI
Sbjct: 629  LVHTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKI 688

Query: 713  HCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVI 772
            HCT+MGGY S+EV     QG++YDEI     KI D  PSVLGR FIEVENGF+GNSFPVI
Sbjct: 689  HCTYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVI 748

Query: 773  IADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRA 832
            +ADATICKEL LLESEF  EAKVCDVISE Q ++ GRP SREEVLHFLNELGWLFQRK  
Sbjct: 749  VADATICKELRLLESEFDEEAKVCDVISEDQVYDSGRPSSREEVLHFLNELGWLFQRK-- 806

Query: 833  SSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQL 892
             S++ G DYSL+RFKFL  FSV+R CCALVK +LDILVE NL  DGLS +SLE L E+QL
Sbjct: 807  FSMLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQL 866

Query: 893  LNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIID 952
            L+RAVK + R+MVDLLIHYS+ SS+   +KYIFPPNL G GGITPLHLAACT+ SDDIID
Sbjct: 867  LSRAVKRRYRKMVDLLIHYSVASSSS--KKYIFPPNLVGAGGITPLHLAACTAGSDDIID 924

Query: 953  ALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVE 1012
            ALT+DPQEIG  SWNS+LDASG SPY+YA+M+NNH+YN+LVARKLADRRNGQV++ +   
Sbjct: 925  ALTSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENA 984

Query: 1013 IEQ--SGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIA 1070
            +EQ    + +EQ       F Q   SC KCAV AAK ++R+ GSQGLL+RPYIHSMLAIA
Sbjct: 985  MEQPWPKVGQEQ------HFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIA 1038

Query: 1071 AVCVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            AVCVCVCLFLRGSPDIGLVAPFKWENLD+G
Sbjct: 1039 AVCVCVCLFLRGSPDIGLVAPFKWENLDYG 1068

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539362|ref|XP_002510746.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223551447|gb|EEF52933.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score = 1466 bits (3796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/1105 (69%), Positives = 882/1105 (79%), Gaps = 39/1105 (3%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQ---NW 57
            MEEVGAQVA  I +HQ LSSR C+A       +MAKKR LSYQ  +  H+   Q    NW
Sbjct: 1    MEEVGAQVASPIFIHQALSSRFCDA------ASMAKKRDLSYQTSNFQHHRFPQNPRDNW 54

Query: 58   NPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTT 117
            NPK WDWDSV FV KP+ D+D  VL+LG A+ S+   KT  ++N+N    N         
Sbjct: 55   NPKAWDWDSVRFVAKPL-DADTNVLQLGTAS-SDHQKKTNASVNHNLTLKN--------- 103

Query: 118  SAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDN 177
             A   G+ EDDG L LNL G   AV     E PV  S+PNKRVRSGSPGTA YPMCQVDN
Sbjct: 104  -APPAGD-EDDG-LRLNLAGVFNAV-----EEPV--SRPNKRVRSGSPGTATYPMCQVDN 153

Query: 178  CKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 237
            CKEDLSNAKDYHRRHKVCELHSKST+ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL
Sbjct: 154  CKEDLSNAKDYHRRHKVCELHSKSTQALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 213

Query: 238  AGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSS 297
            AGHNRRRRKTQPED+TSR+L+ G  N+    +AN+DIVNLLTALAR QGK  D+ I+ SS
Sbjct: 214  AGHNRRRRKTQPEDVTSRLLLPG--NRDTASSANLDIVNLLTALARTQGKHADKRINASS 271

Query: 298  VPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMD 357
            +PDR+QL+ ILSKINSLPLP DLAA+L N GSLNRK P   S++ QNRL    SSPSTMD
Sbjct: 272  MPDRDQLIQILSKINSLPLPMDLAAQLSNIGSLNRKNPEQPSSEHQNRLLGTASSPSTMD 331

Query: 358  LLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQ-ATPNFLKRTTMDFPSVGGE 416
            LLAVLS+TL A +PD LA  SQRSS SSDSEK+K TC +Q A PN  KR  +DFPS+  E
Sbjct: 332  LLAVLSATLAASAPDALAFLSQRSSQSSDSEKSKLTCVDQDAGPNLQKRPIVDFPSMALE 391

Query: 417  RSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERS 476
            +SS+ YQSPVE+SD Q QE+  NLPLQLFSSSPE+ SPPKL+SSRKYFSSDSSNP E RS
Sbjct: 392  KSSSCYQSPVEESDCQLQESHPNLPLQLFSSSPEESSPPKLASSRKYFSSDSSNPSEGRS 451

Query: 477  PSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADN 535
            PSSSP V+Q  FP+QS ++TVKSEK+SI REVNAN+EG+RS GSI+PLELFRGS+  A  
Sbjct: 452  PSSSPPVMQKLFPLQSNADTVKSEKVSITREVNANIEGSRSHGSILPLELFRGSDGRAVQ 511

Query: 536  CSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWL 595
             S+QSFPYQAGYTSSSGSDHSPSS NSDAQD TGRIIFKLFDKDPS FPG LR +IYNWL
Sbjct: 512  SSYQSFPYQAGYTSSSGSDHSPSSQNSDAQDRTGRIIFKLFDKDPSHFPGKLRTQIYNWL 571

Query: 596  SNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVH 655
            SNSPSEMESYIRPGCV+LS+Y+SM  A WE+LE NLLQ+++SLVQDS SDFWR  RFL+H
Sbjct: 572  SNSPSEMESYIRPGCVVLSVYLSMSSAKWERLERNLLQQVDSLVQDSYSDFWRTGRFLLH 631

Query: 656  TGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCT 715
            TG+QLASHKDGNIR+CKSWRTWSSPELISVSP+AVVGGQE S  LRGRNLTN GTKIHCT
Sbjct: 632  TGRQLASHKDGNIRLCKSWRTWSSPELISVSPVAVVGGQETSLLLRGRNLTNAGTKIHCT 691

Query: 716  FMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIAD 775
            +MGGY S EV  ST  G+IYDEI ++G K+  + PS LGR FIEVENGFKGNSFPVI+AD
Sbjct: 692  YMGGYTSMEVMESTLPGAIYDEINMSGFKVHGSPPSSLGRLFIEVENGFKGNSFPVIVAD 751

Query: 776  ATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSI 835
            ATICKEL LLE EF   +K CD+ISE QA   GRP+SREE LHFLNELGWLFQR+RASS+
Sbjct: 752  ATICKELRLLECEFDEISKDCDIISEEQAQYLGRPKSREEALHFLNELGWLFQRRRASSV 811

Query: 836  VKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
             +  DYSL RFKFLL+FSV+R  CALVK ILD+LVE N+ M GLS+E LEML EI L+NR
Sbjct: 812  YEIPDYSLGRFKFLLIFSVERDYCALVKTILDMLVERNMGMSGLSKECLEMLSEIHLVNR 871

Query: 896  AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
            AVK +CR+MVDLLIHY +  S  + + YIFPP+LAGPGGITPLHLAACTS SDD++DALT
Sbjct: 872  AVKRQCRKMVDLLIHYYINCSELSSKSYIFPPSLAGPGGITPLHLAACTSGSDDLVDALT 931

Query: 956  NDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQ 1015
            NDPQEIG S WNS++DA+  SPY YA M +NH+YNKLVA K ADRRNGQV++ +G EI Q
Sbjct: 932  NDPQEIGLSCWNSLVDANHQSPYDYATMTDNHSYNKLVAHKHADRRNGQVSVRIGNEIVQ 991

Query: 1016 SGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVC 1075
            S  ++     + S  +Q  +SC +CA  AAK N+R+ GSQGLL RPYIHSMLAIAAVCVC
Sbjct: 992  SLSSR-----MISDVEQERRSCARCATVAAKYNRRIMGSQGLLQRPYIHSMLAIAAVCVC 1046

Query: 1076 VCLFLRGSPDIGLVAPFKWENLDFG 1100
            VCLFLRG+PDIGLVAPFKWE LD+G
Sbjct: 1047 VCLFLRGAPDIGLVAPFKWETLDYG 1071

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065627|ref|XP_002301891.1| predicted protein [Populus trichocarpa] gi|222843617|gb|EEE81164.1| predicted protein [Populus trichocarpa]

 Score = 1365 bits (3534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/969 (70%), Positives = 792/969 (81%), Gaps = 21/969 (2%)

Query: 144  VEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTK 203
            VE+P      S+PNKRVRSGSPG   YPMCQVDNCKEDLS AKDYHRRHKVC++HSK+TK
Sbjct: 83   VEEP-----VSRPNKRVRSGSPGNGSYPMCQVDNCKEDLSKAKDYHRRHKVCQVHSKATK 137

Query: 204  ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGN 263
            ALVGKQMQRFCQQCSRFHPL+EFDEGKRSCRRRLAGHNRRRRKTQPED+TSR+L+ G+ +
Sbjct: 138  ALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRLLLPGNPD 197

Query: 264  QSNNPTANVDIVNLLTALARAQGKTEDRSI----------SCSSVPDREQLLMILSKINS 313
             +NN   N+DIVNLLTALAR+QGKT    I          +C +VPD++QL+ IL+KINS
Sbjct: 198  MNNN--GNLDIVNLLTALARSQGKTYLPMIDFYVPPFVLTNCPTVPDKDQLIQILNKINS 255

Query: 314  LPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDT 373
            LPLP DLAAKL N  SLN K P       QNRLN   SSPST DLLAVLS+TL A +PD 
Sbjct: 256  LPLPMDLAAKLSNIASLNVKNPNQPYLGHQNRLNGTASSPSTNDLLAVLSTTLAASAPDA 315

Query: 374  LAAHSQRSSHSSDSEKTKSTCPEQAT-PNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQ 432
            LA  SQRSS SSD++K+K   P Q T P+  KR+ ++FP+VG ER S  Y+SP EDSD Q
Sbjct: 316  LAILSQRSSQSSDNDKSKLPGPNQVTVPHLQKRSNVEFPAVGVERISRCYESPAEDSDYQ 375

Query: 433  NQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQS 491
             QE+R NLPLQLFSSSPE++S  K +SS KYFSSDSSNPIEERSPSSSP VVQ  FP+QS
Sbjct: 376  IQESRPNLPLQLFSSSPENESRQKPASSGKYFSSDSSNPIEERSPSSSPPVVQKLFPLQS 435

Query: 492  TSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSS 551
            T+ET+KSEK+S+ REVNANVEG+RS G ++PLELFRG N+  D+ SFQSFPY+ GYTSSS
Sbjct: 436  TAETMKSEKMSVSREVNANVEGDRSHGCVLPLELFRGPNREPDHSSFQSFPYRGGYTSSS 495

Query: 552  GSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCV 611
            GSDHSPSS NSD QD TGRIIFKLFDKDPS FPGTLR +IYNWLSNSPSEMESYIRPGCV
Sbjct: 496  GSDHSPSSQNSDPQDRTGRIIFKLFDKDPSHFPGTLRTKIYNWLSNSPSEMESYIRPGCV 555

Query: 612  ILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVC 671
            +LS+Y+SMP A+WEQLE NLLQ ++SLVQDSDSD WR+ RFL++TG+QLASHKDG +R+C
Sbjct: 556  VLSVYLSMPSASWEQLERNLLQLVDSLVQDSDSDLWRSGRFLLNTGRQLASHKDGKVRLC 615

Query: 672  KSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQ 731
            KSWRTWSSPELI VSP+AV+GGQE S +L+GRNLT  GTKIHCT+MGGY S+EVT S+  
Sbjct: 616  KSWRTWSSPELILVSPVAVIGGQETSLQLKGRNLTGPGTKIHCTYMGGYTSKEVTDSSSP 675

Query: 732  GSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGA 791
            GS+YDEI + G KI   SPS+LGR FIEVENGFKGNSFPVIIADA+ICKEL LLESEF  
Sbjct: 676  GSMYDEINVGGFKIHGPSPSILGRCFIEVENGFKGNSFPVIIADASICKELRLLESEFDE 735

Query: 792  EAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLV 851
             A V +++SE Q  + GRPRSREEV+HFLNELGWLFQRK   S+ +  DYSL+RFKFLL+
Sbjct: 736  NAVVSNIVSEEQTRDLGRPRSREEVMHFLNELGWLFQRKSMPSMHEAPDYSLNRFKFLLI 795

Query: 852  FSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY 911
            FSV+R  C LVK ILD+LVE N   D LS+E LEML+EIQLLNR+VK +CR+M DLLIHY
Sbjct: 796  FSVERDYCVLVKTILDMLVERNTCRDELSKEHLEMLYEIQLLNRSVKRRCRKMADLLIHY 855

Query: 912  SLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD 971
            S+   +++ + YIFPPN+ GPGGITPLHLAAC S SD ++DALTNDP EIG S WNS+LD
Sbjct: 856  SIIGGDNSSRTYIFPPNVGGPGGITPLHLAACASGSDGLVDALTNDPHEIGLSCWNSVLD 915

Query: 972  ASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFK 1031
            A+G SPY+YA+M  NH+YN LVARKLAD+RNGQ+++ +G EIEQ+ L  EQ H   SQF+
Sbjct: 916  ANGLSPYAYAVMTKNHSYNLLVARKLADKRNGQISVAIGNEIEQAAL--EQEHVTISQFQ 973

Query: 1032 QRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAP 1091
            +  KSC KCA  AAK++ R  GSQGLL RPY+HSMLAIAAVCVCVCLF RG+PDIGLVAP
Sbjct: 974  RERKSCAKCASVAAKMHGRFLGSQGLLQRPYVHSMLAIAAVCVCVCLFFRGAPDIGLVAP 1033

Query: 1092 FKWENLDFG 1100
            FKWENL++G
Sbjct: 1034 FKWENLNYG 1042

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745623|emb|CBI40788.3| unnamed protein product [Vitis vinifera]

 Score = 1236 bits (3197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1108 (62%), Positives = 777/1108 (70%), Gaps = 197/1108 (17%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-----QAQSQNHYGGEQQ 55
            MEEVGAQVAP I +HQ LSSR  EA      + MAKKR L Y     Q Q    +   + 
Sbjct: 1    MEEVGAQVAPPIFIHQTLSSRFHEA------VPMAKKRDLPYPSSNFQHQHPQRFQNPRD 54

Query: 56   NWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTT 115
            NWNPK+WDWDSV FV  P+   + E+LRLG AT S                         
Sbjct: 55   NWNPKVWDWDSVRFVANPL---ESELLRLGTATPS------------------------- 86

Query: 116  TTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQV 175
                           L L LGGGL+++     E PV  S+P+KRVRSGSPG++ YPMCQV
Sbjct: 87   ---------------LRLKLGGGLSSI-----EEPV--SRPSKRVRSGSPGSSSYPMCQV 124

Query: 176  DNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRR 235
            DNC+EDLSNAKDYHRRHKVCE+HSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRR
Sbjct: 125  DNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRR 184

Query: 236  RLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISC 295
            RLAGHNRRRRKTQPED++SR+L+ G  N+ N    N+DIVNLLTALAR QG  E +S + 
Sbjct: 185  RLAGHNRRRRKTQPEDVSSRLLLPG--NRDNTGNRNLDIVNLLTALARTQGNNEVKSANN 242

Query: 296  SSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPST 355
            SSVPDR+QL+ ILSK+NSLPLPAD AAKL   GSLNR TP  +S++ QNRLN  TSSPST
Sbjct: 243  SSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPST 302

Query: 356  MDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGG 415
            MDLLAVLS+TL A +PD LA  SQRSS SSDSEKT                         
Sbjct: 303  MDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKT------------------------- 337

Query: 416  ERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEER 475
                 +YQSP+EDSD Q                              YFSSDSSNP+EER
Sbjct: 338  -----NYQSPMEDSDCQ------------------------------YFSSDSSNPMEER 362

Query: 476  SPSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAAD 534
            SPSSSP VVQ                                                AD
Sbjct: 363  SPSSSPPVVQKL---------------------------------------------GAD 377

Query: 535  NCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNW 594
            N + QSFPYQAGYTSSSGSDHSPSSLNSDAQD TGRIIFKLFDKDPS FPGTLR EIYNW
Sbjct: 378  NGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNW 437

Query: 595  LSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLV 654
            L++SPSEMESYIRPGCV+LS+Y SM  A WEQLE NLL R+NSLVQDSDSDFWRN RFLV
Sbjct: 438  LAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLV 497

Query: 655  HTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHC 714
            HTG++LASHKDG IR+CKSWRTW+SPELISVSPLAVVGGQE SF L+GRNL N GTKIHC
Sbjct: 498  HTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKIHC 557

Query: 715  TFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIA 774
            T+MGGY S+EV     QG++YDEI     KI D  PSVLGR FIEVENGF+GNSFPVI+A
Sbjct: 558  TYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVA 617

Query: 775  DATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASS 834
            DATICKEL LLESEF  EAKV                SREEVLHFLNELGWLFQRK   S
Sbjct: 618  DATICKELRLLESEFDEEAKV----------------SREEVLHFLNELGWLFQRK--FS 659

Query: 835  IVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLN 894
            ++ G DYSL+RFKFL  FSV+R CCALVK +LDILVE NL  DGLS +SLE L E+QLL+
Sbjct: 660  MLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLS 719

Query: 895  RAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDAL 954
            RAVK + R+MVDLLIHYS+ SS  + +KYIFPPNL G GGITPLHLAACT+ SDDIIDAL
Sbjct: 720  RAVKRRYRKMVDLLIHYSVASS--SSKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDAL 777

Query: 955  TNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIE 1014
            T+DPQEIG  SWNS+LDASG SPY+YA+M+NNH+YN+LVARKLADRRNGQV++ +   +E
Sbjct: 778  TSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENAME 837

Query: 1015 Q--SGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAV 1072
            Q    + +EQ       F Q   SC KCAV AAK ++R+ GSQGLL+RPYIHSMLAIAAV
Sbjct: 838  QPWPKVGQEQ------HFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAV 891

Query: 1073 CVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            CVCVCLFLRGSPDIGLVAPFKWENLD+G
Sbjct: 892  CVCVCLFLRGSPDIGLVAPFKWENLDYG 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455740|ref|XP_004145609.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Cucumis sativus]

 Score = 1211 bits (3134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1107 (59%), Positives = 786/1107 (71%), Gaps = 85/1107 (7%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPK 60
            M++ GAQV P I +HQ L+SR  + P++       KKR LSY  Q Q H       WNPK
Sbjct: 1    MDDPGAQVVPPIFIHQSLTSRYTDLPSI------PKKRPLSYH-QGQLH----PHTWNPK 49

Query: 61   LWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAV 120
             WDWDS  F+ KP                         N+N           NTT     
Sbjct: 50   AWDWDSSKFLTKP------------------------SNLN-----------NTTLD--- 71

Query: 121  TVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKE 180
                 + D  L LNLGG      VE P      SKP K+VR GSP +  YPMCQVDNCKE
Sbjct: 72   -----DHDDTLRLNLGGRY----VEDP-----VSKPPKKVRPGSPASVTYPMCQVDNCKE 117

Query: 181  DLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGH 240
            DLSNAKDYHRRHKVCELHSKS+KALV KQMQRFCQQCSRFHPLSEFD+GKRSCRRRLAGH
Sbjct: 118  DLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGH 177

Query: 241  NRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPD 300
            N RRRKTQPED+TSR+     G++    T N+DIV+LLT LARAQGK ED+S+      +
Sbjct: 178  NWRRRKTQPEDVTSRLT--RPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSAN 235

Query: 301  REQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLA 360
             +QL+ IL+KINSLPLPADLAAKL N  +   K P  +S   QN+LN N SSPSTMDLL 
Sbjct: 236  SDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLT 295

Query: 361  VLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSST 420
            VLS+TL A +PD LA  SQ+SS SSDSEKT+S+CP  +    L+   ++ PSVGGERSST
Sbjct: 296  VLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSD---LQNRPLELPSVGGERSST 352

Query: 421  SYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSS 480
            SYQSP+EDSDGQ Q TRV LPLQLF SSPE D+PP L++SRKYFSSDSSNPIEERSPSSS
Sbjct: 353  SYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSS 412

Query: 481  P-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQ 539
            P ++QT FP+QST ET  + K+ I +EVN  VE  +   S +P ELFR  + A  N SFQ
Sbjct: 413  PPLLQTLFPVQSTEETTSNGKMPIRKEVNG-VEVRKPPSSNIPFELFRELDGARPN-SFQ 470

Query: 540  SFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSP 599
            +  YQAGYTSS       SSLNSDAQD TGRI FKLF+KDPSQFPGTLR +IYNWLSN P
Sbjct: 471  TIHYQAGYTSSGSDHSP-SSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCP 529

Query: 600  SEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQ 659
            SEMESYIRPGCV+LS+Y+SM    WE+LE NL+  + SLV   + DFWR+ RFLV+TG+Q
Sbjct: 530  SEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQ 589

Query: 660  LASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGG 719
            LASHKDG I + KS + WS+PEL SVSPLAVV GQ+ SF LRGRNL   GT+IHCT MGG
Sbjct: 590  LASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGG 649

Query: 720  YASQEVTSSTCQG----SIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIAD 775
            Y S+EV   +  G     IYDEI     K+ D SP+ LGR FIEVENGF+GNSFPVIIAD
Sbjct: 650  YISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIAD 709

Query: 776  ATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSI 835
            ATIC+EL  LES+F  E KV D   E  +    +PR R+E+L FLNELGWLFQR+R S  
Sbjct: 710  ATICRELRHLESDFD-EFKVPDSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYE 768

Query: 836  VKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
            +   D+ + RF+FLL FS +R  CALVK +LDIL +  L  DGLS +SLEM+ E+QLLNR
Sbjct: 769  LDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNR 828

Query: 896  AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
            +VK +CR+MVDLL+HY ++   D+ +KY+FPPN  GPGGITPLHLAA  +D+++++DALT
Sbjct: 829  SVKRRCRQMVDLLVHYHVSGVGDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALT 888

Query: 956  NDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQ 1015
            NDP EIG   W+S LD SG SP +YALM+ NH  N+LV RKLADR+NGQV++ +G EIEQ
Sbjct: 889  NDPLEIGLECWSSQLDESGRSPQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQ 948

Query: 1016 SGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVC 1073
              ++  +      + + +G+SC++CAV AA+ N+RV GS    LL+RPYIHSMLAIAAVC
Sbjct: 949  LEVSSGE------RGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVC 1002

Query: 1074 VCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            VCVCLFLRGSPDIGLVAPFKWENL +G
Sbjct: 1003 VCVCLFLRGSPDIGLVAPFKWENLGYG 1029

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531663|ref|XP_004172805.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 14-like [Cucumis sativus]

 Score = 1207 bits (3122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1107 (59%), Positives = 784/1107 (70%), Gaps = 85/1107 (7%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPK 60
            M++ GAQV P I +HQ L+SR  + P++       KKR LSY  Q Q H       WNPK
Sbjct: 1    MDDPGAQVVPPIFIHQSLTSRYTDLPSI------PKKRPLSYH-QGQLH----PHTWNPK 49

Query: 61   LWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAV 120
             WDWDS  F+ KP                         N+N           NTT     
Sbjct: 50   AWDWDSSKFLTKP------------------------SNLN-----------NTTLD--- 71

Query: 121  TVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKE 180
                 + D  L LNLGG      VE P      SKP K+VR GSP +  YPMCQVDNCKE
Sbjct: 72   -----DHDDTLRLNLGGRY----VEDP-----VSKPPKKVRPGSPASVTYPMCQVDNCKE 117

Query: 181  DLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGH 240
            DLSNAKDYHRRHKVCELHSKS+KALV KQMQRFCQQCSRFHPLSEFD+GKRSCRRRLAGH
Sbjct: 118  DLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGH 177

Query: 241  NRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPD 300
            N RRRKTQPED+TSR+     G++    T N+DIV+LLT LARAQGK ED+S+      +
Sbjct: 178  NWRRRKTQPEDVTSRLT--RPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSAN 235

Query: 301  REQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLA 360
             +QL+ IL+KINSLPLPADLAAKL N  +   K P  +S   QN+LN N SSPSTMDLL 
Sbjct: 236  SDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLT 295

Query: 361  VLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSST 420
            VLS+TL A +PD LA  SQ+SS SSDSEK +S+CP  +    L+   ++ PSVGGERSST
Sbjct: 296  VLSATLAASAPDALAMLSQKSSVSSDSEKXRSSCPSGSD---LQNRPLELPSVGGERSST 352

Query: 421  SYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSS 480
            SYQSP+EDSDGQ Q TRV LPLQLF SSPE D+PP L++SRKYFSSDSSNPIEERSPSSS
Sbjct: 353  SYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSS 412

Query: 481  P-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQ 539
            P ++QT FP+QST ET  + K+ I +EVN  VE  +   S +P ELFR  + A  N SFQ
Sbjct: 413  PPLLQTLFPVQSTEETTSNGKMPIRKEVNG-VEVRKPPSSNIPFELFRELDGARPN-SFQ 470

Query: 540  SFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSP 599
            +  YQAGYTSS       SSLNSDAQD TGRI FKLF+KDPSQFPGTLR +IYNWLSN P
Sbjct: 471  TIHYQAGYTSSGSDHSP-SSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCP 529

Query: 600  SEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQ 659
            SEMESYIRPGCV+LS+Y+SM    WE+LE NL+  + SLV   + DFWR+ RFLV+TG+Q
Sbjct: 530  SEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQ 589

Query: 660  LASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGG 719
            LASHKDG I + KS + WS+PEL SVSPLAVV GQ+ SF LRGRNL   GT+IHCT MGG
Sbjct: 590  LASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGG 649

Query: 720  YASQEVTSSTCQG----SIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIAD 775
            Y S+EV   +  G     IYDEI     K+ D SP+ LGR FIEVENGF+GNSFPVIIAD
Sbjct: 650  YISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIAD 709

Query: 776  ATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSI 835
            ATIC+EL  LES+F  E KV D   E  +    +PR R+E+L FLNELGWLFQR+R S  
Sbjct: 710  ATICRELRHLESDFD-EFKVPDSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYE 768

Query: 836  VKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
            +   D+ + RF+FLL FS +R  CALVK +LDIL +  L  DGLS +SLEM+ E+QLLNR
Sbjct: 769  LDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNR 828

Query: 896  AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
            +V  +CR+MVDLL+HY ++   D+ +KY+FPPN  GPGGITPLHLAA  +D+++++DALT
Sbjct: 829  SVXRRCRQMVDLLVHYHVSGVGDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALT 888

Query: 956  NDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQ 1015
            NDP EIG   W+S LD SG SP +YALM+ NH  N+LV RKLADR+NGQV++ +G EIEQ
Sbjct: 889  NDPLEIGLECWSSQLDESGRSPQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQ 948

Query: 1016 SGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGS--QGLLNRPYIHSMLAIAAVC 1073
              ++  +      + + +G+SC++CAV AA+ N+RV GS    LL+RPYIHSMLAIAAVC
Sbjct: 949  LEVSSGE------RGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVC 1002

Query: 1074 VCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            VCVCLFLRGSPDIGLVAPFKWENL +G
Sbjct: 1003 VCVCLFLRGSPDIGLVAPFKWENLGYG 1029

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574155|ref|XP_003555217.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max]

 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1082 (58%), Positives = 749/1082 (69%), Gaps = 96/1082 (8%)

Query: 32   MTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASE 91
            + M +KR LSY   S         +W+   WDWDSV F GKP     P  L         
Sbjct: 9    ILMHRKRDLSYAVVSP----APNPSWS---WDWDSVRFAGKP-----PPPL--------S 48

Query: 92   SPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPV 151
            SPN   D++ +  +                         L LNLGG              
Sbjct: 49   SPN---DDVVFEESVAPP---------------------LQLNLGGRTN----------- 73

Query: 152  VTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQ 211
              S  NKRVRSGSPGT+ YPMCQVDNC+EDLS AKDYHRRHKVCE HSK++KAL+  QMQ
Sbjct: 74   -NSNSNKRVRSGSPGTSSYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQ 132

Query: 212  RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTAN 271
            RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPED+TS          +    AN
Sbjct: 133  RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSAT-------PAPAAAAN 185

Query: 272  VDIVNLLTALARA-QGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSL 330
            ++I +LLTA+A A QGK E++    S VP REQL+ IL++I   PLPADLA KL + GS 
Sbjct: 186  LEIFDLLTAIAGASQGKFEEKR---SQVPVREQLVQILNRI---PLPADLATKLLDAGSG 239

Query: 331  N---RKTPVHTST-------DVQNRLNENTSSPSTMDLLAVLSSTLTAPS-PDTLAAHSQ 379
            N   +K  V   T       +  ++LN   ++P TMDLLAVLS+TL+  S PD  A+ SQ
Sbjct: 240  NVNGKKDQVQLQTPSSYQRHESHDQLNHTPAAPLTMDLLAVLSTTLSGGSAPDASASPSQ 299

Query: 380  RSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVN 439
              S +SD      T  +Q            F SVGGERSS+S +SPVEDSD Q ++ RVN
Sbjct: 300  NHSCNSDGGSADQTRQQQ------------FFSVGGERSSSSSRSPVEDSDCQ-EDVRVN 346

Query: 440  LPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSE 499
            LPLQLFSSSPEDDS PKL+SSRKYFSSDSSNP EERSPSSSPVV+  F +Q  +  +K E
Sbjct: 347  LPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPVVEMLFDLQGGARGLKPE 406

Query: 500  KLSIGREVNANVEGNRSRGSIMPLELFRGSN-KAADNCSFQSFPYQAGYTSSSGSDHSPS 558
             +S GREV AN E ++S  S + L+LF+GSN +     S QS P+QAGYTSS GSDHSP 
Sbjct: 407  SISSGREVIANKEASQSHSSNISLDLFKGSNNRIQQPSSLQSVPFQAGYTSS-GSDHSPP 465

Query: 559  SLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVS 618
            SLNSDAQD TGRI+FKLFDK PS FPGTLR +IYNWLSN PS+MESYIRPGCV+LS+Y S
Sbjct: 466  SLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIYAS 525

Query: 619  MPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWS 678
            M  A WE+LE N LQ ++SL+Q+SDSDFWRN RFLVH+G Q  SHKDG IR+CK WRTW 
Sbjct: 526  MSSADWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQFVSHKDGKIRICKPWRTWK 585

Query: 679  SPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEI 738
            SPELISVSPLA+V G E S  L+GRNL+  GTKIHCT  G YAS EV  S   G +YD+I
Sbjct: 586  SPELISVSPLAIVSGHETSISLKGRNLSTPGTKIHCTGTGSYASAEVIGSAYSGVMYDKI 645

Query: 739  ILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDV 798
             L+  K+QD S  VLGR FIEVENGFKGNSFPVIIAD TICKEL  LESEF  E K+CD 
Sbjct: 646  KLSAFKVQDVSHGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKICDA 705

Query: 799  ISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGC 858
            ISE   H +GRPRSREE LHFLNELGWLFQR+R S + +   YSL RFKF+L F+V+R C
Sbjct: 706  ISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPYYSLDRFKFVLTFAVERNC 765

Query: 859  CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND 918
            C LVK +LD+LV  +L  + LS  S+EML  IQLLNRAVK K   MVDLLIHYS+ S N 
Sbjct: 766  CMLVKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSKNG 825

Query: 919  TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPY 978
            T +KY+FPPNL GPGGITPLHLAA TS S+ ++D+LT+DPQEIG   W S++DA+G +P+
Sbjct: 826  TSRKYVFPPNLEGPGGITPLHLAAGTSGSESVVDSLTSDPQEIGLKCWESLVDANGQTPH 885

Query: 979  SYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKSCT 1038
            +YA+M+NN +YN LVA KLADRR G++++ +   IEQ  L  E     S+  K+   SC 
Sbjct: 886  AYAMMRNNDSYNALVAHKLADRRRGEISVTIENAIEQQSLRVELKEKQSNLVKRGQSSCA 945

Query: 1039 KCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLD 1098
            KCA A  + N+RV GS GLL+RP+I+SMLA+AAVCVCVC+F RG P +G VAPF WENLD
Sbjct: 946  KCANAEFRFNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWENLD 1005

Query: 1099 FG 1100
            +G
Sbjct: 1006 YG 1007

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523388|ref|XP_003530322.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max]

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1084 (58%), Positives = 752/1084 (69%), Gaps = 90/1084 (8%)

Query: 32   MTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASE 91
            + M +KR LSY   S     G  ++W    W+WDSV F GKP                  
Sbjct: 9    ILMHRKRDLSYDIVS----AGPNESWR---WEWDSVRFAGKPP------------PPPPL 49

Query: 92   SPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPV 151
            SPN                  N     A +V        L L LGG             +
Sbjct: 50   SPN------------------NDVVFEAESVVPP-----LQLKLGG-----TTRVNNNNI 81

Query: 152  VTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQ 211
              +  NKRVRSGSPGTA YPMCQVDNC+EDLS AKDYHRRHKVCE HSK++KAL+  QMQ
Sbjct: 82   NINVSNKRVRSGSPGTASYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQ 141

Query: 212  RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTAN 271
            RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPED+TS          +    AN
Sbjct: 142  RFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSAT-------PAPAAAAN 194

Query: 272  VDIVNLLTALARA-QGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSL 330
            ++I NLLTA+A A QGK E++    S V DREQL+ IL+KI   PLPADLA KL + GS 
Sbjct: 195  LEIFNLLTAIAGASQGKFEEKR---SQVSDREQLVQILNKI---PLPADLATKLLDAGSG 248

Query: 331  N---RKTPVHTST--------DVQNRLNENTSSPSTMDLLAVLSSTLTA-PSPDTLAAHS 378
            N   +K  V   T        +  + LN   ++P TMDLLAVLS+TL+   +PD+ A+ S
Sbjct: 249  NVNGKKDHVQLQTPSSSYQCHESHDLLNHTPAAPLTMDLLAVLSTTLSGGSAPDSSASPS 308

Query: 379  QRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRV 438
            Q  S SSD      T  +Q            F SVGGERSS+S QSPVEDSD Q  E RV
Sbjct: 309  QNRSCSSDGGSADQTRQQQ------------FFSVGGERSSSSSQSPVEDSDCQ--EVRV 354

Query: 439  NLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSP-VVQTFFPMQSTSETVK 497
            NLPLQLFSSSPEDDS PKL+SSRKYFSSDSSNP EERSPSSSP +V+  F +Q  +  +K
Sbjct: 355  NLPLQLFSSSPEDDSLPKLASSRKYFSSDSSNPAEERSPSSSPPIVEMQFDLQDGARGLK 414

Query: 498  SEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADN-CSFQSFPYQAGYTSSSGSDHS 556
             E +S GR VNAN E ++S  S + L+LF+GSN       S QS P+QAGYTSS GSDHS
Sbjct: 415  PESISSGRGVNANKEASQSHSSNISLDLFKGSNNWIQQPSSLQSVPFQAGYTSS-GSDHS 473

Query: 557  PSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLY 616
            P SLNSDAQD TGRI+FKLFDK PS FPGTLR +IYNWLSN PS+MESYIRPGCV+LS+Y
Sbjct: 474  PPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRAQIYNWLSNRPSDMESYIRPGCVVLSIY 533

Query: 617  VSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRT 676
             SM  A WE+LE N LQ ++SL+Q+SDSDFWRN RFLVH+G +L SHKDG IR+CK WRT
Sbjct: 534  ASMSSADWERLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSRLVSHKDGKIRICKPWRT 593

Query: 677  WSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYD 736
            W SPELISVSPLA+V GQE S  L+GRNL+ LGTKIHCT  G YAS EV  S   G +YD
Sbjct: 594  WKSPELISVSPLAIVSGQETSISLKGRNLSTLGTKIHCTGTGSYASAEVIGSAHSGVMYD 653

Query: 737  EIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVC 796
            +I L+G K+QD SP VLGR FIEVENGFKGNSFPVIIAD TICKEL  LESEF  E K+C
Sbjct: 654  KIKLSGFKVQDVSPGVLGRCFIEVENGFKGNSFPVIIADETICKELRPLESEFDEEEKIC 713

Query: 797  DVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDR 856
            D ISE   H +GRPRSREE LHFLNELGWLFQR+R S + +   YSL RFKF+L+F+V+R
Sbjct: 714  DAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPCYSLDRFKFVLIFAVER 773

Query: 857  GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS 916
             CC L+K +LD+LV  +L  + LS  S+EML  IQLLNRAVK K   MVDLLIHYS+ S 
Sbjct: 774  NCCMLIKTLLDVLVGKHLQGEWLSTGSVEMLNAIQLLNRAVKGKYVGMVDLLIHYSIPSK 833

Query: 917  NDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHS 976
            N T +KY+FPPNL GPGGITPLHLAACTS S+ ++D+LT+DPQEIG   W S++DA+G S
Sbjct: 834  NGTSRKYVFPPNLEGPGGITPLHLAACTSGSESVVDSLTSDPQEIGLKCWESLVDANGQS 893

Query: 977  PYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQFKQRGKS 1036
            P++YA+M+NN +YN LVARKLADR+ G++++ +   IEQ  L  E     S   K+   S
Sbjct: 894  PHAYAMMRNNDSYNALVARKLADRQRGEISVTIANAIEQQSLRVELKQKQSYLVKRGQSS 953

Query: 1037 CTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWEN 1096
            C KCA A  + N+RV GS GLL+RP+I+SMLA+AAVCVCVC+F RG P +G VAPF WEN
Sbjct: 954  CAKCANAEIRYNRRVPGSHGLLHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWEN 1013

Query: 1097 LDFG 1100
            LD+G
Sbjct: 1014 LDYG 1017

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845078|ref|XP_002890420.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] gi|297336262|gb|EFH66679.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata]

 Score = 1123 bits (2904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1110 (56%), Positives = 772/1110 (69%), Gaps = 82/1110 (7%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQ-----AQSQNHYGGEQQ 55
            M+EVGAQVA  + +H                  M KKR L Y       QSQ        
Sbjct: 1    MDEVGAQVAAPMFIHH----------------PMGKKRDLYYPMSNRLVQSQ----PRSD 40

Query: 56   NWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTT 115
             WN K+WDWDS  F  KPV   D EVLRLG                           N  
Sbjct: 41   EWNSKMWDWDSRRFEAKPV---DVEVLRLG---------------------------NEA 70

Query: 116  TTSAVTVGNVEDDGR-LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQ 174
                +T+ N   + R LDLNLG GLTAV+ +         +P+K+VRSGSPG   YPMCQ
Sbjct: 71   QEFDLTLRNRSGEERGLDLNLGSGLTAVE-DLTTTTTQNGRPSKKVRSGSPG-GNYPMCQ 128

Query: 175  VDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCR 234
            VDNC EDLS+AKDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRSCR
Sbjct: 129  VDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCR 188

Query: 235  RRLAGHNRRRRKT-QPEDITSRMLIHGHGNQSNNPTAN-VDIVNLLTALARAQGKTEDRS 292
            RRLAGHNRRRRKT QPE++ S +++ G+ + +NN +   +D++ LLTALA AQGK   + 
Sbjct: 189  RRLAGHNRRRRKTTQPEEVASGVVVPGNRDNNNNTSTTNMDLMALLTALACAQGKNAVKP 248

Query: 293  ISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSS 352
                +VPDREQLL IL+KIN+LPLP DL +KL+N GSL RK   H + + QN +N   +S
Sbjct: 249  AGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMN--GAS 306

Query: 353  PSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPS 412
            PSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK +  E      L++ T  F S
Sbjct: 307  PSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYEHGVTTNLEKRTFGFSS 366

Query: 413  VGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPI 472
            VGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED+S P ++SSRKY+SS SSNP 
Sbjct: 367  VGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASSNPA 426

Query: 473  EERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKA 532
            E+RSPSSSPV+Q  FP+Q++ ET++S+          N      R   +PLELF  SN+ 
Sbjct: 427  EDRSPSSSPVMQELFPLQTSPETMRSK----------NHNNTSPRTGCLPLELFGASNRG 476

Query: 533  ADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIY 592
            A N +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I+FKL DKDPSQ PGTLR EIY
Sbjct: 477  AANPNFKGFRQQSGY-ASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRSEIY 535

Query: 593  NWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARF 652
            NWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE NLLQR+  L+Q+S SDFWRNARF
Sbjct: 536  NWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQNLLQRLGVLLQNSSSDFWRNARF 595

Query: 653  LVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKI 712
            +V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV G+E S  +RGR+LTN G  I
Sbjct: 596  IVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDGISI 655

Query: 713  HCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVI 772
             CT MG Y S +VT + C+ +I+D++ +   K+Q+  P  LGR FIEVENGF+G+SFP+I
Sbjct: 656  RCTHMGSYMSMDVTGAVCRQAIFDKLNVDSFKVQNVHPGFLGRCFIEVENGFRGDSFPLI 715

Query: 773  IADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRA 832
            IA+ +IC EL+ LE EF  +++  D+  E        P SREEVL FLNELGWLFQ+ + 
Sbjct: 716  IANESICNELNRLEEEFHPKSQ--DMTEEPAQSSNRGPTSREEVLCFLNELGWLFQKNQT 773

Query: 833  SSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQL 892
            S   + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE NL  D L+RE+LEML EIQL
Sbjct: 774  SEPREQSDFSLTRFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALEMLAEIQL 833

Query: 893  LNRAVKMKCRRMVDLLIHYSLT-SSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDII 951
            LNRAVK K  +MV+LLIHYS+  S+  + +K++F PN  GPGGITPLH+AACTS SDD+I
Sbjct: 834  LNRAVKRKSTKMVELLIHYSVNPSALSSFKKFVFLPNRTGPGGITPLHIAACTSGSDDMI 893

Query: 952  DALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGV 1011
            D LTNDPQEIG SSWN++ DA+G +PYSYA M+NNH YN LVARKLAD+RN QV++ +  
Sbjct: 894  DLLTNDPQEIGLSSWNTLCDATGQTPYSYAAMRNNHNYNSLVARKLADKRNRQVSLNIEN 953

Query: 1012 EI-EQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIA 1070
            EI +Q+GL+K     LSS+   +  +C  CA  A K  +RV GS  L   P IHSMLA+A
Sbjct: 954  EIVDQTGLSKR----LSSEM-NKSSTCASCATVALKYQRRVSGSHRLFPTPIIHSMLAVA 1008

Query: 1071 AVCVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
             VCVCVC+F+   P +   + F W  LD+G
Sbjct: 1009 TVCVCVCVFMHAFPIVRQGSHFSWGGLDYG 1038

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218091|ref|NP_173522.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana] gi|67461574|sp|Q8RY95.3|SPL14_ARATH RecName: Full=Squamosa promoter-binding-like protein 14; AltName: Full=Protein FUMONISIN B1-RESISTANT 6; AltName: Full=SPL1-related protein 2 gi|4836890|gb|AAD30593.1|AC007369_3 Unknown protein [Arabidopsis thaliana] gi|332191929|gb|AEE30050.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana]

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1118 (55%), Positives = 781/1118 (69%), Gaps = 103/1118 (9%)

Query: 1    MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-------QAQSQNHYGGE 53
            M+EVGAQVA  + +HQ                ++ +KR L Y       Q+Q Q      
Sbjct: 1    MDEVGAQVAAPMFIHQ----------------SLGRKRDLYYPMSNRLVQSQPQ-----R 39

Query: 54   QQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGN 113
            +  WN K+WDWDS  F  KPV   D EV                                
Sbjct: 40   RDEWNSKMWDWDSRRFEAKPV---DVEVQEFD---------------------------- 68

Query: 114  TTTTSAVTVGNVEDDGR-LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPM 172
                  +T+ N   + R LDLNLG GLTAV+        V  +PNK+VRSGSPG   YPM
Sbjct: 69   ------LTLRNRSGEERGLDLNLGSGLTAVEETTTTTQNV--RPNKKVRSGSPG-GNYPM 119

Query: 173  CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
            CQVDNC EDLS+AKDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRS
Sbjct: 120  CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query: 233  CRRRLAGHNRRRRKT-QPEDITSRMLIHGHGNQSNN-PTANVDIVNLLTALARAQGKTED 290
            CRRRLAGHNRRRRKT QPE++ S +++ G+ + +NN   AN+D++ LLTALA AQGK   
Sbjct: 180  CRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDLMALLTALACAQGKNAV 239

Query: 291  RS-ISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNEN 349
            +  +   +VPDREQLL IL+KIN+LPLP DL +KL+N GSL RK   H + + QN +N  
Sbjct: 240  KPPVGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMN-- 297

Query: 350  TSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMD 409
             +SPSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK +  E      L++ T  
Sbjct: 298  GASPSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYENGVTTNLEKRTFG 357

Query: 410  FPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSS 469
            F SVGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED+S P ++SSRKY+SS SS
Sbjct: 358  FSSVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASS 417

Query: 470  NPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGS 529
            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+          N + +  R   +PLELF  S
Sbjct: 418  NPVEDRSPSSSPVMQELFPLQASPETMRSK----------NHKNSSPRTGCLPLELFGAS 467

Query: 530  NKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRK 589
            N+ A + +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I+FKL DKDPSQ PGTLR 
Sbjct: 468  NRGAADPNFKGFGQQSGY-ASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRS 526

Query: 590  EIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRN 649
            EIYNWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE  LLQR+  L+Q+S SDFWRN
Sbjct: 527  EIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRN 586

Query: 650  ARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLG 709
            ARF+V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV G+E S  +RGR+LTN G
Sbjct: 587  ARFIVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDG 646

Query: 710  TKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSF 769
              I CT MG Y + EVT + C+ +I+DE+ +   K+Q+  P  LGR FIEVENGF+G+SF
Sbjct: 647  ISIRCTHMGSYMAMEVTRAVCRQTIFDELNVNSFKVQNVHPGFLGRCFIEVENGFRGDSF 706

Query: 770  PVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR-PRSREEVLHFLNELGWLFQ 828
            P+IIA+A+ICKEL+ L  EF  +++    ++E QA    R P SREEVL FLNELGWLFQ
Sbjct: 707  PLIIANASICKELNRLGEEFHPKSQ---DMTEEQAQSSNRGPTSREEVLCFLNELGWLFQ 763

Query: 829  RKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLW 888
            + + S + + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE NL  D L+RE+L+ML 
Sbjct: 764  KNQTSELREQSDFSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLA 823

Query: 889  EIQLLNRAVKMKCRRMVDLLIHY-----SLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC 943
            EIQLLNRAVK K  +MV+LLIHY     +L+SS    +K++F PN+ GPGGITPLHLAAC
Sbjct: 824  EIQLLNRAVKRKSTKMVELLIHYLVNPLTLSSS----RKFVFLPNITGPGGITPLHLAAC 879

Query: 944  TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNG 1003
            TS SDD+ID LTNDPQEIG SSWN++ DA+G +PYSYA ++NNH YN LVARKLAD+RN 
Sbjct: 880  TSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNK 939

Query: 1004 QVTIPVGVE-IEQSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPY 1062
            QV++ +  E ++Q+GL+K     LS +  +   SC  CA  A K  +RV GSQ L   P 
Sbjct: 940  QVSLNIEHEVVDQTGLSKR----LSLEMNKSSSSCASCATVALKYQRRVSGSQRLFPTPI 995

Query: 1063 IHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDFG 1100
            IHSMLA+A VCVCVC+F+   P +   + F W  LD+G
Sbjct: 996  IHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGLDYG 1033

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.849	0.904	0.555	3.3e-281
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.839	0.936	0.526	1.8e-251
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.486	0.608	0.324	3.5e-109
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.460	0.548	0.343	5.7e-107
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.095	0.292	0.485	7.9e-23
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.095	0.292	0.485	7.9e-23
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.072	0.240	0.578	6e-20
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.071	0.436	0.569	2.1e-19
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.081	0.227	0.521	6e-18
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.067	0.425	0.569	6.5e-18

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 2629 (930.5 bits), Expect = 3.3e-281, Sum P(2) = 3.3e-281
 Identities = 535/963 (55%), Positives = 674/963 (69%)

Query:   144 VEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTK 203
             VE+        +PNK+VRSGSPG   YPMCQVDNC EDLS+AKDYHRRHKVCE+HSK+TK
Sbjct:    92 VEETTTTTQNVRPNKKVRSGSPG-GNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATK 150

Query:   204 ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKT-QPEDITSRMLIHG-H 261
             ALVGKQMQRFCQQCSRFH LSEFDEGKRSC            KT QPE++ S +++ G H
Sbjct:   151 ALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGVVVPGNH 210

Query:   262 GNQSNNPTANVDIVNLLTALARAQGKTEDRS-ISCSSVPDREQLLMILSKINSLPLPADL 320
                +N   AN+D++ LLTALA AQGK   +  +   +VPDREQLL IL+KIN+LPLP DL
Sbjct:   211 DTTNNTANANMDLMALLTALACAQGKNAVKPPVGSPAVPDREQLLQILNKINALPLPMDL 270

Query:   321 AAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHXXX 380
              +KL+N GSL RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA     
Sbjct:   271 VSKLNNIGSLARKNMDHPTVNPQNDMNG--ASPSTMDLLAVLSTTLGSSSPDALAILSQG 328

Query:   381 XXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNL 440
                            E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +L
Sbjct:   329 GFGNKDSEKTKLSSYENGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388

Query:   441 PLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQSTSETVKSEK 500
              LQLF+SSPED+S P +            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+ 
Sbjct:   389 SLQLFTSSPEDESRPTVASSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETMRSK- 447

Query:   501 LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTXXXXXXXXXXXX 560
                      N + +  R   +PLELF  SN+ A + +F+ F  Q+GY             
Sbjct:   448 ---------NHKNSSPRTGCLPLELFGASNRGAADPNFKGFGQQSGYASSGSDYSPPSLN 498

Query:   561 XXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 620
               DAQD TG+I+FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M 
Sbjct:   499 S-DAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAMS 557

Query:   621 YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 680
              A WEQLE  LLQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+SP
Sbjct:   558 PAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNSP 617

Query:   681 ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIIL 740
             ELISVSP+AVV G+E S  +RGR+LTN G  I CT MG Y + EVT + C+ +I+DE+ +
Sbjct:   618 ELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAMEVTRAVCRQTIFDELNV 677

Query:   741 AGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVIS 800
                K+Q+  P  LGR FIEVENGF+G+SFP+IIA+A+ICKEL+ L  EF  +++  D+ +
Sbjct:   678 NSFKVQNVHPGFLGRCFIEVENGFRGDSFPLIIANASICKELNRLGEEFHPKSQ--DM-T 734

Query:   801 EHQAHEYGR-PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCC 859
             E QA    R P SREEVL FLNELGWLFQ+ + S + + SD+SL+RFKFLLV SV+R  C
Sbjct:   735 EEQAQSSNRGPTSREEVLCFLNELGWLFQKNQTSELREQSDFSLARFKFLLVCSVERDYC 794

Query:   860 ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN-D 918
             AL++ +LD+LVE NL  D L+RE+L+ML EIQLLNRAVK K  +MV+LLIHY +      
Sbjct:   795 ALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNPLTLS 854

Query:   919 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPY 978
             + +K++F PN+ GPGGITPLHLAACTS SDD+ID LTNDPQEIG SSWN++ DA+G +PY
Sbjct:   855 SSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPY 914

Query:   979 SYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEI-EQSGLAKEQVHGLSSQFKQRGKSC 1037
             SYA ++NNH YN LVARKLAD+RN QV++ +  E+ +Q+GL+K     LS +  +   SC
Sbjct:   915 SYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKR----LSLEMNKSSSSC 970

Query:  1038 TKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENL 1097
               CA  A K  +RV GSQ L   P IHSMLA+A VCVCVC+F+   P +   + F W  L
Sbjct:   971 ASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAFPIVRQGSHFSWGGL 1030

Query:  1098 DFG 1100
             D+G
Sbjct:  1031 DYG 1033

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 2407 (852.4 bits), Expect = 1.8e-251, Sum P(2) = 1.8e-251
 Identities = 511/971 (52%), Positives = 661/971 (68%)

Query:   143 DVEQPEPPVVTSKPNKRVRSGSPGTAP-----YPMCQVDNCKEDLSNAKDYHRRHKVCEL 197
             DVE    PV  ++P+K+VRSGSPG+       YP CQVDNCKEDLS AKDYHRRHKVCE+
Sbjct:    49 DVEGT--PVDLTRPSKKVRSGSPGSGGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEV 106

Query:   198 HSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKTQPEDITSRML 257
             HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRSC            KTQP+ ITS+++
Sbjct:   107 HSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAITSQVV 166

Query:   258 -IHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPL 316
              +    N SNN   N+D++ LLTAL  AQG+ E  +     VP REQLL IL+KI +LPL
Sbjct:   167 ALENRDNTSNN--TNMDVMALLTALVCAQGRNEATTNGSPGVPQREQLLQILNKIKALPL 224

Query:   317 PADLAAKLHNFGSLNRKTPVHTST-DVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLA 375
             P +L +KL+N G L RK P   S  + QN +N   SSPSTMDLLA LS++L + +P+ +A
Sbjct:   225 PMNLTSKLNNIGILARKNPEQPSPMNPQNSMN-GASSPSTMDLLAALSASLGSSAPEAIA 283

Query:   376 --AHXXXXXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGG-ERSSTSYQSPVEDSDGQ 432
               +                     AT + L++ T++FPS GG ER+S++  SP + SD +
Sbjct:   284 FLSQGGFGNKESNDRTKLTSSDHSATTS-LEKKTLEFPSFGGGERTSSTNHSPSQYSDSR 342

Query:   433 NQETRVNLPLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQST 492
              Q+TR +L LQLF+SSPE++S PK+            NP+E+RSPSSSPV+Q  FP+ ++
Sbjct:   343 GQDTRSSLSLQLFTSSPEEESRPKVASSTKYYSSASSNPVEDRSPSSSPVMQELFPLHTS 402

Query:   493 SETVKSEKLSIGREVNANVEGNRS-RGSIMPLELFRGSNKAAD-NCSFQSFPYQAGYTXX 550
              ET         R  N   + + S R S +PLELF  SN+ A  N ++    +Q+GY   
Sbjct:   403 PET---------RRYNNYKDTSTSPRTSCLPLELFGASNRGATANPNYNVLRHQSGYASS 453

Query:   551 XXXXXXXXXXXXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGC 610
                         +AQ+ TG+I FKLF+KDPSQ P TLR EI+ WLS+ PS+MES+IRPGC
Sbjct:   454 GSDYSPPSLNS-NAQERTGKISFKLFEKDPSQLPNTLRTEIFRWLSSFPSDMESFIRPGC 512

Query:   611 VILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRV 670
             VILS+YV+M  + WEQLE NLLQR+ SLVQDS+  FW N+RFLV+ G+QLASHK G IR+
Sbjct:   513 VILSVYVAMSASAWEQLEENLLQRVRSLVQDSE--FWSNSRFLVNAGRQLASHKHGRIRL 570

Query:   671 CKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTC 730
              KSWRT + PELI+VSPLAVV G+E +  +RGRNLTN G ++ C  MG YAS EVT    
Sbjct:   571 SKSWRTLNLPELITVSPLAVVAGEETALIVRGRNLTNDGMRLRCAHMGNYASMEVTGREH 630

Query:   731 QGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFG 790
             + +  DE+ ++  ++Q  S   LGR FIE+ENG +G++FP+IIA+ATICKEL+ LE EF 
Sbjct:   631 RLTKVDELNVSSFQVQSASSVSLGRCFIELENGLRGDNFPLIIANATICKELNRLEEEFH 690

Query:   791 AEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLL 850
              +    DVI E Q     RPRSREEVL FLNELGWLFQRK  S I    D+SL RFKFLL
Sbjct:   691 PK----DVIEE-QIQNLDRPRSREEVLCFLNELGWLFQRKWTSDIHGEPDFSLPRFKFLL 745

Query:   851 VFSVDRGCCALVKAILDILVEGNLSMDGL-SRESLEMLWEIQLLNRAVKMKCRRMVDLLI 909
             V SV+R  C+L++ +LD++VE NL  DGL ++ESL+ML +IQLLNRA+K +  +M + LI
Sbjct:   746 VCSVERDYCSLIRTVLDMMVERNLGKDGLLNKESLDMLADIQLLNRAIKRRNTKMAETLI 805

Query:   910 HYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI 969
             HYS+   N + + +IF P++AGPG ITPLHLAA TS SDD+IDALTNDPQEIG S WN++
Sbjct:   806 HYSV---NPSTRNFIFLPSIAGPGDITPLHLAASTSSSDDMIDALTNDPQEIGLSCWNTL 862

Query:   970 LDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVEIEQSGLAKEQVHGLSSQ 1029
             +DA+G +P+SYA M++NH+YN LVARKLAD+RNGQ+++ +   I+Q GL+K     LSS+
Sbjct:   863 VDATGQTPFSYAAMRDNHSYNTLVARKLADKRNGQISLNIENGIDQIGLSKR----LSSE 918

Query:  1030 FKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCVCVCLFLRGSPDIGLV 1089
              K   +SC  CA  A K  ++V GS+ L   P IHSMLA+A VCVCVC+F+   P +   
Sbjct:   919 LK---RSCNTCASVALKYQRKVSGSRRLFPTPIIHSMLAVATVCVCVCVFMHAFPMVRQG 975

Query:  1090 APFKWENLDFG 1100
             + F W  LD+G
Sbjct:   976 SHFSWGGLDYG 986

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 3.5e-109, Sum P(3) = 3.5e-109
 Identities = 186/574 (32%), Positives = 301/574 (52%)

Query:   539 QSFPYQAGYTXXXXXXXXXXXXXXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNS 598
             QS P Q                  DAQ  TGRI+FKLF K+P++FP  LR +I +WLS+S
Sbjct:   332 QSSPPQTSRNSDSASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHS 391

Query:   599 PSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGK 658
             P++MESYIRPGC++L++Y+      WE+L  +L   +  L+  SD   W      V    
Sbjct:   392 PTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQN 451

Query:   659 QLASHKDGNIRV--CKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTF 716
             QLA   +G + V    S ++     +ISV PLA+   ++  F ++G NL   GT++ C+ 
Sbjct:   452 QLAFVYNGQVVVDTSLSLKSRDYSHIISVKPLAIAATEKAQFTVKGMNLRQRGTRLLCSV 511

Query:   717 MGGYASQEVT--SSTCQGSIYDEI--ILAGLKIQDTSPSVLGRFFIEVEN-GFKGNSFP- 770
              G Y  QE T  S+T +   + +   I+  +      P + GR F+E+E+ G   + FP 
Sbjct:   512 EGKYLIQETTHDSTTREDDDFKDNSEIVECVNFSCDMPILSGRGFMEIEDQGLSSSFFPF 571

Query:   771 VIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQR- 829
             +++ D  +C E+ +LE+                  E+    S ++ + F++E+GWL  R 
Sbjct:   572 LVVEDDDVCSEIRILETTL----------------EFTGTDSAKQAMDFIHEIGWLLHRS 615

Query:   830 KRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE 889
             K   S      + L RF++L+ FS+DR  CA+++ +L++  +G  ++   S  S   L E
Sbjct:   616 KLGESDPNPGVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDG--AVGEFSSSSNATLSE 673

Query:   890 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDD 949
             + LL+RAV+   + MV++L+ Y      ++    +F P+ AGP G+TPLH+AA    S+D
Sbjct:   674 LCLLHRAVRKNSKPMVEMLLRYIPKQQRNS----LFRPDAAGPAGLTPLHIAAGKDGSED 729

Query:   950 IIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPV 1009
             ++DALT DP  +G  +W +  D++G +P  YA ++ + +Y  L+ RK+  +   +  + V
Sbjct:   730 VLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVV 789

Query:  1010 GVEIEQSGLA-KEQVHG-LSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSML 1067
              + +  S    KE   G ++S  +     C  C         R    + +  RP + SM+
Sbjct:   790 NIPVSFSDREQKEPKSGPMASALEITQIPCKLCDHKLVYGTTR----RSVAYRPAMLSMV 845

Query:  1068 AIAAVCVCVCLFLRGSPDIGLV-APFKWENLDFG 1100
             AIAAVCVCV L  +  P++  V  PF+WE LD+G
Sbjct:   846 AIAAVCVCVALLFKSCPEVLYVFQPFRWELLDYG 879

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
 Identities = 192/559 (34%), Positives = 297/559 (53%)

Query:   563 DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYA 622
             DAQ  T RI+FKLF K+P+ FP  LR +I NWL+++P++MESYIRPGC++L++Y+    A
Sbjct:   397 DAQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEA 456

Query:   623 TWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSW--RTWSSP 680
             +WE+L  +L   +  L+  SD   W +    +    QLA   +G + +  S   R+    
Sbjct:   457 SWEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLDTSLPLRSHDYS 516

Query:   681 ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQ--GSIYDEI 738
             ++I+V PLAV   ++  F ++G NL   GT++ CT  G +  QE T    +    + +  
Sbjct:   517 QIITVRPLAVT--KKAQFTVKGINLRRPGTRLLCTVEGTHLVQEATQGGMEERDDLKENN 574

Query:   739 ILAGLKIQDTSPSVLGRFFIEVEN--GFKGNSFPVIIA-DATICKELSLLESEFGAEAKV 795
              +  +      P   GR F+E+E+  G   + FP I++ D  IC E+  LES        
Sbjct:   575 EIDFVNFSCEMPIASGRGFMEIEDQGGLSSSFFPFIVSEDEDICSEIRRLESTL------ 628

Query:   796 CDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSD------YSLSRFKFL 849
                       E+    S  + + F++E+GWL  R    S +  SD      +SL RFKFL
Sbjct:   629 ----------EFTGTDSAMQAMDFIHEIGWLLHRSELKSRLAASDHNPEDLFSLIRFKFL 678

Query:   850 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLI 909
             + FS+DR  C ++K +L+IL E   ++D     +L    E+ LL+RAV+   + MV++L+
Sbjct:   679 IEFSMDREWCCVMKKLLNILFEEG-TVDPSPDAALS---ELCLLHRAVRKNSKPMVEMLL 734

Query:   910 HYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI 969
              +S    N T    +F P+ AGPGG+TPLH+AA    S+D++DALT DP   G  +W + 
Sbjct:   735 RFSPKKKNQTLAG-LFRPDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQAWKNS 793

Query:   970 LDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQ----VTIPVGVEIEQSGLAKEQVHG 1025
              D +G +P  YA ++ + +Y  LV RKL+ +   +    V IP    IE     +  +  
Sbjct:   794 RDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESFNIEHKQEKRSPMDS 853

Query:  1026 LSSQFKQRGKSCTKCAVAAAKLNKRV---RGSQGLLNRPYIHSMLAIAAVCVCVCLFLRG 1082
              S +  Q  + C  C       +KRV      + +  RP + SM+AIAAVCVCV L  + 
Sbjct:   854 SSLEITQINQ-CKLCD------HKRVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLFKS 906

Query:  1083 SPDIGLV-APFKWENLDFG 1100
              P++  V  PF+WE L++G
Sbjct:   907 CPEVLYVFQPFRWELLEYG 925

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.9e-23, P = 7.9e-23
 Identities = 51/105 (48%), Positives = 61/105 (58%)

Query:   148 EPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVG 207
             +P    S  +KR R    GT   P+C VD C  D SN ++YH+RHKVC++HSK+    + 
Sbjct:    76 KPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 135

Query:   208 KQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKTQPEDI 252
                QRFCQQCSRFH L EFDEGKRSC            K QPE I
Sbjct:   136 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHI 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.9e-23, P = 7.9e-23
 Identities = 51/105 (48%), Positives = 61/105 (58%)

Query:   148 EPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVG 207
             +P    S  +KR R    GT   P+C VD C  D SN ++YH+RHKVC++HSK+    + 
Sbjct:    76 KPEGSRSSSSKRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTIN 135

Query:   208 KQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKTQPEDI 252
                QRFCQQCSRFH L EFDEGKRSC            K QPE I
Sbjct:   136 GHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEHI 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 48/83 (57%), Positives = 55/83 (66%)

Query:   154 SKPNKRVRSGSPGTA---PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQM 210
             S+  +R R G  G A     P CQ + C  DLS+AK YHRRHKVCE HSK++  +     
Sbjct:   166 SRLYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLS 225

Query:   211 QRFCQQCSRFHPLSEFDEGKRSC 233
             QRFCQQCSRFH LSEFD GKRSC
Sbjct:   226 QRFCQQCSRFHLLSEFDNGKRSC 248

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 45/79 (56%), Positives = 55/79 (69%)

Query:   155 KPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFC 214
             K  +RVR  S    P  +CQVD C  +L+ AK Y+RRH+VCE+H+K++ A V    QRFC
Sbjct:    45 KVMERVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFC 104

Query:   215 QQCSRFHPLSEFDEGKRSC 233
             QQCSRFH L EFDE KRSC
Sbjct:   105 QQCSRFHELPEFDEAKRSC 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 49/94 (52%), Positives = 61/94 (64%)

Query:   140 TAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHS 199
             +AV +    P VV  K  K    G   +   P CQ+D C+ DLS++KDYHR+H+VCE HS
Sbjct:   147 SAVSMNLLTPSVVARKKTKSC--GQ--SMQVPRCQIDGCELDLSSSKDYHRKHRVCETHS 202

Query:   200 KSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSC 233
             K  K +V    +RFCQQCSRFH +SEFDE KRSC
Sbjct:   203 KCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSC 236

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 45/79 (56%), Positives = 53/79 (67%)

Query:   159 RVRSGSPGT----APYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFC 214
             RVR GS G+        +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFC
Sbjct:    37 RVR-GSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFC 95

Query:   215 QQCSRFHPLSEFDEGKRSC 233
             QQCSRFH L EFDE KRSC
Sbjct:    96 QQCSRFHDLQEFDEAKRSC 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Z8M8	SPL15_ORYSJ	No assigned EC number	0.4666	0.9664	0.9342	yes	no
Q8RY95	SPL14_ARATH	No assigned EC number	0.5563	0.9210	0.9806	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1102
pfam03110	79	pfam03110, SBP, SBP domain	2e-52

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  177 bits (451), Expect = 2e-52
 Identities = 61/79 (77%), Positives = 65/79 (82%)

Query: 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKR 231
            CQV+ C  DLSNAKDYHRRHKVCE+HSK+   LV    QRFCQQCSRFH LSEFDEGKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 232 SCRRRLAGHNRRRRKTQPE 250
           SCRRRLAGHN RRRK QP+
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1102
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.81
PHA02741	169	hypothetical protein; Provisional	99.74
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.73
PHA02791	284	ankyrin-like protein; Provisional	99.73
PHA02791	284	ankyrin-like protein; Provisional	99.7
PHA02743	166	Viral ankyrin protein; Provisional	99.7
PHA02859	209	ankyrin repeat protein; Provisional	99.7
PHA02875	413	ankyrin repeat protein; Provisional	99.7
PHA02736	154	Viral ankyrin protein; Provisional	99.69
PHA02859	209	ankyrin repeat protein; Provisional	99.68
PHA02878	477	ankyrin repeat protein; Provisional	99.67
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.67
PHA02875	413	ankyrin repeat protein; Provisional	99.66
PHA02878	477	ankyrin repeat protein; Provisional	99.66
PHA02874	434	ankyrin repeat protein; Provisional	99.65
PHA02874	434	ankyrin repeat protein; Provisional	99.65
PHA02795	437	ankyrin-like protein; Provisional	99.63
PHA03100	480	ankyrin repeat protein; Provisional	99.62
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.61
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.6
PHA03100	480	ankyrin repeat protein; Provisional	99.6
PHA02989	494	ankyrin repeat protein; Provisional	99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.6
PHA02876	682	ankyrin repeat protein; Provisional	99.58
KOG0510	929	consensus Ankyrin repeat protein [General function	99.58
KOG0514	452	consensus Ankyrin repeat protein [General function	99.58
PHA03095	471	ankyrin-like protein; Provisional	99.57
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.57
PHA02798	489	ankyrin-like protein; Provisional	99.56
PHA02989	494	ankyrin repeat protein; Provisional	99.56
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.55
PHA02795	437	ankyrin-like protein; Provisional	99.55
PHA02876	682	ankyrin repeat protein; Provisional	99.55
PHA03095	471	ankyrin-like protein; Provisional	99.55
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.54
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.54
PHA02946	446	ankyin-like protein; Provisional	99.54
PHA02946	446	ankyin-like protein; Provisional	99.54
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.54
KOG0510	929	consensus Ankyrin repeat protein [General function	99.54
PHA02798	489	ankyrin-like protein; Provisional	99.51
PHA02741	169	hypothetical protein; Provisional	99.5
PHA02917	661	ankyrin-like protein; Provisional	99.49
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.48
KOG0508	615	consensus Ankyrin repeat protein [General function	99.47
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.47
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.46
PHA02730	672	ankyrin-like protein; Provisional	99.44
PHA02730	672	ankyrin-like protein; Provisional	99.43
KOG0514	452	consensus Ankyrin repeat protein [General function	99.41
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.41
PHA02917	661	ankyrin-like protein; Provisional	99.41
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.41
KOG0508	615	consensus Ankyrin repeat protein [General function	99.4
PHA02743	166	Viral ankyrin protein; Provisional	99.39
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
PHA02792	631	ankyrin-like protein; Provisional	99.37
PHA02884	300	ankyrin repeat protein; Provisional	99.37
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.37
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.35
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.34
PHA02736	154	Viral ankyrin protein; Provisional	99.33
PHA02792	631	ankyrin-like protein; Provisional	99.33
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.33
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.32
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.32
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.26
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.21
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.16
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.16
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.11
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.06
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.06
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.02
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.02
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.0
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.96
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.96
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.91
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.84
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.61
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.56
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.36
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.28
KOG0522	560	consensus Ankyrin repeat protein [General function	98.14
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.14
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.94
PF13606	30	Ank_3: Ankyrin repeat	97.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.83
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.68
KOG0522	560	consensus Ankyrin repeat protein [General function	97.64
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.59
PF13606	30	Ank_3: Ankyrin repeat	97.58
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.5
KOG2384	223	consensus Major histocompatibility complex protein	97.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.08
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	96.79
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.55
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.49
KOG0511	516	consensus Ankyrin repeat protein [General function	95.6
KOG2505	591	consensus Ankyrin repeat protein [General function	95.06
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.62
KOG2505	591	consensus Ankyrin repeat protein [General function	94.57
KOG0511	516	consensus Ankyrin repeat protein [General function	93.89
KOG2384	223	consensus Major histocompatibility complex protein	93.86
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	93.81
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	93.81

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=4.8e-35  Score=264.66  Aligned_cols=78  Identities=65%  Similarity=1.119  Sum_probs=63.1

Q ss_pred             CcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCccCccchHHHHHhhHHhhhccCCC
Q 001315          172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP  249 (1102)
Q Consensus       172 ~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~RRrk~~~  249 (1102)
                      +||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999865

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.6e-20  Score=192.39  Aligned_cols=136  Identities=20%  Similarity=0.158  Sum_probs=118.8

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIF  925 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~-GAd~~~gsa~~ylf  925 (1102)
                      |+||||||.-|+.++|++||..   -++.+++.     +. .||||||+|+..|+.++|+-||.. |+            
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddk-----Dd-aGWtPlhia~s~g~~evVk~Ll~r~~a------------   97 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQ---PNVKPDDK-----DD-AGWTPLHIAASNGNDEVVKELLNRSGA------------   97 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhc---CCCCCCCc-----cc-cCCchhhhhhhcCcHHHHHHHhcCCCC------------
Confidence            5999999999999999999984   34655644     34 599999999999999999999988 77            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      +||++..+|.|||||||.+ +..+|+.+|+++      +|.++++|+.|+||||.||..|+.++|++|+...+..    +
T Consensus        98 dvna~tn~G~T~LHyAagK-~r~eIaqlLle~------ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen   98 DVNATTNGGQTCLHYAAGK-GRLEIAQLLLEK------GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             CcceecCCCcceehhhhcC-ChhhHHHHHHhc------CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence            6899999999999999996 666799999998      4679999999999999999999999999999886554    3


Q ss_pred             CCceeeeeC
Q 001315         1002 NGQVTIPVG 1010 (1102)
Q Consensus      1002 ~~~v~l~i~ 1010 (1102)
                      -|+.+|...
T Consensus       171 ~G~TpL~~a  179 (226)
T KOG4412|consen  171 YGFTPLHHA  179 (226)
T ss_pred             cCccHHHHH
Confidence            688877665

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=1.5e-17  Score=167.58  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=108.4

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHH--hccccCCCCChHHHhhhcCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILV--EGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDT  919 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~--~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs----~~IVeLLL~~GAd~~~gs  919 (1102)
                      .+++||+|+..|+.++++.|+..+.  ..+.+++.     .+. .|.||||+|+..|+    .+++++|+++|+      
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~-----~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga------   88 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA-----TDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGA------   88 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc-----cCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCC------
Confidence            3589999999999999999987431  11122221     233 59999999999999    589999999998      


Q ss_pred             CCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          920 PQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       920 a~~ylfdpnakd~-~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                            ++|.++. .|.||||+|+.. +..+++++|+..+     +++++.+|.+|.||||+|...|+.+++++|+++.+
T Consensus        89 ------din~~~~~~g~TpLh~A~~~-~~~~iv~~Ll~~~-----g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         89 ------DINAQEMLEGDTALHLAAHR-RDHDLAEWLCCQP-----GIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             ------CCCCCCcCCCCCHHHHHHHc-CCHHHHHHHHhCC-----CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence                  5788885 899999999985 7788999999742     46899999999999999999999999999999976


Q ss_pred             cc
Q 001315          999 DR 1000 (1102)
Q Consensus       999 ~~ 1000 (1102)
                      ..
T Consensus       157 ~~  158 (169)
T PHA02741        157 TS  158 (169)
T ss_pred             Hh
Confidence            65

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=5.3e-18  Score=174.15  Aligned_cols=126  Identities=21%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      ++|||+|+..|.-+||+.||+.   .+++++..      ..+|.|+||+|+-+|..+|+.+||++|+            .
T Consensus        73 WtPlhia~s~g~~evVk~Ll~r---~~advna~------tn~G~T~LHyAagK~r~eIaqlLle~ga------------~  131 (226)
T KOG4412|consen   73 WTPLHIAASNGNDEVVKELLNR---SGADVNAT------TNGGQTCLHYAAGKGRLEIAQLLLEKGA------------L  131 (226)
T ss_pred             CchhhhhhhcCcHHHHHHHhcC---CCCCccee------cCCCcceehhhhcCChhhHHHHHHhcCC------------C
Confidence            5899999999999999999995   13555533      3379999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |+.+|..|.||||-||.. |..+|+++|+..      +|-+|..|+.|+||||.|...||.++..+|+++.++.
T Consensus       132 i~~kD~~~qtplHRAAav-Gklkvie~Li~~------~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~  198 (226)
T KOG4412|consen  132 IRIKDKQGQTPLHRAAAV-GKLKVIEYLISQ------GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADT  198 (226)
T ss_pred             CcccccccCchhHHHHhc-cchhhHHHHHhc------CCCCCcccccCccHHHHHHhccCchHHHHHHHhccce
Confidence            899999999999999996 788899999987      4679999999999999998889999999999999886

>PHA02791 ankyrin-like protein; Provisional

Probab=99.73  E-value=1.6e-17  Score=182.30  Aligned_cols=140  Identities=14%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhchhhhcccccccccCCcchhhhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHH
Q 001315          814 EEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLL  893 (1102)
Q Consensus       814 e~al~FL~ElGWLlqrs~~~~~~~v~~Fqi~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlL  893 (1102)
                      .++..||.+.|--.+       +       .+-+++||+|+..|+.++++.|++.++    +++.        ..+.|||
T Consensus        12 ~~~~~~Lis~~a~~~-------D-------~~G~TpLh~Aa~~g~~eiv~~Ll~~ga----~~n~--------~d~~TpL   65 (284)
T PHA02791         12 KQLKSFLSSKDAFKA-------D-------VHGHSALYYAIADNNVRLVCTLLNAGA----LKNL--------LENEFPL   65 (284)
T ss_pred             HHHHHHHHhCCCCCC-------C-------CCCCcHHHHHHHcCCHHHHHHHHHCcC----CCcC--------CCCCCHH
Confidence            467778877662111       1       124589999999999999999998542    2221        1368999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCC
Q 001315          894 NRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDAS  973 (1102)
Q Consensus       894 H~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~  973 (1102)
                      |+|+..|+.++|++||++|+            ++|.+|..|+||||+|+.. ++.+++++|+++      +|++|.+|.+
T Consensus        66 h~Aa~~g~~eiV~lLL~~Ga------------dvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~------gadin~~~~~  126 (284)
T PHA02791         66 HQAATLEDTKIVKILLFSGM------------DDSQFDDKGNTALYYAVDS-GNMQTVKLFVKK------NWRLMFYGKT  126 (284)
T ss_pred             HHHHHCCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCcCccCCC
Confidence            99999999999999999998            4688888899999999884 778899999887      5678888888


Q ss_pred             CC-CHHHHHHHcCCHHHHHHHHHhhc
Q 001315          974 GH-SPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       974 G~-TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      |. ||||+|++.|+.+++++|+++..
T Consensus       127 g~~TpL~~Aa~~g~~eivk~LL~~~~  152 (284)
T PHA02791        127 GWKTSFYHAVMLNDVSIVSYFLSEIP  152 (284)
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHhcCC
Confidence            84 89999999999999988888753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.70  E-value=7.2e-17  Score=177.25  Aligned_cols=134  Identities=11%  Similarity=-0.008  Sum_probs=90.2

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||+|+..|+.+++++|++.+    .+++..     +..++.||||+||..|+.++|++||++++              
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~g----adin~~-----~~~g~~TpL~~Aa~~g~~eivk~LL~~~~--------------  152 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKN----WRLMFY-----GKTGWKTSFYHAVMLNDVSIVSYFLSEIP--------------  152 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCC----CCcCcc-----CCCCCcHHHHHHHHcCCHHHHHHHHhcCC--------------
Confidence            5566666666666666655532    222211     11112356666666666666666665543              


Q ss_pred             CCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCH-HHHHHHcCCHHHHHHHHHhhccc--c-C
Q 001315          928 NLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP-YSYALMKNNHAYNKLVARKLADR--R-N 1002 (1102)
Q Consensus       928 nakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TP-LHyAa~~G~~eiVeLLl~Kia~~--~-~ 1002 (1102)
                      +..| ..|.||||+||.. |+.++|++|+++      +|++|.+|..|.|| ||+|+..|+.++|++|++++++.  + .
T Consensus       153 ~~~d~~~g~TpLh~Aa~~-g~~eiv~lLL~~------gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        153 STFDLAILLSCIHITIKN-GHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             cccccccCccHHHHHHHc-CCHHHHHHHHHC------CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            2223 2589999999985 788999999998      57899999999987 99999999999999999997776  2 3


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      +.+.+++..
T Consensus       226 ~~~~l~~~e  234 (284)
T PHA02791        226 ENVLLDDAE  234 (284)
T ss_pred             cCccCCCHH
Confidence            445565443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.70  E-value=1e-16  Score=161.83  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=104.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHH---HHHHHHHcCCCCCCCCCCCc
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRR---MVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~---IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      ++.||.|+..|..+.++.++..+.+.+..++..     +. .|+||||+|+..|+.+   +|++|+++|+          
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~-----d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga----------   84 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRY-----DH-HGRQCTHMVAWYDRANAVMKIELLVNMGA----------   84 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhcc-----CC-CCCcHHHHHHHhCccCHHHHHHHHHHcCC----------
Confidence            378899999998866666555544333332322     22 5999999999998865   4899999998          


Q ss_pred             CCCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhC-CCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          924 IFPPNLAG-PGGITPLHLAACTSDSDDIIDALTN-DPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       924 lfdpnakd-~~G~TPLHiAA~~~g~eeVVeLLL~-~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                        ++|.++ ..|.||||+|+.. +..+++++|+. .      +++++++|..|.||||+|+.+|+.+++++|+++.++.
T Consensus        85 --din~~d~~~g~TpLh~A~~~-g~~~iv~~Ll~~~------gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         85 --DINARELGTGNTLLHIAAST-KNYELAEWLCRQL------GVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             --CCCCCCCCCCCcHHHHHHHh-CCHHHHHHHHhcc------CCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              578888 5899999999985 77889999995 4      5689999999999999999999999999999998776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.70  E-value=9.3e-17  Score=167.82  Aligned_cols=138  Identities=10%  Similarity=0.092  Sum_probs=105.7

Q ss_pred             hhhHHHHHHhcC--cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC
Q 001315          846 FKFLLVFSVDRG--CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTP  920 (1102)
Q Consensus       846 fktLL~FAadrG--wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~---gs~~IVeLLL~~GAd~~~gsa  920 (1102)
                      ..+|||+|+.++  +.+++++||+.+    .+++..     +...|+||||+|+..   ++.+||++||++|+       
T Consensus        51 g~TpLh~a~~~~~~~~eiv~~Ll~~g----advn~~-----~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga-------  114 (209)
T PHA02859         51 YETPIFSCLEKDKVNVEILKFLIENG----ADVNFK-----TRDNNLSALHHYLSFNKNVEPEILKILIDSGS-------  114 (209)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHCC----CCCCcc-----CCCCCCCHHHHHHHhCccccHHHHHHHHHCCC-------
Confidence            348999998755  778999999854    333322     222588999998764   47899999999998       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhc-CCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH-HHHcCCHHHHHHHHHhhc
Q 001315          921 QKYIFPPNLAGPGGITPLHLAACT-SDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY-ALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       921 ~~ylfdpnakd~~G~TPLHiAA~~-~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy-Aa~~G~~eiVeLLl~Kia  998 (1102)
                           ++|.+|..|.||||+|+.. .+..+++++|++.      ++++|++|.+|.||||. |+..|+.+++++|+++++
T Consensus       115 -----din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~------gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga  183 (209)
T PHA02859        115 -----SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS------GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI  183 (209)
T ss_pred             -----CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc------CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC
Confidence                 5788999999999998753 3567899999987      57889999999999995 567889999999998866


Q ss_pred             cc----cCCceeeeeC
Q 001315          999 DR----RNGQVTIPVG 1010 (1102)
Q Consensus       999 ~~----~~~~v~l~i~ 1010 (1102)
                      +-    ..|..+|++.
T Consensus       184 di~~~d~~g~tpl~la  199 (209)
T PHA02859        184 DINETNKSGYNCYDLI  199 (209)
T ss_pred             CCCCCCCCCCCHHHHH
Confidence            44    2466665553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1.1e-16  Score=180.29  Aligned_cols=125  Identities=24%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||.|+.+|..++++.|++.+..    ....     ....|.||||+|+..|+.++|++||++|++            
T Consensus        69 ~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~-----~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad------------  127 (413)
T PHA02875         69 ESELHDAVEEGDVKAVEELLDLGKF----ADDV-----FYKDGMTPLHLATILKKLDIMKLLIARGAD------------  127 (413)
T ss_pred             ccHHHHHHHCCCHHHHHHHHHcCCc----cccc-----ccCCCCCHHHHHHHhCCHHHHHHHHhCCCC------------
Confidence            4788888888888888888885321    1111     112478888888888888888888888873            


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.++..|.||||+|+.. +..+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|++++++
T Consensus       128 ~~~~~~~g~tpLh~A~~~-~~~~~v~~Ll~~------g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~  193 (413)
T PHA02875        128 PDIPNTDKFSPLHLAVMM-GDIKGIELLIDH------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN  193 (413)
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            455555566666666553 445556666555      344555666666666666666666666666555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.69  E-value=7.8e-17  Score=158.96  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=99.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCCc
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCR---RMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~---~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      .+|||+|+.+|.  ++.+|+.....  .+.+....... ...|.||||+||..|+.   ++|++|+++|+          
T Consensus        18 ~tpLh~A~~~g~--~~~l~~~~~~~--~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga----------   82 (154)
T PHA02736         18 ENILHYLCRNGG--VTDLLAFKNAI--SDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGA----------   82 (154)
T ss_pred             CCHHHHHHHhCC--HHHHHHHHHHh--cchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCC----------
Confidence            389999999997  33443322111  01000000011 22589999999999987   46899999998          


Q ss_pred             CCCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          924 IFPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       924 lfdpnakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                        ++|.++ ..|.||||+|+.. ++.+++++|+.++     ++++|.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus        83 --din~~~~~~g~T~Lh~A~~~-~~~~i~~~Ll~~~-----g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         83 --DINGKERVFGNTPLHIAVYT-QNYELATWLCNQP-----GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             --CccccCCCCCCcHHHHHHHh-CCHHHHHHHHhCC-----CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              578888 5899999999985 7788999999742     5689999999999999999999999999999987653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.3e-16  Score=164.85  Aligned_cols=133  Identities=13%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK--CRRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g--s~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      +..+||+.|+..|..++|+.|+...       +..     +. .|.||||+|+.++  +.++|++||++|+         
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~-------n~~-----~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~ga---------   77 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFV-------NDC-----ND-LYETPIFSCLEKDKVNVEILKFLIENGA---------   77 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhh-------hcc-----Cc-cCCCHHHHHHHcCCCCHHHHHHHHHCCC---------
Confidence            4569999999999999999998742       111     22 5899999999854  8999999999998         


Q ss_pred             cCCCCCCCC-CCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHH--cCCHHHHHHHHHhh
Q 001315          923 YIFPPNLAG-PGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM--KNNHAYNKLVARKL  997 (1102)
Q Consensus       923 ylfdpnakd-~~G~TPLHiAA~~~--g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~--~G~~eiVeLLl~Ki  997 (1102)
                         ++|.++ ..|+||||+|+...  +..+|+++|+++      +|++|.+|.+|.||||+|+.  .++.+++++|+++.
T Consensus        78 ---dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~------gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g  148 (209)
T PHA02859         78 ---DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS------GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG  148 (209)
T ss_pred             ---CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence               578886 58999999998743  468899999998      57899999999999999976  57899999999997


Q ss_pred             ccc----cCCceeee
Q 001315          998 ADR----RNGQVTIP 1008 (1102)
Q Consensus       998 a~~----~~~~v~l~ 1008 (1102)
                      ++-    .+|..+|.
T Consensus       149 adin~~d~~g~t~Lh  163 (209)
T PHA02859        149 VSFLNKDFDNNNILY  163 (209)
T ss_pred             CCcccccCCCCcHHH
Confidence            664    24555554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.67  E-value=3.1e-16  Score=180.92  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=113.1

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.+|||+|+.+|+.++++.||+.+    ++++..     +. .|.||||+|++.|+.++|++||++|+            
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~g----ad~n~~-----d~-~g~tpLh~A~~~~~~~iv~~Ll~~ga------------  225 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYG----ANVNIP-----DK-TNNSPLHHAVKHYNKPIVHILLENGA------------  225 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHhCCHHHHHHHHHcCC------------
Confidence            458999999999999999999964    333322     22 59999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHhhccc----
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLADR---- 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~-~G~TPLHyAa~~G~~eiVeLLl~Kia~~---- 1000 (1102)
                      ++|.+|..|.||||+|+...+..+++++|+++      ||++|++|. .|.||||+|  .++.+++++|++++++-    
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~------gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEH------GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc------CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            57889999999999999755677899999987      568899886 799999999  57889999999997765    


Q ss_pred             cCCceeeeeC
Q 001315         1001 RNGQVTIPVG 1010 (1102)
Q Consensus      1001 ~~~~v~l~i~ 1010 (1102)
                      ..|..+|.+.
T Consensus       298 ~~g~TpL~~A  307 (477)
T PHA02878        298 SYKLTPLSSA  307 (477)
T ss_pred             CCCCCHHHHH
Confidence            3677777665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.67  E-value=1.5e-16  Score=185.93  Aligned_cols=150  Identities=19%  Similarity=0.193  Sum_probs=104.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC----CCCC---
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS----NDTP---  920 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~----~gsa---  920 (1102)
                      ++||||+-++..+|+|+|+..++    ++|..     .-.-+-||||+|+++|+..||++||++|||..    .|-.   
T Consensus        80 tlLHWAAiNNrl~v~r~li~~ga----dvn~~-----gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lH  150 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGA----DVNAI-----GGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLH  150 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCC----Ccccc-----CCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHH
Confidence            89999999999999999999653    33422     11136799999999999999999999999631    1100   


Q ss_pred             ----------CCc----CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCC-CCCCCHHHHHHHcC
Q 001315          921 ----------QKY----IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYALMKN  985 (1102)
Q Consensus       921 ----------~~y----lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD-~~G~TPLHyAa~~G  985 (1102)
                                .-|    ..++|.+|.+|+||||+||.+ +....+.+|+.-      ++.++.+| ..|.||||+|+.+|
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk-g~~~~v~~LL~f------~a~~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK-GFALFVRRLLKF------GASLLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh-cccHHHHHHHHh------cccccccccccCCchHHHHHhcC
Confidence                      001    136788888888888888875 443336666665      44567776 66888888888888


Q ss_pred             CHHHHHHHHHhhccc----cCCceeeeeCccc
Q 001315          986 NHAYNKLVARKLADR----RNGQVTIPVGVEI 1013 (1102)
Q Consensus       986 ~~eiVeLLl~Kia~~----~~~~v~l~i~~~~ 1013 (1102)
                      |...+.||++-.++-    .||..++++..+.
T Consensus       224 N~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  224 NLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            888887444332222    2567777776554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.66  E-value=5e-16  Score=174.99  Aligned_cols=125  Identities=19%  Similarity=0.128  Sum_probs=110.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .+|||+|+..|+.++++.|++.++    +.+..      ...|.||||+|+..|+.++|++|+++|+            +
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~ga----d~~~~------~~~g~tpLh~A~~~~~~~~v~~Ll~~g~------------~  160 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGA----DPDIP------NTDKFSPLHLAVMMGDIKGIELLIDHKA------------C  160 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCC----CCCCC------CCCCCCHHHHHHHcCCHHHHHHHHhcCC------------C
Confidence            589999999999999999999643    33322      2258999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCC-CCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG-HSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G-~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. |..+++++|++.      ||++|..|.+| .||+|+|+..|+.+++++|++++++-
T Consensus       161 ~~~~d~~g~TpL~~A~~~-g~~eiv~~Ll~~------ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAK-GDIAICKMLLDS------GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHhC------CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            789999999999999985 778899999998      57899999987 58999999999999999999998774

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.66  E-value=4.8e-16  Score=179.36  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=114.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC-----------
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS-----------  916 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~-----------  916 (1102)
                      +|||+|+..|+.++|+.||+.+    ++++..     +. .|+||||+||..|+.++|+.||+.+++..           
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~g----advn~~-----d~-~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a  108 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRG----HNVNQP-----DH-RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDA  108 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHH
Confidence            7999999999999999999964    344433     22 68999999999988888888877643210           


Q ss_pred             -----------------CCC--------------------C----CCcCCCCCCCCCC-CChHHHHHHhcCCcHHHHHHH
Q 001315          917 -----------------NDT--------------------P----QKYIFPPNLAGPG-GITPLHLAACTSDSDDIIDAL  954 (1102)
Q Consensus       917 -----------------~gs--------------------a----~~ylfdpnakd~~-G~TPLHiAA~~~g~eeVVeLL  954 (1102)
                                       ++.                    .    ..+..++|.++.. |.||||+||.. +..+++++|
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~L  187 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELL  187 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHH
Confidence                             000                    0    0012367888888 99999999985 778899999


Q ss_pred             hCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          955 TNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       955 L~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      ++.      ||++|.+|..|.||||+|+..|+.+++++|+++.++.    ..|+.+|.+..
T Consensus       188 l~~------gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~  242 (477)
T PHA02878        188 LSY------GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV  242 (477)
T ss_pred             HHC------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            987      5689999999999999999999999999999987665    35777776643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=174.36  Aligned_cols=140  Identities=21%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHh-------------------ccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHH
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVE-------------------GNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVD  906 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~-------------------g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVe  906 (1102)
                      ..++|+.|+..|+.+++++|++.+++                   .+++++..      ...|.||||+|+..|+.++|+
T Consensus        68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~------~~~g~T~Lh~A~~~~~~~~v~  141 (434)
T PHA02874         68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK------DAELKTFLHYAIKKGDLESIK  141 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC------CCCCccHHHHHHHCCCHHHHH
Confidence            35899999999999999999985432                   11222211      225889999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCC
Q 001315          907 LLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN  986 (1102)
Q Consensus       907 LLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~  986 (1102)
                      +|+++|+            ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+
T Consensus       142 ~Ll~~ga------------d~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~------g~~~n~~~~~g~tpL~~A~~~g~  202 (434)
T PHA02874        142 MLFEYGA------------DVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEK------GAYANVKDNNGESPLHNAAEYGD  202 (434)
T ss_pred             HHHhCCC------------CCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCC
Confidence            9999998            5788999999999999985 788999999998      56789999999999999999999


Q ss_pred             HHHHHHHHHhhccc----cCCceeeeeC
Q 001315          987 HAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       987 ~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      .+++++|+++.++-    ..|..+|.+.
T Consensus       203 ~~iv~~Ll~~g~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        203 YACIKLLIDHGNHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             HHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            99999999997654    2466555543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.65  E-value=8e-16  Score=175.32  Aligned_cols=145  Identities=18%  Similarity=0.172  Sum_probs=92.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC----CCCC--
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS----NDTP--  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~----~gsa--  920 (1102)
                      .++||+|+.+|..++++.|++.+    ++++..     + ..|.||||+|+..|+.++|++|+++|++..    .|.+  
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~g----ad~n~~-----d-~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL  194 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYG----ADVNIE-----D-DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL  194 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCC----CCCCCc-----C-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            47888888888888888887753    233322     1 247778888888888888888887776310    0000  


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC
Q 001315          921 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  985 (1102)
Q Consensus       921 ---------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G  985 (1102)
                                     ..+..+++.++..|.||||+|+.. +. +++++|+.       ++++|.+|.+|.||||||+..+
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~-~~-~~i~~Ll~-------~~~in~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH-NR-SAIELLIN-------NASINDQDIDGSTPLHHAINPP  265 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC-Ch-HHHHHHHc-------CCCCCCcCCCCCCHHHHHHhcC
Confidence                           000113344445555555555542 22 24444442       3578999999999999999876


Q ss_pred             -CHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          986 -NHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       986 -~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                       +.+++++|+++.++-    .+|..+|++.
T Consensus       266 ~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        266 CDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             CcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence             789999999987665    3687777765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=175.61  Aligned_cols=93  Identities=15%  Similarity=0.057  Sum_probs=75.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      +.|++|.|+..++.++|++||++||            ++|.+|..|.||||+||.. |+.+++++|+++      ||++|
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GA------------DIN~kD~~G~TpLh~Aa~~-g~~eiVelLL~~------GAdIN  248 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIE------------DINQLDAGGRTLLYRAIYA-GYIDLVSWLLEN------GANVN  248 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcC------------CcCcCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCC
Confidence            4455555555555555555555555            6899999999999999984 888999999998      67899


Q ss_pred             CCCCCCCCHHHHHHHcC--------CHHHHHHHHHhhccc
Q 001315          969 ILDASGHSPYSYALMKN--------NHAYNKLVARKLADR 1000 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G--------~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|..|.||||+|+.+|        |.+++++|+++.++-
T Consensus       249 ~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        249 AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            99999999999999998        469999999987654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.62  E-value=2e-15  Score=172.61  Aligned_cols=126  Identities=21%  Similarity=0.303  Sum_probs=110.0

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcC------chHHHHHHHcCC--HHHHHHHHHcCCCCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE------IQLLNRAVKMKC--RRMVDLLIHYSLTSSN  917 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g------~TlLH~AV~~gs--~~IVeLLL~~GAd~~~  917 (1102)
                      -.+|||+|+..|..+++++|++.+++    .+..     +. .+      .|+||+|+..|+  .++|++||++|+    
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~-----~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~----  241 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGAD----INAG-----DI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV----  241 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC----ccCC-----CC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC----
Confidence            34899999999999999999997543    2211     11 24      799999999999  999999999998    


Q ss_pred             CCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          918 DTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       918 gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                              ++|.+|..|.||||+|+.. ++.+++++|++.      ||++|.+|.+|.||||+|+..|+.+++++|++++
T Consensus       242 --------din~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~------gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        242 --------PINIKDVYGFTPLHYAVYN-NNPEFVKYLLDL------GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             --------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence                    5789999999999999985 778999999997      5689999999999999999999999999999987


Q ss_pred             ccc
Q 001315          998 ADR 1000 (1102)
Q Consensus       998 a~~ 1000 (1102)
                      ++.
T Consensus       307 ~~i  309 (480)
T PHA03100        307 PSI  309 (480)
T ss_pred             CCH
Confidence            754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.61  E-value=3.4e-15  Score=184.01  Aligned_cols=132  Identities=17%  Similarity=0.103  Sum_probs=103.1

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ...+|+.|+..|+.++++.||+.+    ++.+..     +. .|.||||+|+.+|+.++|++||++|+            
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G----~d~n~~-----d~-~G~TpLh~Aa~~g~~~~v~~Ll~~ga------------  582 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAK----LDPDIG-----DS-KGRTPLHIAASKGYEDCVLVLLKHAC------------  582 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcChHHHHHHHHhcCC------------
Confidence            346788899999999999999854    333422     23 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC-------------------------CCCCCCCCcCCCCCCCCHHHH
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ-------------------------EIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~-------------------------~iGagA~vNarD~~G~TPLHy  980 (1102)
                      ++|.+|.+|.||||+|+.. |+.+++++|++...                         .+..||++|++|.+|.||||+
T Consensus       583 din~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~  661 (823)
T PLN03192        583 NVHIRDANGNTALWNAISA-KHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV  661 (823)
T ss_pred             CCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            4788888888888877663 45555555543211                         011267899999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhccc
Q 001315          981 ALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |+..|+.+++++|++++++.
T Consensus       662 A~~~g~~~iv~~Ll~~GAdv  681 (823)
T PLN03192        662 AMAEDHVDMVRLLIMNGADV  681 (823)
T ss_pred             HHHCCcHHHHHHHHHcCCCC
Confidence            99999999999999997765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.60  E-value=1.7e-15  Score=177.20  Aligned_cols=136  Identities=23%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +-.+-|++.|..+.||.|++.-   +.+++..     +. .|.|+||+|+.+|+.+++++||++||            +|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~---g~~v~~~-----D~-~g~tlLHWAAiNNrl~v~r~li~~ga------------dv  104 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESE---GESVNNP-----DR-EGVTLLHWAAINNRLDVARYLISHGA------------DV  104 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhc---CcCCCCC-----Cc-CCccceeHHHHcCcHHHHHHHHHcCC------------Cc
Confidence            4567799999999999999961   2333433     33 69999999999999999999999999            46


Q ss_pred             CCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          928 NLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       928 nakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      |+.| .-|.|||||||.+ |+..||++|+++      |||++++|.+|.||||.|++.||.-+|-+|+.|.++.    .+
T Consensus       105 n~~gG~l~stPLHWAar~-G~~~vv~lLlqh------GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~  177 (600)
T KOG0509|consen  105 NAIGGVLGSTPLHWAARN-GHISVVDLLLQH------GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNN  177 (600)
T ss_pred             cccCCCCCCCcchHHHHc-CcHHHHHHHHHc------CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCC
Confidence            7766 7788888888884 778888888887      6778888888888888888888888888888887666    26


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      |+.+|....
T Consensus       178 grTpLmwAa  186 (600)
T KOG0509|consen  178 GRTPLMWAA  186 (600)
T ss_pred             CCCHHHHHH
Confidence            777765543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.60  E-value=4.7e-15  Score=169.53  Aligned_cols=126  Identities=20%  Similarity=0.159  Sum_probs=110.4

Q ss_pred             hhhHHHH-----HHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHH--HcCCHHHHHHHHHcCCCCCCC
Q 001315          846 FKFLLVF-----SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAV--KMKCRRMVDLLIHYSLTSSND  918 (1102)
Q Consensus       846 fktLL~F-----AadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV--~~gs~~IVeLLL~~GAd~~~g  918 (1102)
                      ..++||+     |+..+..++++.|++.++    +++..     +. .|.||||+|+  ..|+.++|++|+++|+     
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga----~i~~~-----d~-~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-----  132 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGA----NVNAP-----DN-NGITPLLYAISKKSNSYSIVEYLLDNGA-----  132 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHHHCCC----CCCCC-----CC-CCCchhhHHHhcccChHHHHHHHHHcCC-----
Confidence            3489999     999999999999999643    33322     22 5899999999  9999999999999998     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCC--cHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          919 TPQKYIFPPNLAGPGGITPLHLAACTSD--SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       919 sa~~ylfdpnakd~~G~TPLHiAA~~~g--~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                             +++.++..|.||||+|+.. +  ..+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++
T Consensus       133 -------~~~~~~~~g~t~L~~A~~~-~~~~~~iv~~Ll~~------g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~  198 (480)
T PHA03100        133 -------NVNIKNSDGENLLHLYLES-NKIDLKILKLLIDK------GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN  198 (480)
T ss_pred             -------CCCccCCCCCcHHHHHHHc-CCChHHHHHHHHHC------CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence                   5788999999999999985 6  78899999998      568999999999999999999999999999999


Q ss_pred             hccc
Q 001315          997 LADR 1000 (1102)
Q Consensus       997 ia~~ 1000 (1102)
                      +++.
T Consensus       199 ga~~  202 (480)
T PHA03100        199 GADI  202 (480)
T ss_pred             CCCc
Confidence            7765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.6e-15  Score=171.64  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=107.7

Q ss_pred             hhHHHHHHhc--CcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC----CHHHHHHHHHcCCCCCCCCC
Q 001315          847 KFLLVFSVDR--GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK----CRRMVDLLIHYSLTSSNDTP  920 (1102)
Q Consensus       847 ktLL~FAadr--GwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g----s~~IVeLLL~~GAd~~~gsa  920 (1102)
                      ++|||+|+..  ++.+++++||+.++    +++..     ....|.||||.|++.+    +.++|++||++|++......
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Ga----di~~~-----~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGV----NLFEK-----TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCC----Ccccc-----ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            4899998865  57899999999653    33321     1235899999998764    99999999999996432110


Q ss_pred             ------------CC--------------cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCC
Q 001315          921 ------------QK--------------YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG  974 (1102)
Q Consensus       921 ------------~~--------------ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G  974 (1102)
                                  ..              ...++|.+|..|+||||+||.. ++.+++++|++.      |||+|++|..|
T Consensus       217 ~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~-~~~~~v~~LL~~------Gadin~~d~~G  289 (494)
T PHA02989        217 GSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV-DNYEAFNYLLKL------GDDIYNVSKDG  289 (494)
T ss_pred             ccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh-cCHHHHHHHHHc------CCCccccCCCC
Confidence                        00              0137899999999999999985 778899999997      67899999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHh
Q 001315          975 HSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       975 ~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      .||||+|+.+|+.+++++|+++
T Consensus       290 ~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        290 DTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999988875

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.8e-15  Score=163.65  Aligned_cols=124  Identities=19%  Similarity=0.156  Sum_probs=101.8

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ...+|+.|+..|..++++.||+.+++    ++...+  .....|.||||+|++.++.+++++|+++||            
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAd----iN~~~~--~sd~~g~TpLh~Aa~~~~~eivklLL~~GA------------   94 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGAD----PEAPFP--LSENSKTNPLIYAIDCDNDDAAKLLIRYGA------------   94 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCC----ccccCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            45788889999999999999996543    332210  011258999999999999999999999999            


Q ss_pred             CCCCC-CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001315          926 PPNLA-GPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  994 (1102)
Q Consensus       926 dpnak-d~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl  994 (1102)
                      ++|++ +..|.||||+|+.. +..+++++|+++      ||++|++|.+|.||||+|++.++..++.++.
T Consensus        95 DVN~~~~~~g~TpLh~Aa~~-~~~eivklLL~~------GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         95 DVNRYAEEAKITPLYISVLH-GCLKCLEILLSY------GADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CcCcccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            57886 46799999999985 788999999998      6789999999999999999988777665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.58  E-value=6e-15  Score=177.47  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=102.2

Q ss_pred             hhhHHHHHHhcC-cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          846 FKFLLVFSVDRG-CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       846 fktLL~FAadrG-wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      ..++||+|+..+ ...+++.|++.+    .+++..     +. .|.||||+|+..|+.++|++||++|+           
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~g----adin~~-----d~-~G~TpLh~Aa~~~~~~iv~~Ll~~ga-----------  399 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELG----ANVNAR-----DY-CDKTPIHYAAVRNNVVIINTLLDYGA-----------  399 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcC----CCCccC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC-----------
Confidence            358999999865 778888888754    334422     22 59999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC-CHHHHHHHHHhhccc---
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN-NHAYNKLVARKLADR--- 1000 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G-~~eiVeLLl~Kia~~--- 1000 (1102)
                       +++..+..|.||||+|+...+...++++|++.      ++++|.+|.+|.||||+|+..| +.+++++|++++++.   
T Consensus       400 -d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~------gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        400 -DIEALSQKIGTALHFALCGTNPYMSVKTLIDR------GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             -CccccCCCCCchHHHHHHcCCHHHHHHHHHhC------CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence             46777777888888887755555677777776      4667888888888888888766 567888888776654   


Q ss_pred             -cCCceeeee
Q 001315         1001 -RNGQVTIPV 1009 (1102)
Q Consensus      1001 -~~~~v~l~i 1009 (1102)
                       ..|+.++.+
T Consensus       473 d~~g~tpl~~  482 (682)
T PHA02876        473 NIQNQYPLLI  482 (682)
T ss_pred             CCCCCCHHHH
Confidence             245555554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=4.1e-15  Score=176.88  Aligned_cols=135  Identities=22%  Similarity=0.185  Sum_probs=115.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH-YSLTSSNDTPQKYIF  925 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~-~GAd~~~gsa~~ylf  925 (1102)
                      .+|||+|+++|+.+.+..||..+    ++++..+      .++.||||+||.+|+.+.|+-||+ +|.           +
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~G----a~I~~kn------~d~~spLH~AA~yg~~ntv~rLL~~~~~-----------r  332 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFG----ASINSKN------KDEESPLHFAAIYGRINTVERLLQESDT-----------R  332 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcC----CcccccC------CCCCCchHHHHHcccHHHHHHHHhCcCc-----------c
Confidence            38999999999999999999964    5556443      268899999999999999999999 553           2


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc---CCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc--
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS---ILDASGHSPYSYALMKNNHAYNKLVARKLADR-- 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN---arD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~-- 1000 (1102)
                      ..|..|..|.||||+||. +|+..|+++|++.      ||..+   .+|++|.||||+|++.||..+|++|+..+++.  
T Consensus       333 llne~D~~g~tpLHlaa~-~gH~~v~qlLl~~------GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  333 LLNESDLHGMTPLHLAAK-SGHDRVVQLLLNK------GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             ccccccccCCCchhhhhh-cCHHHHHHHHHhc------ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            468899999999999996 6999999999998      34444   45999999999999999999999999998877  


Q ss_pred             --cCCceeeee
Q 001315         1001 --RNGQVTIPV 1009 (1102)
Q Consensus      1001 --~~~~v~l~i 1009 (1102)
                        ++|-..+++
T Consensus       406 ~n~~g~SA~~~  416 (929)
T KOG0510|consen  406 KNKKGKSAFDT  416 (929)
T ss_pred             ccccccccccc
Confidence              367788883

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.58  E-value=3.1e-15  Score=165.97  Aligned_cols=160  Identities=22%  Similarity=0.171  Sum_probs=119.2

Q ss_pred             CcH-HHHHHHHHHhc----hhhhcccccccccCCcchhhhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCC-----
Q 001315          811 RSR-EEVLHFLNELG----WLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLS-----  880 (1102)
Q Consensus       811 ~SR-e~al~FL~ElG----WLlqrs~~~~~~~v~~Fqi~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s-----  880 (1102)
                      .++ +++.+||...+    -||++        +..|--.+=.+.||||+.+.+++||+.|||.+.-   +++..+     
T Consensus       236 ~a~pe~V~~~l~~f~als~~lL~y--------vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC---~VD~qNrAGYt  304 (452)
T KOG0514|consen  236 SSDPEQVEDYLAYFEALSPPLLEY--------VVNLADSNGNTALHYAVSHANFDVVSILLDSGVC---DVDQQNRAGYT  304 (452)
T ss_pred             CCCHHHHHHHHHHHHhcChHHHHH--------HhhhhcCCCCeeeeeeecccchHHHHHHhccCcc---ccccccccccc
Confidence            344 78888888776    23333        1212223445899999999999999999996421   111110     


Q ss_pred             h---------------------------HHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCC
Q 001315          881 R---------------------------ESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPG  933 (1102)
Q Consensus       881 ~---------------------------e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~  933 (1102)
                      +                           .+.....|.|+|++||..|.++||+.||..||            |+|.+|.+
T Consensus       305 piMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgA------------dVNiQDdD  372 (452)
T KOG0514|consen  305 PVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGA------------DVNIQDDD  372 (452)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccC------------CCccccCC
Confidence            0                           01122247799999999999999999999998            57899999


Q ss_pred             CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          934 GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       934 G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      |-|+|+.||. +|+.+||++|+..|     ++|+.++|.+|.|+|.+|-..||.+|.-+|-.+.+=
T Consensus       373 GSTALMCA~E-HGhkEivklLLA~p-----~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~  432 (452)
T KOG0514|consen  373 GSTALMCAAE-HGHKEIVKLLLAVP-----SCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNI  432 (452)
T ss_pred             ccHHHhhhhh-hChHHHHHHHhccC-----cccceeecCCCchhhhhHHhcCchHHHHHHHHHHHh
Confidence            9999999988 58889999999886     578889999999999999999999998888776554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=165.25  Aligned_cols=135  Identities=19%  Similarity=0.150  Sum_probs=110.3

Q ss_pred             hhHHHHHHhcC---cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK-CRRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadrG---wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g-s~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      .++||+|+..+   ..++++.|++.+    ++++..     +. .|.||||+|+..| +.+++++|+++|+         
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~G----adin~~-----~~-~g~TpLh~A~~~~~~~~iv~lLl~~ga---------  108 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAG----ADVNAP-----ER-CGFTPLHLYLYNATTLDVIKLLIKAGA---------  108 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCcHHHHHHHHHcCC---------
Confidence            58999999988   999999999964    444433     22 6999999999999 5999999999998         


Q ss_pred             cCCCCCCCCCCCChHHHHHHh-cCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC--CHHHHHHHHHhhcc
Q 001315          923 YIFPPNLAGPGGITPLHLAAC-TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN--NHAYNKLVARKLAD  999 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~-~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G--~~eiVeLLl~Kia~  999 (1102)
                         ++|.+|..|.||||+|+. ..++.+++++|++.      |++++.+|..|.||||+|+..+  +.+++++|+++.++
T Consensus       109 ---~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~------gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        109 ---DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK------GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD  179 (471)
T ss_pred             ---CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence               578899999999999994 23567899999987      5679999999999999998865  67899999988665


Q ss_pred             c----cCCceeeee
Q 001315         1000 R----RNGQVTIPV 1009 (1102)
Q Consensus      1000 ~----~~~~v~l~i 1009 (1102)
                      -    .+|..+|.+
T Consensus       180 ~~~~d~~g~t~Lh~  193 (471)
T PHA03095        180 VYAVDDRFRSLLHH  193 (471)
T ss_pred             CcccCCCCCCHHHH
Confidence            4    245555543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.57  E-value=3.1e-15  Score=185.92  Aligned_cols=138  Identities=24%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||.|.+.+...+++.|++.++    .++..      ...+.||||.||.+|+..+|++||++||            ++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga----~v~~~------~~r~~TpLh~A~~~g~v~~VkfLLe~gA------------dv  566 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGA----NVDLR------TGRGYTPLHVAVHYGNVDLVKFLLEHGA------------DV  566 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCC----ceehh------cccccchHHHHHhcCCchHHHHhhhCCc------------cc
Confidence            77888888888888888888543    33322      2257899999999999999999999999            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc-----c--
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD-----R-- 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~-----~-- 1000 (1102)
                      +++++.|+||||.||.. |+.+|+++|+++      ||++|+.|.+|.||||+|+..|+.+++++|..-.++     .  
T Consensus       567 ~ak~~~G~TPLH~Aa~~-G~~~i~~LLlk~------GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~  639 (1143)
T KOG4177|consen  567 NAKDKLGYTPLHQAAQQ-GHNDIAELLLKH------GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVK  639 (1143)
T ss_pred             cccCCCCCChhhHHHHc-ChHHHHHHHHHc------CCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchh
Confidence            99999999999999996 688999999999      578999999999999999999999999999887666     2  


Q ss_pred             --cCCceeeeeCcccc
Q 001315         1001 --RNGQVTIPVGVEIE 1014 (1102)
Q Consensus      1001 --~~~~v~l~i~~~~~ 1014 (1102)
                        .+|+++.+++.+.+
T Consensus       640 e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  640 ENRKGAVPEDVAEELD  655 (1143)
T ss_pred             hhhcccChhhHHHHhh
Confidence              47999999888744

>PHA02798 ankyrin-like protein; Provisional

Probab=99.56  E-value=2e-14  Score=166.85  Aligned_cols=138  Identities=12%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             hhHHHHHHhcCc---chhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc----CCHHHHHHHHHcCCCCCCC-
Q 001315          847 KFLLVFSVDRGC---CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM----KCRRMVDLLIHYSLTSSND-  918 (1102)
Q Consensus       847 ktLL~FAadrGw---caVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~----gs~~IVeLLL~~GAd~~~g-  918 (1102)
                      .+|||+|+..+.   .+++++||+.+    ++++..     +...|.||||.|+..    ++.++|++|+++|++.... 
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~g----adin~~-----~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEKG----VDINTH-----NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHhC----CCcccc-----cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            489999999887   89999999864    333322     223588999998765    4899999999999864211 


Q ss_pred             ----CC------------CC-------c---CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC
Q 001315          919 ----TP------------QK-------Y---IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  972 (1102)
Q Consensus       919 ----sa------------~~-------y---lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~  972 (1102)
                          +.            ..       +   ..++|.+|..|+||||+||.. +..+++++|++.      |||+|++|.
T Consensus       217 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~-~~~~~v~~LL~~------GAdin~~d~  289 (489)
T PHA02798        217 KSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH-NNRKIFEYLLQL------GGDINIITE  289 (489)
T ss_pred             ccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc-CcHHHHHHHHHc------CCcccccCC
Confidence                00            00       0   137899999999999999985 678899999998      678999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          973 SGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       973 ~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      .|.||||+|+.+|+.+++++|+++..+.
T Consensus       290 ~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        290 LGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            9999999999999999999998875443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=168.81  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=105.9

Q ss_pred             hhHHHHHHhc---CcchhHHHHHHHHHhccccC-CCCChHHHhhhcCchHHHHHHHc--CCHHHHHHHHHcCCCCCCCCC
Q 001315          847 KFLLVFSVDR---GCCALVKAILDILVEGNLSM-DGLSRESLEMLWEIQLLNRAVKM--KCRRMVDLLIHYSLTSSNDTP  920 (1102)
Q Consensus       847 ktLL~FAadr---GwcaVVK~LLd~L~~g~v~i-~~~s~e~~~~~~g~TlLH~AV~~--gs~~IVeLLL~~GAd~~~gsa  920 (1102)
                      .+||+.|+..   +..+++++||+.+    +++ +..      ...|+||||+|+..  ++.++|++||++|++      
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~G----adin~~~------d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad------  172 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKG----INVNDVK------NSRGYNLLHMYLESFSVKKDVIKILLSFGVN------  172 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCC----CCccccc------CCCCCCHHHHHHHhccCCHHHHHHHHHcCCC------
Confidence            4899887765   6789999999964    333 211      23599999999864  689999999999994      


Q ss_pred             CCcCCCCCC-CCCCCChHHHHHHhcC---CcHHHHHHHhCCCCCCC--------------------------------CC
Q 001315          921 QKYIFPPNL-AGPGGITPLHLAACTS---DSDDIIDALTNDPQEIG--------------------------------PS  964 (1102)
Q Consensus       921 ~~ylfdpna-kd~~G~TPLHiAA~~~---g~eeVVeLLL~~p~~iG--------------------------------ag  964 (1102)
                            ++. .+..|.||||+|+...   ++.+++++|++.+..+-                                .+
T Consensus       173 ------i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~  246 (494)
T PHA02989        173 ------LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY  246 (494)
T ss_pred             ------ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhC
Confidence                  455 4566777777776531   35567777776533211                                13


Q ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          965 SWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       965 A~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      |++|++|..|.||||+|+..|+.+++++|++++++.    ..|..+|.+..
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            578899999999999999999999999999998776    35777776653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.55  E-value=1.8e-14  Score=175.61  Aligned_cols=135  Identities=16%  Similarity=0.037  Sum_probs=108.1

Q ss_pred             hhhHHHHHHhcCcc--hhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHH---------------------------
Q 001315          846 FKFLLVFSVDRGCC--ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRA---------------------------  896 (1102)
Q Consensus       846 fktLL~FAadrGwc--aVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~A---------------------------  896 (1102)
                      -.+|||+|+.+|..  ++|++||+.++    +++..     +. .|+||||+|                           
T Consensus       212 G~TPLH~Aa~~g~~~~eIVklLLe~GA----DVN~k-----D~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        212 LITPLHTYLITGNVCASVIKKIIELGG----DMDMK-----CV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHcCC----CCCCC-----CC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            45999999999954  89999999653    34432     22 588999975                           


Q ss_pred             ----------HHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHh-cCCcHHHHHHHhCCCCCCCCCC
Q 001315          897 ----------VKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC-TSDSDDIIDALTNDPQEIGPSS  965 (1102)
Q Consensus       897 ----------V~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~-~~g~eeVVeLLL~~p~~iGagA  965 (1102)
                                ++.|+.++|++||++|+            ++|.+|..|+||||+|+. ..++.+++++|++.      ||
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GA------------dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~------GA  343 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGV------------KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY------GN  343 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCC------------ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHc------CC
Confidence                      34566777777777776            579999999999999865 34567899999987      57


Q ss_pred             CCcCCCCCCCCHHHHHHH--------------cCCHHHHHHHHHhhccc----cCCceeee
Q 001315          966 WNSILDASGHSPYSYALM--------------KNNHAYNKLVARKLADR----RNGQVTIP 1008 (1102)
Q Consensus       966 ~vNarD~~G~TPLHyAa~--------------~G~~eiVeLLl~Kia~~----~~~~v~l~ 1008 (1102)
                      ++|++|..|.||||+|+.              .|+.+++++|++++++.    ..|+.+|.
T Consensus       344 DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        344 DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            899999999999999875              37899999999998776    36888886

>PHA02795 ankyrin-like protein; Provisional

Probab=99.55  E-value=1.6e-14  Score=166.64  Aligned_cols=141  Identities=16%  Similarity=0.079  Sum_probs=114.7

Q ss_pred             hhhHHHHHHh--cCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          846 FKFLLVFSVD--RGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       846 fktLL~FAad--rGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      -+++||+++.  .|+.++|++|++.++    +++..        .+.|+||+|+..|+.+||++||++|++..+  .   
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~GA----DIn~~--------~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n--~---  178 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHGA----VIYKI--------ECLNAYFRGICKKESSVVEFILNCGIPDEN--D---  178 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCCC----CCCCC--------CCCCHHHHHHHcCcHHHHHHHHhcCCcccc--c---
Confidence            4699999999  889999999999654    44422        357999999999999999999999984210  0   


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc---
Q 001315          924 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR--- 1000 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~--- 1000 (1102)
                       .+.+..+..|.||+|+|+. ++..+|+++|+++      ||++|.+|..|.||||+|+..|+.+++++|++++++-   
T Consensus       179 -~~~~l~~~~~~t~l~~a~~-~~~~eIve~LIs~------GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~  250 (437)
T PHA02795        179 -VKLDLYKIIQYTRGFLVDE-PTVLEIYKLCIPY------IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAV  250 (437)
T ss_pred             -ccchhhhhhccchhHHHHh-cCHHHHHHHHHhC------cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence             0122234568899999998 4788999999998      6789999999999999999999999999999998775   


Q ss_pred             -cCCceeeeeCc
Q 001315         1001 -RNGQVTIPVGV 1011 (1102)
Q Consensus      1001 -~~~~v~l~i~~ 1011 (1102)
                       ..|..+|.++.
T Consensus       251 d~~G~TpLh~Aa  262 (437)
T PHA02795        251 MSNGYTCLDVAV  262 (437)
T ss_pred             CCCCCCHHHHHH
Confidence             35777777654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.55  E-value=2.2e-14  Score=172.62  Aligned_cols=126  Identities=21%  Similarity=0.129  Sum_probs=103.0

Q ss_pred             hhHHHHHHhcCcc-hhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          847 KFLLVFSVDRGCC-ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK-CRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       847 ktLL~FAadrGwc-aVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g-s~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .++||+|+..+.. .++++|++.+    ++++..     + ..|.||||+|+..| +.+++++|+.+|+           
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~g----adin~~-----d-~~g~TpLh~Aa~~g~~~~~v~~Ll~~ga-----------  332 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERG----ADVNAK-----N-IKGETPLYLMAKNGYDTENIRTLIMLGA-----------  332 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCC----CCCCCc-----C-CCCCCHHHHHHHhCCCHHHHHHHHHcCC-----------
Confidence            4899999998875 5888888854    333422     2 25899999999999 6999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                       ++|.+|..|+||||+|+..++..+++.+|+++      ++++|++|..|.||||+|+.+|+.+++++|+++.++-
T Consensus       333 -din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~------gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        333 -DVNAADRLYITPLHQASTLDRNKDIVITLLEL------GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             -CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc------CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence             46788888899999998876777888888877      5678888999999999999999999998888886654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.55  E-value=1.6e-14  Score=164.62  Aligned_cols=130  Identities=21%  Similarity=0.219  Sum_probs=108.7

Q ss_pred             HHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          851 VFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK---CRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       851 ~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g---s~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ..++.++..++++.||+.++    +++..      ...|.||||+|+..+   +.++|++||++|+            ++
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga----~vn~~------~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga------------di   76 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGA----DVNFR------GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA------------DV   76 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCC----CcccC------CCCCCCHHHHHHHhcCCChHHHHHHHHHCCC------------CC
Confidence            45777889999999999643    33322      225899999999999   9999999999998            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH--HcCCHHHHHHHHHhhccc----c
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL--MKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa--~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      |.++..|.||||+|+..++..+++++|+++      ||++|.+|..|.||||+|+  ..++.+++++|+++.++-    .
T Consensus        77 n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~------ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~  150 (471)
T PHA03095         77 NAPERCGFTPLHLYLYNATTLDVIKLLIKA------GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL  150 (471)
T ss_pred             CCCCCCCCCHHHHHHHcCCcHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence            999999999999999964468999999998      5789999999999999999  667899999999997664    2


Q ss_pred             CCceeee
Q 001315         1002 NGQVTIP 1008 (1102)
Q Consensus      1002 ~~~v~l~ 1008 (1102)
                      .|..+|.
T Consensus       151 ~g~tpL~  157 (471)
T PHA03095        151 YGMTPLA  157 (471)
T ss_pred             CCCCHHH
Confidence            4665554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.54  E-value=2.2e-14  Score=128.69  Aligned_cols=85  Identities=26%  Similarity=0.273  Sum_probs=75.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC
Q 001315          893 LNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  972 (1102)
Q Consensus       893 LH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~  972 (1102)
                      ||+||+.|+.+++++|++.+++            ++.    |.||||+|+.. |..+++++|++.      ++++|.+|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~------------~~~----~~~~l~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD------------INL----GNTALHYAAEN-GNLEIVKLLLEN------GADINSQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST------------TTS----SSBHHHHHHHT-TTHHHHHHHHHT------TTCTT-BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC------------CCC----CCCHHHHHHHc-CCHHHHHHHHHh------cccccccCC
Confidence            8999999999999999998863            344    89999999985 788999999998      568999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          973 SGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       973 ~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|+||||+|+.+|+.+++++|+++.++-
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADV   85 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999986653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.54  E-value=2.3e-14  Score=174.62  Aligned_cols=135  Identities=9%  Similarity=0.025  Sum_probs=108.0

Q ss_pred             hhHHHHHHhc--CcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDR--GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC--RRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadr--GwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs--~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      .++||+|+.+  +..+++++|++.+    ++++..     +. .|.||||+|++.|+  .++|++||++||         
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~G----ADVN~k-----D~-~G~TPLH~Aa~~g~~~~eIVklLLe~GA---------  238 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNG----VNVNLQ-----NN-HLITPLHTYLITGNVCASVIKKIIELGG---------  238 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCCCHHHHHHHHHcCC---------
Confidence            4899998765  4578999999864    444433     22 59999999999995  599999999999         


Q ss_pred             cCCCCCCCCCCCChHHHHHHh------------------------------------cCCcHHHHHHHhCCCCCCCCCCC
Q 001315          923 YIFPPNLAGPGGITPLHLAAC------------------------------------TSDSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~------------------------------------~~g~eeVVeLLL~~p~~iGagA~  966 (1102)
                         ++|++|..|+||||+|+.                                    ..|..++|++|+++      ||+
T Consensus       239 ---DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~------GAd  309 (764)
T PHA02716        239 ---DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP------GVK  309 (764)
T ss_pred             ---CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC------CCc
Confidence               589999999999998742                                    13456788888876      578


Q ss_pred             CcCCCCCCCCHHHHHHH--cCCHHHHHHHHHhhccc----cCCceeeee
Q 001315          967 NSILDASGHSPYSYALM--KNNHAYNKLVARKLADR----RNGQVTIPV 1009 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~--~G~~eiVeLLl~Kia~~----~~~~v~l~i 1009 (1102)
                      +|++|.+|+||||+|+.  .++.+++++|++++++-    ..|..+|.+
T Consensus       310 IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        310 LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence            99999999999999875  46899999999997765    357777764

>PHA02946 ankyin-like protein; Provisional

Probab=99.54  E-value=3.4e-14  Score=164.49  Aligned_cols=123  Identities=19%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             hHHHHHH--hcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          848 FLLVFSV--DRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       848 tLL~FAa--drGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      .+||.++  .....++|+.||+.+    .+++..     +. .|+||||+|++.|+.++|++||++||            
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~G----advn~~-----d~-~G~TpLh~Aa~~g~~eiv~lLL~~GA------------   96 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRG----YSPNET-----DD-DGNYPLHIASKINNNRIVAMLLTHGA------------   96 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCc----CCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHCcC------------
Confidence            5666655  334667899988854    334433     22 58899999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcC-CcHHHHHHHhCCCCCCCCCCCCcC-CCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          926 PPNLAGPGGITPLHLAACTS-DSDDIIDALTNDPQEIGPSSWNSI-LDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~-g~eeVVeLLL~~p~~iGagA~vNa-rD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++|++|..|+||||+|+..+ +..+++++|+++      ||++|. .|.+|.|||| |+..|+.+++++|+++.++
T Consensus        97 din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~------Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad  165 (446)
T PHA02946         97 DPNACDKQHKTPLYYLSGTDDEVIERINLLVQY------GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE  165 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc------CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc
Confidence            46777888888888877642 235677777776      345553 4666666665 4455666666666665443

>PHA02946 ankyin-like protein; Provisional

Probab=99.54  E-value=2.3e-14  Score=165.87  Aligned_cols=149  Identities=14%  Similarity=0.126  Sum_probs=115.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcC--CHHHHHHHHHcCCCCCC-----CC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMK--CRRMVDLLIHYSLTSSN-----DT  919 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~g--s~~IVeLLL~~GAd~~~-----gs  919 (1102)
                      ++|||+|+..|+.++|++||+.+    ++++..     +. .|.||||+|+..+  +.++|++||++|++...     |.
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~G----Adin~~-----d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHG----ADPNAC-----DK-QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCc----CCCCCC-----CC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            58999999999999999999964    344432     23 5899999999876  48999999999996431     11


Q ss_pred             C----------------CCcCCCCCCCCCCCChHHHHHHhcC-CcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH
Q 001315          920 P----------------QKYIFPPNLAGPGGITPLHLAACTS-DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL  982 (1102)
Q Consensus       920 a----------------~~ylfdpnakd~~G~TPLHiAA~~~-g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa  982 (1102)
                      +                ..+..++|.+|..|+||||+|+..+ +..+++++|+++      ||++|.+|.+|.||||||+
T Consensus       143 tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~------Gadin~~d~~G~TpLH~Aa  216 (446)
T PHA02946        143 GPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL------GISPSKPDHDGNTPLHIVC  216 (446)
T ss_pred             cHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHH
Confidence            0                0113478899999999999998743 335789999987      5789999999999999999


Q ss_pred             HcC--CHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          983 MKN--NHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       983 ~~G--~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      .+|  +.+++++|+.. ++.    ..|+.+|.+...
T Consensus       217 ~~~~~~~~iv~lLl~g-adin~~d~~G~TpLh~A~~  251 (446)
T PHA02946        217 SKTVKNVDIINLLLPS-TDVNKQNKFGDSPLTLLIK  251 (446)
T ss_pred             HcCCCcHHHHHHHHcC-CCCCCCCCCCCCHHHHHHH
Confidence            986  78899999864 332    368888877543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.54  E-value=2.1e-14  Score=147.11  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=107.2

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      .++.+|++.+-...|+.||..-++. +  +.      ...+|.||||+|+++|+.+||..||.+||            ++
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~-v--Nt------rD~D~YTpLHRAaYn~h~div~~ll~~gA------------n~  123 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANH-V--NT------RDEDEYTPLHRAAYNGHLDIVHELLLSGA------------NK  123 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccc-c--cc------cccccccHHHHHHhcCchHHHHHHHHccC------------Cc
Confidence            4788999999999999999864331 2  21      23369999999999999999999999999            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHc-CCHHHHHHHHHh--hcccc---
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMK-NNHAYNKLVARK--LADRR--- 1001 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~-G~~eiVeLLl~K--ia~~~--- 1001 (1102)
                      +++...||||||-|+.- +.-+|+.+|+.+      ||||||..+.-+||||+||-. +....+++|+..  |....   
T Consensus       124 ~a~T~~GWTPLhSAckW-nN~~va~~LLqh------gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn  196 (228)
T KOG0512|consen  124 EAKTNEGWTPLHSACKW-NNFEVAGRLLQH------GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN  196 (228)
T ss_pred             ccccccCccchhhhhcc-cchhHHHHHHhc------cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC
Confidence            99999999999999875 566799999998      678999999999999999974 556677777643  44432   


Q ss_pred             CCceeeeeC
Q 001315         1002 NGQVTIPVG 1010 (1102)
Q Consensus      1002 ~~~v~l~i~ 1010 (1102)
                      ++..+++|+
T Consensus       197 ~eeta~~iA  205 (228)
T KOG0512|consen  197 LEETAFDIA  205 (228)
T ss_pred             ccchHHHHH
Confidence            344555553

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=1.5e-14  Score=172.24  Aligned_cols=167  Identities=20%  Similarity=0.147  Sum_probs=125.7

Q ss_pred             CCcHHHHHHHHHHhchhhhcccccccccCCcchhhhhhhHHHHHHhcCcchhHHHHHHHHHhccccC-CCC--ChHHHh-
Q 001315          810 PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSM-DGL--SRESLE-  885 (1102)
Q Consensus       810 ~~SRe~al~FL~ElGWLlqrs~~~~~~~v~~Fqi~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i-~~~--s~e~~~-  885 (1102)
                      ..+.+..+-||.+.|.--+        ..+.|-.+.-.+|||.|++.|+.+.++.+|+.+..+.-.. +..  -++.+. 
T Consensus       197 s~s~e~mEi~l~~~g~~r~--------~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQ--------THINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             hcchhhhhhhhccccchhh--------cccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            3444555556664442221        2344555667799999999999999999999865422100 000  011111 


Q ss_pred             -hhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCC
Q 001315          886 -MLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPS  964 (1102)
Q Consensus       886 -~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGag  964 (1102)
                       ..+|.||||+|++.|+.++|+.||.+|+            +++.++.++.||||+||.+ |.-+.|+-|+.-+   | .
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga------------~I~~kn~d~~spLH~AA~y-g~~ntv~rLL~~~---~-~  331 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGA------------SINSKNKDEESPLHFAAIY-GRINTVERLLQES---D-T  331 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCC------------cccccCCCCCCchHHHHHc-ccHHHHHHHHhCc---C-c
Confidence             1258899999999999999999999999            4788999999999999996 6777888888732   2 3


Q ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 001315          965 SWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR 1001 (1102)
Q Consensus       965 A~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~ 1001 (1102)
                      ...|..|-.|.||||.|+..||..++++|+++++...
T Consensus       332 rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  332 RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            5689999999999999999999999999999987764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.51  E-value=6.6e-14  Score=162.60  Aligned_cols=120  Identities=20%  Similarity=0.204  Sum_probs=100.9

Q ss_pred             HHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          853 SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM-----KCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       853 AadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~-----gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +...+..++|+.||+.+    ++++..     + ..|.||||.|+.+     ++.++|++||++||            ++
T Consensus        45 ~~~~~~~~iv~~Ll~~G----advn~~-----d-~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga------------di  102 (489)
T PHA02798         45 QRDSPSTDIVKLFINLG----ANVNGL-----D-NEYSTPLCTILSNIKDYKHMLDIVKILIENGA------------DI  102 (489)
T ss_pred             hCCCCCHHHHHHHHHCC----CCCCCC-----C-CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC------------CC
Confidence            34445789999999964    444433     2 2589999999864     77999999999999            58


Q ss_pred             CCCCCCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCC---HHHHHHHHHhhccc
Q 001315          928 NLAGPGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN---HAYNKLVARKLADR 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~--g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~---~eiVeLLl~Kia~~ 1000 (1102)
                      |.+|..|.||||+|+...  +..+++++|+++      ||++|++|.+|.||||+|++.|+   .+++++|++++++-
T Consensus       103 N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~------Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        103 NKKNSDGETPLYCLLSNGYINNLEILLFMIEN------GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc------CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            999999999999999843  367899999998      67899999999999999999998   99999999997664

>PHA02741 hypothetical protein; Provisional

Probab=99.50  E-value=5.6e-14  Score=141.81  Aligned_cols=109  Identities=14%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc----HHHHHHHhCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS----DDIIDALTNDPQEIGP  963 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~----eeVVeLLL~~p~~iGa  963 (1102)
                      .|.|+||+|++.|+.++|++|+.....      ..+..++|.+|..|.||||+|+.. ++    .+++++|+++      
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~------~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~------   86 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRG------DCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIEL------   86 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhcc------chhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHc------
Confidence            589999999999999999999754200      001125789999999999999985 54    4789999987      


Q ss_pred             CCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hccc----cCCceeeee
Q 001315          964 SSWNSILDA-SGHSPYSYALMKNNHAYNKLVARK-LADR----RNGQVTIPV 1009 (1102)
Q Consensus       964 gA~vNarD~-~G~TPLHyAa~~G~~eiVeLLl~K-ia~~----~~~~v~l~i 1009 (1102)
                      ++++|.+|. +|.||||+|++.|+.+++++|+++ .++.    ..|..+|.+
T Consensus        87 gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~  138 (169)
T PHA02741         87 GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL  138 (169)
T ss_pred             CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHH
Confidence            578999995 899999999999999999999974 3332    235555544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.49  E-value=9.5e-14  Score=168.00  Aligned_cols=131  Identities=14%  Similarity=0.146  Sum_probs=99.0

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHH--HcCCHHHHHHHHHcCCCCCCCC---CCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAV--KMKCRRMVDLLIHYSLTSSNDT---PQK  922 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV--~~gs~~IVeLLL~~GAd~~~gs---a~~  922 (1102)
                      .++++|+++++.++|++||+.+    ++++..     +. .|+||||+|+  ..|+.+||++||++||+.+...   ..+
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~G----adin~~-----d~-~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g  174 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHG----FDLSVK-----CE-NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYG  174 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcC----CCCCcc-----CC-CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccc
Confidence            5667899999999999999864    444433     22 5999999654  5789999999999999542100   011


Q ss_pred             cCCCCCCCCCCCChHHHHHHhc----------CCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCH--HHH
Q 001315          923 YIFPPNLAGPGGITPLHLAACT----------SDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNH--AYN  990 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~~----------~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~--eiV  990 (1102)
                      |.++ +...+.+.||||+|+..          .++.+||++|+++      ||++|.+|.+|.||||||+.+|+.  ++|
T Consensus       175 ~~~~-~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~------Gadvn~~d~~G~TpLh~A~~~g~~~~eiv  247 (661)
T PHA02917        175 YAYD-DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH------GIKPSSIDKNYCTALQYYIKSSHIDIDIV  247 (661)
T ss_pred             cccc-cccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC------CCCcccCCCCCCcHHHHHHHcCCCcHHHH
Confidence            1111 22334557999999862          2467899999998      678999999999999999999995  799


Q ss_pred             HHHHH
Q 001315          991 KLVAR  995 (1102)
Q Consensus       991 eLLl~  995 (1102)
                      ++|++
T Consensus       248 k~Li~  252 (661)
T PHA02917        248 KLLMK  252 (661)
T ss_pred             HHHHh
Confidence            99985

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.48  E-value=6.2e-14  Score=147.83  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=91.1

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +||+||+.+|+.+||++||+.+++         |+++.+ +..++|.+|++.|.++||++||..++            |+
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAd---------p~~lgk-~resALsLAt~ggytdiV~lLL~r~v------------dV  219 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGAD---------PDALGK-YRESALSLATRGGYTDIVELLLTREV------------DV  219 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCC---------hhhhhh-hhhhhHhHHhcCChHHHHHHHHhcCC------------Cc
Confidence            778888888888888888775433         223334 35577888888888888888887776            46


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |..|.+|-|||-||+. +++.++|+.|++.      |||++.-|+.|+++++.|..-|+. +|+.+++|-..+
T Consensus       220 NvyDwNGgTpLlyAvr-gnhvkcve~Ll~s------GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lk  284 (296)
T KOG0502|consen  220 NVYDWNGGTPLLYAVR-GNHVKCVESLLNS------GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALK  284 (296)
T ss_pred             ceeccCCCceeeeeec-CChHHHHHHHHhc------CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            7788888888888877 5777888888876      567888888888888888888877 667776665544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=5.8e-14  Score=159.67  Aligned_cols=124  Identities=18%  Similarity=0.085  Sum_probs=106.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      .||--|+-.||.+|||.|+..+    ++++..      ....-|||--||.-|+.+||++|+++|+            ||
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~g----a~VN~t------T~TNStPLraACfDG~leivKyLvE~ga------------d~  143 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRG----ASVNDT------TRTNSTPLRAACFDGHLEIVKYLVEHGA------------DP  143 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhc----Cccccc------cccCCccHHHHHhcchhHHHHHHHHcCC------------CC
Confidence            3454566789999999999975    334422      1124599999999999999999999998            68


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++.|..|.|-|||||. +|+.+|+++|++.      +||+|+++..|.|+||.++..||.+++++|++..++-
T Consensus       144 ~IanrhGhTcLmIa~y-kGh~~I~qyLle~------gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  144 EIANRHGHTCLMIACY-KGHVDIAQYLLEQ------GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             cccccCCCeeEEeeec-cCchHHHHHHHHh------CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence            9999999999999987 5899999999997      6789999999999999999999999999999987665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.47  E-value=4.7e-14  Score=152.91  Aligned_cols=106  Identities=22%  Similarity=0.247  Sum_probs=97.6

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|..|||+|++.|+..+||.||..|+            ++|+.+.+.-||||+||. +|+.+||..|++.      .||+
T Consensus        33 hgfsplhwaakegh~aivemll~rga------------rvn~tnmgddtplhlaaa-hghrdivqkll~~------kadv   93 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLSRGA------------RVNSTNMGDDTPLHLAAA-HGHRDIVQKLLSR------KADV   93 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHhccc------------ccccccCCCCcchhhhhh-cccHHHHHHHHHH------hccc
Confidence            48899999999999999999999998            689999999999999998 5999999999987      6899


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      |+.+..|.|||||||.-|+..+.|-|+..++..    ++|+.+|+....
T Consensus        94 navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            999999999999999999999999999987766    579999887765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.46  E-value=2.5e-13  Score=121.90  Aligned_cols=89  Identities=21%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             HHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 001315          850 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  929 (1102)
Q Consensus       850 L~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpna  929 (1102)
                      ||+|+.+|..++++.|++..    .+++        .  |.||||+|+.+|+.+|+++|+++|+            ++|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~----~~~~--------~--~~~~l~~A~~~~~~~~~~~Ll~~g~------------~~~~   54 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG----ADIN--------L--GNTALHYAAENGNLEIVKLLLENGA------------DINS   54 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT----STTT--------S--SSBHHHHHHHTTTHHHHHHHHHTTT------------CTT-
T ss_pred             CHHHHHcCCHHHHHHHHHCc----CCCC--------C--CCCHHHHHHHcCCHHHHHHHHHhcc------------cccc
Confidence            78999999999999999943    2222        1  7899999999999999999999998            5789


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCC
Q 001315          930 AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD  971 (1102)
Q Consensus       930 kd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD  971 (1102)
                      +|..|+||||+|+.. +..+++++|+++      ++++|.+|
T Consensus        55 ~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~n   89 (89)
T PF12796_consen   55 QDKNGNTALHYAAEN-GNLEIVKLLLEH------GADVNIRN   89 (89)
T ss_dssp             BSTTSSBHHHHHHHT-THHHHHHHHHHT------TT-TTSS-
T ss_pred             cCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcC
Confidence            999999999999984 788999999998      56788876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.44  E-value=4.8e-13  Score=161.04  Aligned_cols=136  Identities=15%  Similarity=0.086  Sum_probs=104.4

Q ss_pred             HHHHHHhcC---cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCC
Q 001315          849 LLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDTPQ  921 (1102)
Q Consensus       849 LL~FAadrG---wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs----~~IVeLLL~~GAd~~~gsa~  921 (1102)
                      +|+.=.+.+   ..+++++|++.+    ++++.      . ..|.||||+|+..++    .++|++||++|++.      
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~G----AdIN~------k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~------  408 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNG----ATMDK------T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM------  408 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCC----CCCCc------C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc------
Confidence            666555544   678999999965    44442      1 258999999998875    89999999999832      


Q ss_pred             CcCCCCCCCCCCCChHHHH--HHhcCC---------cHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Q 001315          922 KYIFPPNLAGPGGITPLHL--AACTSD---------SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN  990 (1102)
Q Consensus       922 ~ylfdpnakd~~G~TPLHi--AA~~~g---------~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiV  990 (1102)
                          ++|.+|..|.||||.  ++...+         ..+++++|+++      +|++|++|..|.||||||+..|+.+++
T Consensus       409 ----dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~------GADINakD~~G~TPLh~Aa~~~~~eiv  478 (672)
T PHA02730        409 ----AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY------MDDIDMIDNENKTLLYYAVDVNNIQFA  478 (672)
T ss_pred             ----cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc------ccchhccCCCCCCHHHHHHHhCCHHHH
Confidence                478899999999994  333222         12468999998      678999999999999999999999999


Q ss_pred             HHHHHhhccc---c--CCceeeeeCc
Q 001315          991 KLVARKLADR---R--NGQVTIPVGV 1011 (1102)
Q Consensus       991 eLLl~Kia~~---~--~~~v~l~i~~ 1011 (1102)
                      ++|++++++.   .  .|+.+|.+..
T Consensus       479 e~LI~~GAdIN~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        479 RRLLEYGASVNTTSRSIINTAIQKSS  504 (672)
T ss_pred             HHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence            9999997765   2  2566666653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.43  E-value=3.7e-13  Score=162.01  Aligned_cols=148  Identities=9%  Similarity=0.008  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHhchhhhcccccccccCCcchhhhhhhHHHHHHhcCc----chhHHHHHHHHHhccccCCCCChHHHhhhc
Q 001315          813 REEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGC----CALVKAILDILVEGNLSMDGLSRESLEMLW  888 (1102)
Q Consensus       813 Re~al~FL~ElGWLlqrs~~~~~~~v~~Fqi~RfktLL~FAadrGw----caVVK~LLd~L~~g~v~i~~~s~e~~~~~~  888 (1102)
                      +.++.+||.+.|==+-.            . ..-++|||+|+.++.    .+++++||..+++  .+++..     +. .
T Consensus       358 ~ieIvelLIs~GAdIN~------------k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~--~dIN~k-----d~-~  416 (672)
T PHA02730        358 SIPILRCMLDNGATMDK------------T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH--MAINHV-----SN-N  416 (672)
T ss_pred             cHHHHHHHHHCCCCCCc------------C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC--cccccc-----cc-C
Confidence            45788888888821111            0 122499999998875    6999999996432  233322     23 5


Q ss_pred             CchHHHH---HHHcC---------CHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhC
Q 001315          889 EIQLLNR---AVKMK---------CRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTN  956 (1102)
Q Consensus       889 g~TlLH~---AV~~g---------s~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~  956 (1102)
                      |.||||.   |...+         ..++|++||.+||            ++|++|..|.||||+||.. +..+++++|++
T Consensus       417 G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA------------DINakD~~G~TPLh~Aa~~-~~~eive~LI~  483 (672)
T PHA02730        417 GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD------------DIDMIDNENKTLLYYAVDV-NNIQFARRLLE  483 (672)
T ss_pred             CCchHhHHHHHHhccccccccchhHHHHHHHHHhccc------------chhccCCCCCCHHHHHHHh-CCHHHHHHHHH
Confidence            8999994   44333         2367999999999            5899999999999999985 67789999999


Q ss_pred             CCCCCCCCCCCcCCCC-CCCCHHHHHHHc--CCHHHHHHHHHhhccc
Q 001315          957 DPQEIGPSSWNSILDA-SGHSPYSYALMK--NNHAYNKLVARKLADR 1000 (1102)
Q Consensus       957 ~p~~iGagA~vNarD~-~G~TPLHyAa~~--G~~eiVeLLl~Kia~~ 1000 (1102)
                      +      ||++|++|. .|.||||+|+.+  |+.+++++|+++.+..
T Consensus       484 ~------GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        484 Y------GASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             C------CCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            8      678999997 599999999984  7999999999997665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=1.5e-13  Score=152.83  Aligned_cols=102  Identities=22%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCc----------------------CC---CCCCCC-CCCChHHHH
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSL-TSSNDTPQKY----------------------IF---PPNLAG-PGGITPLHL  940 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GA-d~~~gsa~~y----------------------lf---dpnakd-~~G~TPLHi  940 (1102)
                      +|+|+|||||...|.++|..||+.|. ++..-...+|                      +|   ++|++. ..|+|+|++
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML  346 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence            69999999999999999999999987 2100011222                      23   889875 689999999


Q ss_pred             HHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          941 AACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       941 AA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      |+. +|..++|++|+..      +||||..|++|.|+|.+||.+||.+||+||+..
T Consensus       347 AVS-HGr~d~vk~LLac------gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  347 AVS-HGRVDMVKALLAC------GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhh-cCcHHHHHHHHHc------cCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            999 5889999999986      689999999999999999999999999999865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.41  E-value=1.7e-13  Score=144.50  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=109.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      ..++++|+..-+-+++..|.+...+.+           +. .|.|||.||+..|++++|+|||++||            +
T Consensus       130 ~s~~slsVhql~L~~~~~~~~n~VN~~-----------De-~GfTpLiWAaa~G~i~vV~fLL~~GA------------d  185 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVNNKVNAC-----------DE-FGFTPLIWAAAKGHIPVVQFLLNSGA------------D  185 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhhccccCc-----------cc-cCchHhHHHHhcCchHHHHHHHHcCC------------C
Confidence            378899998888888888877654422           22 49999999999999999999999999            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |++.++.-.|+|.+|.. +|..+||++|++.      +.|||.-|-+|-|||-||++.||.+++|.|+..+++-
T Consensus       186 p~~lgk~resALsLAt~-ggytdiV~lLL~r------~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~  252 (296)
T KOG0502|consen  186 PDALGKYRESALSLATR-GGYTDIVELLLTR------EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV  252 (296)
T ss_pred             hhhhhhhhhhhHhHHhc-CChHHHHHHHHhc------CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc
Confidence            89999999999999987 6899999999987      5689999999999999999999999999999998886

>PHA02917 ankyrin-like protein; Provisional

Probab=99.41  E-value=9.7e-13  Score=159.38  Aligned_cols=137  Identities=10%  Similarity=-0.016  Sum_probs=102.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHh-cc-ccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVE-GN-LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~-g~-v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .+|||+|+..|+..+++.+...|.. ++ ++++          ...+++|.|+.+++.+||++||++|+           
T Consensus        69 ~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~----------~~~~~~~~a~~~~~~e~vk~Ll~~Ga-----------  127 (661)
T PHA02917         69 LTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN----------DFNIFSYMKSKNVDVDLIKVLVEHGF-----------  127 (661)
T ss_pred             CCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC----------CcchHHHHHhhcCCHHHHHHHHHcCC-----------
Confidence            4889988888887666544444322 11 2211          12367788888889999999999988           


Q ss_pred             CCCCCCCCCCChHHHHHH-hcCCcHHHHHHHhCCCCCCCCCCCCcCCCC---CC-----------CCHHHHHHH------
Q 001315          925 FPPNLAGPGGITPLHLAA-CTSDSDDIIDALTNDPQEIGPSSWNSILDA---SG-----------HSPYSYALM------  983 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA-~~~g~eeVVeLLL~~p~~iGagA~vNarD~---~G-----------~TPLHyAa~------  983 (1102)
                       ++|.+|..|+||||+|+ ..+++.+||++|+++      ||++|++|.   .|           .||||||+.      
T Consensus       128 -din~~d~~g~T~L~~~~a~~~~~~eivklLi~~------Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~  200 (661)
T PHA02917        128 -DLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN------GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSE  200 (661)
T ss_pred             -CCCccCCCCccHHHHHHHccCCCHHHHHHHHHc------CCCccccccccccccccccccccccccHHHHHHhhccccc
Confidence             68999999999999654 446899999999998      567887664   34           599999986      


Q ss_pred             -----cCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          984 -----KNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       984 -----~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                           .|+.++|++|++.+++.    .+|..+|.+..
T Consensus       201 ~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~  237 (661)
T PHA02917        201 SDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI  237 (661)
T ss_pred             ccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH
Confidence                 56899999999987766    35766666643

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.41  E-value=3.1e-13  Score=168.39  Aligned_cols=138  Identities=17%  Similarity=0.203  Sum_probs=119.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||.|...||.++++.|++..+.    .+.      +...+.|+||.|...+...++..|+++|+            +
T Consensus       475 ~T~Lhlaaq~Gh~~~~~llle~~~~----~~~------~~~~~l~~lhla~~~~~v~~~~~l~~~ga------------~  532 (1143)
T KOG4177|consen  475 FTPLHLAAQEGHTEVVQLLLEGGAN----DNL------DAKKGLTPLHLAADEDTVKVAKILLEHGA------------N  532 (1143)
T ss_pred             CcchhhhhccCCchHHHHhhhcCCc----cCc------cchhccchhhhhhhhhhHHHHHHHhhcCC------------c
Confidence            4899999999999999999996422    221      12248899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      ++.++..|.||||+|+.+ |+.++|+.|+++      +||++++|+.|+||||.||..|+.++++||.+.+++.    .+
T Consensus       533 v~~~~~r~~TpLh~A~~~-g~v~~VkfLLe~------gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHY-GNVDLVKFLLEH------GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             eehhcccccchHHHHHhc-CCchHHHHhhhC------CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence            789999999999999995 778899999998      6789999999999999999999999999999997766    37


Q ss_pred             CceeeeeCccc
Q 001315         1003 GQVTIPVGVEI 1013 (1102)
Q Consensus      1003 ~~v~l~i~~~~ 1013 (1102)
                      ++..|.|...+
T Consensus       606 g~TpL~iA~~l  616 (1143)
T KOG4177|consen  606 GFTPLHIAVRL  616 (1143)
T ss_pred             CcchhHHHHHh
Confidence            88888777663

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=3.9e-13  Score=153.08  Aligned_cols=119  Identities=19%  Similarity=0.116  Sum_probs=104.0

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +||--||--|+.++||+|++..++    .+     . ....|.|-||+|+.+||.+||++|++.||            |+
T Consensus       119 tPLraACfDG~leivKyLvE~gad----~~-----I-anrhGhTcLmIa~ykGh~~I~qyLle~gA------------Dv  176 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGAD----PE-----I-ANRHGHTCLMIACYKGHVDIAQYLLEQGA------------DV  176 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCC----Cc-----c-cccCCCeeEEeeeccCchHHHHHHHHhCC------------Cc
Confidence            899999999999999999996544    22     1 23369999999999999999999999999            68


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      |.++-.|.|+||.+|+ .|+.+|+++|+.+    |+.  + .+|..|-|||-.|+..|+.++|+.|++-
T Consensus       177 n~ks~kGNTALH~caE-sG~vdivq~Ll~~----ga~--i-~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  177 NAKSYKGNTALHDCAE-SGSVDIVQLLLKH----GAK--I-DVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             chhcccCchHHHhhhh-cccHHHHHHHHhC----Cce--e-eecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999999999999 5899999999998    432  2 3677799999999999999999999853

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.39  E-value=6.8e-13  Score=134.16  Aligned_cols=104  Identities=13%  Similarity=0.047  Sum_probs=84.1

Q ss_pred             cCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHH---HHHHHhCCCCC
Q 001315          888 WEIQLLNRAVKMKCR----RMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDD---IIDALTNDPQE  960 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~----~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~ee---VVeLLL~~p~~  960 (1102)
                      .+.+.||+|++.|+.    +++++|+++|+            +++.+|..|+||||+||.. |..+   ++++|++.   
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~------------~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~---   82 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGH------------LLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNM---   82 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcch------------hhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHc---
Confidence            467899999999998    77778888887            4688899999999999986 4433   48999987   


Q ss_pred             CCCCCCCcCCC-CCCCCHHHHHHHcCCHHHHHHHHH-hhccc----cCCceeeeeC
Q 001315          961 IGPSSWNSILD-ASGHSPYSYALMKNNHAYNKLVAR-KLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       961 iGagA~vNarD-~~G~TPLHyAa~~G~~eiVeLLl~-Kia~~----~~~~v~l~i~ 1010 (1102)
                         ++++|++| ..|.||||+|+..|+.+++++|+. ..++.    ..|..+|.+.
T Consensus        83 ---Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A  135 (166)
T PHA02743         83 ---GADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA  135 (166)
T ss_pred             ---CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHH
Confidence               57899999 589999999999999999999995 44443    2455555554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.39  E-value=3.4e-12  Score=115.87  Aligned_cols=119  Identities=24%  Similarity=0.249  Sum_probs=100.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+..++..+++.|++.+..    ....     +. .|.|+||.|+..++.+++++|+++++            +
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~----~~~~-----~~-~g~~~l~~a~~~~~~~~~~~ll~~~~------------~   65 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGAD----VNAK-----DN-DGRTPLHLAAKNGHLEIVKLLLEKGA------------D   65 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC----CCcc-----CC-CCCcHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            4899999999999999999986432    1111     22 58899999999999999999999987            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  994 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl  994 (1102)
                      ++..+..|.||||+|+.. +..+++++|++.      +.+++..|..|.||+|+|...++.+++++|+
T Consensus        66 ~~~~~~~~~~~l~~a~~~-~~~~~~~~L~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          66 VNARDKDGNTPLHLAARN-GNLDVVKLLLKH------GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ccccCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            577788899999999986 668899999987      3457889999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=1.9e-12  Score=127.90  Aligned_cols=127  Identities=20%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC-----HHHHHHHHHcCCCCCCCC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC-----RRMVDLLIHYSLTSSNDT  919 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs-----~~IVeLLL~~GAd~~~gs  919 (1102)
                      +...++++++..+..+++++|+..++    +++..      ...|.|+||+|+..++     .+++++||++|++.    
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~------~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~----  137 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGA----DVNAK------DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL----  137 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCC----Ccccc------cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC----
Confidence            35689999999999999988888643    33322      3369999999999999     99999999999820    


Q ss_pred             CCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          920 PQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       920 a~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                           ..++.+|..|.||||+|+.. |..+++++|+..      +++++.+|..|.|+||+|+..|+.+++++++++.
T Consensus       138 -----~~~~~~~~~g~tpl~~A~~~-~~~~~~~~ll~~------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         138 -----DVNNLRDEDGNTPLHWAALN-GDADIVELLLEA------GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             -----CCccccCCCCCchhHHHHHc-CchHHHHHHHhc------CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                 03567899999999999985 677899999987      5678999999999999999999999999999976

>PHA02792 ankyrin-like protein; Provisional

Probab=99.37  E-value=1.2e-12  Score=156.58  Aligned_cols=133  Identities=14%  Similarity=0.088  Sum_probs=106.8

Q ss_pred             HHHH-HHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHH-cCCHHHHHHHHHcCCCCC----CCCC--
Q 001315          849 LLVF-SVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVK-MKCRRMVDLLIHYSLTSS----NDTP--  920 (1102)
Q Consensus       849 LL~F-AadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~-~gs~~IVeLLL~~GAd~~----~gsa--  920 (1102)
                      ++++ |..+|+.++|++|+..++    +++..     +. ++.||||+|+. .++.+||++||++||+.+    .|.+  
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GA----dvN~~-----~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~  143 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGL----EINSI-----KN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKII  143 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCC----Ccccc-----cC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchh
Confidence            6655 778999999999999654    44433     23 57899999976 799999999999999632    2211  


Q ss_pred             ------------------CCcCCCCCCCCCCCChHHHHHHhcC---C---cHHHHHHHhCCCCCCCCCCCCcCCCCCCCC
Q 001315          921 ------------------QKYIFPPNLAGPGGITPLHLAACTS---D---SDDIIDALTNDPQEIGPSSWNSILDASGHS  976 (1102)
Q Consensus       921 ------------------~~ylfdpnakd~~G~TPLHiAA~~~---g---~eeVVeLLL~~p~~iGagA~vNarD~~G~T  976 (1102)
                                        ..|.+.+|.+|..|.||||+|+..+   +   +.+|+++|+++      ||+++.+|..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~------g~~~~~~d~~g~t  217 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH------EKEMRYYTYREHT  217 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC------CCCcCccCCCCCh
Confidence                              1223467889999999999999853   1   58999999999      5679999999999


Q ss_pred             HHHHHHHcC--CHHHHHHHHHhh
Q 001315          977 PYSYALMKN--NHAYNKLVARKL  997 (1102)
Q Consensus       977 PLHyAa~~G--~~eiVeLLl~Ki  997 (1102)
                      |||||+.+.  ..+++++|++-+
T Consensus       218 ~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        218 TLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             HHHHHHHcccchHHHHHHHHhcc
Confidence            999999999  889999998753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.37  E-value=1.9e-12  Score=143.74  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=88.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCC----CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLA----GPGGITPLHLAACTSDSDDIIDALTNDPQEIGP  963 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnak----d~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGa  963 (1102)
                      +-.++||.|++.|+.++|++||++||            ++|.+    +..|.||||+||.. +..+++++|+++      
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GA------------diN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~------   92 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGA------------DPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRY------   92 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCC------------CccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------
Confidence            35578999999999999999999999            46666    46899999999985 778899999998      


Q ss_pred             CCCCcCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          964 SSWNSILD-ASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       964 gA~vNarD-~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      ||++|+++ ..|.||||+|+..|+.+++++|++++++-    ..|..+|.++
T Consensus        93 GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A  144 (300)
T PHA02884         93 GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA  144 (300)
T ss_pred             CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            67899975 57999999999999999999999998765    2466666554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.37  E-value=5.7e-13  Score=162.30  Aligned_cols=131  Identities=18%  Similarity=0.087  Sum_probs=100.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCC--hHH------HhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLS--RES------LEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND  918 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s--~e~------~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~g  918 (1102)
                      .+|||+|+.+|+.++|++||+.+++    ++...  ...      -....|.||||.|+..|+.++|++|+++|+     
T Consensus       129 ~TpLhlAa~~~~~eiVklLL~~GAd----v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga-----  199 (743)
T TIGR00870       129 ITALHLAAHRQNYEIVKLLLERGAS----VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA-----  199 (743)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCC----CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc-----
Confidence            4999999999999999999997544    22110  000      001248899999999999999999999998     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCC--------cHHHHHHHhCCCCCCCCCCCC----cCCCCCCCCHHHHHHHcCC
Q 001315          919 TPQKYIFPPNLAGPGGITPLHLAACTSD--------SDDIIDALTNDPQEIGPSSWN----SILDASGHSPYSYALMKNN  986 (1102)
Q Consensus       919 sa~~ylfdpnakd~~G~TPLHiAA~~~g--------~eeVVeLLL~~p~~iGagA~v----NarD~~G~TPLHyAa~~G~  986 (1102)
                             ++|++|..|+||||+|+..+.        ...+.+++++..+.   ..+.    +.+|.+|.||||+|+..|+
T Consensus       200 -------din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~---~~~~~el~~i~N~~g~TPL~~A~~~g~  269 (743)
T TIGR00870       200 -------DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK---LRDSKELEVILNHQGLTPLKLAAKEGR  269 (743)
T ss_pred             -------chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc---cCChHhhhhhcCCCCCCchhhhhhcCC
Confidence                   579999999999999998531        22355666554221   1223    7789999999999999999


Q ss_pred             HHHHHHHHHh
Q 001315          987 HAYNKLVARK  996 (1102)
Q Consensus       987 ~eiVeLLl~K  996 (1102)
                      .+++++|+..
T Consensus       270 ~~l~~lLL~~  279 (743)
T TIGR00870       270 IVLFRLKLAI  279 (743)
T ss_pred             ccHHHHHHHH
Confidence            9999988874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.35  E-value=2e-12  Score=132.81  Aligned_cols=116  Identities=20%  Similarity=0.146  Sum_probs=99.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +|||-|+++|+..+|+.||..+++..         +. ...||||||-||+.++.+++-+||.+|+            ||
T Consensus        99 TpLHRAaYn~h~div~~ll~~gAn~~---------a~-T~~GWTPLhSAckWnN~~va~~LLqhga------------DV  156 (228)
T KOG0512|consen   99 TPLHRAAYNGHLDIVHELLLSGANKE---------AK-TNEGWTPLHSACKWNNFEVAGRLLQHGA------------DV  156 (228)
T ss_pred             cHHHHHHhcCchHHHHHHHHccCCcc---------cc-cccCccchhhhhcccchhHHHHHHhccC------------cc
Confidence            89999999999999999998765422         12 3359999999999999999999999999            58


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN  990 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiV  990 (1102)
                      |+...+-+||||+||...+..+.+++|+.++..     ..-.++..|.||+.+|++.+-..++
T Consensus       157 nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi-----~pg~~nn~eeta~~iARRT~~s~~l  214 (228)
T KOG0512|consen  157 NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI-----HPGLKNNLEETAFDIARRTSMSHYL  214 (228)
T ss_pred             cccccccchhhHHhhcccchHHHHHHHhhcccc-----ChhhhcCccchHHHHHHHhhhhHHH
Confidence            999999999999999988888899999987532     3457788999999999998866655

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.34  E-value=1.6e-12  Score=141.10  Aligned_cols=107  Identities=23%  Similarity=0.240  Sum_probs=93.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      .|||||+..|+.++|+.||..++.    ++..     ++ +..||||+|+..||.+||..||++.+            |+
T Consensus        36 splhwaakegh~aivemll~rgar----vn~t-----nm-gddtplhlaaahghrdivqkll~~ka------------dv   93 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGAR----VNST-----NM-GDDTPLHLAAAHGHRDIVQKLLSRKA------------DV   93 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhcccc----cccc-----cC-CCCcchhhhhhcccHHHHHHHHHHhc------------cc
Confidence            799999999999999999997543    3322     33 67899999999999999999999988            58


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHH
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM  983 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~  983 (1102)
                      |+.+..|.||||||+- -|.+.|.|-|++.      ||-|+..+++|.|||+.|.-
T Consensus        94 navnehgntplhyacf-wgydqiaedli~~------ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACF-WGYDQIAEDLISC------GAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             chhhccCCCchhhhhh-hcHHHHHHHHHhc------cceeeecccCCCCchhhhch
Confidence            9999999999999986 6899999999987      45689999999999999854

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.33  E-value=8.5e-13  Score=130.38  Aligned_cols=109  Identities=13%  Similarity=0.059  Sum_probs=79.6

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcH---HHHHHHhCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSD---DIIDALTNDPQEIGPS  964 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~e---eVVeLLL~~p~~iGag  964 (1102)
                      .|.||||+||+.|+  ++++|+..+....   ..  ...++.+|..|+||||+||.. +..   +++++|+++      +
T Consensus        16 ~g~tpLh~A~~~g~--~~~l~~~~~~~~~---~~--~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~------g   81 (154)
T PHA02736         16 EGENILHYLCRNGG--VTDLLAFKNAISD---EN--RYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEW------G   81 (154)
T ss_pred             CCCCHHHHHHHhCC--HHHHHHHHHHhcc---hh--HHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHc------C
Confidence            59999999999998  5677665543110   00  001345788999999999985 443   468889987      5


Q ss_pred             CCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHh-hccc----cCCceeeeeC
Q 001315          965 SWNSILDA-SGHSPYSYALMKNNHAYNKLVARK-LADR----RNGQVTIPVG 1010 (1102)
Q Consensus       965 A~vNarD~-~G~TPLHyAa~~G~~eiVeLLl~K-ia~~----~~~~v~l~i~ 1010 (1102)
                      +++|.+|. +|.||||+|+..|+.+++++|+.+ .++.    ..|+.+|.+.
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            78999984 999999999999999999999874 3332    2455555543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.33  E-value=6.2e-12  Score=150.45  Aligned_cols=145  Identities=14%  Similarity=0.036  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHhchhhhcccccccccCCcchhhhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhh-cCch
Q 001315          813 REEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEML-WEIQ  891 (1102)
Q Consensus       813 Re~al~FL~ElGWLlqrs~~~~~~~v~~Fqi~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~-~g~T  891 (1102)
                      +-++.+||.+.|--+-+.              .....++.|+.+|..++|++|++.+++    ++..     +.. .+.|
T Consensus       320 ~ieiIK~LId~Ga~~~r~--------------~~~n~~~~Aa~~gn~eIVelLIs~GAD----IN~k-----D~~g~~~T  376 (631)
T PHA02792        320 YINVIKCMIDEGATLYRF--------------KHINKYFQKFDNRDPKVVEYILKNGNV----VVED-----DDNIINIM  376 (631)
T ss_pred             cHHHHHHHHHCCCccccC--------------CcchHHHHHHHcCCHHHHHHHHHcCCc----hhhh-----cCCCCChh
Confidence            458889999998443210              022457789999999999999996543    3322     221 1469


Q ss_pred             HHHHHHHcCCH---HHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          892 LLNRAVKMKCR---RMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       892 lLH~AV~~gs~---~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      |||.|+..+..   +++++||++||            ++|.+|..|+||||+|+.. +..+++++|+++      ||++|
T Consensus       377 pLh~A~~n~~~~v~~IlklLIs~GA------------DIN~kD~~G~TPLh~Aa~~-~n~eivelLLs~------GADIN  437 (631)
T PHA02792        377 PLFPTLSIHESDVLSILKLCKPYID------------DINKIDKHGRSILYYCIES-HSVSLVEWLIDN------GADIN  437 (631)
T ss_pred             HHHHHHHhccHhHHHHHHHHHhcCC------------ccccccccCcchHHHHHHc-CCHHHHHHHHHC------CCCCC
Confidence            99998887765   46899999999            5799999999999999985 678899999998      57899


Q ss_pred             CCCCCCCCHHHHHHH---cC-------CHHHHHHHHHhhcc
Q 001315          969 ILDASGHSPYSYALM---KN-------NHAYNKLVARKLAD  999 (1102)
Q Consensus       969 arD~~G~TPLHyAa~---~G-------~~eiVeLLl~Kia~  999 (1102)
                      ++|..|.||||+|+.   ++       +.+++++|++++.+
T Consensus       438 ~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        438 ITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             CcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999986   22       25567777777544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.33  E-value=3.7e-12  Score=155.29  Aligned_cols=131  Identities=21%  Similarity=0.160  Sum_probs=86.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCC----CChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDG----LSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~----~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      +++||.|+. ++...+..++..+.......+.    ......+...|.||||+|+.+|+.++|++||++||+.+......
T Consensus        83 ~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~  161 (743)
T TIGR00870        83 DTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD  161 (743)
T ss_pred             hHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc
Confidence            389998886 3444445555444332211000    00000112258999999999999999999999999642100000


Q ss_pred             -cCCCC-CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC
Q 001315          923 -YIFPP-NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  985 (1102)
Q Consensus       923 -ylfdp-nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G  985 (1102)
                       +.... ......|.||||+||.. ++.+++++|+++      +||+|++|..|.||||+|+..+
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~~-~~~~iv~lLl~~------gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAACL-GSPSIVALLSED------PADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHHh-CCHHHHHHHhcC------CcchhhHhhhhhHHHHHHHhhh
Confidence             00000 01124699999999995 788999999998      4689999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.32  E-value=7.2e-12  Score=154.90  Aligned_cols=91  Identities=21%  Similarity=0.278  Sum_probs=83.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      ..++||.||..|+.++++.||++|+            ++|.+|..|.||||+||.. |+.+++++|+++      +|++|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~------------d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~------gadin  585 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKL------------DPDIGDSKGRTPLHIAASK-GYEDCVLVLLKH------ACNVH  585 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhc------CCCCC
Confidence            4688999999999999999999998            5899999999999999985 889999999997      57899


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          969 ILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      .+|.+|.||||+|+..||.+++++|++..+
T Consensus       586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~  615 (823)
T PLN03192        586 IRDANGNTALWNAISAKHHKIFRILYHFAS  615 (823)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHhcCc
Confidence            999999999999999999999999887644

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.32  E-value=2.5e-12  Score=148.66  Aligned_cols=148  Identities=18%  Similarity=0.137  Sum_probs=122.1

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC----CCC----
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS----NDT----  919 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~----~gs----  919 (1102)
                      +.||-+|.-++.++|++|++.+++    ++..     +. .+|||||.|+..||..||++||.+||+..    +|.    
T Consensus        75 Talhq~~id~~~e~v~~l~e~ga~----Vn~~-----d~-e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~d  144 (527)
T KOG0505|consen   75 TALHQACIDDNLEMVKFLVENGAN----VNAQ-----DN-EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYD  144 (527)
T ss_pred             hhHHHHHhcccHHHHHHHHHhcCC----cccc-----cc-ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccc
Confidence            789999999999999999998644    3322     23 69999999999999999999999999631    110    


Q ss_pred             -----C-----------C-----------------------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCC
Q 001315          920 -----P-----------Q-----------------------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQE  960 (1102)
Q Consensus       920 -----a-----------~-----------------------~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~  960 (1102)
                           +           .                       .-.-..++.+..|-|.||+||. +|..++.++|+.+   
T Consensus       145 l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa-~Gy~e~~~lLl~a---  220 (527)
T KOG0505|consen  145 LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA-NGYTEVAALLLQA---  220 (527)
T ss_pred             cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh-hhHHHHHHHHHHh---
Confidence                 0           0                       0011357777889999999999 4899999999997   


Q ss_pred             CCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          961 IGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       961 iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                         +.+++++|.+|+||||+||.=|+.+++++|+..+++.    ++|+-++++..+
T Consensus       221 ---g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  221 ---GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ---ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence               4579999999999999999999999999999997776    589999999877

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.26  E-value=3.7e-11  Score=109.06  Aligned_cols=91  Identities=25%  Similarity=0.228  Sum_probs=82.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.|+||+|++.++.++++.|++++++            .+..+..|.||||+|+.. +..+++++|+..      ++++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~------------~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~------~~~~   66 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGAD------------VNAKDNDGRTPLHLAAKN-GHLEIVKLLLEK------GADV   66 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCc
Confidence            589999999999999999999999873            467888999999999996 566899999987      3468


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                      +..|..|.||+|+|+..++.+++++|+++.
T Consensus        67 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          67 NARDKDGNTPLHLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            899999999999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.21  E-value=3.9e-11  Score=145.65  Aligned_cols=87  Identities=21%  Similarity=0.239  Sum_probs=81.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      +.||.|+..|+.++|++||++|+            ++|.+|..|.||||+||.. |+.++|++|++.      +|++|++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Ga------------din~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~------Gadvn~~  144 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGA------------DPNCRDYDGRTPLHIACAN-GHVQVVRVLLEF------GADPTLL  144 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC------------CCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHC------CCCCCCC
Confidence            56999999999999999999998            5789999999999999985 888999999997      5789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      |.+|.||||+|+..|+.+++++|+++
T Consensus       145 d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        145 DKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            99999999999999999999999988

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.17  E-value=4.3e-11  Score=142.50  Aligned_cols=120  Identities=21%  Similarity=0.116  Sum_probs=105.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||-|+-+|+..++++||+.=    .-.     +..+. .|++|||+|++.|+.++|++||.++.            .+
T Consensus        51 Talhha~Lng~~~is~llle~e----a~l-----dl~d~-kg~~plhlaaw~g~~e~vkmll~q~d------------~~  108 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYE----ALL-----DLCDT-KGILPLHLAAWNGNLEIVKMLLLQTD------------IL  108 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcch----hhh-----hhhhc-cCcceEEehhhcCcchHHHHHHhccc------------CC
Confidence            8999999999999999999941    111     12232 58999999999999999999999985            47


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      |+....|.||||+||+ .++.+||.+|+.+      +||.=.+|..+.|+|+.|++-|..++|++|+++
T Consensus       109 na~~~e~~tplhlaaq-hgh~dvv~~Ll~~------~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  109 NAVNIENETPLHLAAQ-HGHLEVVFYLLKK------NADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             CcccccCcCccchhhh-hcchHHHHHHHhc------CCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            9999999999999999 5888999999998      567888999999999999999999999999887

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.16  E-value=4.5e-11  Score=99.76  Aligned_cols=54  Identities=31%  Similarity=0.401  Sum_probs=44.4

Q ss_pred             CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 001315          934 GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA  994 (1102)
Q Consensus       934 G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl  994 (1102)
                      |+||||+||. .|..+++++|+++      ++++|.+|.+|.||||||+++||.+++++|+
T Consensus         1 g~t~lh~A~~-~g~~~~~~~Ll~~------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAAR-SGNLEIVKLLLEH------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHH-TT-HHHHHHHHHT------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHH-hCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999 5889999999987      5679999999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.16  E-value=2.2e-11  Score=103.27  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=31.4

Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHH
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYA  981 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyA  981 (1102)
                      ++|.+|..|.||||+||.. |+.++|++|+..      +++++++|+.|+||||||
T Consensus         8 ~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~------g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARY-GHSEVVRLLLQN------GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHH-T-HHHHHHHHHC------T--TT---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHC------cCCCCCCcCCCCCHHHhC
Confidence            6899999999999999995 788999999966      678999999999999998

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.11  E-value=3.7e-11  Score=143.07  Aligned_cols=148  Identities=20%  Similarity=0.219  Sum_probs=115.2

Q ss_pred             HHHHHHhcCcchhHHHHHHHHHhc-cccCCCC--ChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          849 LLVFSVDRGCCALVKAILDILVEG-NLSMDGL--SRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       849 LL~FAadrGwcaVVK~LLd~L~~g-~v~i~~~--s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -|.-|++.|....+.+||..-.-+ +.-....  ..+..+...|.|+||.||.+|+.+|+++|+++.+            
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea------------   73 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA------------   73 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchh------------
Confidence            456788999999999998852111 0000000  1112233369999999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      -++..|..|.+|||+||.. |+.++|++|+.+      ++.+|+....|.||||.|+++||.+++++|+++.++.    .
T Consensus        74 ~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q------~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn  146 (854)
T KOG0507|consen   74 LLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQ------TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN  146 (854)
T ss_pred             hhhhhhccCcceEEehhhc-CcchHHHHHHhc------ccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCc
Confidence            3577788999999999996 667899999987      2458999999999999999999999999999999988    2


Q ss_pred             CCceeeeeCccccc
Q 001315         1002 NGQVTIPVGVEIEQ 1015 (1102)
Q Consensus      1002 ~~~v~l~i~~~~~~ 1015 (1102)
                      +++.+|++...+..
T Consensus       147 s~~t~ldlA~qfgr  160 (854)
T KOG0507|consen  147 SKETVLDLASRFGR  160 (854)
T ss_pred             ccccHHHHHHHhhh
Confidence            57788888766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.06  E-value=6.3e-10  Score=110.04  Aligned_cols=106  Identities=24%  Similarity=0.289  Sum_probs=88.9

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc-----HHHHHHHhCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS-----DDIIDALTNDPQEIG  962 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~-----eeVVeLLL~~p~~iG  962 (1102)
                      .+.+++|.|+..+...++.+|+..|+            +++.++..|.||||+|+.. ++     .+++++|+..    |
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~----g  134 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGA------------DVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEA----G  134 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCC------------CcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHc----C
Confidence            47899999999999999999999998            5789999999999999985 66     7899999997    3


Q ss_pred             C-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          963 P-SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       963 a-gA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      + ....+.+|.+|.||||+|+..|+.+++++|++..++.    ..|+..+.+.
T Consensus       135 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a  187 (235)
T COG0666         135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA  187 (235)
T ss_pred             CCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhh
Confidence            2 0257777999999999999999999999999996654    2344444443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.06  E-value=2.5e-10  Score=95.32  Aligned_cols=54  Identities=30%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHh
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT  955 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL  955 (1102)
                      |+||||+|++.|+.++|++|+++|+            ++|.+|..|.||||+|+.. |+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~------------din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA------------DINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS------------GTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC------------CCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            6899999999999999999999987            5788999999999999985 7889999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.02  E-value=9.9e-10  Score=133.56  Aligned_cols=113  Identities=16%  Similarity=0.114  Sum_probs=93.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      ...|+.|+..|..+.++.||+.+    ++++..     +. .|.||||+||.+|+.++|++||++|+            +
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~G----adin~~-----d~-~G~TpLh~Aa~~g~~eiv~~LL~~Ga------------d  140 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGG----ADPNCR-----DY-DGRTPLHIACANGHVQVVRVLLEFGA------------D  140 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCC----CCCCCc-----CC-CCCcHHHHHHHCCCHHHHHHHHHCCC------------C
Confidence            45688999999999999999854    344422     23 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCC-CCCCCCCCCcCCCCCCCCHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDP-QEIGPSSWNSILDASGHSPYSYAL  982 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p-~~iGagA~vNarD~~G~TPLHyAa  982 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++. ..+..+|+++..+.+|.||+..+.
T Consensus       141 vn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        141 PTLLDKDGKTPLELAEEN-GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCCCCCCHHHHHHHC-CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            799999999999999985 7889999999862 124457788999999988877665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.02  E-value=3.9e-10  Score=106.47  Aligned_cols=95  Identities=27%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC
Q 001315          893 LNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  972 (1102)
Q Consensus       893 LH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~  972 (1102)
                      ..|++++|..+-|+-.+..|-+            +|-. .+|+|||||||-+ |..+|+++|+.-      ||+++.+|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~n------------Vn~~-~ggR~plhyAAD~-GQl~ilefli~i------GA~i~~kDK   65 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLN------------VNEI-YGGRTPLHYAADY-GQLSILEFLISI------GANIQDKDK   65 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcccc------------HHHH-hCCcccchHhhhc-chHHHHHHHHHh------ccccCCccc
Confidence            6789999999999999988753            3433 3899999999996 788899999985      678999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceee
Q 001315          973 SGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTI 1007 (1102)
Q Consensus       973 ~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l 1007 (1102)
                      .|.|||--|...||.+.|++|++++++|    +.|+..+
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHH
Confidence            9999999999999999999999999998    2455444

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.00  E-value=1.8e-09  Score=118.02  Aligned_cols=125  Identities=17%  Similarity=0.198  Sum_probs=103.1

Q ss_pred             hhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          844 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       844 ~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      +--+.+|.-+++++..+.+..||....+  ++  -     ++. .|+++|..|+++|+.++|++||++|+|++       
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~--vn--~-----~D~-sGMs~LahAaykGnl~~v~lll~~gaDvN-------   72 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLSTVRQ--VN--Q-----RDP-SGMSVLAHAAYKGNLTLVELLLELGADVN-------   72 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHHhhh--hh--c-----cCC-CcccHHHHHHhcCcHHHHHHHHHhCCCcC-------
Confidence            3445788889999999999999997543  21  1     122 59999999999999999999999999532       


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          924 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                          +-++..+.||||+||. +|+.+|..+|++.      ||.....+.-|+|+-..||.-||++.|.++-..
T Consensus        73 ----~~qhg~~YTpLmFAAL-SGn~dvcrlllda------Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   73 ----DKQHGTLYTPLMFAAL-SGNQDVCRLLLDA------GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ----cccccccccHHHHHHH-cCCchHHHHHHhc------cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence                2356779999999998 5888999999987      455778889999999999999999999887555

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=1.1e-09  Score=126.26  Aligned_cols=91  Identities=25%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      -+|.-|+..|-.++|.-.|..--            ||...+..|+||||-|++. |+.+||++|++.      ||+||+.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~------------DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~------ganVNa~  612 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVT------------DPSQPNDEGITALHNAICA-GHYEIVKFLIEF------GANVNAA  612 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhc------------CCCCCCccchhHHhhhhhc-chhHHHHHHHhc------CCcccCc
Confidence            45666888899999999886533            5677788999999999994 888899999987      6789999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |.+||||||+||.-|+.-+++.|++.++..
T Consensus       613 DSdGWTPLHCAASCNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  613 DSDGWTPLHCAASCNNVPMCKQLVESGAAV  642 (752)
T ss_pred             cCCCCchhhhhhhcCchHHHHHHHhccceE
Confidence            999999999999999999999999887763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.96  E-value=2.1e-09  Score=129.63  Aligned_cols=140  Identities=21%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             hhHHHHHHhc---CcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          847 KFLLVFSVDR---GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       847 ktLL~FAadr---GwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      +++||.|.-+   ++.++++.||++--.  +-.+...   -+...|.|+||+|+.+.+.++|++||+.|||+... +.+-
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~--lind~~~---~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR-a~G~  217 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPK--LINDIYT---SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR-ACGA  217 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHH--Hhhhhhh---hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH-hhcc
Confidence            4899998874   466999999997432  1112111   12336999999999999999999999999975311 1111


Q ss_pred             CCCCCCCCC------------CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Q 001315          924 IFPPNLAGP------------GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNK  991 (1102)
Q Consensus       924 lfdpnakd~------------~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVe  991 (1102)
                      =|.++-+..            -|..||-+||+. +.++|+.+|+.+      +||+|++|..|.|-||.-...-..++-.
T Consensus       218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrlLl~~------gAd~~aqDS~GNTVLH~lVi~~~~~My~  290 (782)
T KOG3676|consen  218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRLLLAH------GADPNAQDSNGNTVLHMLVIHFVTEMYD  290 (782)
T ss_pred             ccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHHHHhc------CCCCCccccCCChHHHHHHHHHHHHHHH
Confidence            133333322            378899999997 677899999987      5778888888888888777776666667


Q ss_pred             HHHHhhcc
Q 001315          992 LVARKLAD  999 (1102)
Q Consensus       992 LLl~Kia~  999 (1102)
                      +++.+.+.
T Consensus       291 ~~L~~ga~  298 (782)
T KOG3676|consen  291 LALELGAN  298 (782)
T ss_pred             HHHhcCCC
Confidence            77766655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.92  E-value=2.6e-09  Score=101.03  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=86.3

Q ss_pred             HHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 001315          850 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  929 (1102)
Q Consensus       850 L~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpna  929 (1102)
                      .+|++.+|-..-||.....+    .+++       +..+|++|||+|+-.|..+|.++||.-||            +++.
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g----~nVn-------~~~ggR~plhyAAD~GQl~ilefli~iGA------------~i~~   62 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEG----LNVN-------EIYGGRTPLHYAADYGQLSILEFLISIGA------------NIQD   62 (117)
T ss_pred             HhhhhccCcHHHHHHHHHcc----ccHH-------HHhCCcccchHhhhcchHHHHHHHHHhcc------------ccCC
Confidence            56889999888888776643    3333       44589999999999999999999999999            5789


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHH
Q 001315          930 AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYA  981 (1102)
Q Consensus       930 kd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyA  981 (1102)
                      +|+-|.|||--|+. .|+.+.|++|+..      ||+...+--+|.|.+..+
T Consensus        63 kDKygITPLLsAvw-EGH~~cVklLL~~------GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   63 KDKYGITPLLSAVW-EGHRDCVKLLLQN------GADRTIHAPDGTALIEAT  107 (117)
T ss_pred             ccccCCcHHHHHHH-HhhHHHHHHHHHc------CcccceeCCCchhHHhhc
Confidence            99999999999987 5999999999998      567888889998887765

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.91  E-value=2.1e-09  Score=124.87  Aligned_cols=126  Identities=18%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             HHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC
Q 001315          852 FSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG  931 (1102)
Q Consensus       852 FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd  931 (1102)
                      -|+..|-.+=|+.||...+.    .+-.      ..+|.|+||-||.-.+.+||++|+++|+            +||+.|
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~----~~~~------n~DglTalhq~~id~~~e~v~~l~e~ga------------~Vn~~d  103 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGAS----PNLC------NVDGLTALHQACIDDNLEMVKFLVENGA------------NVNAQD  103 (527)
T ss_pred             hccccccHHHHHHHhccCCC----cccc------CCccchhHHHHHhcccHHHHHHHHHhcC------------Cccccc
Confidence            47888889989999986432    2222      2369999999999999999999999999            589999


Q ss_pred             CCCChHHHHHHhcCCcHHHHHHHhCCCCCC--------------------------------------------------
Q 001315          932 PGGITPLHLAACTSDSDDIIDALTNDPQEI--------------------------------------------------  961 (1102)
Q Consensus       932 ~~G~TPLHiAA~~~g~eeVVeLLL~~p~~i--------------------------------------------------  961 (1102)
                      ..||||||.||. -++.+|+.+|+++++.+                                                  
T Consensus       104 ~e~wtPlhaaas-cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~  182 (527)
T KOG0505|consen  104 NEGWTPLHAAAS-CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDAR  182 (527)
T ss_pred             cccCCcchhhcc-cccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHH
Confidence            999999999998 58999999999986511                                                  


Q ss_pred             ---CCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          962 ---GPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       962 ---GagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                         -+|+..++++..|.|.||.|+.+|+.++.+||++.+.+-
T Consensus       183 q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~  224 (527)
T KOG0505|consen  183 QWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV  224 (527)
T ss_pred             HHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc
Confidence               123467788888999999999999999999999986654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=5.6e-09  Score=120.71  Aligned_cols=120  Identities=19%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      -||.-|+-.|-.++|+.++..+-+       .+.  .+. .|+|+||-|+-.||.+||+|||++|+            +|
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~D-------pSq--pNd-EGITaLHNAiCaghyeIVkFLi~~ga------------nV  609 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTD-------PSQ--PND-EGITALHNAICAGHYEIVKFLIEFGA------------NV  609 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcC-------CCC--CCc-cchhHHhhhhhcchhHHHHHHHhcCC------------cc
Confidence            455557778999999988876432       111  122 59999999999999999999999999            58


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH--HcCCHHHHHHHHH
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL--MKNNHAYNKLVAR  995 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa--~~G~~eiVeLLl~  995 (1102)
                      |+.|-+||||||.||.-++ .-|+..|.++++.|     .-.+=.|+.||.+-.-  ..|+....++|..
T Consensus       610 Na~DSdGWTPLHCAASCNn-v~~ckqLVe~Gaav-----fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  610 NAADSDGWTPLHCAASCNN-VPMCKQLVESGAAV-----FASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCccCCCCchhhhhhhcCc-hHHHHHHHhccceE-----EeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999754 56899999984322     3334578999988654  3577777777743

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.84  E-value=1e-08  Score=123.81  Aligned_cols=133  Identities=19%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHh------cc-ccCCCC--ChHHHh----hhcCchHHHHHHHcCCHHHHHHHHHcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVE------GN-LSMDGL--SRESLE----MLWEIQLLNRAVKMKCRRMVDLLIHYSL  913 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~------g~-v~i~~~--s~e~~~----~~~g~TlLH~AV~~gs~~IVeLLL~~GA  913 (1102)
                      .++||+|+.+..++.|++||+.+++      |+ ++-+..  +....+    .--|..||-+||--|+.++|++||++||
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA  264 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA  264 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC
Confidence            4899999999999999999997655      11 111100  000000    1127799999999999999999999999


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          914 TSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       914 d~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                                  |||++|-+|.|-||.-+.. ...++-++++.+    |+.+....++.+|.|||..||.-|..++-+.+
T Consensus       265 ------------d~~aqDS~GNTVLH~lVi~-~~~~My~~~L~~----ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  265 ------------DPNAQDSNGNTVLHMLVIH-FVTEMYDLALEL----GANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             ------------CCCccccCCChHHHHHHHH-HHHHHHHHHHhc----CCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence                        6899999999999999885 567789999998    33344789999999999999999999999777


Q ss_pred             HHh
Q 001315          994 ARK  996 (1102)
Q Consensus       994 l~K  996 (1102)
                      +++
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            666

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.84  E-value=2.8e-09  Score=90.44  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=30.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHH
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLA  941 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiA  941 (1102)
                      .|.||||+||++|+.++|++||++|+            +++++|..|+||||+|
T Consensus        15 ~G~T~LH~A~~~g~~~~v~~Ll~~g~------------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   15 YGNTPLHWAARYGHSEVVRLLLQNGA------------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TS--HHHHHHHHT-HHHHHHHHHCT--------------TT---TTS--HHHH-
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCcC------------CCCCCcCCCCCHHHhC
Confidence            69999999999999999999999998            5899999999999998

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.61  E-value=5.6e-08  Score=119.00  Aligned_cols=136  Identities=21%  Similarity=0.243  Sum_probs=107.8

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      .+|++|+-.||..||..||..-++    ++..     ....+.|+|-+||..|..++|++||.+|++            -
T Consensus       792 ~plImaatagh~tvV~~llk~ha~----veaQ-----sdrtkdt~lSlacsggr~~vvelLl~~gan------------k  850 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLKAHAD----VEAQ-----SDRTKDTMLSLACSGGRTRVVELLLNAGAN------------K  850 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHhhhhh----hhhh-----cccccCceEEEecCCCcchHHHHHHHhhcc------------c
Confidence            789999999999999999996533    3322     223578999999999999999999999984            2


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc-----cC
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR-----RN 1002 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~-----~~ 1002 (1102)
                      ..++-..+|||-+|+. .|+.+||.+|+.++.+|+    -..-.+.|..||.+|.++||.+.+.+|+++++|.     -|
T Consensus       851 ehrnvsDytPlsla~S-ggy~~iI~~llS~GseIn----SrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTN  925 (2131)
T KOG4369|consen  851 EHRNVSDYTPLSLARS-GGYTKIIHALLSSGSEIN----SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETN  925 (2131)
T ss_pred             cccchhhcCchhhhcC-cchHHHHHHHhhcccccc----cccccccCcchhhhhhhccccHHHHHHhcccchhccccccc
Confidence            5677788999999987 689999999999843332    2344677999999999999999999999987664     14


Q ss_pred             Cceeeee
Q 001315         1003 GQVTIPV 1009 (1102)
Q Consensus      1003 ~~v~l~i 1009 (1102)
                      .+..|++
T Consensus       926 rnTaltl  932 (2131)
T KOG4369|consen  926 RNTALTL  932 (2131)
T ss_pred             cccceee
Confidence            4445544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.56  E-value=1.7e-07  Score=108.13  Aligned_cols=86  Identities=23%  Similarity=0.248  Sum_probs=74.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  969 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~-~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNa  969 (1102)
                      --||..|+.|+.+.+=.||..||+            +|.-++ .|.||||.||.. |...-+|+|.=+      |||+++
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~------------~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vY------GAD~~a  195 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQ------------ANFFHPEKGNTPLHVAAKA-GQILQAELLAVY------GADPGA  195 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccc------------cCCCCcccCCchhHHHHhc-cchhhhhHHhhc------cCCCCC
Confidence            459999999999999999999993            565554 499999999986 666678999887      678999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001315          970 LDASGHSPYSYALMKNNHAYNKLVAR  995 (1102)
Q Consensus       970 rD~~G~TPLHyAa~~G~~eiVeLLl~  995 (1102)
                      .|.+|.||+.||.+.||.++.+-|++
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            99999999999999999999987754

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.45  E-value=7.2e-08  Score=118.10  Aligned_cols=128  Identities=14%  Similarity=0.035  Sum_probs=109.0

Q ss_pred             hhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          844 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       844 ~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      .++++.|-.||..||-+.|.+|+..+++    ++ +    .+. .|.+||.+|+-.||..+|+.||++.++         
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgan----ie-h----rdk-kgf~plImaatagh~tvV~~llk~ha~---------  815 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGAN----IE-H----RDK-KGFVPLIMAATAGHITVVQDLLKAHAD---------  815 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccc----cc-c----ccc-ccchhhhhhcccCchHHHHHHHhhhhh---------
Confidence            4678999999999999999999997544    22 1    123 599999999999999999999999873         


Q ss_pred             CCCCCC-CCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          924 IFPPNL-AGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       924 lfdpna-kd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                         +++ .|..+.|+|-+|+. .|..+||++||++      +|+...|+-.-+|||.+|+..|+.+||++|+..++..
T Consensus       816 ---veaQsdrtkdt~lSlacs-ggr~~vvelLl~~------gankehrnvsDytPlsla~Sggy~~iI~~llS~GseI  883 (2131)
T KOG4369|consen  816 ---VEAQSDRTKDTMLSLACS-GGRTRVVELLLNA------GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI  883 (2131)
T ss_pred             ---hhhhcccccCceEEEecC-CCcchHHHHHHHh------hccccccchhhcCchhhhcCcchHHHHHHHhhccccc
Confidence               454 58899999999998 5788899999998      5667889999999999999999999999999886443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.36  E-value=8.7e-07  Score=97.50  Aligned_cols=93  Identities=16%  Similarity=0.101  Sum_probs=79.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      ...+|.-|.-+|..+-..-||+-.-            ++|.+|++|+|||..||. .|+.++|++|++.      |||||
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr------------~vn~~D~sGMs~LahAay-kGnl~~v~lll~~------gaDvN   72 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR------------QVNQRDPSGMSVLAHAAY-KGNLTLVELLLEL------GADVN   72 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh------------hhhccCCCcccHHHHHHh-cCcHHHHHHHHHh------CCCcC
Confidence            4567888999999999999997632            478999999999999998 5888999999998      56777


Q ss_pred             CC-CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          969 IL-DASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       969 ar-D~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      .. +..|+||||+||..||.++..+|++-++.-
T Consensus        73 ~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~  105 (396)
T KOG1710|consen   73 DKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM  105 (396)
T ss_pred             cccccccccHHHHHHHcCCchHHHHHHhccCcc
Confidence            65 667999999999999999999999886554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.28  E-value=1.3e-06  Score=102.44  Aligned_cols=94  Identities=20%  Similarity=0.093  Sum_probs=77.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCC
Q 001315          892 LLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD  971 (1102)
Q Consensus       892 lLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD  971 (1102)
                      -|.+|+.......+-+||.||-...        .+-...+.+|.||||+||.+ |+..+.+||+=+      ++|+-++|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e--------~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWy------g~dv~~rd  691 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREE--------VNETCGEGDGRTALHLAARK-GNVVLAQLLIWY------GVDVMARD  691 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchh--------hhccccCCCCcchhhhhhhh-cchhHHHHHHHh------Cccceecc
Confidence            3667898889999999999986310        01123466789999999996 777788999976      67899999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          972 ASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       972 ~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ..|.|+|.||.+.|..+.+.+|+.++..-
T Consensus       692 a~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  692 AHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             cCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999999986553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=4.3e-06  Score=97.97  Aligned_cols=93  Identities=24%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      -|||+++...+.+-.+.++...+.          -.+|.+|+.|.||||+|+.. |+.+-+.+|+.+      +|++..+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~----------~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a------~Adv~~k   84 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS----------LVIDRRDPPGRTPLHLAVRL-GHVEAARILLSA------GADVSIK   84 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh----------ceeccccCCCCccHHHHHHh-cCHHHHHHHHhc------CCCcccc
Confidence            459999987666544444333231          14788999999999999997 666788888887      6788999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |+.|+||||-|+..|+..+|..|+++....
T Consensus        85 N~~gWs~L~EAv~~g~~q~i~~vlr~~~~q  114 (560)
T KOG0522|consen   85 NNEGWSPLHEAVSTGNEQIITEVLRHLKYQ  114 (560)
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHhHHH
Confidence            999999999999999999998887775443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.14  E-value=2.3e-06  Score=99.96  Aligned_cols=93  Identities=19%  Similarity=0.256  Sum_probs=81.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      -.++||+|++.|+.+||++||+||+..          -.|+.|..|.|+||-||+. +...|..+|.+.      ||...
T Consensus       899 ~~sllh~a~~tg~~eivkyildh~p~e----------lld~~de~get~lhkaa~~-~~r~vc~~lvda------gasl~  961 (1004)
T KOG0782|consen  899 HCSLLHYAAKTGNGEIVKYILDHGPSE----------LLDMADETGETALHKAACQ-RNRAVCQLLVDA------GASLR  961 (1004)
T ss_pred             hhhHHHHHHhcCChHHHHHHHhcCCHH----------HHHHHhhhhhHHHHHHHHh-cchHHHHHHHhc------chhhe
Confidence            569999999999999999999999831          2478899999999999996 667799999886      45678


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          969 ILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      .+|..|.||-..|-+.|..++..+|..+-+
T Consensus       962 ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  962 KTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             ecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            899999999999999999999999876533

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=1.2e-05  Score=100.20  Aligned_cols=128  Identities=15%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||++++.++.-++.+|++- .  +....     ..+. ++..-+|+ |..++.+.+-+|+.+.-           -.
T Consensus       575 ~lllhL~a~~lyawLie~~~e~-~--~~~~~-----eld~-d~qgV~hf-ca~lg~ewA~ll~~~~~-----------~a  633 (975)
T KOG0520|consen  575 MLLLHLLAELLYAWLIEKVIEW-A--GSGDL-----ELDR-DGQGVIHF-CAALGYEWAFLPISADG-----------VA  633 (975)
T ss_pred             hHHHHHHHHHhHHHHHHHHhcc-c--ccCch-----hhcc-cCCChhhH-hhhcCCceeEEEEeecc-----------cc
Confidence            4556666666655555555552 0  00000     1111 34455555 33333444444443321           14


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      +|.+|..||||||||+.. |++.++..|+.-+..-|+-.|.+..+-.|.|+-..|..+||..+.-+|-++
T Consensus       634 i~i~D~~G~tpL~wAa~~-G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFR-GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccccCCCCcccchHhhc-CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            688999999999999985 899999999876444455556666667799999999999999999999887

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.03  E-value=4.6e-06  Score=96.45  Aligned_cols=93  Identities=16%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      +...+++|++.|.....+.+.-.|.            |.+.+|-+.+|+||+||. .|+.+++++|++.     ++.+++
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~------------D~~~~DyD~RTaLHvAAa-EG~v~v~kfl~~~-----~kv~~~  567 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGM------------DLETKDYDDRTALHVAAA-EGHVEVVKFLLNA-----CKVDPD  567 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcc------------cccccccccchhheeecc-cCceeHHHHHHHH-----HcCCCC
Confidence            4578889999999999999888887            468889999999999998 5899999999996     255799


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          969 ILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      .+|.-|+|||+=|...+|.+++++|.+....
T Consensus       568 ~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  568 PKDRWGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hhhccCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            9999999999999999999999999887553

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.94  E-value=8.4e-06  Score=62.20  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=26.5

Q ss_pred             CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC
Q 001315          933 GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA  972 (1102)
Q Consensus       933 ~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~  972 (1102)
                      +|.||||+||.. +..+++++|+++      +|+++++|+
T Consensus         1 dG~TpLh~A~~~-~~~~~v~~Ll~~------ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQR-GHPDIVKLLLKH------GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHT-TCHHHHHHHHHT------TSCTTCBCT
T ss_pred             CcccHHHHHHHH-HHHHHHHHHHHC------cCCCCCCCC
Confidence            488999999884 778899999887      567888874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.94  E-value=1.1e-05  Score=61.60  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=25.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLT  914 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd  914 (1102)
                      .|+||||+|+.+|+.++|++||++|++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            389999999999999999999999993

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=97.92  E-value=1.1e-05  Score=61.31  Aligned_cols=27  Identities=15%  Similarity=-0.002  Sum_probs=25.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLT  914 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd  914 (1102)
                      .|+||||+||+.|+.+||++||++|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            389999999999999999999999984

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=1.1e-05  Score=100.06  Aligned_cols=87  Identities=26%  Similarity=0.261  Sum_probs=76.6

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.|+||.||.++..-++|+||.+|+            ++|++|..|.||||.+.. .|+...+-+|++.      +|+.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga------------~vn~~d~~g~~plh~~~~-~g~~~~~~~ll~~------~a~~  715 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGA------------DVNALDSKGRTPLHHATA-SGHTSIACLLLKR------GADP  715 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCC------------cchhhhccCCCcchhhhh-hcccchhhhhccc------cccc
Confidence            58899999999999999999999999            579999999999999998 5777888889887      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      ++.|.+|.+||+||....|.+++-||
T Consensus       716 ~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cccCccCcchhhHHhhhccccHHHHH
Confidence            99999999999999888666655433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.83  E-value=4.3e-05  Score=93.79  Aligned_cols=124  Identities=18%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             HHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC
Q 001315          852 FSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG  931 (1102)
Q Consensus       852 FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd  931 (1102)
                      -|+++|...+|++.|+.-....++++     -++-+ |+++||.|+.+-|.+++++|+++..              ..  
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lnin-----c~d~l-Gr~al~iai~nenle~~eLLl~~~~--------------~~--   88 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNIN-----CRDPL-GRLALHIAIDNENLELQELLLDTSS--------------EE--   88 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchh-----ccChH-hhhceecccccccHHHHHHHhcCcc--------------cc--
Confidence            58999999999999986332223333     33443 9999999999999999999999964              22  


Q ss_pred             CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC----CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 001315          932 PGGITPLHLAACTSDSDDIIDALTNDPQEIGP----SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRR 1001 (1102)
Q Consensus       932 ~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGa----gA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~ 1001 (1102)
                         .-+|-+|+.. +...+||+|++++...+.    +....+.=.-+-|||.+||..+|+|++++|++|.+..+
T Consensus        89 ---gdALL~aI~~-~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   89 ---GDALLLAIAV-GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ---chHHHHHHHH-HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence               2578888874 788899999998543210    11112233447899999999999999999999977653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.81  E-value=1.4e-05  Score=96.89  Aligned_cols=77  Identities=21%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~-~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~  966 (1102)
                      .|+|+||+|+..|..++++-||.+|+            +++.+|. .|+||||-|..+ |+.+.+-+|+.+      |+.
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlqhGi------------dv~vqD~ESG~taLHRaiyy-G~idca~lLL~~------g~S  111 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQHGI------------DVFVQDEESGYTALHRAIYY-GNIDCASLLLSK------GRS  111 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHhcCc------------eeeeccccccchHhhHhhhh-chHHHHHHHHhc------CCc
Confidence            59999999999999999999999998            4677884 799999999986 888999999998      345


Q ss_pred             CcCCCCCCCCHHHHHHH
Q 001315          967 NSILDASGHSPYSYALM  983 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~  983 (1102)
                      ...+|++|..||++-++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            78999999999998876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.68  E-value=6.5e-05  Score=88.79  Aligned_cols=89  Identities=20%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             HHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCC
Q 001315          850 LVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNL  929 (1102)
Q Consensus       850 L~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpna  929 (1102)
                      |.-|+.......+-+||..+....+  +    +....-+|+|+||+|++.||+.+..|||-||+            |+-+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~--~----~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~------------dv~~  689 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV--N----ETCGEGDGRTALHLAARKGNVVLAQLLIWYGV------------DVMA  689 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh--h----ccccCCCCcchhhhhhhhcchhHHHHHHHhCc------------ccee
Confidence            4445555556666677776543222  1    12233358999999999999999999999998            4678


Q ss_pred             CCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 001315          930 AGPGGITPLHLAACTSDSDDIIDALTND  957 (1102)
Q Consensus       930 kd~~G~TPLHiAA~~~g~eeVVeLLL~~  957 (1102)
                      +|..|.|+|.||-. .+..++++.|+.+
T Consensus       690 rda~g~t~l~yar~-a~sqec~d~llq~  716 (749)
T KOG0705|consen  690 RDAHGRTALFYARQ-AGSQECIDVLLQY  716 (749)
T ss_pred             cccCCchhhhhHhh-cccHHHHHHHHHc
Confidence            99999999999977 5888999999987

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.64  E-value=8.5e-05  Score=87.45  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             hHHHHHHhcC-cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          848 FLLVFSVDRG-CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       848 tLL~FAadrG-wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .|||+++... |-...+.|+.. ....+  +..     +. .|.||||+||.-|+...+++||.+||            +
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~-~~~~i--d~~-----D~-~g~TpLhlAV~Lg~~~~a~~Ll~a~A------------d   80 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK-VSLVI--DRR-----DP-PGRTPLHLAVRLGHVEAARILLSAGA------------D   80 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh-hhcee--ccc-----cC-CCCccHHHHHHhcCHHHHHHHHhcCC------------C
Confidence            5688877654 66677766665 33333  322     22 57999999999999999999999999            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTN  956 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~  956 (1102)
                      +-.++..||||||-|++..+...|.++|..
T Consensus        81 v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   81 VSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            567899999999999997544444454443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.59  E-value=0.00014  Score=84.97  Aligned_cols=89  Identities=21%  Similarity=0.223  Sum_probs=73.0

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      +..-||-++.-|..++.--||..+++-++-    .|   +  .|.||||.|++.|+..-||+|+-|||            
T Consensus       133 LsrQLhasvRt~nlet~LRll~lGA~~N~~----hp---e--kg~TpLHvAAk~Gq~~Q~ElL~vYGA------------  191 (669)
T KOG0818|consen  133 LSKQLHSSVRTGNLETCLRLLSLGAQANFF----HP---E--KGNTPLHVAAKAGQILQAELLAVYGA------------  191 (669)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHcccccCCC----Cc---c--cCCchhHHHHhccchhhhhHHhhccC------------
Confidence            456789999999999999999987653322    22   2  48999999999999999999999999            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhC
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTN  956 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~  956 (1102)
                      ||++.|.+|+||+-||-. .|+.++.+-|.+
T Consensus       192 D~~a~d~~GmtP~~~AR~-~gH~~laeRl~e  221 (669)
T KOG0818|consen  192 DPGAQDSSGMTPVDYARQ-GGHHELAERLVE  221 (669)
T ss_pred             CCCCCCCCCCcHHHHHHh-cCchHHHHHHHH
Confidence            689999999999999976 577777666643

>PF13606 Ank_3: Ankyrin repeat

Probab=97.58  E-value=6.3e-05  Score=57.16  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          973 SGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       973 ~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      +|+||||+|+..|+.++|++|+++.++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            477888888888888888888777654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.50  E-value=3.5e-05  Score=93.71  Aligned_cols=66  Identities=20%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCC-CCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDAS-GHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~-G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      .|.+|.-|+|+||+|+.. +...+++-|+++      |+|++.+|.. |+||||.|...||.+.+-+|++|+..
T Consensus        45 anikD~~GR~alH~~~S~-~k~~~l~wLlqh------Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSE-NKNSFLRWLLQH------GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             hhHHHhhccceeeeeecc-chhHHHHHHHhc------CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            588999999999999996 667899999999      5689999976 99999999999999999999999543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.31  E-value=0.00038  Score=73.70  Aligned_cols=69  Identities=19%  Similarity=0.154  Sum_probs=61.7

Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|++|..|||||+.||+. |..+++.+|+.+    |+ |||-++|..|.+++.+|-..|+.+++++|.+...+.
T Consensus         4 ~in~rD~fgWTalmcaa~e-g~~eavsyllgr----g~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAME-GSNEAVSYLLGR----GV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CccchhhhcchHHHHHhhh-cchhHHHHHhcc----Cc-ccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            6899999999999999994 778899999987    32 799999999999999999999999999999885443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.08  E-value=0.00033  Score=87.77  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~-GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~  966 (1102)
                      .|+|+||+|+..++..+++-++++ |-          +  .+.-|.+|+--+|+.|. .+. +..-+|+...     +-.
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~----------~--~~eld~d~qgV~hfca~-lg~-ewA~ll~~~~-----~~a  633 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGS----------G--DLELDRDGQGVIHFCAA-LGY-EWAFLPISAD-----GVA  633 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhccccc----------C--chhhcccCCChhhHhhh-cCC-ceeEEEEeec-----ccc
Confidence            589999999999999999999998 32          1  23445566666677655 244 4555555431     234


Q ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          967 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++.+|..|+||||+|+++|+..++.-|+.-.++.
T Consensus       634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             cccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            8999999999999999999999999998765543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0011  Score=77.60  Aligned_cols=87  Identities=14%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIFP  926 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~-GAd~~~gsa~~ylfd  926 (1102)
                      ..++||+..|....++.++-.+.    +++..     +. +.+|+||.|+..|++++|++||+. +.            +
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~----D~~~~-----Dy-D~RTaLHvAAaEG~v~v~kfl~~~~kv------------~  565 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGM----DLETK-----DY-DDRTALHVAAAEGHVEVVKFLLNACKV------------D  565 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcc----ccccc-----cc-ccchhheeecccCceeHHHHHHHHHcC------------C
Confidence            45789999998887777665443    33322     33 688999999999999999999974 33            6


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTND  957 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~  957 (1102)
                      ||.+|.=|+|||--|-.. ++.+|+.+|-+.
T Consensus       566 ~~~kDRw~rtPlDdA~~F-~h~~v~k~L~~~  595 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHF-KHKEVVKLLEEA  595 (622)
T ss_pred             CChhhccCCCcchHhHhc-CcHHHHHHHHHH
Confidence            899999999999999987 677899998764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.55  E-value=0.0026  Score=75.37  Aligned_cols=68  Identities=26%  Similarity=0.368  Sum_probs=58.6

Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      =.+|++-.|-|||||.. |+.+||++|+++    |..--.++.|.+|.|+||-|+..++..+.+||++-++.-
T Consensus       893 l~~~~~~~sllh~a~~t-g~~eivkyildh----~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl  960 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKT-GNGEIVKYILDH----GPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL  960 (1004)
T ss_pred             EeeCcchhhHHHHHHhc-CChHHHHHHHhc----CCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh
Confidence            46789999999999996 777899999998    333346889999999999999999999999999887664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.49  E-value=0.0023  Score=80.10  Aligned_cols=87  Identities=24%  Similarity=0.241  Sum_probs=71.6

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .-+++||.|+..||..++.+||+.+.+    ++.     .+. .|.||||.+...|+...+.+|++.||           
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~----vn~-----~d~-~g~~plh~~~~~g~~~~~~~ll~~~a-----------  713 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD----VNA-----LDS-KGRTPLHHATASGHTSIACLLLKRGA-----------  713 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc----chh-----hhc-cCCCcchhhhhhcccchhhhhccccc-----------
Confidence            446899999999999999999997543    332     233 59999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHH
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDAL  954 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLL  954 (1102)
                       ++++.+++|.+||++|... .+.+++-+|
T Consensus       714 -~~~a~~~~~~~~l~~a~~~-~~~d~~~l~  741 (785)
T KOG0521|consen  714 -DPNAFDPDGKLPLDIAMEA-ANADIVLLL  741 (785)
T ss_pred             -cccccCccCcchhhHHhhh-ccccHHHHH
Confidence             5899999999999999776 444454444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.60  E-value=0.037  Score=63.86  Aligned_cols=76  Identities=20%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcC
Q 001315          890 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  969 (1102)
Q Consensus       890 ~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNa  969 (1102)
                      ..-|..||+.|..+.|+.|++.|.            ++|++|.-...||.+|.. -||++||++|+++    |+=|+   
T Consensus        37 f~elceacR~GD~d~v~~LVetgv------------nVN~vD~fD~spL~lAsL-cGHe~vvklLLen----GAiC~---   96 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGV------------NVNAVDRFDSSPLYLASL-CGHEDVVKLLLEN----GAICS---   96 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCC------------CcchhhcccccHHHHHHH-cCcHHHHHHHHHc----CCccc---
Confidence            345889999999999999999998            589999999999999987 4999999999998    43232   


Q ss_pred             CCC-CCCCHHHHHHHcCC
Q 001315          970 LDA-SGHSPYSYALMKNN  986 (1102)
Q Consensus       970 rD~-~G~TPLHyAa~~G~  986 (1102)
                      +|. +|. ==||++.+.+
T Consensus        97 rdtf~G~-RC~YgaLnd~  113 (516)
T KOG0511|consen   97 RDTFDGD-RCHYGALNDR  113 (516)
T ss_pred             ccccCcc-hhhhhhhhHH
Confidence            333 343 3478887553

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.06  E-value=0.035  Score=65.81  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH
Q 001315          901 CRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       901 s~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy  980 (1102)
                      -...|++|.+++++      .+|.+.|.+.+----|+|||||.. |....|..||..      +||..++|..|.||+.+
T Consensus       403 ~p~~ie~lken~ls------gnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Lee------g~Dp~~kd~~Grtpy~l  469 (591)
T KOG2505|consen  403 EPDSIEALKENLLS------GNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEE------GCDPSTKDGAGRTPYSL  469 (591)
T ss_pred             chhHHHHHHhcCCc------ccccccccccccccchHHHHHHhc-chHHHHHHHHHh------cCCchhcccCCCCcccc
Confidence            36788999999874      356677888888888999999986 556677777776      47899999999999999


Q ss_pred             HHHcCCHHHHHHHHHh
Q 001315          981 ALMKNNHAYNKLVARK  996 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~K  996 (1102)
                      ++   |.++=...+..
T Consensus       470 s~---nkdVk~~F~a~  482 (591)
T KOG2505|consen  470 SA---NKDVKSIFIAR  482 (591)
T ss_pred             cc---cHHHHHHHHHH
Confidence            87   55665555543

>smart00248 ANK ankyrin repeats

Probab=94.62  E-value=0.046  Score=36.80  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCC
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLT  914 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd  914 (1102)
                      +.|+||+|+..++.+++++||+++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            67999999999999999999999873

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.57  E-value=0.025  Score=67.07  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=59.1

Q ss_pred             chhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHH
Q 001315          859 CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPL  938 (1102)
Q Consensus       859 caVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPL  938 (1102)
                      ...+..|...+..+++++.   |++.+.+ --|+||+|+..|..++|..||+.|+            ||-++|..|+||.
T Consensus       404 p~~ie~lken~lsgnf~~~---pe~~~~l-tsT~LH~aa~qg~~k~v~~~Leeg~------------Dp~~kd~~Grtpy  467 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT---PEANDYL-TSTFLHYAAAQGARKCVKYFLEEGC------------DPSTKDGAGRTPY  467 (591)
T ss_pred             hhHHHHHHhcCCccccccc---ccccccc-cchHHHHHHhcchHHHHHHHHHhcC------------CchhcccCCCCcc
Confidence            5566777777766776654   3444443 5599999999999999999999997            6899999999999


Q ss_pred             HHHHhcCCcHHHHHHHh
Q 001315          939 HLAACTSDSDDIIDALT  955 (1102)
Q Consensus       939 HiAA~~~g~eeVVeLLL  955 (1102)
                      .+++.    .+|-..++
T Consensus       468 ~ls~n----kdVk~~F~  480 (591)
T KOG2505|consen  468 SLSAN----KDVKSIFI  480 (591)
T ss_pred             ccccc----HHHHHHHH
Confidence            99973    34555444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.89  E-value=0.16  Score=58.88  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLT  914 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd  914 (1102)
                      .-|+.||.+|..+.|+.|++.+    ++++.     ++. -...||.+|+-.||.++|++||++||-
T Consensus        38 ~elceacR~GD~d~v~~LVetg----vnVN~-----vD~-fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETG----VNVNA-----VDR-FDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhC----CCcch-----hhc-ccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4577899999999999999954    55553     344 367999999999999999999999993

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=93.86  E-value=0.096  Score=56.16  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTND  957 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~  957 (1102)
                      .|||+|+.|+..|+.+.|.+|+.+|+.           .|.+.|..|++++.+|=. +|+.++|..|-+.
T Consensus        11 fgWTalmcaa~eg~~eavsyllgrg~a-----------~vgv~d~ssldaaqlaek-~g~~~fvh~lfe~   68 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLGRGVA-----------FVGVTDESSLDAAQLAEK-GGAQAFVHSLFEN   68 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhccCcc-----------cccccccccchHHHHHHh-cChHHHHHHHHHH
Confidence            599999999999999999999999952           478999999999999965 6899999999765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.81  E-value=0.076  Score=66.37  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=78.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      --...|+++|+...|+..+++...        ..+++|..|+-|+++||+|..+ -+.+++++|++++        +.. 
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~--------~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~--------~~~-   88 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAV--------SKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTS--------SEE-   88 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccc--------cccchhccChHhhhceeccccc-ccHHHHHHHhcCc--------ccc-
Confidence            345669999999999999988541        2457899999999999999985 5667999999983        122 


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccccCCceeeeeCcc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLADRRNGQVTIPVGVE 1012 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~~~~v~l~i~~~ 1012 (1102)
                          .-+|-+|...|....||+|+..-+.-.+-+.+.+.+.+
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~  126 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSP  126 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcc
Confidence                46899999999999999999887766544445555444

>smart00248 ANK ankyrin repeats

Probab=93.81  E-value=0.08  Score=35.58  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          974 GHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       974 G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                      |.||+|+|+..|+.+++++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            566666666666666666666553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1102
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		2e-22
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		4e-20
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		3e-13

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 46/55 (83%)
Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
           CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 163 GSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222
           GS G++   +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60
Query: 223 LSEFDEGKRSC 233
           L EFDE KRSC
Sbjct: 61  LQEFDEAKRSC 71

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)
Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
           CQV +C+ D+S  K YH+RH+VC   + ++  ++  + +R+CQQC +FH L +FDEGKRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65
Query: 233 C 233
           C
Sbjct: 66  C 66
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1102
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	6e-42
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	6e-39
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	9e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  147 bits (372), Expect = 6e-42
 Identities = 56/93 (60%), Positives = 66/93 (70%)

Query: 163 GSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222
           GS G++   +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 223 LSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSR 255
           L EFDE KRSCRRRLAGHN RRRK+  E   S 
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  138 bits (349), Expect = 6e-39
 Identities = 36/83 (43%), Positives = 55/83 (66%)

Query: 168 APYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
                CQV +C+ D+S  K YH+RH+VC   + ++  ++  + +R+CQQC +FH L +FD
Sbjct: 1   GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFD 60

Query: 228 EGKRSCRRRLAGHNRRRRKTQPE 250
           EGKRSCRR+L  HN RR++   +
Sbjct: 61  EGKRSCRRKLERHNNRRKRKPVD 83

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  119 bits (301), Expect = 9e-33
 Identities = 44/57 (77%), Positives = 46/57 (80%)

Query: 171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
             CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 4   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 1e-09
 Identities = 75/541 (13%), Positives = 148/541 (27%), Gaps = 184/541 (34%)

Query: 562  SDAQDCTGRIIF-------KLFD-KDPSQFP-GTLRKEIYNWLSNSPSEMESYIRPGCVI 612
             + Q     I+          FD KD    P   L KE  + +  S   +   +R    +
Sbjct: 12   GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----L 67

Query: 613  LSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCK 672
                +S      ++    +L+               N +FL+   K          R+  
Sbjct: 68   FWTLLSKQEEMVQKFVEEVLRI--------------NYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 673  SWR--TWSSPELISVSPLAVVGGQELSFKLRGRNLTNL----GTKIHCTFMGGYASQEVT 726
              R   ++  ++ +     V   Q    KLR + L  L       I    + G     V 
Sbjct: 114  EQRDRLYNDNQVFA--KYNVSRLQPYL-KLR-QALLELRPAKNVLIDG--VLGSGKTWVA 167

Query: 727  SSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLE 786
               C             K+Q         F++ ++N     +  V+     +      ++
Sbjct: 168  LDVCL----SY------KVQCKMDF--KIFWLNLKNCNSPET--VLEMLQKLL---YQID 210

Query: 787  SEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRF 846
              + + +           H          +   L  L  L  +   +             
Sbjct: 211  PNWTSRSD----------HSSNIKLRIHSIQAELRRL--LKSKPYENC------------ 246

Query: 847  KFLLV------------FSVDRGCCALV----KAILDIL---VEGNLSMD----GLS-RE 882
              LLV            F  +  C  L+    K + D L      ++S+D     L+  E
Sbjct: 247  --LLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 883  SLEML--W----------EIQLLN-RAVKM---KCRRMVDLLIHY--------------S 912
               +L  +          E+   N R + +     R  +    ++              S
Sbjct: 303  VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 913  LT--SSNDTPQKY----IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW 966
            L      +  + +    +FPP+      I  + L+    D         +D   +     
Sbjct: 363  LNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVI------KSDVMVV----- 407

Query: 967  NSILDASGHSPYSYALMKNNHAYNKLVARKLADRRN--GQVTIP-VGVEIEQSGLAKEQV 1023
                                   NKL    L +++     ++IP + +E++     +  +
Sbjct: 408  ----------------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 1024 H 1024
            H
Sbjct: 446  H 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 3e-08
 Identities = 54/384 (14%), Positives = 105/384 (27%), Gaps = 117/384 (30%)

Query: 779  CKE-LSLLESEFGAEAKVCDVISEHQAHEYGRP-RSREEVLHFLNE---------LGWLF 827
             K+ LS+ E  F       DV       +  +   S+EE+ H +           L W  
Sbjct: 18   YKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 828  QRKRASSI---VKGS---DYS--LSRFKFLLVFSVDRGCCALVKAI---LDILVEGNLSM 876
              K+   +   V+     +Y   +S  K     +  R    + +      D L   N   
Sbjct: 72   LSKQEEMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 877  DGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH-------YSLTSS--NDTPQKYIFPP 927
               +   L+   ++    R   ++ R   ++LI          +          +     
Sbjct: 127  AKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD- 181

Query: 928  NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN-- 985
                   I  L+L  C S  + +++ L     +I P+ W S  D S +       ++   
Sbjct: 182  -----FKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAEL 234

Query: 986  -----NHAYNK-----------------------LVA---RKLADRRNGQVTIPVGVEIE 1014
                 +  Y                         L+    +++ D  +   T  + ++  
Sbjct: 235  RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 1015 QSGLAKEQVHGLSSQFKQRGKSCTKCAVAAAKLNKRVRGSQGLLNRPYIHSMLAIAAVCV 1074
               L  ++V  L  ++                 N            P   S+  IA    
Sbjct: 295  SMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTN------------PRRLSI--IAE--- 335

Query: 1075 CVCLFLRGSPDIGLVAPFKWENLD 1098
                 +R            W+N  
Sbjct: 336  ----SIRDGLA-------TWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1102
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.87
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.83
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.82
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.82
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.82
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.82
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.82
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.81
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.81
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.81
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.81
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.81
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.81
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.81
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.8
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.8
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.8
2etb_A	256	Transient receptor potential cation channel subfam	99.8
2rfa_A	232	Transient receptor potential cation channel subfa	99.8
2etb_A	256	Transient receptor potential cation channel subfam	99.8
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.8
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.8
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2rfa_A	232	Transient receptor potential cation channel subfa	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
2pnn_A	273	Transient receptor potential cation channel subfa	99.79
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.79
2pnn_A	273	Transient receptor potential cation channel subfa	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.78
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.78
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.78
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.78
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.78
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.78
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.78
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.78
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.77
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.77
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.77
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.77
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.76
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.76
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.76
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.76
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.76
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.76
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.75
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.75
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.75
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.75
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.75
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.74
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.74
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.74
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.74
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.74
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.74
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.73
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.73
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.73
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.73
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.73
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.73
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.73
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.72
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.71
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.71
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.7
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.7
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.7
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.69
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.69
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.68
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.67
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.67
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.66
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.65
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.63
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.62
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.6
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.58
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.56
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.54
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.53
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.5
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.47
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.44
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.36

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.5e-39  Score=296.82  Aligned_cols=90  Identities=60%  Similarity=1.047  Sum_probs=80.5

Q ss_pred             CCCCCCCCCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCccCccchHHHHHhhHHhh
Q 001315          164 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR  243 (1102)
Q Consensus       164 ~~~~~~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~R  243 (1102)
                      ++|+++.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+|
T Consensus         2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R   81 (94)
T 1ul4_A            2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER   81 (94)
T ss_dssp             ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred             CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence            34457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCcccc
Q 001315          244 RRKTQPEDIT  253 (1102)
Q Consensus       244 Rrk~~~~~~~  253 (1102)
                      |||++++..+
T Consensus        82 RRk~~~~~~~   91 (94)
T 1ul4_A           82 RRKSSGESGP   91 (94)
T ss_dssp             CCSCCCC---
T ss_pred             hccCCCCcCC
Confidence            9999999765

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.3e-37  Score=280.90  Aligned_cols=83  Identities=43%  Similarity=0.919  Sum_probs=78.3

Q ss_pred             CCCCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCccCccchHHHHHhhHHhhhccCC
Q 001315          169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQ  248 (1102)
Q Consensus       169 ~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~RRrk~~  248 (1102)
                      ..++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||||+.
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             Ccc
Q 001315          249 PED  251 (1102)
Q Consensus       249 ~~~  251 (1102)
                      ++.
T Consensus        82 ~~~   84 (88)
T 1ul5_A           82 VDK   84 (88)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            553

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.94  E-value=1.2e-28  Score=211.35  Aligned_cols=59  Identities=75%  Similarity=1.229  Sum_probs=57.2

Q ss_pred             CCCCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCcc
Q 001315          169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD  227 (1102)
Q Consensus       169 ~~~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd  227 (1102)
                      +.++||||||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            56899999999999999999999999999999999999999999999999999999998

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.87  E-value=4.1e-22  Score=198.28  Aligned_cols=125  Identities=21%  Similarity=0.226  Sum_probs=108.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++|++|+..++..+++.||+.+    .+++..     +. .|+||||+|+++|+.++|++||++|+            +
T Consensus        38 ~t~l~~a~~~~~~~~~~~ll~~g----ad~~~~-----d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga------------d   95 (169)
T 4gpm_A           38 RTPLHHAAENGHKEVVKLLISKG----ADVNAK-----DS-DGRTPLHHAAENGHKEVVKLLISKGA------------D   95 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcc----cchhhh-----cc-CCCCHHHHHHHcCCHHHHHHHHHCcC------------C
Confidence            48999999999999999999854    344433     22 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|+||||+||.. |+.++|++|++.      +|+++.+|.+|.||||+|+.+|+.+++++|++++++-
T Consensus        96 vn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           96 VNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            899999999999999985 788999999997      5789999999999999999999999999999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.86  E-value=2.1e-21  Score=193.20  Aligned_cols=136  Identities=21%  Similarity=0.248  Sum_probs=117.2

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      +...|+.|+.+|+.++|+.||+.+    ++++..     +. .|+||||+|+..++.+++++||++|+            
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~~G----advn~~-----d~-~g~t~l~~a~~~~~~~~~~~ll~~ga------------   61 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIENG----ADVNAS-----DS-DGRTPLHHAAENGHKEVVKLLISKGA------------   61 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHhccc------------
Confidence            456789999999999999999964    444533     22 59999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      +++.+|..|+||||+||.. |+.++|++|++.      +|++|++|.+|+||||+|+..|+.++|++|+++.++-    .
T Consensus        62 d~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           62 DVNAKDSDGRTPLHHAAEN-GHKEVVKLLISK------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             chhhhccCCCCHHHHHHHc-CCHHHHHHHHHC------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            5789999999999999985 788999999998      5789999999999999999999999999999997664    2


Q ss_pred             CCceeeeeC
Q 001315         1002 NGQVTIPVG 1010 (1102)
Q Consensus      1002 ~~~v~l~i~ 1010 (1102)
                      +|..+|.+.
T Consensus       135 ~G~TpL~~A  143 (169)
T 4gpm_A          135 DGRTPLDLA  143 (169)
T ss_dssp             TSCCHHHHH
T ss_pred             CCCCHHHHH
Confidence            455555553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.85  E-value=9e-21  Score=178.02  Aligned_cols=123  Identities=17%  Similarity=0.206  Sum_probs=109.2

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .-.++||+|+..|+.++++.|++.+    .+++..     + ..|.||||+|+..|+.++|++||++|+           
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----------   71 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANG----ADVNAK-----D-EYGLTPLYLATAHGHLEIVEVLLKNGA-----------   71 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----C-TTSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcC----CCCCCc-----C-CCCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            3469999999999999999999964    344433     2 258999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                       ++|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|.+|.||||+|+..|+.+++++|+++
T Consensus        72 -~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           72 -DVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKH------GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             -CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             -CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence             5789999999999999996 778899999997      567999999999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=2.8e-21  Score=181.50  Aligned_cols=124  Identities=19%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.++||+|+.+|+.++++.||+..    .+++..     + ..|+||||+|+. |+.++|++||++|+            
T Consensus        12 g~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~------------   68 (136)
T 1d9s_A           12 SDAGLATAAARGQVETVRQLLEAG----ADPNAL-----N-RFGRRPIQVMMM-GSAQVAELLLLHGA------------   68 (136)
T ss_dssp             CSCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----C-TTCCTTTTTSTT-SCHHHHHHHHHHTC------------
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcC----CCcCCc-----C-CCCCCHHHHHHc-CCHHHHHHHHHCCC------------
Confidence            458999999999999999999963    344433     2 258999999999 99999999999998            


Q ss_pred             CCCCCCCC-CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          926 PPNLAGPG-GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       926 dpnakd~~-G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++|.+|.. |.||||+|+.. ++.+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++++++
T Consensus        69 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 EPNCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CSSCCBTTTTBCHHHHHHHH-TCHHHHHHHHHT------CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            57899999 99999999995 788999999997      578999999999999999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.9e-20  Score=168.19  Aligned_cols=124  Identities=22%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.+++++|+++|+            +
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~   60 (126)
T 1n0r_A            3 RTPLHLAARNGHLEVVKLLLEAG----ADVNAK-----DK-NGRTPLHLAARNGHLEVVKLLLEAGA------------D   60 (126)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             ccHHHHHHHcCcHHHHHHHHHcC----CCCCCc-----CC-CCCcHHHHHHHcCcHHHHHHHHHcCC------------C
Confidence            37999999999999999999964    333322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.+|..|.||||+|+.. +..+++++|++.      +++++.+|..|.||||+|+..|+.+++++|++++++
T Consensus        61 ~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           61 VNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CcccCCCCCcHHHHHHHc-ChHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            788999999999999985 788999999997      567899999999999999999999999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.83  E-value=2.5e-20  Score=177.48  Aligned_cols=125  Identities=16%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      +.++|+.|+..|..++++.|++.+.+    .+       ....|.||||+|+..|+.++|++|+++|+            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~----~~-------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   58 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP----FT-------TDWLGTSPLHLAAQYGHFSTTEVLLRAGV------------   58 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC----CC-------CCTTCCCHHHHHHHHTCHHHHHHHHTTTC------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC----CC-------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            45789999999999999999996432    22       12248899999999999999999999987            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|.++..|.||||+|+.. ++.+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus        59 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  126 (153)
T 1awc_B           59 SRDARTKVDRTPLHMAASE-GHANIVEVLLKH------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV  126 (153)
T ss_dssp             CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHc-ChHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            5788899999999999985 678899999987      5678999999999999999999999999999886653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.82  E-value=4.4e-20  Score=178.23  Aligned_cols=125  Identities=18%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.||+.++    +++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   94 (172)
T 3v30_A           37 FTPLIWASAFGEIETVRFLLEWGA----DPHIL-----AK-ERESALSLASTGGYTDIVGLLLERDV------------D   94 (172)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTC----CTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHTTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC----Cchhh-----cc-cCCCHHHHHHHCCCHHHHHHHHHcCC------------C
Confidence            489999999999999999999743    33322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|++.      +++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus        95 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           95 INIYDWNGGTPLLYAVRG-NHVKCVEALLAR------GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            789999999999999985 788999999997      5789999999999999999999999999999998776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.82  E-value=5.1e-20  Score=181.19  Aligned_cols=125  Identities=15%  Similarity=0.076  Sum_probs=105.8

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|+.++++.|++...+    ++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   93 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDK----LEDK-----DI-EGSTALIWAVKNNRLGIAEKLLSKGS------------N   93 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCC----TTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccc----cccc-----cc-cCccHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            4899999999999999999997533    2322     22 58899999999999999999999988            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++.+|..|.||||+|+.. ++.+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus        94 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  160 (192)
T 2rfm_A           94 VNTKDFSGKTPLMWSIIF-GYSEMSYFLLEH------GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI  160 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            788899999999999985 677899999987      5678999999999999999999999999999886653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.82  E-value=6.6e-20  Score=175.85  Aligned_cols=136  Identities=19%  Similarity=0.229  Sum_probs=115.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|+.|+..|..++++.|++.   +..+....     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   67 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTV---QSVNCRDI-----EG-RQSTPLHFAAGYNRVSVVEYLLQHGA------------D   67 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCT-----TT-TCCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             hHHHHHHHHhCCHHHHHHHHHc---CCCCcccc-----cc-CCCCHHHHHHHcChHHHHHHHHhcCC------------C
Confidence            5899999999999999999984   22332322     22 48899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++.++.    .+
T Consensus        68 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  140 (165)
T 3twr_A           68 VHAKDKGGLVPLHNACSY-GHYEVAELLVKH------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD  140 (165)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCccCCCCCCHHHHHHHc-CcHHHHHHHHhC------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            789999999999999985 788899999997      5679999999999999999999999999999986654    25


Q ss_pred             CceeeeeC
Q 001315         1003 GQVTIPVG 1010 (1102)
Q Consensus      1003 ~~v~l~i~ 1010 (1102)
                      |+.++++.
T Consensus       141 g~t~l~~a  148 (165)
T 3twr_A          141 GNTPLDLV  148 (165)
T ss_dssp             SCCTGGGS
T ss_pred             CCChhHhH
Confidence            66666663

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.82  E-value=6.4e-20  Score=179.00  Aligned_cols=138  Identities=20%  Similarity=0.197  Sum_probs=116.1

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      +.++|+.|+..|+.++++.||+.   +..+++..      ...|+||||+|+..|+.++|++||++|+            
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   63 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDN---TENDLNQG------DDHGFSPLHWACREGRSAVVEMLIMRGA------------   63 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHC---TTSCTTCC------CTTSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhc---Cccccccc------CCCCCCHHHHHHHcCcHHHHHHHHHcCC------------
Confidence            34789999999999999999985   22333322      2258999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      ++|.+|..|.||||+|+.. ++.+++++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++.++.    .
T Consensus        64 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  136 (179)
T 3f6q_A           64 RINVMNRGDDTPLHLAASH-GHRDIVQKLLQY------KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK  136 (179)
T ss_dssp             CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCT
T ss_pred             CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhcc
Confidence            5788999999999999985 788999999998      5689999999999999999999999999999987664    2


Q ss_pred             CCceeeeeCc
Q 001315         1002 NGQVTIPVGV 1011 (1102)
Q Consensus      1002 ~~~v~l~i~~ 1011 (1102)
                      .|..+|++..
T Consensus       137 ~g~tpl~~A~  146 (179)
T 3f6q_A          137 YGEMPVDKAK  146 (179)
T ss_dssp             TSCCGGGGSC
T ss_pred             CCCCcHHHHH
Confidence            5666666654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.82  E-value=4.5e-20  Score=175.67  Aligned_cols=123  Identities=15%  Similarity=0.140  Sum_probs=102.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+. |+.++++.|++.+    .+++..     +. .|.||||+|++.|+.++|++||++|+            +
T Consensus        39 ~t~L~~A~~-~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   95 (162)
T 1ihb_A           39 RTALQVMKL-GNPEIARRLLLRG----ANPDLK-----DR-TGFAVIHDAARAGFLDTLQTLLEFQA------------D   95 (162)
T ss_dssp             CCHHHHCCS-SCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             ccHHHHHHc-CcHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            489999998 9999999999853    333322     22 58899999999999999999999987            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSW-NSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~-vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|++.      +++ ++.+|..|.||||+|+.+|+.+++++|++++++
T Consensus        96 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           96 VNIEDNEGNLPLHLAAKE-GHLRVVEFLVKH------TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHH------SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            788899999999999984 778899999987      334 689999999999999999999999999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.82  E-value=6e-20  Score=194.14  Aligned_cols=136  Identities=15%  Similarity=0.122  Sum_probs=119.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      ++|||+|+.+|+.++|++||+..+    +++..      ...|.||||+|+..++.+++++||++|+            +
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a----~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~g~------------~  144 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGA----NAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNA------------K  144 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTC----CTTCC------CTTCCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCC----CcCcc------CCCCCCccccccccChHHHHHHHHHCCC------------C
Confidence            489999999999999999998643    33322      2258999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.+|..|+||||+||.. |+.++|++|++.      +|++|++|..|.||||+|+.+|+.++|++|++++++-    .+
T Consensus       145 ~n~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  217 (269)
T 4b93_B          145 PNKKDLSGNTPLIYACSG-GHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR  217 (269)
T ss_dssp             SCCCCTTCCCHHHHHHHT-TCGGGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCCCCCCCCHHHHHHHC-CCHHHHHHHHHC------CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            899999999999999985 788899999997      5789999999999999999999999999999997765    36


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      |..+|.+..
T Consensus       218 G~TpL~~A~  226 (269)
T 4b93_B          218 QRTAVDCAE  226 (269)
T ss_dssp             SCCSGGGSC
T ss_pred             CCCHHHHHH
Confidence            888888864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.81  E-value=8.7e-20  Score=186.80  Aligned_cols=110  Identities=24%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCC-CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPG-GITPLHLAACTSDSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~-G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~  966 (1102)
                      .|.||||+|+..|+.++|++||++|+            ++|.++.. |.||||+|+.. ++.++|++|+++      +|+
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------gad  217 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGA------------DLNKPEPTCGRTPLHLAVEA-QAASVLELLLKA------GAD  217 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTC------------CTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCC------------CCCCCCCCCCcCHHHHHHHc-CCHHHHHHHHHc------CCC
Confidence            48899999999999999999999988            46777754 99999999984 778899999987      568


Q ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcccccc
Q 001315          967 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVEIEQS 1016 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~~~~~ 1016 (1102)
                      +|++|..|.||||+|+.+|+.+++++|++++++.    .+|..++.+..+-.+.
T Consensus       218 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~  271 (282)
T 1oy3_D          218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS  271 (282)
T ss_dssp             TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcccc
Confidence            9999999999999999999999999999997776    3688888877664443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.81  E-value=1.4e-20  Score=180.57  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=108.4

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.++||+|+..|+.++++.||+.+    .+++..     +. .|+||||+|+ .|+.++|++||++|+            
T Consensus        12 ~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~------------   68 (156)
T 1bi7_B           12 SADWLATAAARGRVEEVRALLEAG----ANPNAP-----NS-YGRRPIQVMM-MGSARVAELLLLHGA------------   68 (156)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT----CCTTCC-----CS-SSCCTTTSSC-TTCHHHHHHHHTTTC------------
T ss_pred             chHHHHHHHHcCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHH-cCCHHHHHHHHHcCC------------
Confidence            358999999999999999999853    344433     22 5999999995 999999999999998            


Q ss_pred             CCCCCCCCCCh-HHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          926 PPNLAGPGGIT-PLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       926 dpnakd~~G~T-PLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|.+|..|.| |||+|+.. ++.++|++|+++      ++++|.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus        69 ~~~~~d~~g~ttpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           69 EPNCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT  137 (156)
T ss_dssp             CCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred             CCCCcCCCCCcHHHHHHHHC-CCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence            57899999999 99999996 788999999997      5789999999999999999999999999999987765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.81  E-value=1.3e-19  Score=175.59  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=110.4

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ..++|+.|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++||++|+            
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   71 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANG----ADVNAE-----DA-SGWTPLHLAAFNGHLEIVEVLLKNGA------------   71 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            358999999999999999999964    344433     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|.+|..|.||||+|+.. ++.+++++|+++      ++++|.+|.+|.||||+|+..|+.+++++|+++.++-
T Consensus        72 ~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           72 DVNAVDHAGMTPLRLAALF-GHLEIVEVLLKN------GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5788999999999999985 788899999997      5679999999999999999999999999999986653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.81  E-value=7.9e-20  Score=176.47  Aligned_cols=134  Identities=18%  Similarity=0.132  Sum_probs=112.9

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||+|+..|..++++.||+...   ..++..      ...|+||||+|+..|+.++|++||++|+            ++
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~---~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~   62 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGD---NLVNKP------DERGFTPLIWASAFGEIETVRFLLEWGA------------DP   62 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCS---GGGGCC------CTTSCCHHHHHHHTTCHHHHHHHHHHTC------------CT
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCc---ccccCC------CCCCCCHHHHHHHcCCHHHHHHHHHcCC------------Cc
Confidence            68999999999999999998532   112222      2258999999999999999999999998            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCC
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNG 1003 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~ 1003 (1102)
                      |.++..|.||||+|+.. ++.+++++|++.      ++++|.+|..|.||||+|+..|+.+++++|+++.++-    ..|
T Consensus        63 ~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  135 (172)
T 3v30_A           63 HILAKERESALSLASTG-GYTDIVGLLLER------DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG  135 (172)
T ss_dssp             TCCCTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhhcccCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            89999999999999985 788999999997      5679999999999999999999999999999986654    234


Q ss_pred             ceeeee
Q 001315         1004 QVTIPV 1009 (1102)
Q Consensus      1004 ~v~l~i 1009 (1102)
                      ..+|.+
T Consensus       136 ~t~l~~  141 (172)
T 3v30_A          136 YTPMDL  141 (172)
T ss_dssp             CCHHHH
T ss_pred             CCHHHH
Confidence            444444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.81  E-value=1.3e-19  Score=174.21  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=109.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   94 (167)
T 3v31_A           37 FTPLMWAAAHGQIAVVEFLLQNG----ADPQLL-----GK-GRESALSLACSKGYTDIVKMLLDCGV------------D   94 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHHTC------------C
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcC----CCCCCc-----CC-CCCcHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            48999999999999999999963    333322     22 58899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|.+|.||||+|+..|+.+++++|++++.+.
T Consensus        95 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           95 VNEYDWNGGTPLLYAVHG-NHVKCVKMLLES------GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            788999999999999985 788899999987      5679999999999999999999999999999987765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.81  E-value=1e-19  Score=173.22  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++|+++|+            +
T Consensus        35 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   92 (153)
T 1awc_B           35 TSPLHLAAQYGHFSTTEVLLRAG----VSRDAR-----TK-VDRTPLHMAASEGHANIVEVLLKHGA------------D   92 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHTTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcChHHHHHHHHHcCC------------C
Confidence            48999999999999999999853    333432     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|
T Consensus        93 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           93 VNAKDMLKMTALHWATEH-NHQEVVELLIKY------GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            789999999999999985 788999999998      568999999999999999999999999987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=7.2e-20  Score=174.27  Aligned_cols=125  Identities=16%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      ++.++|++|+.+|..++++.||+..    ++++..      ...|.||||+|+. |+.++|++||++|+           
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~----~~~~~~------~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-----------   61 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN----VNVNAQ------NGFGRTALQVMKL-GNPEIARRLLLRGA-----------   61 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC----CCTTCC------CTTSCCHHHHCCS-SCHHHHHHHHHTTC-----------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC----CCcccc------CccCccHHHHHHc-CcHHHHHHHHHcCC-----------
Confidence            4679999999999999999999843    444433      2258999999999 99999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                       ++|.+|..|.||||+|+.. ++.+++++|+++      ++++|.+|.+|.||||+|+..|+.+++++|+++.++
T Consensus        62 -~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           62 -NPDLKDRTGFAVIHDAARA-GFLDTLQTLLEF------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             -CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence             5789999999999999985 778899999997      568999999999999999999999999999998765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.81  E-value=8.4e-20  Score=175.47  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=114.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|..++++.|++..    .+++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   61 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQE----NVINHT-----DE-EGFTPLMWAAAHGQIAVVEFLLQNGA------------D   61 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHS----SCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             cchHHHHHHCCCHHHHHHHHHcC----CCcCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC------------C
Confidence            37899999999999999999964    233322     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      ++.++..|.||||+|+.. ++.+++++|++.      ++++|.+|.+|.||||+|+..|+.+++++|+++.++.    ..
T Consensus        62 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  134 (167)
T 3v31_A           62 PQLLGKGRESALSLACSK-GYTDIVKMLLDC------GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS  134 (167)
T ss_dssp             TTCCCTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcCCCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            788999999999999996 778899999987      5679999999999999999999999999999986654    23


Q ss_pred             Cceeeee
Q 001315         1003 GQVTIPV 1009 (1102)
Q Consensus      1003 ~~v~l~i 1009 (1102)
                      |+.++++
T Consensus       135 g~t~l~~  141 (167)
T 3v31_A          135 GYNSMDL  141 (167)
T ss_dssp             SCCHHHH
T ss_pred             CCCHHHH
Confidence            5555444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.81  E-value=1.4e-19  Score=178.04  Aligned_cols=123  Identities=15%  Similarity=0.100  Sum_probs=109.2

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.++||+|+.+|+.++++.|++.++    +++..     +. .|.||||+|+..|+.++|++||++|+            
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------  125 (192)
T 2rfm_A           68 GSTALIWAVKNNRLGIAEKLLSKGS----NVNTK-----DF-SGKTPLMWSIIFGYSEMSYFLLEHGA------------  125 (192)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTC----CTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCC----CCCCC-----CC-CCCcHHHHHHHcCCHHHHHHHHHCCC------------
Confidence            3589999999999999999999743    33322     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                      ++|.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+..|+.+++++|++..
T Consensus       126 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          126 NVNDRNLEGETPLIVASKY-GRSEIVKKLLEL------GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            5789999999999999986 778899999997      5689999999999999999999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.81  E-value=1.2e-19  Score=172.15  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ..++|++|+..|..++++.||+. .  ..+.+..     +. .|.||||+ +..|+.++|++||++|+            
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~--~~~~~~~-----~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~------------   59 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-E--LVHPDAL-----NR-FGKTALQV-MMFGSTAIALELLKQGA------------   59 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-T--CCCTTCC-----CT-TSCCHHHH-SCTTCHHHHHHHHHTTC------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-h--CcCcccc-----CC-CCCcHHHH-HHcCCHHHHHHHHHCCC------------
Confidence            35778888888888888888775 1  1222322     12 47788888 77788888888888776            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      ++|.+|..|.||||+|+.. |+.+++++|+++      ++++|.+|.+|.||||+|+..|+.+++++|+++
T Consensus        60 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAART-GFLDTLKVLVEH------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            4677777788888888774 667788888776      456777888888888888888888888887776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.2e-19  Score=160.33  Aligned_cols=92  Identities=24%  Similarity=0.225  Sum_probs=85.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      |+||||+|++.|+.++|++||++|+            ++|.+|..|.||||+|+.. ++.+++++|++.      ++++|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~   62 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGA------------DVNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADVN   62 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCC------------CCcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCC
Confidence            7899999999999999999999998            5789999999999999985 788999999997      57899


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          969 ILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      .+|.+|.||||+|+..|+.+++++|++++++
T Consensus        63 ~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999998763

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.80  E-value=6.6e-20  Score=187.77  Aligned_cols=133  Identities=17%  Similarity=0.152  Sum_probs=109.5

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChH--------HHhhhcCchHHHHHHHcCCHHHHHHHHH---cCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRE--------SLEMLWEIQLLNRAVKMKCRRMVDLLIH---YSLT  914 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e--------~~~~~~g~TlLH~AV~~gs~~IVeLLL~---~GAd  914 (1102)
                      -.++||+|+.+|+.++|++||+.+    .+++.....        ......|+||||+|+..|+.++|++||+   +|+ 
T Consensus        93 g~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-  167 (260)
T 3jxi_A           93 GQTALHIAIERRCKHYVELLVEKG----ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA-  167 (260)
T ss_dssp             SBCHHHHHHHTTCHHHHHHHHHTT----CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCC----CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC-
Confidence            358999999999999999999964    333322100        0000258999999999999999999999   777 


Q ss_pred             CCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc--------HHHHHHHhCCCCCCCCCCCC-------cCCCCCCCCHHH
Q 001315          915 SSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS--------DDIIDALTNDPQEIGPSSWN-------SILDASGHSPYS  979 (1102)
Q Consensus       915 ~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~--------eeVVeLLL~~p~~iGagA~v-------NarD~~G~TPLH  979 (1102)
                                 ++|.+|..|+||||+|+.....        .+++++|+++      +|++       +++|.+|.||||
T Consensus       168 -----------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          168 -----------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             -----------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             -----------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHHH
Confidence                       5899999999999999975331        4799999987      4566       789999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhccc
Q 001315          980 YALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       980 yAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|+..|+.+++++|+++..+.
T Consensus       231 ~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          231 MAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhCCCc
Confidence            999999999999999998775

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=2.3e-19  Score=173.91  Aligned_cols=121  Identities=18%  Similarity=0.232  Sum_probs=107.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++|+++|+            +
T Consensus        48 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  105 (169)
T 2y1l_E           48 WTPLHLAAFNGHLEIVEVLLKNG----ADVNAV-----DH-AGMTPLRLAALFGHLEIVEVLLKNGA------------D  105 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999953    333433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|+++
T Consensus       106 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          106 VNANDMEGHTPLHLAAMF-GHLEIVEVLLKN------GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            788999999999999985 788999999998      567999999999999999999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.80  E-value=7.9e-20  Score=175.31  Aligned_cols=122  Identities=18%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.|++..    .+++..     +. .|+||||+|+..|+.++|++||++|+            +
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~  100 (165)
T 3twr_A           43 STPLHFAAGYNRVSVVEYLLQHG----ADVHAK-----DK-GGLVPLHNACSYGHYEVAELLVKHGA------------V  100 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcChHHHHHHHHhcC----CCCCcc-----CC-CCCCHHHHHHHcCcHHHHHHHHhCCC------------C
Confidence            48999999999999999999964    344433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|.+|.||||+|+. |+.+++++|+++.+
T Consensus       101 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          101 VNVADLWKFTPLHEAAAK-GKYEICKLLLQH------GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            789999999999999985 788999999997      57899999999999999877 99999999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.80  E-value=2.1e-19  Score=170.43  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.++||+ +..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++|+++|+            
T Consensus        36 g~t~L~~-~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------   92 (156)
T 1bd8_A           36 GKTALQV-MMFGSTAIALELLKQG----ASPNVQ-----DT-SGTSPVHDAARTGFLDTLKVLVEHGA------------   92 (156)
T ss_dssp             SCCHHHH-SCTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CCcHHHH-HHcCCHHHHHHHHHCC----CCCCCc-----CC-CCCCHHHHHHHcCcHHHHHHHHHcCC------------
Confidence            3589999 9999999999999964    334433     22 59999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                      ++|.+|..|.||||+|+.. ++.+++++|++.       ++++.+|.+|.||||+|+..|+.+++++|++++
T Consensus        93 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-------~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  156 (156)
T 1bd8_A           93 DVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-------SDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             CSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-------SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             CCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-------cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhhC
Confidence            5789999999999999985 788999999985       468999999999999999999999999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.80  E-value=2.3e-19  Score=183.71  Aligned_cols=131  Identities=22%  Similarity=0.258  Sum_probs=108.5

Q ss_pred             hhHHHHHH---hcCcchhHHHHHHHHHhcc-------ccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001315          847 KFLLVFSV---DRGCCALVKAILDILVEGN-------LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS  916 (1102)
Q Consensus       847 ktLL~FAa---drGwcaVVK~LLd~L~~g~-------v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~  916 (1102)
                      +++||+|+   ..|+.++++.||+.+.+..       ..++.      ....|+||||+||..|+.++|++||++|++  
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--  118 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD------VYYRGQTALHIAIERRCKHYVELLVEKGAD--  118 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC------SSEESBCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc------cccCCCCHHHHHHHcCCHHHHHHHHhCCCC--
Confidence            49999999   7799999999999875521       11111      112589999999999999999999999984  


Q ss_pred             CCCCCCcCCCCCCCC--------------CCCChHHHHHHhcCCcHHHHHHHhCCCCCCC-CCCCCcCCCCCCCCHHHHH
Q 001315          917 NDTPQKYIFPPNLAG--------------PGGITPLHLAACTSDSDDIIDALTNDPQEIG-PSSWNSILDASGHSPYSYA  981 (1102)
Q Consensus       917 ~gsa~~ylfdpnakd--------------~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iG-agA~vNarD~~G~TPLHyA  981 (1102)
                                +|.++              ..|.||||+||.. |+.++|++|++.    | .++++|.+|.+|.||||+|
T Consensus       119 ----------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~----~~~ga~~~~~d~~g~TpLh~A  183 (260)
T 3jxi_A          119 ----------VHAQARGRFFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTEN----GHKQADLRRQDSRGNTVLHAL  183 (260)
T ss_dssp             ----------TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT-TCHHHHHHHHHC----SSCCCCTTCCCTTSCCHHHHH
T ss_pred             ----------cCccccccccCcccccccccCCCCHHHHHHHc-CCHHHHHHHHhc----cccCCCCcccCCCCCcHHHHH
Confidence                      45555              6899999999985 788999999993    2 2678999999999999999


Q ss_pred             HHcCC---------HHHHHHHHHhhccc
Q 001315          982 LMKNN---------HAYNKLVARKLADR 1000 (1102)
Q Consensus       982 a~~G~---------~eiVeLLl~Kia~~ 1000 (1102)
                      ++.|+         .+++++|+++.++.
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          184 VAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            99888         79999999997653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.80  E-value=3.2e-19  Score=182.74  Aligned_cols=136  Identities=23%  Similarity=0.259  Sum_probs=108.9

Q ss_pred             hhHHHHHHhc---CcchhHHHHHHHHHhccc-c--CCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 001315          847 KFLLVFSVDR---GCCALVKAILDILVEGNL-S--MDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP  920 (1102)
Q Consensus       847 ktLL~FAadr---GwcaVVK~LLd~L~~g~v-~--i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa  920 (1102)
                      +++||+|+.+   |+.+++++||+.+++.+. .  ++.... . ....|.||||+|+..|+.++|++||++|++      
T Consensus        44 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~-~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------  115 (256)
T 2etb_A           44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT-D-EFYQGHSALHIAIEKRSLQCVKLLVENGAD------  115 (256)
T ss_dssp             BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC-S-TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc-c-ccccCCCHHHHHHHcCCHHHHHHHHHcCCC------
Confidence            4899999999   999999999998766320 0  000000 0 012599999999999999999999999984      


Q ss_pred             CCcCCCCCCCCCC-------------CChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHH--cC
Q 001315          921 QKYIFPPNLAGPG-------------GITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM--KN  985 (1102)
Q Consensus       921 ~~ylfdpnakd~~-------------G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~--~G  985 (1102)
                            +|.++..             |.||||+|+.. |+.++|++|++.+.   .++++|.+|.+|.||||+|+.  .|
T Consensus       116 ------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~---~ga~~n~~d~~g~TpLh~A~~~~~~  185 (256)
T 2etb_A          116 ------VHLRACGRFFQKHQGTCFYFGELPLSLAACT-KQWDVVTYLLENPH---QPASLEATDSLGNTVLHALVMIADN  185 (256)
T ss_dssp             ------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT-TCHHHHHHHHHCSS---CCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred             ------CCcccccccccccccccccCCCCHHHHHHHc-CCHHHHHHHHhccc---cCCCcCccCCCCCCHHHHHHHcccC
Confidence                  5555554             99999999985 78899999999310   167899999999999999999  88


Q ss_pred             CHH-------HHHHHHHhhccc
Q 001315          986 NHA-------YNKLVARKLADR 1000 (1102)
Q Consensus       986 ~~e-------iVeLLl~Kia~~ 1000 (1102)
                      +.+       ++++|+++.++.
T Consensus       186 ~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          186 SPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHcCCCc
Confidence            988       999999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.80  E-value=5.5e-19  Score=177.57  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=109.0

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCCh--------HHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSR--------ESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN  917 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~--------e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~  917 (1102)
                      -.++||+|+.+|+.+++++||+.+++    ++....        ...+ ..|.||||+|+..|+.++|++||++|+    
T Consensus        75 g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga----  145 (232)
T 2rfa_A           75 GQTALHIAVINQNVNLVRALLARGAS----VSARATGSVFHYRPHNLI-YYGEHPLSFAACVGSEEIVRLLIEHGA----  145 (232)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCCSGGGSCCTTCSC-CCCSSHHHHHHHHTCHHHHHHHHHTTC----
T ss_pred             CcCHHHHHHHcCCHHHHHHHHhCCCC----CCcccCCcceeecccccc-cCCCCHHHHHHHcCCHHHHHHHHHCCC----
Confidence            35899999999999999999996433    232210        0001 148999999999999999999999998    


Q ss_pred             CCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHH----HHHhCCCCCCCCCCCC------cCCCCCCCCHHHHHHHcCCH
Q 001315          918 DTPQKYIFPPNLAGPGGITPLHLAACTSDSDDII----DALTNDPQEIGPSSWN------SILDASGHSPYSYALMKNNH  987 (1102)
Q Consensus       918 gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVV----eLLL~~p~~iGagA~v------NarD~~G~TPLHyAa~~G~~  987 (1102)
                              ++|.+|..|.||||+|+.. +..+++    ++|++.      +++.      +.+|..|.||||+|+.+|+.
T Consensus       146 --------~~~~~d~~g~t~L~~A~~~-~~~~~~~~i~~~Ll~~------g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~  210 (232)
T 2rfa_A          146 --------DIRAQDSLGNTVLHILILQ-PNKTFACQMYNLLLSY------DGGDHLKSLELVPNNQGLTPFKLAGVEGNI  210 (232)
T ss_dssp             --------CTTCCCTTSCCHHHHHHTC-SCHHHHHHHHHHHHHT------TCSCSSCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             --------CCCCCCCCCCCHHHHHHHc-CChHHHHHHHHHHHhc------CCchhhhhhhccCCCCCCCHHHHHHHcCCH
Confidence                    5799999999999999985 677777    999988      3344      69999999999999999999


Q ss_pred             HHHHHHHHhhccc
Q 001315          988 AYNKLVARKLADR 1000 (1102)
Q Consensus       988 eiVeLLl~Kia~~ 1000 (1102)
                      +++++|+++....
T Consensus       211 ~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          211 VMFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCccc
Confidence            9999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.80  E-value=1.1e-19  Score=186.26  Aligned_cols=133  Identities=14%  Similarity=0.089  Sum_probs=110.3

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHH-------HhhhcCchHHHHHHHcCCHHHHHHHHH---cCCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRES-------LEMLWEIQLLNRAVKMKCRRMVDLLIH---YSLTS  915 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~-------~~~~~g~TlLH~AV~~gs~~IVeLLL~---~GAd~  915 (1102)
                      -.++||+|+.+|+.+++++||+.++    +++......       .....|.||||+|+..|+.++|++||+   +|+  
T Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga--  163 (256)
T 2etb_A           90 GHSALHIAIEKRSLQCVKLLVENGA----DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA--  163 (256)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC----CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC--
Confidence            3599999999999999999999643    333221000       000028999999999999999999999   887  


Q ss_pred             CCCCCCCcCCCCCCCCCCCChHHHHHHhc-CCcHH-------HHHHHhCCCCCCCCCCCC-------cCCCCCCCCHHHH
Q 001315          916 SNDTPQKYIFPPNLAGPGGITPLHLAACT-SDSDD-------IIDALTNDPQEIGPSSWN-------SILDASGHSPYSY  980 (1102)
Q Consensus       916 ~~gsa~~ylfdpnakd~~G~TPLHiAA~~-~g~ee-------VVeLLL~~p~~iGagA~v-------NarD~~G~TPLHy  980 (1102)
                                ++|.+|..|+||||+|+.. .+..+       ++++|+++      +|++       |.+|..|.||||+
T Consensus       164 ----------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~  227 (256)
T 2etb_A          164 ----------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM------GARLCPTVQLEEISNHQGLTPLKL  227 (256)
T ss_dssp             ----------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHSTTCCGGGCCCTTSCCHHHH
T ss_pred             ----------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc------CCCcccccccccccCCCCCCHHHH
Confidence                      5899999999999999973 36666       99999997      5677       9999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhccc
Q 001315          981 ALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |+.+|+.+++++|+++..+.
T Consensus       228 A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          228 AAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhCCCCC
Confidence            99999999999999997765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.80  E-value=4.3e-19  Score=177.07  Aligned_cols=139  Identities=21%  Similarity=0.190  Sum_probs=116.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+..  .+++..      ...|.||||+|+..|+.++|++|+++|+            +
T Consensus        73 ~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  132 (228)
T 2dzn_A           73 WTPFHIACSVGNLEVVKSLYDRPLK--PDLNKI------TNQGVTCLHLAVGKKWFEVSQFLIENGA------------S  132 (228)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHSSSSC--CCTTCC------CTTCCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC--cccccC------CcCCCCHHHHHHHcCCHhHHHHHHHcCC------------C
Confidence            4899999999999999999985311  333322      2258999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-Hhhccc----c
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVA-RKLADR----R 1001 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl-~Kia~~----~ 1001 (1102)
                      ++.+|..|.||||+|+.. +..+++++|++.    | .+++|.+|..|.||||+|+..|+.+++++|+ ++.++.    .
T Consensus       133 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~----g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          133 VRIKDKFNQIPLHRAASV-GSLKLIELLCGL----G-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHT-TCHHHHHHHHTT----T-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             ccccCCCCCCHHHHHHHc-CCHHHHHHHHhc----C-cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            789999999999999985 788999999997    2 2689999999999999999999999999999 666654    3


Q ss_pred             CCceeeeeCc
Q 001315         1002 NGQVTIPVGV 1011 (1102)
Q Consensus      1002 ~~~v~l~i~~ 1011 (1102)
                      +|..++++..
T Consensus       207 ~g~t~l~~A~  216 (228)
T 2dzn_A          207 KGAKAEDVAL  216 (228)
T ss_dssp             TSCBGGGGCS
T ss_pred             CCCcHHHHHH
Confidence            5777777753

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=187.90  Aligned_cols=133  Identities=21%  Similarity=0.160  Sum_probs=104.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHH-hcc-ccCCCCChHHHh---------------------------hhcCchHHHHHH
Q 001315          847 KFLLVFSVDRGCCALVKAILDILV-EGN-LSMDGLSRESLE---------------------------MLWEIQLLNRAV  897 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~-~g~-v~i~~~s~e~~~---------------------------~~~g~TlLH~AV  897 (1102)
                      .++||+|+.+|+.++++.||+.+. +-+ .+....++....                           ...|+||||+|+
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~  191 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV  191 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            489999999999999999999753 100 011111111110                           113789999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhC-CCCCCCCCCCCcCCCCCCCC
Q 001315          898 KMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTN-DPQEIGPSSWNSILDASGHS  976 (1102)
Q Consensus       898 ~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~-~p~~iGagA~vNarD~~G~T  976 (1102)
                      ..|+.++|++||++|+            ++|.+|..|+||||+|+.. |+.++|++|++ .      ++++|.+|.+|.|
T Consensus       192 ~~g~~~~v~~Ll~~ga------------d~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~------gad~~~~d~~g~T  252 (276)
T 4hbd_A          192 SHGRVDVVKALLACEA------------DVNVQDDDGSTALMCACEH-GHKEIAGLLLAVP------SCDISLTDRDGST  252 (276)
T ss_dssp             HTTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHTST------TCCTTCCCTTSCC
T ss_pred             HcCCHHHHHHHHhCCC------------CCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhcC------CCCCcCcCCCCCC
Confidence            9999999999999988            5788999999999999985 67889999998 4      5678999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhhc
Q 001315          977 PYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       977 PLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      |||+|+.+|+.+++++|+++.+
T Consensus       253 pL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          253 ALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccC
Confidence            9999999999999999998764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.79  E-value=4e-19  Score=178.29  Aligned_cols=141  Identities=18%  Similarity=0.195  Sum_probs=117.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+....++++..      ...|.||||+|+..|+.++|++||++|+            +
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  141 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR------NYDGLTALHVAVNTECQETVQLLLERGA------------D  141 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC------CTTSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccccc------CcCCCcHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            489999999999999999999865433343432      2258999999999999999999999998            4


Q ss_pred             CCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          927 PNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       927 pnakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      ++.++ ..|.||||+|+.. +..+++++|++.      ++++|.+|..|.||||+|+..|+.+++++|+++.++.    .
T Consensus       142 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          142 IDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  214 (241)
T ss_dssp             TTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCC
Confidence            67777 7899999999985 788899999997      5789999999999999999999999999999997764    2


Q ss_pred             CCceeeeeCcc
Q 001315         1002 NGQVTIPVGVE 1012 (1102)
Q Consensus      1002 ~~~v~l~i~~~ 1012 (1102)
                      +|+.++++...
T Consensus       215 ~g~tpl~~A~~  225 (241)
T 1k1a_A          215 HNDTPLMVARS  225 (241)
T ss_dssp             TSCCTTTTCSS
T ss_pred             CCCCHHHHHHh
Confidence            46666666543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=3.7e-19  Score=189.47  Aligned_cols=143  Identities=19%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             hhhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCC
Q 001315          844 SRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTP  920 (1102)
Q Consensus       844 ~RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~---gs~~IVeLLL~~GAd~~~gsa  920 (1102)
                      ...-..|+.|+..|....++.|+..+.+    +............|.||||+|+..   |+.++|++||++|+       
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~----~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-------  196 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADGVD----LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-------  196 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCC----TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-------
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhhcc----hhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC-------
Confidence            3444788999999999999999886433    221100000122589999999999   99999999999998       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          921 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       921 ~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                           ++|.+|..|.||||+||.. |+.++|++|+++      ||++|++|.+|.||||+|+..|+.+++++|+++.+++
T Consensus       197 -----~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          197 -----NLDKQTGKGSTALHYCCLT-DNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             -----CccccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                 5799999999999999985 788999999997      6789999999999999999999999999999999988


Q ss_pred             cCCceeeee
Q 001315         1001 RNGQVTIPV 1009 (1102)
Q Consensus      1001 ~~~~v~l~i 1009 (1102)
                      .+.|+.+.+
T Consensus       265 ~~~~~~v~~  273 (278)
T 1dcq_A          265 FNSHVHVEY  273 (278)
T ss_dssp             CCSSCCCCC
T ss_pred             CCcceeeec
Confidence            777766654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.79  E-value=4.9e-19  Score=177.95  Aligned_cols=141  Identities=16%  Similarity=0.173  Sum_probs=112.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP-QKYIF  925 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa-~~ylf  925 (1102)
                      .++||+|+..|+.++++.|++...+-.  ....  . .....|.||||+|+..|+.++|++||++|++...... ..+.+
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~--~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  112 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELV--FEPM--T-SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY  112 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGG--GCCC--C-STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhc--cccc--c-ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceee
Confidence            489999999999999999999754411  0000  0 0122589999999999999999999999996422111 12233


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHH----HHHHHhhcc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN----KLVARKLAD  999 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiV----eLLl~Kia~  999 (1102)
                      .++..|..|.||||+|+.. ++.+++++|+++      ++++|++|.+|.||||+|+..|+.+++    ++|+++.++
T Consensus       113 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~  183 (232)
T 2rfa_A          113 RPHNLIYYGEHPLSFAACV-GSEEIVRLLIEH------GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG  183 (232)
T ss_dssp             CTTCSCCCCSSHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred             cccccccCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence            5566777999999999996 788999999997      578999999999999999999999988    888888764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=1.7e-19  Score=166.23  Aligned_cols=115  Identities=15%  Similarity=0.110  Sum_probs=96.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.|++..    .+++..     +. .|+||||+|+..|+.++|++||++|+            +
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   65 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKG----EDVNRT-----LE-GGRKPLHYAADCGQLEILEFLLLKGA------------D   65 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTT----CCTTSC-----CT-TSSCHHHHHHHTTCHHHHHHHHTTTC------------C
T ss_pred             chHHHHHHHcCCHHHHHHHHHcC----CCcCcc-----CC-CCCcHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            58999999999999999999853    333433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      +|.+|..|+||||+|+.. ++.+++++|+++      +++++.+|.+|.||||+|+   +.++.++|
T Consensus        66 ~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~---~~~~~~ll  122 (123)
T 3aaa_C           66 INAPDKHHITPLLSAVYE-GHVSCVKLLLSK------GADKTVKGPDGLTAFEATD---NQAIKALL  122 (123)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence            789999999999999985 778899999997      5679999999999999994   44455444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.79  E-value=5.1e-19  Score=183.25  Aligned_cols=134  Identities=19%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             hhHHHHHHhc---CcchhHHHHHHHHHhcc-----ccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 001315          847 KFLLVFSVDR---GCCALVKAILDILVEGN-----LSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND  918 (1102)
Q Consensus       847 ktLL~FAadr---GwcaVVK~LLd~L~~g~-----v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~g  918 (1102)
                      +++||+|+..   |+.+++++||+.+++..     ++.....    ....|.||||+|+..|+.++|++||++|++    
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~----~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~----  126 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD----SYYKGQTALHIAIERRNMTLVTLLVENGAD----  126 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS----TTTTTCCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc----ccCCCCCHHHHHHHcCCHHHHHHHHHCCCC----
Confidence            5999999986   99999999999876421     1111000    112599999999999999999999999984    


Q ss_pred             CCCCcCCCCCCCCC--------------CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHc
Q 001315          919 TPQKYIFPPNLAGP--------------GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMK  984 (1102)
Q Consensus       919 sa~~ylfdpnakd~--------------~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~  984 (1102)
                              +|.++.              .|.||||+|+.. ++.++|++|++.+.   .++++|.+|.+|.||||+|+..
T Consensus       127 --------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~---~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          127 --------VQAAANGDFFKKTKGRPGFYFGELPLSLAACT-NQLAIVKFLLQNSW---QPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             --------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT-TCHHHHHHHHHCSS---CCCCTTCCCTTSCCHHHHHHHH
T ss_pred             --------cCccccccccccccccccccCCCCHHHHHHHc-CCHHHHHHHHhccc---CCCCceeeCCCCCcHHHHHHHc
Confidence                    444444              899999999985 78899999999310   2678999999999999999999


Q ss_pred             CC---------HHHHHHHHHhhccc
Q 001315          985 NN---------HAYNKLVARKLADR 1000 (1102)
Q Consensus       985 G~---------~eiVeLLl~Kia~~ 1000 (1102)
                      |+         .+++++|+++.++.
T Consensus       195 ~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          195 ADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHHHHHHHHHHHHHhhhhc
Confidence            99         89999999987663

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.79  E-value=6.6e-19  Score=183.09  Aligned_cols=149  Identities=17%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc---
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY---  923 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y---  923 (1102)
                      .++||+|+..|+.+++++||+.+    .+++..     +. .|+||||+|+..|+.++|++||++|++.......+.   
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~-----~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  143 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENG----ANINQP-----DN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL  143 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC----CCCCCC-----CC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            49999999999999999999954    344433     22 599999999999999999999999986421111000   


Q ss_pred             -------------------C--------------------------CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCC
Q 001315          924 -------------------I--------------------------FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDP  958 (1102)
Q Consensus       924 -------------------l--------------------------fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p  958 (1102)
                                         .                          ......+..|.||||+||.. |+.++|++|++. 
T Consensus       144 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~-  221 (299)
T 1s70_B          144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQA-  221 (299)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTT-
T ss_pred             HHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC-CcHHHHHHHHHc-
Confidence                               0                          01223567899999999996 788899999987 


Q ss_pred             CCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          959 QEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       959 ~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                           ++++|.+|.+|.||||+|+..|+.+++++|++++++.    ..|+.++++...
T Consensus       222 -----g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          222 -----RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             -----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             -----CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence                 5789999999999999999999999999999997765    368888888754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.79  E-value=2.1e-19  Score=186.08  Aligned_cols=133  Identities=13%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChH--------HHhhhcCchHHHHHHHcCCHHHHHHHHH---cCCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRE--------SLEMLWEIQLLNRAVKMKCRRMVDLLIH---YSLT  914 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e--------~~~~~~g~TlLH~AV~~gs~~IVeLLL~---~GAd  914 (1102)
                      -.++||+|+.+|+.++|++||+.++    +++.....        ......|.||||+|+..|+.++|++||+   +|+ 
T Consensus       101 g~tpL~~A~~~g~~~~v~~Ll~~ga----~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-  175 (273)
T 2pnn_A          101 GQTALHIAIERRNMTLVTLLVENGA----DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA-  175 (273)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCC----CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC-
Confidence            3599999999999999999999643    33322100        0000148999999999999999999999   887 


Q ss_pred             CCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCc--------HHHHHHHhCCCCCCCCCCCCc-------CCCCCCCCHHH
Q 001315          915 SSNDTPQKYIFPPNLAGPGGITPLHLAACTSDS--------DDIIDALTNDPQEIGPSSWNS-------ILDASGHSPYS  979 (1102)
Q Consensus       915 ~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~--------eeVVeLLL~~p~~iGagA~vN-------arD~~G~TPLH  979 (1102)
                                 ++|.+|..|+||||+|+..+..        .+++++|++.      +|++|       .+|.+|.||||
T Consensus       176 -----------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          176 -----------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL------GAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             -----------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             -----------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh------hhhcccccccccccCCCCCCHHH
Confidence                       5899999999999999986331        6899999987      45675       59999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhccc
Q 001315          980 YALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       980 yAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|+.+|+.+++++|+++.++.
T Consensus       239 ~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          239 LAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHTC-
T ss_pred             HHHHhChHHHHHHHHHCCCCC
Confidence            999999999999999999854

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=1.4e-19  Score=182.37  Aligned_cols=126  Identities=5%  Similarity=-0.101  Sum_probs=107.0

Q ss_pred             hhHHHHHHhcCcc----hhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC------HHHHHHHHHcCCCCC
Q 001315          847 KFLLVFSVDRGCC----ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC------RRMVDLLIHYSLTSS  916 (1102)
Q Consensus       847 ktLL~FAadrGwc----aVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs------~~IVeLLL~~GAd~~  916 (1102)
                      ++|||+|+.+|+.    +++++||+.+    ++++..     + ..|+||||+|+..++      .+||++||++|+   
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~G----advn~~-----d-~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga---  105 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINKG----ADIKSR-----T-KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA---  105 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHTT----CCSSCC-----C-TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHCC----CCCCCC-----C-CCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC---
Confidence            4999999999975    4899999854    445533     2 269999999999987      689999999999   


Q ss_pred             CCCCCCcCCCCCCCCCCCC-hHHHHHHhcC----CcHHHHHHHhC-CCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Q 001315          917 NDTPQKYIFPPNLAGPGGI-TPLHLAACTS----DSDDIIDALTN-DPQEIGPSSWNSILDASGHSPYSYALMKNNHAYN  990 (1102)
Q Consensus       917 ~gsa~~ylfdpnakd~~G~-TPLHiAA~~~----g~eeVVeLLL~-~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiV  990 (1102)
                               ++|++|..|. ||||+|+..+    +..+++++|++ +      ||++|++|..|.||||||+..|+.++|
T Consensus       106 ---------din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~TpL~~A~~~~~~~~v  170 (186)
T 3t8k_A          106 ---------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS------GLQLLIKDKWGLTALEFVKRCQKPIAL  170 (186)
T ss_dssp             ---------CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST------TCCTTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred             ---------CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc------CCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence                     5899999999 9999999832    12468999998 6      678999999999999999999999999


Q ss_pred             HHHHHhhccc
Q 001315          991 KLVARKLADR 1000 (1102)
Q Consensus       991 eLLl~Kia~~ 1000 (1102)
                      ++|++.+.+.
T Consensus       171 ~~L~~~~~~~  180 (186)
T 3t8k_A          171 KMMEDYIKKY  180 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.79  E-value=2e-19  Score=175.55  Aligned_cols=125  Identities=18%  Similarity=0.180  Sum_probs=111.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.+++++||+.+    .+++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   97 (179)
T 3f6q_A           40 FSPLHWACREGRSAVVEMLIMRG----ARINVM-----NR-GDDTPLHLAASHGHRDIVQKLLQYKA------------D   97 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999964    334433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +++++.+|..|.||||+|+..++.+++++|+++.++-
T Consensus        98 ~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           98 INAVNEHGNVPLHYACFW-GQDQVAEDLVAN------GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             CCccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            789999999999999985 778999999998      5789999999999999999999999999999987765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=5.7e-20  Score=171.97  Aligned_cols=123  Identities=20%  Similarity=0.146  Sum_probs=100.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.||+..    .+++..     +. .|+||||+|+..|+.++|++||++|+            +
T Consensus        11 ~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~   68 (137)
T 3c5r_A           11 ETLLHIASIKGDIPSVEYLLQNG----SDPNVK-----DH-AGWTPLHEACNHGHLKVVELLLQHKA------------L   68 (137)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCcC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------c
Confidence            48999999999999999999853    333432     22 58899999999999999999999988            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      ++.+|..|.||||+|+.. ++.+++++|++.      +++++.+|..|.||||+|+..++.+++++|.+..+
T Consensus        69 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           69 VNTTGYQNDSPLHDAAKN-GHVDIVKLLLSY------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCCCGGGCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             ccCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            788899999999999984 778899999987      56789999999999999999998888888776543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.78  E-value=4.7e-19  Score=190.84  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=112.7

Q ss_pred             hhHHHHHHhcC--cchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          847 KFLLVFSVDRG--CCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       847 ktLL~FAadrG--wcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .++||+|+..|  +.++|++||+.++    +++..     +. .|+||||+|+..|+.++|++||++|++.       ..
T Consensus       139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga----~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------~~  201 (364)
T 3ljn_A          139 QTALHWCVGLGPEYLEMIKILVQLGA----SPTAK-----DK-ADETPLMRAMEFRNREALDLMMDTVPSK-------SS  201 (364)
T ss_dssp             CCHHHHHHHSCGGGHHHHHHHHHHTC----CTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHHCSCS-------SS
T ss_pred             CCHHHHHHHcCCchHHHHHHHHHcCC----CCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHhccccc-------cc
Confidence            59999999999  9999999999743    33322     22 5899999999999999999999999841       11


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      .++|.+|..|.||||+||.. |+.++|++|+++      +|++|.+|..|.||||+|+..|+.+++++|+++.++.
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILI-NWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             ccccccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            24899999999999999984 888999999998      5789999999999999999999999999999996553

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.78  E-value=8.1e-19  Score=175.82  Aligned_cols=135  Identities=17%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++|+++|+            +
T Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  131 (231)
T 3aji_A           74 WSPLHIAASAGXDEIVKALLVKG----AHVNAV-----NQ-NGCTPLHYAASKNRHEIAVMLLEGGA------------N  131 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCHHHHHHHHHHcC----CCCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999853    333322     22 58899999999999999999999987            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      ++.++..|.||||+|+.. ++.+++++|++.      ++++|.+|..|.||||+|+..|+.+++++|+++.++-    ..
T Consensus       132 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  204 (231)
T 3aji_A          132 PDAKDHYDATAMHRAAAK-GNLKMVHILLFY------KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE  204 (231)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCcCCCCCcHHHHHHHc-CCHHHHHHHHhc------CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            788899999999999985 678899999987      5678999999999999999999999999999987664    24


Q ss_pred             CceeeeeC
Q 001315         1003 GQVTIPVG 1010 (1102)
Q Consensus      1003 ~~v~l~i~ 1010 (1102)
                      |..++++.
T Consensus       205 g~t~l~~A  212 (231)
T 3aji_A          205 EKTPLQVA  212 (231)
T ss_dssp             SCCHHHHS
T ss_pred             CCCHHHHH
Confidence            66666654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.78  E-value=7.4e-19  Score=172.50  Aligned_cols=124  Identities=19%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.|++.   ++.+++..     +. .|.||||+|+..|+.++|++||++|..           +
T Consensus        73 ~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------~  132 (201)
T 3hra_A           73 DSPYLYAGAQGRTEILAYMLKH---ATPDLNKH-----NR-YGGNALIPAAEKGHIDNVKLLLEDGRE-----------D  132 (201)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH---SCCCTTCC-----CT-TSCCSHHHHHHTTCHHHHHHHHHHCCC-----------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhc---cCcccccc-----cC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------C
Confidence            4889999999999999998865   33333322     22 588999999999999999999998831           5


Q ss_pred             CCCCCCCCChHHHHHHhcCC----cHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          927 PNLAGPGGITPLHLAACTSD----SDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g----~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      +|.+|..|.||||+|+..+.    +.+++++|+++      +++++.+|.+|.||||+|+.+|+.+++++|+++
T Consensus       133 ~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN------GADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC------CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            78889999999999998533    16899999987      567899999999999999999999999998875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.78  E-value=3.5e-19  Score=183.27  Aligned_cols=136  Identities=16%  Similarity=0.165  Sum_probs=107.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|+.+++++|++...   .+++..      ...|.||||+|+..|+.++|++||++|+            +
T Consensus        91 ~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~  149 (253)
T 1yyh_A           91 RTPLHAAVSADAQGVFQILIRNRA---TDLDAR------MHDGTTPLILAARLAVEGMLEDLINSHA------------D  149 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTT---SCTTCC------CTTCCCHHHHHHHHTCSSHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC---CCcccc------CCCCCcHHHHHHHcChHHHHHHHHHcCC------------C
Confidence            478888888888888888888532   222222      2247888888888888888888888887            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.+|..|.||||+|+.. +..+++++|++.      ++++|.+|..|.||||+|+.+|+.+++++|+++.++.    ..
T Consensus       150 ~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  222 (253)
T 1yyh_A          150 VNAVDDLGKSALHWAAAV-NNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM  222 (253)
T ss_dssp             TTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccC
Confidence            788899999999999985 677899999987      5678999999999999999999999999999987664    24


Q ss_pred             CceeeeeC
Q 001315         1003 GQVTIPVG 1010 (1102)
Q Consensus      1003 ~~v~l~i~ 1010 (1102)
                      |..++++.
T Consensus       223 g~tpl~~A  230 (253)
T 1yyh_A          223 DRLPRDIA  230 (253)
T ss_dssp             CCCHHHHH
T ss_pred             CCCHHHHH
Confidence            55555553

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.78  E-value=3.9e-19  Score=179.95  Aligned_cols=131  Identities=19%  Similarity=0.214  Sum_probs=107.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.|++...+....  ..  .......|.||||+|+..|+.++|++||++|+            +
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~  142 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLH--SI--LKATNYNGHTCLHLASIHGYLGIVELLVSLGA------------D  142 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSS--CG--GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHH--HH--hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999964321100  00  00112258899999999999999999999998            5


Q ss_pred             CCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~-~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.++. .|.||||+|+.. ++.++|++|+++      +|+++.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus       143 ~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDL-QNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            788887 999999999985 788899999987      5789999999999999999999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.78  E-value=1.2e-18  Score=178.37  Aligned_cols=134  Identities=18%  Similarity=0.094  Sum_probs=106.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+.+|+.++|+.||+...+.. .++..      ...|+||||+||..|+.++|++||++|+            +
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------------~   70 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQ------NDLGQTALHLAAILGEASTVEKLYAAGA------------G   70 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSG-GGGCC------CTTSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcc-ccccc------CCCCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            489999999999999999999765411 01211      2258999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCC-----------------------------------------CCCC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEI-----------------------------------------GPSS  965 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~i-----------------------------------------GagA  965 (1102)
                      ++.++..|+||||+|+.. ++.+++++|+++....                                         ..++
T Consensus        71 ~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (282)
T 1oy3_D           71 VLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (282)
T ss_dssp             SSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             CCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence            788888999999999874 7788999998863210                                         0123


Q ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          966 WNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       966 ~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +++.+|..|.||||+|+..|+.+++++|+++.++-
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  184 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL  184 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            47888999999999999999999999999886654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.78  E-value=1.3e-18  Score=173.43  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||+|+..|+.++++.|++..    .+++..     + ..|.||||+|+..|+.++|++||++|+            ++
T Consensus        94 t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~  151 (223)
T 2f8y_A           94 TPLILAARLAVEGMLEDLINSH----ADVNAV-----D-DLGKSALHWAAAVNNVDAAVVLLKNGA------------NK  151 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCTTCB-----C-TTSCBHHHHHHHTTCHHHHHHHHHTTC------------CT
T ss_pred             cHHHHHHHhCcHHHHHHHHHcC----CCCcCc-----C-CCCCcHHHHHHHcCCHHHHHHHHHcCC------------CC
Confidence            6777777777777777777642    222222     1 136677777777777777777777766            45


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |.+|..|.||||+|+.. +..+++++|+++      +++++.+|..|.||||+|+.+|+.+++++|+++.+.+
T Consensus       152 ~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          152 DMQNNREETPLFLAARE-GSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCcCCCCcCHHHHHHHc-CCHHHHHHHHHc------CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            66677777777777764 556677777766      4566777777777777777777777777777766554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.78  E-value=9.1e-19  Score=174.54  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=108.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++...   .+++..      ...|.||||+|+..|+.++|++|+++|+            +
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  117 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRA---TDLDAR------MHDGTTPLILAARLAVEGMLEDLINSHA------------D  117 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTT---SCTTCC------CTTCCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC---CCcccC------CCCCCcHHHHHHHhCcHHHHHHHHHcCC------------C
Confidence            489999999999999999998532   222322      2258899999999999999999999988            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. +..+++++|+++      ++++|.+|..|.||||+|+.+|+.+++++|+++.++.
T Consensus       118 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          118 VNAVDDLGKSALHWAAAV-NNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR  184 (223)
T ss_dssp             TTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CcCcCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            788899999999999985 778899999987      5679999999999999999999999999999987654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.77  E-value=3.7e-19  Score=182.75  Aligned_cols=127  Identities=19%  Similarity=0.150  Sum_probs=89.0

Q ss_pred             hhh-hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          845 RFK-FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       845 Rfk-tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      .+. ++||+|+.+|+.++++.||+.+    .+++..     +. .|+||||+||..|+.++|++||++|+          
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga----------   94 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEV----DDPSLP-----ND-EGITALHNAVCAGHTEIVKFLVQFGV----------   94 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTT----SSCCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHHTC----------
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC----------
Confidence            344 6777777777777777777643    233322     12 47778888888888888888887776          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCC-CHHHHH--HHcCCHHHHHHHHHhhccc
Q 001315          924 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGH-SPYSYA--LMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~-TPLHyA--a~~G~~eiVeLLl~Kia~~ 1000 (1102)
                        ++|.+|..|+||||+||.. ++.++|++|+++      +|+++.+|..|. ||||+|  +.+|+.+++++|+++.++.
T Consensus        95 --~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B           95 --NVNAADSDGWTPLHCAASC-NNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             --CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             --CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence              4677777778888887764 667777777776      456777777766 888877  6677777777777776665

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.77  E-value=2.4e-19  Score=180.61  Aligned_cols=125  Identities=20%  Similarity=0.170  Sum_probs=103.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIF  925 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~-GAd~~~gsa~~ylf  925 (1102)
                      .++||+|+.+|+.++++.||+.+    .+++..     +. .|+||||+||..|+.++|++||++ |+            
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~------------  131 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNR----VGVNGL-----DK-AGSTALYWACHGGHKDIVEMLFTQPNI------------  131 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHTTSTTC------------
T ss_pred             ccccccccccCcHHHHHHHHhCC----CCcccc-----CC-CCCCHHHHHHHcCCHHHHHHHHcCCCC------------
Confidence            48999999999999999999953    334433     22 599999999999999999999998 87            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++|.+|..|.||||+|+.. |+.++|++|++.      +|+++++|.+|.||||+|+..|+.+++++|+++.+..
T Consensus       132 ~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          132 ELNQQNKLGDTALHAAAWK-GYADIVQLLLAK------GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CccccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            5789999999999999995 788999999997      5789999999999999999999999999998887765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.77  E-value=5e-19  Score=182.65  Aligned_cols=125  Identities=19%  Similarity=0.133  Sum_probs=110.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.||+.++    +++..     +. .|+||||+||..|+.++|++||++|+            +
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~-----d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga------------~   79 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMN----DPSQP-----NE-EGITALHNAICGANYSIVDFLITAGA------------N   79 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSS----CTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCC----CCCCC-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            489999999999999999999643    33432     22 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCC-CCCCCHHHHH--HHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYA--LMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD-~~G~TPLHyA--a~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|+||||+|+.. |+.++|++|++.      +++++.+| .+|.||||+|  +..|+.+++++|+++.++-
T Consensus        80 ~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASC-NDTVICMALVQH------GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence            789999999999999985 788999999997      56899997 5999999999  9999999999999997665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=7.2e-19  Score=173.29  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .-.++||+|+.+|+.++++.||+ .    .+++..     +. .|+||||+|+..|+.++|++||++|+           
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~----~~~~~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga-----------  100 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-D----RDVDAV-----DE-NGRTALLFVAGLGSDKCVRLLAEAGA-----------  100 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-T----SCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-c----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            44699999999999999999998 3    233433     22 59999999999999999999999998           


Q ss_pred             CCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHc
Q 001315          925 FPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMK  984 (1102)
Q Consensus       925 fdpnakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~  984 (1102)
                       ++|.++ ..|+||||+|+.. ++.+++++|+++      +++++.+|.+|.||||+|+..
T Consensus       101 -~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          101 -DLDHRDMRGGLTALHMAAGY-VRPEVVEALVEL------GADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             -CTTCCCSSSSCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHH
T ss_pred             -CCCcCCCCCCCCHHHHHHhc-CcHHHHHHHHHc------CCCCcCCCCCCCCHHHHHHHh
Confidence             578888 8899999999985 788999999997      578999999999999999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.77  E-value=2.3e-18  Score=180.85  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=119.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT-------  919 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gs-------  919 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     + ..|.||||+|+..|+.++|++||++|++.....       
T Consensus        92 ~t~L~~A~~~g~~~iv~~Ll~~g----~~~~~~-----~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l  161 (351)
T 3utm_A           92 LVPLHNACSYGHYEVTELLLKHG----ACVNAM-----D-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV  161 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----C-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHHCC----CCCCCC-----C-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcch
Confidence            48999999999999999999964    333322     2 258999999999999999999999998632100       


Q ss_pred             ---------------------------------------------------C-------C---C----------cCCCCC
Q 001315          920 ---------------------------------------------------P-------Q---K----------YIFPPN  928 (1102)
Q Consensus       920 ---------------------------------------------------a-------~---~----------ylfdpn  928 (1102)
                                                                         +       .   +          +..++|
T Consensus       162 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~  241 (351)
T 3utm_A          162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN  241 (351)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT
T ss_pred             HHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC
Confidence                                                               0       0   0          123788


Q ss_pred             CCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCc
Q 001315          929 LAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQ 1004 (1102)
Q Consensus       929 akd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~ 1004 (1102)
                      .+|..|.||||+|+.. ++.++|++|++.      ++++|.+|..|.||||+|+.+|+.++|++|++++++.    .+|.
T Consensus       242 ~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~  314 (351)
T 3utm_A          242 EKNKDFMTPLHVAAER-AHNDVMEVLHKH------GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF  314 (351)
T ss_dssp             CCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CcCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCC
Confidence            8999999999999985 778899999987      5789999999999999999999999999999997765    2577


Q ss_pred             eeeeeCcc
Q 001315         1005 VTIPVGVE 1012 (1102)
Q Consensus      1005 v~l~i~~~ 1012 (1102)
                      .++.+...
T Consensus       315 tal~~a~~  322 (351)
T 3utm_A          315 TAAQMGNE  322 (351)
T ss_dssp             CHHHHSCH
T ss_pred             ChhhhhhH
Confidence            77777654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.77  E-value=1.4e-18  Score=178.77  Aligned_cols=122  Identities=15%  Similarity=0.161  Sum_probs=107.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.||+.+    .+++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga------------~  182 (253)
T 1yyh_A          125 TTPLILAARLAVEGMLEDLINSH----ADVNAV-----DD-LGKSALHWAAAVNNVDAAVVLLKNGA------------N  182 (253)
T ss_dssp             CCHHHHHHHHTCSSHHHHHHHTT----CCTTCB-----CT-TSCBHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcChHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999954    334433     22 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++      +|+++.+|..|.||||+|+.+||.+++++|...-
T Consensus       183 ~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          183 KDMQNNREETPLFLAARE-GSYETAKVLLDH------FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCCcCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            789999999999999985 788899999998      5789999999999999999999999999998653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.77  E-value=1.7e-18  Score=174.11  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=114.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++..   ..+++..      ...|.||||+|+..|+.++|++|+++|+            +
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  136 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNG---QMDVNCQ------DDGGWTPMIWATEYKHVDLVKLLLSKGS------------D  136 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTT---CCCTTCC------CTTSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCC---CCCcccC------CCCCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            48999999999999999999853   2333322      2258899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      ++.++..|.||||+|+.. +..+++++|++.      ++++|.+|..|.||||+|+..|+.+++++|+++.++.    .+
T Consensus       137 ~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  209 (237)
T 3b7b_A          137 INIRDNEENICLHWAAFS-GCVDIAEILLAA------KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE  209 (237)
T ss_dssp             TTCCCTTSCCHHHHHHHH-CCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCccCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCC
Confidence            788999999999999986 778899999987      5689999999999999999999999999999987764    25


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      |..++++..
T Consensus       210 g~t~l~~A~  218 (237)
T 3b7b_A          210 GETPLQCAS  218 (237)
T ss_dssp             SCCHHHHSC
T ss_pred             CCCHHHHHH
Confidence            666666643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.76  E-value=7.2e-19  Score=180.59  Aligned_cols=134  Identities=18%  Similarity=0.115  Sum_probs=92.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|+.|+..+..++++.||+.+.+  ++.        .. .+.||||+|+..|+.++|++||++|+            +
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~--~~~--------~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~------------~   62 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMR--VKF--------NP-LPLALLLDSSLEGEFDLVQRIIYEVD------------D   62 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS------------S
T ss_pred             cccCchhhhhhhHHHHHHHhccCCC--ccc--------Cc-hhhHHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            4899999999999999999997644  221        11 47899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.+|..|.||||+||.. |+.++|++|+++      ++++|.+|.+|.||||+|+..|+.+++++|+++.++-    .+
T Consensus        63 ~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  135 (239)
T 1ycs_B           63 PSLPNDEGITALHNAVCA-GHTEIVKFLVQF------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS  135 (239)
T ss_dssp             CCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             CCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC
Confidence            789999999999999985 788999999997      5789999999999999999999999999999997765    13


Q ss_pred             Cc-eeeeeC
Q 001315         1003 GQ-VTIPVG 1010 (1102)
Q Consensus      1003 ~~-v~l~i~ 1010 (1102)
                      +. .++.+.
T Consensus       136 ~~~t~l~~a  144 (239)
T 1ycs_B          136 DMQTAADKC  144 (239)
T ss_dssp             SCCCHHHHC
T ss_pred             CCcchHHHH
Confidence            33 777765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.76  E-value=1e-18  Score=176.81  Aligned_cols=143  Identities=17%  Similarity=0.090  Sum_probs=118.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.+++++||+.+    ++++..     +. .|.||||+|+..|+.++|++|+++|++.      .+...
T Consensus        46 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~  109 (236)
T 1ikn_D           46 QTPLHLAVITNQPEIAEALLGAG----CDPELR-----DF-RGNTPLHLACEQGCLASVGVLTQSCTTP------HLHSI  109 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCC----CCSCCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHSTTTT------SSSCG
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHcCCHHHHHHHHhcccch------hHHHH
Confidence            49999999999999999999853    344433     22 5899999999999999999999998741      11113


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~-~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      ++..+..|.||||+|+.. ++.++|++|++.      ++++|.+|. .|.||||+|+..|+.++|++|+++.++.    .
T Consensus       110 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  182 (236)
T 1ikn_D          110 LKATNYNGHTCLHLASIH-GYLGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY  182 (236)
T ss_dssp             GGCCCTTCCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT
T ss_pred             hhccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccC
Confidence            578899999999999985 788999999997      578999998 9999999999999999999999997764    2


Q ss_pred             CCceeeeeCcc
Q 001315         1002 NGQVTIPVGVE 1012 (1102)
Q Consensus      1002 ~~~v~l~i~~~ 1012 (1102)
                      .|..+|.+...
T Consensus       183 ~g~tpl~~A~~  193 (236)
T 1ikn_D          183 QGYSPYQLTWG  193 (236)
T ss_dssp             TCCCGGGGCTT
T ss_pred             CCCCHHHHHHc
Confidence            57777766543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.76  E-value=2.8e-18  Score=171.94  Aligned_cols=134  Identities=18%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++..    .+++..     +. .|.||||+|+..|+.++|++|+++|+            +
T Consensus        41 ~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   98 (231)
T 3aji_A           41 RTALHWACSAGHTEIVEFLLQLG----VPVNDK-----DD-AGWSPLHIAASAGXDEIVKALLVKGA------------H   98 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCcHHHHHHHHHhC----CCCCCc-----CC-CCCCHHHHHHHcCHHHHHHHHHHcCC------------C
Confidence            48999999999999999999963    333433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      ++.++..|.||||+|+.. +..+++++|++.      +++++.+|..|.||||+|+..|+.+++++|+++.++-    .+
T Consensus        99 ~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  171 (231)
T 3aji_A           99 VNAVNQNGCTPLHYAASK-NRHEIAVMLLEG------GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE  171 (231)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC
Confidence            788999999999999985 778899999987      5679999999999999999999999999999986653    23


Q ss_pred             Cceeeee
Q 001315         1003 GQVTIPV 1009 (1102)
Q Consensus      1003 ~~v~l~i 1009 (1102)
                      |..+|.+
T Consensus       172 g~t~L~~  178 (231)
T 3aji_A          172 GNTPLHL  178 (231)
T ss_dssp             SCCHHHH
T ss_pred             CCCHHHH
Confidence            5555444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.76  E-value=2.8e-18  Score=182.97  Aligned_cols=148  Identities=14%  Similarity=0.051  Sum_probs=112.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHH-cCCCCC----CCCC-
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH-YSLTSS----NDTP-  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~-~GAd~~----~gsa-  920 (1102)
                      .++|++|+..|+.++++.|++.+++-++..............|.||||+|+++|+.++|++||+ .|++.+    .|.. 
T Consensus       126 ~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~  205 (337)
T 4g8k_A          126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA  205 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcH
Confidence            4899999999999999999997544211111110111122358999999999999999999996 577542    1110 


Q ss_pred             ----------C----------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH
Q 001315          921 ----------Q----------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       921 ----------~----------~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy  980 (1102)
                                .          .+..++|.+|..|+||||+||.. +..++|++|+...     ++++|++|.+|+||||+
T Consensus       206 l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~-~~~~~v~~Ll~~~-----~~~vn~~d~~G~TpL~~  279 (337)
T 4g8k_A          206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLL  279 (337)
T ss_dssp             HHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT-TCHHHHHHHHTST-----TCCTTCBCTTSCBHHHH
T ss_pred             HHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-hhhHHHHHHHHhc-----CCcccCcCCCCCCHHHH
Confidence                      0          01247899999999999999985 7788999998752     57899999999999999


Q ss_pred             HHHcCCHHHHHHHHHhhccc
Q 001315          981 ALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |+++|+.++|++|++++++.
T Consensus       280 A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          280 AVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             HHHTTCHHHHHHHHTTSCSS
T ss_pred             HHHcCCHHHHHHHHHCCCCC
Confidence            99999999999999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=186.41  Aligned_cols=138  Identities=17%  Similarity=0.110  Sum_probs=113.7

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~---gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .+|+.|+..|....++.||+..    .+++...+.......|.||||+||..   |+.++|++||++|+           
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----------  217 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-----------  217 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT----CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-----------
T ss_pred             HHHhhhhhccCHHHHHHHHhcC----CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-----------
Confidence            6799999999999999999754    33332100000123589999999997   99999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccccCCc
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQ 1004 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~~~~ 1004 (1102)
                       ++|.+|..|.||||+||.. |+.++|++|+++      +|+++++|.+|.||||+|+..|+.+++++|+++.++  .|.
T Consensus       218 -dvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--~g~  287 (301)
T 2b0o_E          218 -HLDAKAADGNTALHYAALY-NQPDCLKLLLKG------RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--TFA  287 (301)
T ss_dssp             -CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--TTS
T ss_pred             -CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--CCC
Confidence             5789999999999999985 788999999997      578999999999999999999999999999999887  455


Q ss_pred             eeeeeC
Q 001315         1005 VTIPVG 1010 (1102)
Q Consensus      1005 v~l~i~ 1010 (1102)
                      .+|.+.
T Consensus       288 tpLh~A  293 (301)
T 2b0o_E          288 FPLHVD  293 (301)
T ss_dssp             SCCC--
T ss_pred             ChhHHH
Confidence            556554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.76  E-value=2.2e-18  Score=171.96  Aligned_cols=140  Identities=16%  Similarity=0.096  Sum_probs=114.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+.+  ++++..     ....|.||||+|+..|+.++|++|+++|+.          .+
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~-----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~~   99 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMEN--VNLDDY-----PDDSGWTPFHIACSVGNLEVVKSLYDRPLK----------PD   99 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTT--CCGGGC-----CCTTSCCHHHHHHHHCCHHHHHHHHSSSSC----------CC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccc--cccccc-----CCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------cc
Confidence            4899999999999999999996532  222210     122589999999999999999999999842          15


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh-ccc----c
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL-ADR----R 1001 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki-a~~----~ 1001 (1102)
                      ++.++..|.||||+|+.. +..+++++|++.      +++++.+|..|.||||+|+..|+.+++++|+++. ++.    .
T Consensus       100 ~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          100 LNKITNQGVTCLHLAVGK-KWFEVSQFLIEN------GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             cccCCcCCCCHHHHHHHc-CCHhHHHHHHHc------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            788999999999999985 788899999997      5679999999999999999999999999999987 432    2


Q ss_pred             CCceeeeeC
Q 001315         1002 NGQVTIPVG 1010 (1102)
Q Consensus      1002 ~~~v~l~i~ 1010 (1102)
                      .|..+|.+.
T Consensus       173 ~g~t~L~~A  181 (228)
T 2dzn_A          173 QGWTPLFHA  181 (228)
T ss_dssp             TSCCHHHHH
T ss_pred             CCCCHHHHH
Confidence            455555553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.76  E-value=4e-18  Score=170.97  Aligned_cols=132  Identities=20%  Similarity=0.166  Sum_probs=90.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.|++.+...+.+++..     +. .|+||||+|+..|+.++|++|+++|+            +
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   71 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-----NN-LRQTPLHLAVITTLPSVVRLLVTAGA------------S   71 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-----cc-cCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            478899999999999999888765555555543     22 48899999999999999999998887            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.++..|.||||+|+.. +..+++++|++.....  ..+++.+|..|.||||+|+..|+.+++++|+++.++
T Consensus        72 ~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  141 (241)
T 1k1a_A           72 PMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD  141 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTT--SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCc--cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            556666666666666663 5556666666552110  124566666666666666666666666666666443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.76  E-value=2e-18  Score=178.91  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=108.2

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      .-.++||+|+.+|+.++++.||+ .    .+++..     +. .|+||||+|+..|+.++|++||++|+           
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~----~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga-----------  101 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-D----RDVDAV-----DE-NGRTALLFVAGLGSDKCVRLLAEAGA-----------  101 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-T----CCTTCB-----CT-TSCBHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-C----CCCCCc-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC-----------
Confidence            34699999999999999999998 3    233433     22 59999999999999999999999998           


Q ss_pred             CCCCCCC-CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH----------------HcCCH
Q 001315          925 FPPNLAG-PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL----------------MKNNH  987 (1102)
Q Consensus       925 fdpnakd-~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa----------------~~G~~  987 (1102)
                       ++|.++ ..|+||||+|+.. |+.++|++|+++      +|++|++|..|.||||+|+                ..|+.
T Consensus       102 -~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~  173 (244)
T 3ui2_A          102 -DLDHRDMRGGLTALHMAAGY-VRPEVVEALVEL------GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE  173 (244)
T ss_dssp             -CTTCCCSSSCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHH
T ss_pred             -CCCcCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChH
Confidence             578888 8899999999985 788999999998      5789999999999999988                67999


Q ss_pred             HHHHHHHHhhcc
Q 001315          988 AYNKLVARKLAD  999 (1102)
Q Consensus       988 eiVeLLl~Kia~  999 (1102)
                      +++++|+++..+
T Consensus       174 ~iv~~L~~~~~~  185 (244)
T 3ui2_A          174 KVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHEE
T ss_pred             HHHHHHHHhccc
Confidence            999999987554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.75  E-value=3.4e-18  Score=167.77  Aligned_cols=127  Identities=17%  Similarity=0.038  Sum_probs=104.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++++.||+.+    .+++..      ...|.||||+|+..|+.++|++||+++..           +
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~------~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-----------~   98 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALIDRG----ADINLQ------NSISDSPYLYAGAQGRTEILAYMLKHATP-----------D   98 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC------CTTSCCHHHHHHHTTCHHHHHHHHHHSCC-----------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHhccCc-----------c
Confidence            48999999999999999999864    333322      22588999999999999999999955431           5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCC-----HHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNN-----HAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~-----~eiVeLLl~Kia~~ 1000 (1102)
                      ++.++..|.||||+|+.. ++.+++++|++.    | .+++|.+|..|.||||+|+..|+     .+++++|+++.++-
T Consensus        99 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~----g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A           99 LNKHNRYGGNALIPAAEK-GHIDNVKLLLED----G-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             TTCCCTTSCCSHHHHHHT-TCHHHHHHHHHH----C-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             cccccCCCCcHHHHHHHc-CCHHHHHHHHHc----C-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            788899999999999985 778899999987    2 26789999999999999999888     89999999987654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.75  E-value=6.8e-18  Score=171.73  Aligned_cols=126  Identities=22%  Similarity=0.211  Sum_probs=110.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+.+|..++++.|++..    .+++..     ....|.||||+|+..|+.++|++||++|+            +
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~   64 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGG----ANVNFQ-----EEEGGWTPLHNAVQMSREDIVELLLRHGA------------D   64 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTT----CCTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             chHHHHHHHcCCHHHHHHHHHcC----CCcccc-----cCCCCCcHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            48999999999999999999964    333322     12358999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++.+|..|.||||+|+.. ++.+++++|+++      +++++.+|..|.||||+|+..|+.+++++|+++.++-
T Consensus        65 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  131 (285)
T 1wdy_A           65 PVLRKKNGATPFLLAAIA-GSVKLLKLFLSK------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV  131 (285)
T ss_dssp             TTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CcccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence            788999999999999985 788999999997      5679999999999999999999999999999986653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.75  E-value=1.4e-18  Score=187.27  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=118.7

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCC------------CChHHHhhhcCchHHHHHHHcC--CHHHHHHHHHc
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDG------------LSRESLEMLWEIQLLNRAVKMK--CRRMVDLLIHY  911 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~------------~s~e~~~~~~g~TlLH~AV~~g--s~~IVeLLL~~  911 (1102)
                      -.++||+|+.+|+.+++++||+...+.+.+.+.            .... .....|.||||+|+..|  +.++|++||++
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH-VKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTE-EEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccc-cCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            358999999999999999999985442222110            0000 01225899999999999  99999999999


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Q 001315          912 SLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNK  991 (1102)
Q Consensus       912 GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVe  991 (1102)
                      |+            ++|.+|..|.||||+|+.. |+.++|++|++.+... .+.++|.+|..|.||||+|+..|+.++|+
T Consensus       163 ga------------~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          163 GA------------SPTAKDKADETPLMRAMEF-RNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             TC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             CC------------CCcccCCCCCCHHHHHHHc-CCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHH
Confidence            98            5789999999999999985 7889999999872210 02339999999999999999999999999


Q ss_pred             HHHHhhccc----cCCceeeeeCc
Q 001315          992 LVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       992 LLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      +|+++.++-    ..|..+|.+..
T Consensus       229 ~Ll~~gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          229 RFVEMGIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHH
Confidence            999997765    25667766654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.75  E-value=1.7e-18  Score=183.03  Aligned_cols=123  Identities=14%  Similarity=0.137  Sum_probs=107.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.||+.+++    ++..        .|+||||+|+..|+.++|++||++|+            +
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~--------~g~t~L~~A~~~g~~~~v~~Ll~~ga------------~   87 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGAL----KNLL--------ENEFPLHQAATLEDTKIVKILLFSGL------------D   87 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGG----GSCC--------TTCCHHHHHTTSSSCHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC----CCCC--------CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            4899999999999999999996433    3322        48999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCC-CCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASG-HSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G-~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|+||||+|+.. ++.++|++|+++      +++++.+|..| .||||+|+..|+.+++++|+++.++.
T Consensus        88 ~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           88 DSQFDDKGNTALYYAVDS-GNMQTVKLFVKK------NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHH------CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             CCCcCCCCCcHHHHHHHc-CCHHHHHHHHhc------CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            788999999999999985 788899999987      57899999999 79999999999999999999987655

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.75  E-value=5.3e-19  Score=186.89  Aligned_cols=116  Identities=18%  Similarity=0.159  Sum_probs=101.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+..++.++++.||+.+    ++++..     +. .|+||||+||+.|+.++|++||++|+            +
T Consensus       120 ~t~l~~a~~~~~~~~~~~Ll~~g----~~~n~~-----d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga------------d  177 (269)
T 4b93_B          120 AVPLHLACQQGHFQVVKCLLDSN----AKPNKK-----DL-SGNTPLIYACSGGHHELVALLLQHGA------------S  177 (269)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCSCCC-----CT-TCCCHHHHHHHTTCGGGHHHHHHTTC------------C
T ss_pred             CCccccccccChHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCC------------C
Confidence            48999999999999999999954    444433     22 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      +|.++..|.||||+||.. |+.++|++|+++      ||++|++|.+|+||||||+++|+  ++++|
T Consensus       178 vn~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          178 INASNNKGNTALHEAVIE-KHVFVVELLLLH------GASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             TTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CCccccCCCcHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            899999999999999985 788999999998      57899999999999999998775  55554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.74  E-value=2.9e-18  Score=188.79  Aligned_cols=136  Identities=16%  Similarity=0.144  Sum_probs=100.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.+++++|++...+    .+..      ...|.||||+|++.|+.++|++|+++|+            +
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~  303 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQAN----GNLG------NKSGLTPLHLVAQEGHVPVADVLIKHGV------------M  303 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCC----TTCC------CTTCCCHHHHHHHHTCHHHHHHHHHHTC------------C
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCC----CCCC------CCCCCCHHHHHHHcCCHHHHHHHHhCCc------------c
Confidence            3788888888888888888775322    2211      1247788888888888888888888877            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.++..|.||||+|+.. |+.++|++|+++      ++++|.+|..|.||||+|+.+|+.++|++|++++++.    .+
T Consensus       304 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  376 (437)
T 1n11_A          304 VDATTRMGYTPLHVASHY-GNIKLVKFLLQH------QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  376 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHS-SCSHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             CCCCCCCCCCHHHHHHHc-CcHHHHHHHHhc------CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCC
Confidence            677888888888888875 666788888876      5678888888888888888888888888888876654    24


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      |..++++..
T Consensus       377 g~t~l~~A~  385 (437)
T 1n11_A          377 GTTPLAIAK  385 (437)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            666666543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.74  E-value=9.8e-18  Score=178.74  Aligned_cols=140  Identities=18%  Similarity=0.083  Sum_probs=106.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTP------  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa------  920 (1102)
                      .++|+.|+.+|+.++|++||+.++    +++..     +...|+||||+||+.|+.+||++||++|++......      
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Ga----dvn~~-----~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~   96 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGA----NVNFQ-----EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF   96 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTC----CTTCC-----CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCC----CCCcc-----CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchh
Confidence            489999999999999999999753    34422     233589999999999999999999999996421111      


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC----CCCCcCCCCCCCCHHHHH
Q 001315          921 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGP----SSWNSILDASGHSPYSYA  981 (1102)
Q Consensus       921 ---------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGa----gA~vNarD~~G~TPLHyA  981 (1102)
                                     ..+..++|.+|..|.||||+|+.. +..+++++|++++..+..    ..+.+..|..|.||||+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A  175 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  175 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred             HHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Confidence                           011347899999999999999985 788899999987322110    112234566799999999


Q ss_pred             HHcCCHHHHHHHHHh
Q 001315          982 LMKNNHAYNKLVARK  996 (1102)
Q Consensus       982 a~~G~~eiVeLLl~K  996 (1102)
                      +.+|+.++|++|+++
T Consensus       176 ~~~g~~~~v~~LL~~  190 (337)
T 4g8k_A          176 AEKGHVEVLKILLDE  190 (337)
T ss_dssp             HHHTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhc
Confidence            999999999999965

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.74  E-value=9.7e-18  Score=170.57  Aligned_cols=127  Identities=18%  Similarity=0.190  Sum_probs=111.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC----RRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs----~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      .++||+|+.+|+.++++.|++.   .+.+++..     +. .|.||||+|+..++    .+++++|+++|+         
T Consensus       149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~-----~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~---------  210 (285)
T 1wdy_A          149 ATALMDAAEKGHVEVLKILLDE---MGADVNAC-----DN-MGRNALIHALLSSDDSDVEAITHLLLDHGA---------  210 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCC-----CT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTC---------
T ss_pred             CcHHHHHHHcCCHHHHHHHHHh---cCCCCCcc-----CC-CCCCHHHHHHHccccchHHHHHHHHHHcCC---------
Confidence            4899999999999999999985   13444433     22 58999999999999    999999999998         


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          923 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                         ++|.+|..|.||||+|+.. ++.+++++|++..     ++++|.+|..|.||||+|+.+|+.+++++|++++++.
T Consensus       211 ---~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~-----g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          211 ---DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             ---CSSCCCTTSCCHHHHHHHT-TCHHHHHHHHHSS-----SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             ---CCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcc-----CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence               5789999999999999985 7888999999831     5689999999999999999999999999999998875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.74  E-value=7.8e-18  Score=175.04  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+..|+.++|+.||+.+    .+++..     +. .|.||||+||..|+.++|++||++|+            +
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga------------~   98 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERG----ADINYA-----NV-DGLTALHQACIDDNVDMVKFLVENGA------------N   98 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHC----CCTTCB-----CT-TCCBHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            48999999999999999999964    334433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy  980 (1102)
                      +|.+|..|+||||+|+.. |+.++|++|+++      +++++.+|.+|.||||+
T Consensus        99 ~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~  145 (299)
T 1s70_B           99 INQPDNEGWIPLHAAASC-GYLDIAEYLISQ------GAHVGAVNSEGDTPLDI  145 (299)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCCCcHHHHHHHc-CCHHHHHHHHhC------CCCCCCcCCCCCCHHHH
Confidence            788999999999999986 788899999997      34566666544433333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.74  E-value=8e-18  Score=176.72  Aligned_cols=126  Identities=21%  Similarity=0.194  Sum_probs=110.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|+.|+..|..+.++.||..   .+++++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~-----d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~   83 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTP---LNVNCHAS-----DG-RKSTPLHLAAGYNRVRIVQLLLQHGA------------D   83 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCS-----ST-TCCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             chhHHHHHHcCCHHHHHHHHHh---cCCCcccC-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            4899999999999999998874   23443433     22 58999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +|.+|..|.||||+|+.. |+.+||++|+++      +++++.+|..|.||||+|+..|+.+++++|+++.++-
T Consensus        84 ~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  150 (351)
T 3utm_A           84 VHAKDKGGLVPLHNACSY-GHYEVTELLLKH------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP  150 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCccCCCCCcHHHHHHHC-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            789999999999999985 788999999998      5679999999999999999999999999999987664

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.73  E-value=8.3e-18  Score=177.35  Aligned_cols=134  Identities=16%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++...    +++..      . .|.||||+|+..|+.++|++||++|+            +
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~------~-~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~  182 (285)
T 3d9h_A          126 HTPLFNACVSGSWDCVNLLLQHGA----SVQPE------S-DLASPIHEAARRGHVECVNSLIAYGG------------N  182 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC----CSSCS------C-TTSCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCHHHHHHHHHHCCC----CCCCC------C-CCCCHHHHHHHcCCHHHHHHHHHCCC------------C
Confidence            489999999999999999988543    22211      1 37899999999999999999999987            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +|.+|..|.||||+|+.. ++.++|++|++.      ++++|. |..|.||||+|+..|+.+++++|+++.++.    .+
T Consensus       183 ~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~  254 (285)
T 3d9h_A          183 IDHKISHLGTPLYLACEN-QQRACVKKLLES------GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE  254 (285)
T ss_dssp             TTCCBTTTBCHHHHHHHT-TCHHHHHHHHHT------TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCcCCCCCCHHHHHHHc-CcHHHHHHHHHC------CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            788999999999999985 788899999987      456774 889999999999999999999999997664    35


Q ss_pred             CceeeeeCc
Q 001315         1003 GQVTIPVGV 1011 (1102)
Q Consensus      1003 ~~v~l~i~~ 1011 (1102)
                      |+.+|++..
T Consensus       255 g~t~l~~A~  263 (285)
T 3d9h_A          255 GKRPVELVP  263 (285)
T ss_dssp             SCCGGGGSC
T ss_pred             CCCHHHHhc
Confidence            777777764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.73  E-value=4.7e-18  Score=186.12  Aligned_cols=131  Identities=18%  Similarity=0.161  Sum_probs=108.6

Q ss_pred             hhHHHHHHhcC---cchhHHHHHHHHHhccccCCCCChH--HHhhhcCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCC
Q 001315          847 KFLLVFSVDRG---CCALVKAILDILVEGNLSMDGLSRE--SLEMLWEIQLLNRAVKMKCRRMVDLLIHYS-LTSSNDTP  920 (1102)
Q Consensus       847 ktLL~FAadrG---wcaVVK~LLd~L~~g~v~i~~~s~e--~~~~~~g~TlLH~AV~~gs~~IVeLLL~~G-Ad~~~gsa  920 (1102)
                      .++||+|+.++   ..+++++|++.+++    ++.....  ......|.||||+|+..|+.++|++||+++ +       
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~----~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-------  304 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAK----VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS-------  304 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCC----SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC-------
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCC----cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC-------
Confidence            48999999988   89999999997544    2211000  001225899999999999999999999886 5       


Q ss_pred             CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          921 QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       921 ~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                           ++|.+|..|.||||+||.. |+.+||++|+++      +|++|++|..|.||||+|+.+||.++|++|+++.+++
T Consensus       305 -----~~n~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~------gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          305 -----NKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQ------GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             -----CccCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence                 5799999999999999995 788999999998      5789999999999999999999999999999987664

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.73  E-value=1.1e-17  Score=154.12  Aligned_cols=104  Identities=21%  Similarity=0.120  Sum_probs=92.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .+.|+||+|++.|+.++|++||++|+            ++|.+|..|+||||+|+.. ++.+++++|++.      ++++
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~   66 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGE------------DVNRTLEGGRKPLHYAADC-GQLEILEFLLLK------GADI   66 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTC------------CTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTT------TCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC------------CcCccCCCCCcHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            47899999999999999999999998            5789999999999999985 788999999987      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      |.+|..|.||||+|+..|+.+++++|+++.++.    ..|..++.+.
T Consensus        67 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            999999999999999999999999999987654    2566666665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.73  E-value=2.5e-17  Score=165.67  Aligned_cols=125  Identities=20%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|..++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++|+++|+            +
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~   69 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAG----ANIDTC-----SE-DQRTPLMEAAENNHLEAVKYLIKAGA------------L   69 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHTTTC------------C
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcC----CCcCcc-----CC-CCCCHHHHHHHhCCHHHHHHHHhCCC------------C
Confidence            48899999999999999998853    333332     12 48899999999999999999998887            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.++..|.||||+|+.. +..+++++|++.    | .++++.+|..|.||||+|+..|+.+++++|+++.++
T Consensus        70 ~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~----~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  136 (237)
T 3b7b_A           70 VDPKDAEGSTCLHLAAKK-GHYEVVQYLLSN----G-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD  136 (237)
T ss_dssp             CCCCCTTSCCHHHHHHHT-TCHHHHHHHHTT----T-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHHc-CCHHHHHHHHhC----C-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            566666777777777763 566677777765    2 145666777777777777777777777777766544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.73  E-value=1.1e-17  Score=156.51  Aligned_cols=106  Identities=21%  Similarity=0.160  Sum_probs=94.9

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|+||||+|+..|+.++|++||++|+            ++|.+|..|.||||+|+.. ++.+++++|+++      ++++
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   69 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGS------------DPNVKDHAGWTPLHEACNH-GHLKVVELLLQH------KALV   69 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTC------------CSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------------CCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCcc
Confidence            59999999999999999999999998            5788999999999999985 788999999997      5679


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      +.+|..|.||||+|+..|+.+++++|+++.++.    .+|..++++...
T Consensus        70 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            999999999999999999999999999987665    367777777654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.73  E-value=3.2e-17  Score=163.12  Aligned_cols=125  Identities=17%  Similarity=0.157  Sum_probs=91.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+.+|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.+++++|+++|+            +
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~~~~-----~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~------------~  134 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYG----ADPSLI-----DG-EGCSCIHLAAQFGHTSIVAYLIAKGQ------------D  134 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CChhHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCHHHHHHHHHhcCC------------C
Confidence            48999999999999999999853    333322     22 58899999999999999999999988            3


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~-~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.++..|.||||+|+..++..+++++|+..      +++++..|. .|.||||+|+..|+.+++++|+++.++
T Consensus       135 ~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF------NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT------TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             ccccCCCCCcHHHHHHHhCChHHHHHHHHhc------CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5666667777777777554445666777665      345666665 677777777777777777777766544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.73  E-value=2.5e-18  Score=185.33  Aligned_cols=143  Identities=16%  Similarity=0.032  Sum_probs=114.3

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCc
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC---RRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs---~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      ++|||+|+.+|+.++|++||+.+    ++++..     +. .|+||||+|+..|+   .++|+.||+++..         
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~G----ad~n~~-----d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~---------  192 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHG----SNRLYG-----DN-MGESCLVKAVKSVNNYDSGTFEALLDYLYP---------  192 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTBC-----CT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---------
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----CC-CCCCHHHHHHHhcccccHHHHHHHHHhhhc---------
Confidence            49999999999999999999964    444433     22 59999999999999   7899999998741         


Q ss_pred             CCCCCCCCCCCChHHHHHHhc---CCcHHHHHHHhCCCCCC----------------CCC--------------------
Q 001315          924 IFPPNLAGPGGITPLHLAACT---SDSDDIIDALTNDPQEI----------------GPS--------------------  964 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~---~g~eeVVeLLL~~p~~i----------------Gag--------------------  964 (1102)
                        ++|.+|..|+||||+|+..   .++.+++++|++....+                |+.                    
T Consensus       193 --~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~  270 (327)
T 1sw6_A          193 --CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  270 (327)
T ss_dssp             --GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             --cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHH
Confidence              4789999999999999972   37788999998641000                000                    


Q ss_pred             ---CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          965 ---SWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       965 ---A~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                         .++|.+|.+|.||||+|+.+|+.++|++|+++.++.    .+|..+|.+.
T Consensus       271 Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence               048999999999999999999999999999997765    3677777764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.72  E-value=2.6e-17  Score=183.84  Aligned_cols=126  Identities=15%  Similarity=0.083  Sum_probs=109.4

Q ss_pred             hhHHHHHHhc-CcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          847 KFLLVFSVDR-GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       847 ktLL~FAadr-GwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      .++||+|+.. |..++++.||+.+    ++++....    ...|.||||+||..|+.++|++||++|+            
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~G----advn~~~~----~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga------------  259 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHG----ADVNWVNG----GQDNATPLIQATAANSLLACEFLLQNGA------------  259 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTT----CCTTCCCT----TTTCCCHHHHHHHTTCHHHHHHHHHTTC------------
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcC----CCCCcccc----ccCCCCHHHHHHHCCCHHHHHHHHHcCC------------
Confidence            3699999999 9999999999854    34443310    1358999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++|.+|..|.||||+|+.. ++.++|++|+++      +|+++++|.+|.||||+|+..|+.+++++|+.....
T Consensus       260 dvn~~d~~G~TpLh~A~~~-g~~~~v~~LL~~------Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          260 NVNQADSAGRGPLHHATIL-GHTGLACLFLKR------GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CCCCCCCCCCCHHHHHHHc-CcHHHHHHHHHC------cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            5799999999999999986 788999999998      578999999999999999999999999999877543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.71  E-value=3.1e-17  Score=172.96  Aligned_cols=134  Identities=16%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++||++|++            
T Consensus        93 ~t~L~~A~~~g~~~~v~~Ll~~g----a~~~~~-----~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------  150 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVKILLKHG----AQVNGV-----TA-DWHTPLFNACVSGSWDCVNLLLQHGAS------------  150 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCSSCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHTTCC------------
T ss_pred             CCHHHHHHHCCcHHHHHHHHHCC----CCCCCC-----CC-CCCCHHHHHHHcCHHHHHHHHHHCCCC------------
Confidence            48999999999999999999963    333432     22 589999999999999999999999983            


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc---cCC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR---RNG 1003 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~---~~~ 1003 (1102)
                      ++. +..|.||||+|+.. |..+++++|++.      +++++.+|.+|.||||+|+..|+.+++++|+++.++.   ..|
T Consensus       151 ~~~-~~~g~t~L~~A~~~-g~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g  222 (285)
T 3d9h_A          151 VQP-ESDLASPIHEAARR-GHVECVNSLIAY------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ  222 (285)
T ss_dssp             SSC-SCTTSCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT
T ss_pred             CCC-CCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC
Confidence            343 34599999999985 778899999987      5679999999999999999999999999999986654   245


Q ss_pred             ceeeeeC
Q 001315         1004 QVTIPVG 1010 (1102)
Q Consensus      1004 ~v~l~i~ 1010 (1102)
                      ..+|.+.
T Consensus       223 ~t~L~~A  229 (285)
T 3d9h_A          223 DSPLHAV  229 (285)
T ss_dssp             BCHHHHH
T ss_pred             CCHHHHH
Confidence            5554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.71  E-value=2.7e-17  Score=181.12  Aligned_cols=65  Identities=28%  Similarity=0.358  Sum_probs=32.9

Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      +|.++..|.||||+||.. |+.++|+.|++.      +++++..|..|.||||+|+..|+.+++++|+++.+
T Consensus       106 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  170 (437)
T 1n11_A          106 PNLATTAGHTPLHIAARE-GHVETVLALLEK------EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  170 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHHc-CCHHHHHHHHhC------CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            444555555555555543 444455555544      23344555555555555555555555555555433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.71  E-value=4e-18  Score=171.81  Aligned_cols=136  Identities=8%  Similarity=-0.012  Sum_probs=110.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCc
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCR----RMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~----~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      ..|+.|+..|..+.++.|+...    +  +.     .+...|+||||+|+.+|+.    +||++||++|+          
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~----~--~~-----~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga----------   66 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG----Y--ED-----KESVLKSNILYDVLRNNNDEARYKISMFLINKGA----------   66 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS----S--SC-----HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC----------
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC----c--cc-----ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC----------
Confidence            5688999999999999888742    1  21     2323599999999999985    59999999999          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCc-----HHHHHHHhCCCCCCCCCCCCcCCCCCCC-CHHHHHHHcC-----CHHHHHH
Q 001315          924 IFPPNLAGPGGITPLHLAACTSDS-----DDIIDALTNDPQEIGPSSWNSILDASGH-SPYSYALMKN-----NHAYNKL  992 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~~g~-----eeVVeLLL~~p~~iGagA~vNarD~~G~-TPLHyAa~~G-----~~eiVeL  992 (1102)
                        +||++|..|+||||+|+..+..     .+++++|+++      ||++|++|..|. ||||||+..|     +.+++++
T Consensus        67 --dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~------Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           67 --DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK------GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             --CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT------TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             --CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC------CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence              5899999999999999986421     4689999998      678999999999 9999999954     4569999


Q ss_pred             HHH-hhccc----cCCceeeeeCcc
Q 001315          993 VAR-KLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       993 Ll~-Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      |++ +.++.    ..|..+|++...
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHH
Confidence            998 76665    357777777544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.70  E-value=2e-17  Score=150.26  Aligned_cols=94  Identities=27%  Similarity=0.226  Sum_probs=87.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+||..|+.++|++||++|+            ++|.+|..|.||||+|+.. +..+++++|++.      ++++
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   68 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGA------------DVNARSKDGNTPLHLAAKN-GHAEIVKLLLAK------GADV   68 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTC------------CSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------------CCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc------CCCC
Confidence            58999999999999999999999998            5788999999999999985 788999999997      5679


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      +.+|..|.||||+|+..|+.+++++|+++.++-
T Consensus        69 ~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  101 (115)
T 2l6b_A           69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV  101 (115)
T ss_dssp             TCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999987764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.70  E-value=1.2e-17  Score=156.69  Aligned_cols=93  Identities=16%  Similarity=0.032  Sum_probs=86.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+|++.|+.++|++||++|+            ++|.+|..|+||||+|+.  ++.+++++|+++      ++++
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~------g~~~   70 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGA------------DPNALNRFGRRPIQVMMM--GSAQVAELLLLH------GAEP   70 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTC------------CTTCCCTTCCTTTTTSTT--SCHHHHHHHHHH------TCCS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCC------------CcCCcCCCCCCHHHHHHc--CCHHHHHHHHHC------CCCC
Confidence            58999999999999999999999998            578999999999999998  788899999997      5689


Q ss_pred             cCCCCC-CCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          968 SILDAS-GHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       968 NarD~~-G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |.+|.. |.||||+|+..|+.+++++|+++.++.
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  104 (136)
T 1d9s_A           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARL  104 (136)
T ss_dssp             SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999 999999999999999999999986653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.70  E-value=3.1e-17  Score=153.92  Aligned_cols=103  Identities=20%  Similarity=0.227  Sum_probs=90.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .+.|+||+||+.|+.++|++||++|+            ++|.+|..|.||||+|+.. ++.+++++|+++      ++++
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~------g~~~   73 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGA------------DVNAKDEYGLTPLYLATAH-GHLEIVEVLLKN------GADV   73 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCC------------CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            47899999999999999999999998            5788999999999999986 778899999997      5689


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeee
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPV 1009 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i 1009 (1102)
                      |.+|.+|.||||+|+..|+.+++++|+++.++.    .+|+.+|.+
T Consensus        74 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~  119 (136)
T 2jab_A           74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI  119 (136)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHH
Confidence            999999999999999999999999999986653    234444444

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.69  E-value=3.7e-17  Score=172.24  Aligned_cols=148  Identities=16%  Similarity=0.090  Sum_probs=113.0

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCC----
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSL-TSSNDTPQK----  922 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GA-d~~~gsa~~----  922 (1102)
                      .+++.|+.+|+.+.++.|+..+.+..+  +..     +. .|+||||+||..|+.++|++||++|+ +.......+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~--n~~-----d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVV--NIA-----DS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI  149 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHH--TCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcC--cCC-----CC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHH
Confidence            566788888888888888887655222  222     22 59999999999999999999999998 431111100    


Q ss_pred             ----------------------cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH
Q 001315          923 ----------------------YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       923 ----------------------ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy  980 (1102)
                                            +..+++..+..|+||||+||.. |..++|++|++.      +|++|++|.+|.||||+
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~------gad~n~~d~~G~TpLh~  222 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLAC------EADVNVQDDDGSTALMC  222 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhC------CCCCCCCCCCCCCHHHH
Confidence                                  0125667788999999999985 788999999997      57899999999999999


Q ss_pred             HHHcCCHHHHHHHHH-hhccc----cCCceeeeeC
Q 001315          981 ALMKNNHAYNKLVAR-KLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~-Kia~~----~~~~v~l~i~ 1010 (1102)
                      |+..|+.++|++|++ +.++.    .+|..+|.+.
T Consensus       223 A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A  257 (276)
T 4hbd_A          223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA  257 (276)
T ss_dssp             HHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence            999999999999998 55443    2455555543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.69  E-value=2.5e-17  Score=174.04  Aligned_cols=122  Identities=11%  Similarity=0.010  Sum_probs=62.2

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcC-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWE-IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g-~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +|||+|+.+|+.+++++|++.+++    ++..     +. .| .||||+|+..|+.++|++||++|++            
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~-----~~-~g~~t~L~~A~~~~~~~~v~~Ll~~g~~------------  154 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWR----LMFY-----GK-TGWKTSFYHAVMLNDVSIVSYFLSEIPS------------  154 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGG----GGGC-----SS-SGGGSHHHHHHHTTCHHHHHHHHTTSCT------------
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC----CCcc-----CC-CCCCCHHHHHHHcCCHHHHHHHHhCCCc------------
Confidence            455555555555555555554222    1111     11 23 4555555555555555555555542            


Q ss_pred             CCCCCC-CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCH-HHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNLAGP-GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSP-YSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pnakd~-~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TP-LHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                        ..+. .|.||||+|+.. |+.+++++|+++      +|++|.+|..|.|| ||+|+..|+.+++++|++++++.
T Consensus       155 --~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~------gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~  221 (285)
T 3kea_A          155 --TFDLAILLSCIHITIKN-GHVDMMILLLDY------MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI  221 (285)
T ss_dssp             --TCCCSTHHHHHHHHHHT-TCHHHHHHHHHH------HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred             --cccccCCccHHHHHHHc-ChHHHHHHHHHc------CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence              1111 555666666553 455566666654      34556666666665 66666666666666666555443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=7e-17  Score=176.82  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=111.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHH----HHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDI----LVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~----L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      +++||+|+.+|+.++++.|+..    +...+++++..     +. .|.||||+|+..|+.+||++||++|+         
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-----d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga---------  190 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-----DC-DENTPLMLAVLARRRRLVAYLMKAGA---------  190 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTC---------
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-----CC-CCCCHHHHHHHcChHHHHHHHHHCCC---------
Confidence            4999999999999999998742    22344555543     22 59999999999999999999999998         


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC---CHHHHHHHHHhhcc
Q 001315          923 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN---NHAYNKLVARKLAD  999 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G---~~eiVeLLl~Kia~  999 (1102)
                         +++.++..|.||||+|+.. |+.+++++|++++.   .+++++.+|.+|.||||+|+..|   +.+++++|+++.++
T Consensus       191 ---~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~---~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~  263 (373)
T 2fo1_E          191 ---DPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTK---LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK  263 (373)
T ss_dssp             ---CSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHH---HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC
T ss_pred             ---CCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCc---cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC
Confidence               5789999999999999985 78899999998720   12678999999999999999998   89999999999766


Q ss_pred             c
Q 001315         1000 R 1000 (1102)
Q Consensus      1000 ~ 1000 (1102)
                      -
T Consensus       264 ~  264 (373)
T 2fo1_E          264 V  264 (373)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=1e-16  Score=146.56  Aligned_cols=87  Identities=18%  Similarity=0.194  Sum_probs=81.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.|+||+|+..|+.++|++||++|+            ++|.+|..|.||||+||.. ++.+++++|+++      ++++
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~------ga~~   83 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGA------------DVAAKDKNGSTPLHLAARN-GHLEVVKLLLEA------GADV   83 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCC------------CCCccCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCc
Confidence            58899999999999999999999998            5788999999999999985 788999999997      5689


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      |.+|..|.||||+|+..|+.+++++|
T Consensus        84 ~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           84 XAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999987

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=156.63  Aligned_cols=124  Identities=18%  Similarity=0.145  Sum_probs=101.9

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++|++|+..|..++++.|++.+    .+++..     + ..|.||||+|++.|+.++|++|+++|++            +
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g----~~~~~~-----~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~------------~   68 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAG----YDVRQP-----D-KENVTLLHWAAINNRIDLVKYYISKGAI------------V   68 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTT----CCTTCC-----C-TTSCCHHHHHHHTTCHHHHHHHHHTTCC------------T
T ss_pred             hHHHHHHHcCChHHHHHHHHcC----CCcCCC-----C-CCCCCHHHHHHHhCCHHHHHHHHHcCCc------------c
Confidence            7899999999999999999853    333433     2 2588999999999999999999999883            3


Q ss_pred             C-CCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          928 N-LAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       928 n-akd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      + ..+..|.||||+|+.. +..+++++|++.      +++++.+|..|.||||+|+..|+.+++++|+++..+-
T Consensus        69 ~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  135 (240)
T 3eu9_A           69 DQLGGDLNSTPLHWATRQ-GHLSMVVQLMKY------GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV  135 (240)
T ss_dssp             TCCBTTTTBCHHHHHHHH-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhcCCcCCChhHHHHHc-CCHHHHHHHHHc------CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence            3 3345589999999985 678899999987      5678899999999999999999999999999885543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.67  E-value=1.8e-16  Score=143.36  Aligned_cols=93  Identities=25%  Similarity=0.236  Sum_probs=85.4

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|+||||+|++.|+.++|++|+++|+            +++.++..|.||||+|+.. +..+++++|++.      ++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~------------~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~------g~~~   61 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA------------DVNAKDKNGRTPLHLAARN-GHLEVVKLLLEA------GADV   61 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC------------CCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHc------CCCC
Confidence            37899999999999999999999998            4788899999999999985 778899999987      5678


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      +.+|..|.||||+|+..|+.+++++|+++.++
T Consensus        62 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~   93 (126)
T 1n0r_A           62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD   93 (126)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence            99999999999999999999999999998655

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.67  E-value=1.6e-16  Score=160.13  Aligned_cols=107  Identities=17%  Similarity=0.083  Sum_probs=95.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+|+..|+.++|++||++|+            ++|.+|..|+||||+||.. ++.++|++|++.+     ++++
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~-----g~~~  133 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRV------------GVNGLDKAGSTALYWACHG-GHKDIVEMLFTQP-----NIEL  133 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTC------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTST-----TCCC
T ss_pred             ccccccccccccCcHHHHHHHHhCCC------------CccccCCCCCCHHHHHHHc-CCHHHHHHHHcCC-----CCCc
Confidence            58899999999999999999999998            5789999999999999985 7889999999862     5679


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      |.+|..|.||||+|+..|+.+++++|+++.++.    .+|+.+|.+...
T Consensus       134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence            999999999999999999999999999997765    367777777654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.66  E-value=1.8e-16  Score=163.53  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=93.7

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .+.||||+|+..|+.++|++||++|+            ++|.+|..|+||||+||.. |..++|++|++.      ++++
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~~   80 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMN------------DPSQPNEEGITALHNAICG-ANYSIVDFLITA------GANV   80 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSS------------CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCC------------CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCC
Confidence            57899999999999999999999998            5789999999999999985 788999999997      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc-----cCCceeeeeC
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR-----RNGQVTIPVG 1010 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~-----~~~~v~l~i~ 1010 (1102)
                      |.+|..|.||||+|+..|+.+++++|+++.++-     ..|..+|.+.
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            999999999999999999999999999986654     2577777775

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.65  E-value=2.3e-16  Score=155.36  Aligned_cols=105  Identities=15%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+|++.|+.++|++||+ |+            ++|.+|..|+||||+|+.. ++.+++++|++.      ++++
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~------------~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~------ga~~  102 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DR------------DVDAVDENGRTALLFVAGL-GSDKCVRLLAEA------GADL  102 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TS------------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cC------------CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHc------CCCC
Confidence            48899999999999999999999 77            5789999999999999996 788899999997      5789


Q ss_pred             cCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          968 SILD-ASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       968 NarD-~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                      |.+| .+|.||||+|+..|+.+++++|+++.++.    .+|+.+|.+...
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            9999 88999999999999999999999987664    256666666543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.63  E-value=3.8e-16  Score=149.81  Aligned_cols=103  Identities=16%  Similarity=0.098  Sum_probs=90.2

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+|++.|+.++|++||++|+            ++|.+|..|.||||+|+  .++.+++++|++.      ++++
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~------------~~~~~~~~g~t~L~~A~--~~~~~~v~~Ll~~------g~~~   70 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGA------------NPNAPNSYGRRPIQVMM--MGSARVAELLLLH------GAEP   70 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTC------------CTTCCCSSSCCTTTSSC--TTCHHHHHHHHTT------TCCC
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCC------------CCCCCCCCCCCHHHHHH--cCCHHHHHHHHHc------CCCC
Confidence            58999999999999999999999998            57899999999999984  5788999999997      5789


Q ss_pred             cCCCCCCCC-HHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          968 SILDASGHS-PYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       968 NarD~~G~T-PLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      |.+|..|.| |||+|+..|+.+++++|+++.++-    ..|..+|.+.
T Consensus        71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A  118 (156)
T 1bi7_B           71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA  118 (156)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHH
T ss_pred             CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999 999999999999999999986654    2455555543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.62  E-value=5.3e-16  Score=160.70  Aligned_cols=104  Identities=14%  Similarity=0.041  Sum_probs=92.5

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+|++.|+.++|++||+ |+            ++|.+|..|+||||+||.. |+.++|++|+++      ++++
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~------------~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------ga~~  103 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DR------------DVDAVDENGRTALLFVAGL-GSDKCVRLLAEA------GADL  103 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TC------------CTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CC------------CCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCC
Confidence            48899999999999999999999 87            5789999999999999996 788999999998      5789


Q ss_pred             cCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          968 SILD-ASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       968 NarD-~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      |.+| ..|.||||+|+.+|+.++|++|+++.++.    .+|..+|.+..
T Consensus       104 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            9999 88999999999999999999999997664    35777776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.60  E-value=4.2e-16  Score=168.05  Aligned_cols=124  Identities=13%  Similarity=-0.021  Sum_probs=96.2

Q ss_pred             HHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCC
Q 001315          849 LLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPN  928 (1102)
Q Consensus       849 LL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpn  928 (1102)
                      ++++|+..+..++++.|++.    +++++..     ....|+||||+||..|+.++|++||++|+            ++|
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~----g~dvn~~-----~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga------------d~n  158 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNT----QLNLNIP-----VDEHGNTPLHWLTSIANLELVKHLVKHGS------------NRL  158 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTS----CCCSCSC-----CSTTCCCHHHHHHHTTCHHHHHHHHHTTC------------CTT
T ss_pred             hhHHHHHhhHHHHHHHHHhc----CCCcccc-----cCCCCCcHHHHHHHcCCHHHHHHHHHcCC------------CCC
Confidence            45667766666777777663    4555541     12259999999999999999999999998            589


Q ss_pred             CCCCCCChHHHHHHhcCCc---HHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHhhcc
Q 001315          929 LAGPGGITPLHLAACTSDS---DDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALM----KNNHAYNKLVARKLAD  999 (1102)
Q Consensus       929 akd~~G~TPLHiAA~~~g~---eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~----~G~~eiVeLLl~Kia~  999 (1102)
                      .+|..|+||||+|+.. |+   .++++.|++.    + .++++.+|..|.||||+|+.    .|+.+++++|++++..
T Consensus       159 ~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~----~-~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          159 YGDNMGESCLVKAVKS-VNNYDSGTFEALLDY----L-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             BCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHH----H-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHh-cccccHHHHHHHHHh----h-hccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            9999999999999985 55   3455666654    1 24689999999999999999    9999999999988654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.58  E-value=1.8e-16  Score=177.37  Aligned_cols=129  Identities=11%  Similarity=0.138  Sum_probs=100.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|+.++|+.|++.+.... ..+     .++. .+.||||+|+++|+.++|++||++|++..         .
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~-~~~-----~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~---------~  156 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDE-IVK-----VIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEI---------M  156 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCS-SCC-------CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTH---------H
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHH-HHH-----Hhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCcc---------c
Confidence            599999999999999999998643110 001     1122 37799999999999999999999997310         0


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcC--CCCCCCCHHHHHH-HcCCHHHHHHHHHhhcc
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI--LDASGHSPYSYAL-MKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNa--rD~~G~TPLHyAa-~~G~~eiVeLLl~Kia~  999 (1102)
                      ++..+.+ .||||+||. .|+.+||++|+++      +++++.  +|.+|.||||+|+ .+||.++|++|+++.+.
T Consensus       157 ~~i~~~~-~TpLh~Aa~-~G~~eiv~~Ll~~------ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          157 AMIQAEN-YHAFRLAAE-NGHLHVLNRLCEL------APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHSHHH-HHHHHHHHH-TTCHHHHHHHHHS------CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             cccCCCC-CCHHHHHHH-CCCHHHHHHHHHc------CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            1223333 999999998 4889999999998      567777  8999999999999 99999999999987543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.56  E-value=2.3e-15  Score=136.71  Aligned_cols=103  Identities=19%  Similarity=0.108  Sum_probs=87.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|..++++.|++..    ++++..     + ..|.||||+|+..|+.++|++||++|+            +
T Consensus        10 ~t~L~~A~~~~~~~~~~~Ll~~g----~~~~~~-----d-~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------~   67 (115)
T 2l6b_A           10 NTPLHNAAKNGHAEEVKKLLSKG----ADVNAR-----S-KDGNTPLHLAAKNGHAEIVKLLLAKGA------------D   67 (115)
T ss_dssp             CCHHHHHHHHTCHHHHHHHTTTT----CCSSCC-----C-SSSCCTTHHHHTTTCHHHHHHHTTTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC----CCCCCc-----C-CCCCCHHHHHHHcCcHHHHHHHHHcCC------------C
Confidence            48999999999999999999853    334433     2 258999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPY  978 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPL  978 (1102)
                      ++.+|..|.||||+|+.. +..+++++|+++      +|++|.+|..|.||-
T Consensus        68 ~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~------ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 VNARSKDGNTPEHLAKKN-GHHEIVKLLDAK------GADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCCCTTCCCTTHHHHTT-TCHHHHHHHHTT------SSSHHHHSCCCC---
T ss_pred             CcccCCCCCCHHHHHHHC-CCHHHHHHHHHc------CCCCCcCCccccccc
Confidence            789999999999999985 788999999998      678999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.54  E-value=1.8e-14  Score=127.03  Aligned_cols=88  Identities=23%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      +++||+|+..|+.++++.|++.+    .+++..     +. .|.||||+|+..|+.++|++||++|+            +
T Consensus         3 ~t~L~~A~~~~~~~~v~~Ll~~g----~~~n~~-----d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga------------~   60 (93)
T 1n0q_A            3 RTPLHLAARNGHLEVVKLLLEAG----ADVNAK-----DK-NGRTPLHLAARNGHLEVVKLLLEAGA------------D   60 (93)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcC----CCCccc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC------------C
Confidence            47999999999999999999953    444433     22 59999999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTND  957 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~  957 (1102)
                      +|.+|..|.||||+|+.. ++.+++++|+++
T Consensus        61 ~~~~d~~g~t~l~~A~~~-~~~~~~~~Ll~~   90 (93)
T 1n0q_A           61 VNAKDKNGRTPLHLAARN-GHLEVVKLLLEA   90 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             CCccCCCCCCHHHHHHHc-CCHHHHHHHHHc
Confidence            789999999999999985 788999999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.53  E-value=3.5e-15  Score=160.86  Aligned_cols=106  Identities=15%  Similarity=0.051  Sum_probs=84.1

Q ss_pred             hhHHHHHHhc---CcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCc
Q 001315          847 KFLLVFSVDR---GCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKY  923 (1102)
Q Consensus       847 ktLL~FAadr---GwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~y  923 (1102)
                      .++||+|+..   |..+++++||+.+    .+++..     + ..|+||||+|+..|+.++|++||++|+          
T Consensus       191 ~t~Lh~A~~~~~~~~~~iv~~Ll~~g----advn~~-----d-~~G~TpLh~A~~~g~~~~v~~Ll~~ga----------  250 (301)
T 2b0o_E          191 ELVLHLAVKVANQASLPLVDFIIQNG----GHLDAK-----A-ADGNTALHYAALYNQPDCLKLLLKGRA----------  250 (301)
T ss_dssp             ECHHHHHHHTCCTTTHHHHHHHHHHS----SCTTCC-----C-TTCCCHHHHHHHTTCHHHHHHHHHTTC----------
T ss_pred             ccHHHHHHHhcccCcHHHHHHHHhcC----CCCCCC-----C-CCCCCHHHHHHHcCCHHHHHHHHHcCC----------
Confidence            4899999986   8999999999974    334433     2 259999999999999999999999998          


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCH
Q 001315          924 IFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNH  987 (1102)
Q Consensus       924 lfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~  987 (1102)
                        ++|++|..|.||||+|+.. ++.+|+++|++.      +++      .|.||||+|+..|+.
T Consensus       251 --d~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~------ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          251 --LVGTVNEAGETALDIARKK-HHKECEELLEQA------QAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             --CCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------HHH------TTSSCCC--------
T ss_pred             --CCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHh------cCC------CCCChhHHHHhcCCc
Confidence              5799999999999999986 788999999987      322      689999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.50  E-value=1.8e-15  Score=169.33  Aligned_cols=120  Identities=9%  Similarity=0.019  Sum_probs=98.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++||+|+.+|+.++|++|++.+++    ...   ..+...+ .||||+|+.+|+.++|++||++|++            
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad----~~~---~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~------------  188 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPT----EIM---AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT------------  188 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTT----THH---HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCC----ccc---cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc------------
Confidence            4799999999999999999996421    000   0111222 8999999999999999999999983            


Q ss_pred             CCC--CCCCCChHHHHHH-hcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          927 PNL--AGPGGITPLHLAA-CTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       927 pna--kd~~G~TPLHiAA-~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      ++.  +|..|.||||+|| . .|+.+||++|+++    |  +       .|.||||+|+.+||.+++++|+++.++.
T Consensus       189 ~~~~~~d~~g~TpL~~Aa~~-~G~~eiv~~Ll~~----g--a-------~~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          189 EATAMIQAENYYAFRWAAVG-RGHHNVINFLLDC----P--V-------MLAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             GHHHHHHHHHHHHHHHHHST-TCCHHHHHHHTTS----H--H-------HHHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             cchhccCCCCCCHHHHHHHH-CCCHHHHHHHHhC----C--C-------ccchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            455  7888999999999 7 5899999999986    2  2       2899999999999999999999997764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.47  E-value=5e-14  Score=157.40  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             cCchHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCC--CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCC
Q 001315          888 WEIQLLNRAVKM-KCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAG--PGGITPLHLAACTSDSDDIIDALTNDPQEIGPS  964 (1102)
Q Consensus       888 ~g~TlLH~AV~~-gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd--~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGag  964 (1102)
                      .+.|+||+|+.. ++.++|++||++|+            ++|..+  ..|.||||+||.. ++.++|++|+++      +
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Ga------------dvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~------G  258 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGA------------DVNWVNGGQDNATPLIQATAA-NSLLACEFLLQN------G  258 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTC------------CTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHT------T
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCC------------CCCccccccCCCCHHHHHHHC-CCHHHHHHHHHc------C
Confidence            466999999999 99999999999998            467777  8999999999985 788999999998      5


Q ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          965 SWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       965 A~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      |++|++|..|.||||+|+..|+.+++++|+++.++.    .+|..+|.+..
T Consensus       259 advn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~  309 (368)
T 3jue_A          259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAM  309 (368)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH
Confidence            789999999999999999999999999999997665    25777777654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.44  E-value=1.7e-13  Score=146.04  Aligned_cols=110  Identities=21%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcC--CcHHHHHHHhCCCCCCCCCCC
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTS--DSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~--g~eeVVeLLL~~p~~iGagA~  966 (1102)
                      ..++||.|+..|+.+.|..|++.|++...      .+.++..|..|.||||+||..+  ++.++|++|+++      +|+
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~------~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~------ga~  197 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTE------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN------SGN  197 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTS------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH------CSC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhh------hccccccccCCCCcchHHHHhcccchHHHHHHHHHC------CCC
Confidence            45899999999999999999999985311      1125777899999999999963  678899999998      578


Q ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          967 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      +|++|.+|.||||+|+..|+.++|++|+++.++.    .+|..+|.+.
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  245 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  245 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHH
Confidence            9999999999999999999999999999987765    2466666554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.44  E-value=9.2e-14  Score=158.92  Aligned_cols=105  Identities=18%  Similarity=0.098  Sum_probs=90.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCC------CCCCChHHHHHHh--cCCcHHHHHHHhCCCCCC
Q 001315          890 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLA------GPGGITPLHLAAC--TSDSDDIIDALTNDPQEI  961 (1102)
Q Consensus       890 ~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnak------d~~G~TPLHiAA~--~~g~eeVVeLLL~~p~~i  961 (1102)
                      .+.||.|+..|+.++|+.||++|++            +|..      |..|.||||+|+.  ..|+.++|++|+++    
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~------------~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~----  196 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQD------------FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN----  196 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCC------------SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH----
T ss_pred             HHHHHHHHhccCHHHHHHHHhhccc------------ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc----
Confidence            3789999999999999999999984            4444      8899999999954  24788999999998    


Q ss_pred             CCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCcc
Q 001315          962 GPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGVE 1012 (1102)
Q Consensus       962 GagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~~ 1012 (1102)
                        ||++|++|.+|.||||+|+..|+.++|++|++++++-    .+|..+|.+...
T Consensus       197 --ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  249 (497)
T 3lvq_E          197 --GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK  249 (497)
T ss_dssp             --SCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred             --CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence              5789999999999999999999999999999997775    368888877643

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.36  E-value=2.1e-12  Score=117.93  Aligned_cols=87  Identities=14%  Similarity=0.088  Sum_probs=75.1

Q ss_pred             hhhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          845 RFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       845 RfktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      ...++||+|+.+|+.++++.|++..    ++++..     +. .|.||||+||..|+.++|++||++|+           
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g----~~i~~~-----d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga-----------   81 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANG----ADVAAK-----DK-NGSTPLHLAARNGHLEVVKLLLEAGA-----------   81 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcC----CCCCcc-----CC-CCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence            4569999999999999999999853    344433     22 59999999999999999999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHH
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDAL  954 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLL  954 (1102)
                       ++|.+|..|+||||+|+.. +..+++++|
T Consensus        82 -~~~~~d~~g~tpl~~A~~~-~~~~~~~~L  109 (110)
T 2zgd_A           82 -DVXAQDKFGKTAFDISIDN-GNEDLAEIL  109 (110)
T ss_dssp             -CTTCCCTTSCCHHHHHHHH-TCHHHHHHH
T ss_pred             -CccccccCCCcHHHHHHHc-CCHHHHHHh
Confidence             5789999999999999986 778899987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1102
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	5e-46
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	8e-46
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	1e-32

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  157 bits (398), Expect = 5e-46
 Identities = 52/80 (65%), Positives = 60/80 (75%)

Query: 171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGK 230
            +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH L EFDE K
Sbjct: 2   RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAK 61

Query: 231 RSCRRRLAGHNRRRRKTQPE 250
           RSCRRRLAGHN RRRK+  E
Sbjct: 62  RSCRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  156 bits (397), Expect = 8e-46
 Identities = 36/80 (45%), Positives = 55/80 (68%)

Query: 171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGK 230
             CQV +C+ D+S  K YH+RH+VC   + ++  ++  + +R+CQQC +FH L +FDEGK
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 231 RSCRRRLAGHNRRRRKTQPE 250
           RSCRR+L  HN RR++   +
Sbjct: 62  RSCRRKLERHNNRRKRKPVD 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (296), Expect = 1e-32
 Identities = 44/56 (78%), Positives = 46/56 (82%)

Query: 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
            CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1102
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.78
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.75
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.75
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.74
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.74
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.73
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.72
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.66
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.66
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.65
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.64
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.61
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.6
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.6
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.6
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.58
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.54
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.53
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.47
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.46
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.41
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.4
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.36
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.17

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-37  Score=277.66  Aligned_cols=80  Identities=65%  Similarity=1.152  Sum_probs=78.3

Q ss_pred             CCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCccCccchHHHHHhhHHhhhccCCCc
Q 001315          171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPE  250 (1102)
Q Consensus       171 ~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~RRrk~~~~  250 (1102)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.4e-38  Score=281.03  Aligned_cols=83  Identities=43%  Similarity=0.900  Sum_probs=80.8

Q ss_pred             CCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCccCccchHHHHHhhHHhhhccCCCc
Q 001315          171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPE  250 (1102)
Q Consensus       171 ~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd~~krSCr~~L~~hn~RRrk~~~~  250 (1102)
                      ++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 001315          251 DIT  253 (1102)
Q Consensus       251 ~~~  253 (1102)
                      +.+
T Consensus        82 ~~g   84 (86)
T d1ul5a_          82 KGG   84 (86)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            764

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=6.7e-29  Score=208.74  Aligned_cols=57  Identities=77%  Similarity=1.282  Sum_probs=55.8

Q ss_pred             CCcccCCChhhhhcccccccccccchhhcCCceeeeCCccchhhhhhccCCCCCCcc
Q 001315          171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD  227 (1102)
Q Consensus       171 ~~CqV~gC~~dL~~~k~Y~~R~rvCe~H~ka~~v~~~G~~~RFCQQC~rfH~L~eFd  227 (1102)
                      .+||||||++||+.+|+|||||||||.|+||++|+++|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            369999999999999999999999999999999999999999999999999999998

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7.1e-20  Score=178.80  Aligned_cols=138  Identities=19%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCcC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKM---KCRRMVDLLIHYSLTSSNDTPQKYI  924 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~---gs~~IVeLLL~~GAd~~~gsa~~yl  924 (1102)
                      ..|+-|+..+....+..++..+    +++....+.......|+||||+|++.   ++.+||++||++|+           
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----------   72 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADG----VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----------   72 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT----CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----------
T ss_pred             HHHHHHHHhCCHHHHHHHHHcC----CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-----------
Confidence            3466788888776666666543    33332211111122489999999974   78899999999998           


Q ss_pred             CCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccccCCc
Q 001315          925 FPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADRRNGQ 1004 (1102)
Q Consensus       925 fdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~~~~ 1004 (1102)
                       ++|.+|..|.||||+||.. |+.+++++|+++      +|++|++|.+|.||||||+.+|+.+++++|++..+.+.+.+
T Consensus        73 -din~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~~  144 (154)
T d1dcqa1          73 -NLDKQTGKGSTALHYCCLT-DNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH  144 (154)
T ss_dssp             -CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCSS
T ss_pred             -Chhhhhhhhcccccccccc-cccccccccccc------CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCcc
Confidence             5799999999999999985 788999999998      57899999999999999999999999999999988876665


Q ss_pred             eeee
Q 001315         1005 VTIP 1008 (1102)
Q Consensus      1005 v~l~ 1008 (1102)
                      ..++
T Consensus       145 ~~~~  148 (154)
T d1dcqa1         145 VHVE  148 (154)
T ss_dssp             CCCC
T ss_pred             hhhh
Confidence            5554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=8.3e-20  Score=184.05  Aligned_cols=136  Identities=17%  Similarity=0.194  Sum_probs=104.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHH----hccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC----CC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILV----EGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS----ND  918 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~----~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~----~g  918 (1102)
                      +++||+|+..|+.++|+.||....    ..+++++..     +. .|.||||+|++.|+.++|++||++|++..    +|
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-----d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g  107 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-----DC-DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE  107 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-----CC-CCCeeeccccccccccccccccccccccccccccc
Confidence            399999999999999999987532    234555543     23 69999999999999999999999998631    01


Q ss_pred             CC------------------------------------------------------------------------------
Q 001315          919 TP------------------------------------------------------------------------------  920 (1102)
Q Consensus       919 sa------------------------------------------------------------------------------  920 (1102)
                      ..                                                                              
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            00                                                                              


Q ss_pred             ---------C-----------CcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHH
Q 001315          921 ---------Q-----------KYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSY  980 (1102)
Q Consensus       921 ---------~-----------~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHy  980 (1102)
                               .           ....+++.+|..|+||||+|+.. |..++|++|+++      ||++|++|.+|.|||||
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~-g~~~iv~~Ll~~------gadin~~d~~G~T~L~~  260 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQ------GASVEAVDATDHTARQL  260 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHT------TCCSSCCCSSSCCHHHH
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHc-CCHHHHHHHHHC------cCCCCCcCCCCCCHHHH
Confidence                     0           00124567788888888888875 677888888887      56788888888888888


Q ss_pred             HHHcCCHHHHHHHHH
Q 001315          981 ALMKNNHAYNKLVAR  995 (1102)
Q Consensus       981 Aa~~G~~eiVeLLl~  995 (1102)
                      |+++||.++|++|++
T Consensus       261 A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         261 AQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHTTCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHH
Confidence            888888888888875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.5e-19  Score=167.56  Aligned_cols=129  Identities=11%  Similarity=0.072  Sum_probs=106.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCC----CC--
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND----TP--  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~g----sa--  920 (1102)
                      .++|+.|+..|+.++|+.||+.+++    ++ .     +. .|.||||+|+..++.++|+.++.........    ..  
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~----~~-~-----~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP----FT-T-----DW-LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC----CC-C-----CT-TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC----cc-c-----cc-CCCcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999997532    22 1     22 5899999999999999999999887632111    00  


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC
Q 001315          921 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  985 (1102)
Q Consensus       921 ---------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G  985 (1102)
                                     ..+..+++.+|..|+||||+|+.. |+.++|++|++.      +|++|.+|.+|.||||+|+.+|
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~-g~~~iv~~ll~~------gad~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKY------GADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccceeeecccccCCccccccccCchHHHhhhhc-chhheeeecccc------ccCCcccCCCCCCHHHHHHHcC
Confidence                           012347788999999999999985 788999999998      5789999999999999999999


Q ss_pred             CHHHHHHH
Q 001315          986 NHAYNKLV  993 (1102)
Q Consensus       986 ~~eiVeLL  993 (1102)
                      |.+++++|
T Consensus       145 ~~eiv~lL  152 (153)
T d1awcb_         145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHhC
Confidence            99999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-20  Score=172.74  Aligned_cols=118  Identities=21%  Similarity=0.229  Sum_probs=102.3

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ++||+|+.+|+.++|+.||+.+    ++++..      ...|.|+||+|+ .|+.+||++||++|+            ++
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~g----ad~n~~------~~~g~t~l~~a~-~g~~~~v~~Ll~~ga------------~~   61 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAG----ANPNAP------NSYGRRPIQVMM-MGSARVAELLLLHGA------------EP   61 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTT----CCTTCC------CSSSCCTTTSSC-TTCHHHHHHHHTTTC------------CC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcC----Cccccc------cccccccccccc-ccccccccccccccc------------cc
Confidence            7899999999999999999854    444433      225899999775 799999999999998            57


Q ss_pred             CCCCCCCC-hHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001315          928 NLAGPGGI-TPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  995 (1102)
Q Consensus       928 nakd~~G~-TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~  995 (1102)
                      |.++..|. ||||+|+.. |+.++|++|++.      ++++|.+|.+|+||||+|+++|+.+++++|+.
T Consensus        62 ~~~~~~~~~~~L~~A~~~-g~~~~v~~Ll~~------ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          62 NCADPATLTRPVHDAARE-GFLDTLVVLHRA------GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCCTTTCCCHHHHHHHH-TCHHHHHHHHHH------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-cccccccccccc------ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888776 699999996 788999999997      57899999999999999999999999999974

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.4e-20  Score=174.17  Aligned_cols=106  Identities=13%  Similarity=0.058  Sum_probs=89.8

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      +||++|+.+|+.++|+.|++.+    ++++..     + ..|+||||+|+..|+.+++++|+++|+            ++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g----~d~n~~-----~-~~g~t~lh~A~~~~~~~~~~~ll~~g~------------di   61 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKG----EDVNRT-----L-EGGRKPLHYAADCGQLEILEFLLLKGA------------DI   61 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTT----CCCCCC-----S-SSSCCTTHHHHHHSTTTHHHHHHHSSC------------TT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhh----hccccc-----c-ccccccccccccccccccccccccccc------------ee
Confidence            6899999999999999999853    444433     2 258999999999999999999999988            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL  982 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa  982 (1102)
                      |.+|..|+||||+|+.. ++.++|++|+++      ||++|.+|.+|.||||+|.
T Consensus        62 n~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~------Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          62 NAPDKHHITPLLSAVYE-GHVSCVKLLLSK------GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCSSSCSCHHHHHHTT-TCCHHHHHHHTT------CCCSSSSSSSTCCCCCTCS
T ss_pred             eecccccccchhhhhhc-Cchhhhhhhhcc------cccceeeCCCCCCHHHHHh
Confidence            88999999999999985 677899999987      5789999999999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=5e-19  Score=177.51  Aligned_cols=96  Identities=24%  Similarity=0.209  Sum_probs=86.5

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.||||+||+.++.++|++||+++++.           .+.++..|.||||+|+.. +..++|++|+++      +|++
T Consensus       157 ~g~TpLh~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~TpL~~A~~~-~~~~~v~~Ll~~------gadi  218 (255)
T d1oy3d_         157 DGHTPLHVAVIHKDAEMVRLLRDAGADL-----------NKPEPTCGRTPLHLAVEA-QAASVLELLLKA------GADP  218 (255)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCT-----------TCCCTTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             cCcccccccccccccccccchhcccccc-----------cccccccccccccccccc-cHHHHHHHHHHC------CCCC
Confidence            4789999999999999999999999842           235678899999999985 778899999998      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcccc
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADRR 1001 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~~ 1001 (1102)
                      |.+|.+|.||||+|+.+|+.+++++|++++|+..
T Consensus       219 n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-19  Score=168.27  Aligned_cols=121  Identities=19%  Similarity=0.151  Sum_probs=103.5

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      .+|+.|+..|+.++|+.|++.+    .+++..     +. .|+||||+||..|+.+++++||++|+            ++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g----~d~n~~-----d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~------------~~   60 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV----DDPSLP-----ND-EGITALHNAVCAGHTEIVKFLVQFGV------------NV   60 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT----SSCCCC-----CT-TSCCHHHHHHHHTCHHHHHHHHHHTC------------CT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC----CCcccc-----cc-cccccccccccccccccccccccccc------------cc
Confidence            5899999999999999999864    344433     22 59999999999999999999999998            57


Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCC-CCCCHHHHH--HHcCCHHHHHHHHHhh
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDA-SGHSPYSYA--LMKNNHAYNKLVARKL  997 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~-~G~TPLHyA--a~~G~~eiVeLLl~Ki  997 (1102)
                      |.+|.+|+||||+|+.+ |+.++|++|+++      ||++|++|. +|.||+++|  +.+||.+++++|+..-
T Consensus        61 ~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~------ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          61 NAADSDGWTPLHCAASC-NNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ccccccCcccccccchh-hHHHHHHHHHHc------CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            89999999999999985 788999999998      578898875 599998776  5789999999998653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2e-18  Score=164.10  Aligned_cols=132  Identities=18%  Similarity=0.153  Sum_probs=94.2

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCC----CC--
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSND----TP--  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~g----sa--  920 (1102)
                      ...|+.|+.+|+.++|+.||+.   +..+++..     +. .|+||||+|+. |+.++|+.||+++++....    ..  
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~---~~~~~n~~-----d~-~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l   72 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHR---ELVHPDAL-----NR-FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT---TCCCTTCC-----CT-TSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHh---CCCCCCcc-----CC-CCCcccccccc-ccccccccccccccccccccccccccc
Confidence            3557777777777777777763   22333322     12 46777776653 6677777777776642111    00  


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC
Q 001315          921 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  985 (1102)
Q Consensus       921 ---------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G  985 (1102)
                                     ..+..++|.+|..|.||||+|+.. |..+++++|+.       +++++.+|.+|+||||||+++|
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~-~~~~i~~~L~~-------~~~~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAA-------ESDLHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHSC
T ss_pred             ccccccccccccccccccccccccccCCCCeeecccccc-ccccccccccc-------cccccccCCCCCCHHHHHHHcC
Confidence                           001236889999999999999985 77889999885       4678999999999999999999


Q ss_pred             CHHHHHHHHHh
Q 001315          986 NHAYNKLVARK  996 (1102)
Q Consensus       986 ~~eiVeLLl~K  996 (1102)
                      +.+++++|+++
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=162.43  Aligned_cols=134  Identities=14%  Similarity=0.125  Sum_probs=108.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC----C--
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDT----P--  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gs----a--  920 (1102)
                      .++||+|+.+|..++|+.||+.+    ++++..     +. .|+||||+|+ .|+.+++++||++|++.....    .  
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~g----~d~n~~-----d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l   70 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQNN----VNVNAQ-----NG-FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVI   70 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSC----CCTTCC-----CT-TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHCC----CCcCcc-----CC-cccccccccc-cccccccccccccccccccccccCcccc
Confidence            47999999999999999999953    444433     22 5999999886 789999999999998642111    0  


Q ss_pred             ---------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcC
Q 001315          921 ---------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKN  985 (1102)
Q Consensus       921 ---------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G  985 (1102)
                                     ..+..+++..+..|.||||+|+.. +..+++++|++++     +.+++.+|.+|.||||+|++.|
T Consensus        71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~-----~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          71 HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHT-----ASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHS-----CCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-----cccccccCCCCCCHHHHHHHcC
Confidence                           011346788999999999999985 6778999999872     2468999999999999999999


Q ss_pred             CHHHHHHHHHhh
Q 001315          986 NHAYNKLVARKL  997 (1102)
Q Consensus       986 ~~eiVeLLl~Ki  997 (1102)
                      |.+++++|++++
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.6e-18  Score=169.55  Aligned_cols=149  Identities=18%  Similarity=0.100  Sum_probs=117.0

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC-------CCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS-------NDTP  920 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~-------~gsa  920 (1102)
                      +|||+||.+|+.++++.||..   ....++..      ...|+||||+||..|+.++|++||++|++..       .+..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~---~~~~~~~~------d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHS---KPSLLLQK------DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH---CGGGTTCC------CTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHc---CCCccccc------CCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            699999999999999999985   22333433      2369999999999999999999999998531       0000


Q ss_pred             ------------------------------------------CC----------cCCCCCCCCCCCChHHHHHHhcCCcH
Q 001315          921 ------------------------------------------QK----------YIFPPNLAGPGGITPLHLAACTSDSD  948 (1102)
Q Consensus       921 ------------------------------------------~~----------ylfdpnakd~~G~TPLHiAA~~~g~e  948 (1102)
                                                                .+          ...+++.++..|.||||+|+.. +..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~  151 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSL  151 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhc-ccc
Confidence                                                      00          0124577899999999999996 677


Q ss_pred             HHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh-hccc----cCCceeeeeCc
Q 001315          949 DIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK-LADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       949 eVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K-ia~~----~~~~v~l~i~~ 1011 (1102)
                      +++++|++.    | ..++|.+|.+|.||||||+.+|+.++|++|+++ .++.    .+|+.+|++.-
T Consensus       152 ~~~~~Ll~~----~-~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         152 KLIELLCGL----G-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             HHHHHHHTT----T-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             ccccccccc----c-cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            899999987    2 357899999999999999999999999999975 4443    36788888753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.8e-18  Score=171.00  Aligned_cols=133  Identities=18%  Similarity=0.099  Sum_probs=95.1

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      ++|||+|+.+|+.+++++||+.+++.. .++..      ...|.||||+||..|+.++|++||++|+            +
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~-~i~~~------~~~g~TpL~~A~~~g~~~iv~~Ll~~ga------------~   70 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQ------NDLGQTALHLAAILGEASTVEKLYAAGA------------G   70 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSG-GGGCC------CTTSCCHHHHHHHHTCHHHHHHHHHTTC------------C
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCc------CCCCCCccchHHhhcccccccccccccc------------c
Confidence            489999999999999999999764411 12211      2258899999999999999999999998            4


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCC-----------------------------------------CCCCC
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQE-----------------------------------------IGPSS  965 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~-----------------------------------------iGagA  965 (1102)
                      +|.+|..|.||||+|+.. +..+++++|++....                                         ...++
T Consensus        71 i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T d1oy3d_          71 VLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (255)
T ss_dssp             SSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             ccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCc
Confidence            677777777777777764 556677776543110                                         01123


Q ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          966 WNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       966 ~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      +++.+|.+|.||||+|+..|+.+++++|+++.++
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~  183 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD  183 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ccccccccCcccccccccccccccccchhccccc
Confidence            5566777777777777777777777777776444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=3.1e-18  Score=166.71  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .|.|+||+|+..+...+++.|+++++            ++|.+|..|.||||+||.. |+.++|++|+++      +||+
T Consensus       122 ~~~t~l~~~~~~~~~~~~~~l~~~~~------------~~~~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~------gad~  182 (209)
T d1ot8a_         122 SGKTALHWAAAVNNTEAVNILLMHHA------------NRDAQDDKDETPLFLAARE-GSYEASKALLDN------FANR  182 (209)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTTC------------CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCT
T ss_pred             CCCCcchhhcccCcceeeeeeccccc------------cccccccccccccchhccc-cHHHHHHHHHHC------CCCC
Confidence            36799999999999999999999987            5788999999999999985 788999999997      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      |.+|.+|+||||||+++||.++|++|
T Consensus       183 n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999987

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=9.9e-19  Score=161.64  Aligned_cols=103  Identities=21%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcC
Q 001315          890 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSI  969 (1102)
Q Consensus       890 ~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNa  969 (1102)
                      .|||++|+++|+.++|++||++|+            ++|.+|..|+||||+|+.. +..+++++|++.      ++++|.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~------------d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~------g~din~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE------------DVNRTLEGGRKPLHYAADC-GQLEILEFLLLK------GADINA   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC------------CCCCCSSSSCCTTHHHHHH-STTTHHHHHHHS------SCTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh------------ccccccccccccccccccc-cccccccccccc------cceeee
Confidence            389999999999999999999998            5789999999999999996 677899999987      578999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          970 LDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       970 rD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      +|.+|.||||||+.+|+.++|++|++++++-    .+|..+|++..
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999999987654    36788887753

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.7e-18  Score=169.25  Aligned_cols=136  Identities=18%  Similarity=0.159  Sum_probs=111.6

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ..+++++++..++.++++.|++..    .+++..     +. .|.||||+|+.+|+.++|++||++|+            
T Consensus        70 ~~~~~~~~~~~~~~~i~~~Ll~~~----~d~~~~-----d~-~g~tpL~~A~~~~~~e~~~~Ll~~g~------------  127 (223)
T d1uoha_          70 GWSPLHIAASAGRDEIVKALLGKG----AQVNAV-----NQ-NGCTPLHYAASKNRHEIAVMLLEGGA------------  127 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----CT-TCCCHHHHHHHHTCHHHHHHHHHTTC------------
T ss_pred             ccccccccccccccchhHHHhccC----ceeEee-----CC-CCCchhhHHHHcCCHHHHHHHHHCCC------------
Confidence            347888889999999999998853    344433     22 58999999999999999999999998            


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      +++.++..|.||||+|+.. +..+++++|+..      ++++|.+|.+|.||||+|+.+|+.++|++|++++++.    .
T Consensus       128 d~~~~~~~~~t~L~~a~~~-~~~~~~~~L~~~------~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~  200 (223)
T d1uoha_         128 NPDAKDHYEATAMHRAAAK-GNLKMIHILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK  200 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCCcCCCCCccchhhhhc-CCcchhhhhccc------cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCC
Confidence            5788889999999999885 677788888876      4578899999999999999999999999999887765    3


Q ss_pred             CCceeeeeC
Q 001315         1002 NGQVTIPVG 1010 (1102)
Q Consensus      1002 ~~~v~l~i~ 1010 (1102)
                      +|+.+|+++
T Consensus       201 ~g~tpl~~A  209 (223)
T d1uoha_         201 EEKTPLQVA  209 (223)
T ss_dssp             TSCCHHHHC
T ss_pred             CCCCHHHHH
Confidence            577777776

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=1.4e-17  Score=170.10  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=117.7

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCC----CC---
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN----DT---  919 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~----gs---  919 (1102)
                      .++|+.||.+|+.++|+.||+.+    ++++..      ...|.||||+|+.+|+.+||++||++|++...    +.   
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~G----advn~~------d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L  110 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERG----ADINYA------NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL  110 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHC----CCTTCB------CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCC----CCCCcc------CCCCCcHHHHHHhcCCceeeeeecccccccccccccccccc
Confidence            58899999999999999999864    334422      22589999999999999999999999875210    00   


Q ss_pred             --------------------------CCCc------------------------------------------------CC
Q 001315          920 --------------------------PQKY------------------------------------------------IF  925 (1102)
Q Consensus       920 --------------------------a~~y------------------------------------------------lf  925 (1102)
                                                ..++                                                ..
T Consensus       111 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (291)
T d1s70b_         111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccc
Confidence                                      0000                                                01


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----c
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----R 1001 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~ 1001 (1102)
                      +....+..|.||||+|+.. |..++++.|++.      ++++|.+|.+|.||||+|+..|+.++|++|++++++.    .
T Consensus       191 ~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~------g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         191 NDVRHAKSGGTALHVAAAK-GYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             CCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccccCCCCChhhHHHHc-CChhhhcccccc------eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            2345678899999999986 778899999987      5689999999999999999999999999999997765    3


Q ss_pred             CCceeeeeCcc
Q 001315         1002 NGQVTIPVGVE 1012 (1102)
Q Consensus      1002 ~~~v~l~i~~~ 1012 (1102)
                      .|+.+|+++.+
T Consensus       264 ~G~TaL~~A~e  274 (291)
T d1s70b_         264 VGQTAFDVADE  274 (291)
T ss_dssp             TSCCTTTSCCS
T ss_pred             CCCCHHHHHHH
Confidence            58888988754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.6e-17  Score=156.05  Aligned_cols=152  Identities=17%  Similarity=0.118  Sum_probs=119.8

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCC----CCCC--
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSS----NDTP--  920 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~----~gsa--  920 (1102)
                      .||||+||.+|+.++++.|++.+.+.+++++..     + ..|+||||+|+..|+.++|++||++|++..    ++..  
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-----d-~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~   77 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-----N-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   77 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-----C-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-----C-CCCCccceehhccccccccccccccccccccccccccccc
Confidence            389999999999999999999877766666644     2 259999999999999999999999998531    1100  


Q ss_pred             ----------------------------CC-------------------------cCCCCCCCCCCCChHHHHHHhcCCc
Q 001315          921 ----------------------------QK-------------------------YIFPPNLAGPGGITPLHLAACTSDS  947 (1102)
Q Consensus       921 ----------------------------~~-------------------------ylfdpnakd~~G~TPLHiAA~~~g~  947 (1102)
                                                  ..                         ...........|.||||+|+.. +.
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~-~~  156 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NS  156 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TC
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHh-hh
Confidence                                        00                         0001234567899999999985 67


Q ss_pred             HHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeCc
Q 001315          948 DDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVGV 1011 (1102)
Q Consensus       948 eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~~ 1011 (1102)
                      ..+++.++..      +.+.+.+|.+|.||||+|+.+|+.+++++|++++++-    .+|+.+|.++.
T Consensus       157 ~~~~~~~~~~------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         157 LSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhhhhhh------ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            7899999887      4568899999999999999999999999999997764    35777777653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.9e-18  Score=169.66  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .+|||+|+.+|..+++++|++.+    ++++..     + ..|.||||+|+..++.+++++|+.+++            +
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~g----~d~~~~-----~-~~~~t~L~~a~~~~~~~~~~~L~~~~~------------~  161 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEGG----ANPDAK-----D-HYEATAMHRAAAKGNLKMIHILLYYKA------------S  161 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTT----CCTTCC-----C-TTSCCHHHHHHHTTCHHHHHHHHHTTC------------C
T ss_pred             CchhhHHHHcCCHHHHHHHHHCC----CCCCCc-----C-CCCCccchhhhhcCCcchhhhhccccc------------e
Confidence            48999999999999999999853    333322     2 258999999999999999999999987            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVAR  995 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~  995 (1102)
                      +|.+|..|+||||+||.. +..++|++|++.      ||++|.+|.+|+||||+|+ .||.+++++|++
T Consensus       162 i~~~d~~g~TpL~~Aa~~-g~~~~v~~LL~~------Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDE-ERVEEAKLLVSQ------GASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             eeeccCCCCceecccccc-CcHHHHHHHHHC------CCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            799999999999999985 778899999987      5789999999999999995 699999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.1e-18  Score=159.31  Aligned_cols=91  Identities=25%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      ++||.||..|+.++|++||++|+            +||.+|..|+||||+|+.. +..+++++|++.      ++++|.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~------------d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~------g~~~~~~   63 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD------------DPSLPNDEGITALHNAVCA-GHTEIVKFLVQF------GVNVNAA   63 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS------------SCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHH------TCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC------------Ccccccccccccccccccc-cccccccccccc------ccccccc
Confidence            78999999999999999999998            5899999999999999985 788999999987      5679999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                      |.+|+||||+|+..|+.++|++|+++.++-
T Consensus        64 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          64 DSDGWTPLHCAASCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccCcccccccchhhHHHHHHHHHHcCCCc
Confidence            999999999999999999999999987653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=176.98  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=104.8

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+++++.+++++|++.+++    ++..      ...+.||||.|+..++.+++++|+++|+            +
T Consensus       265 ~~~l~~a~~~~~~~i~~~Ll~~g~~----~~~~------~~~~~t~L~~~~~~~~~~~~~~ll~~g~------------~  322 (408)
T d1n11a_         265 LTPLHLVAQEGHVPVADVLIKHGVM----VDAT------TRMGYTPLHVASHYGNIKLVKFLLQHQA------------D  322 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC----TTCC------CSSCCCHHHHHHHSSCSHHHHHHHHTTC------------C
T ss_pred             CChhhhhhhcCcHHHHHHHHHCCCc----cccc------cccccccchhhcccCcceeeeeeccccc------------c
Confidence            4789999999999999999986533    3322      2247899999999999999999999998            5


Q ss_pred             CCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Q 001315          927 PNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLV  993 (1102)
Q Consensus       927 pnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLL  993 (1102)
                      +|.+|..|.||||+|+.. |+.++|++|+++      ||++|++|++|.||||||+++||.++|++|
T Consensus       323 in~~d~~G~T~Lh~A~~~-g~~~iv~~Ll~~------GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHT-TCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            789999999999999985 788999999998      678999999999999999999999999988

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=159.97  Aligned_cols=127  Identities=18%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAV----KMKCRRMVDLLIHYSLTSSNDTPQK  922 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV----~~gs~~IVeLLL~~GAd~~~gsa~~  922 (1102)
                      .++||+|+.+|+.++++.||+.   .+++++..     +. .+.++++.+.    ..+..+|+++||++|+         
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~---~~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga---------  210 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDE---MGADVNAC-----DN-MGRNALIHALLSSDDSDVEAITHLLLDHGA---------  210 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCC-----CT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTC---------
T ss_pred             chHHHHHHHcCCHHHHHHHHhc---cCCCcccc-----cC-CCCcccccccccccchHHHHHHHHHHHCCC---------
Confidence            4799999999999999999985   33454433     22 3555555543    3445679999999998         


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc
Q 001315          923 YIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR 1000 (1102)
Q Consensus       923 ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~ 1000 (1102)
                         ++|.++..|.||||+||.. ++.++|++|++..     ++++|.+|.+|.||||+|++.||.++|++|++++++.
T Consensus       211 ---~~n~~~~~g~t~L~~a~~~-~~~~~v~~lL~~~-----g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         211 ---DVNVRGERGKTPLILAVEK-KHLGLVQRLLEQE-----HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             ---CSSCCCTTSCCHHHHHHHT-TCHHHHHHHHHSS-----SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             ---CCCccCCCCCCccchhhhc-CcHHHHHHHHHcC-----CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence               5788999999999999985 7788999998742     5689999999999999999999999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=8.7e-17  Score=158.49  Aligned_cols=124  Identities=17%  Similarity=0.160  Sum_probs=104.6

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      ..++|+.++..++.++++.|++...+    ....      ...|+||||+|+..|+.+++++|++++.+           
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~----~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------  163 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGAS----VRIK------DKFNQIPLHRAASVGSLKLIELLCGLGKS-----------  163 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC----SCCC------CTTSCCHHHHHHHHTCHHHHHHHHTTTCC-----------
T ss_pred             cccccccccccchhhhhhhhhhhccc----cccc------CCCCCCccchhhhcccccccccccccccc-----------
Confidence            45889999999999999999986432    2222      22589999999999999999999999753           


Q ss_pred             CCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          926 PPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++|.+|..|+||||+|+.. +..++|++|++..     ||++|++|.+|.||||||+.   .+++++|+++++|
T Consensus       164 ~in~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~~-----gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         164 AVNWQDKQGWTPLFHALAE-GHGDAAVLLVEKY-----GAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHHH-----CCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccccccccCCchhhhccc-ccHHHHHHHHHhc-----CCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            5789999999999999985 7888999999631     57899999999999999984   5799999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3.1e-16  Score=152.40  Aligned_cols=136  Identities=16%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             chhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCC--C--CC--------------
Q 001315          859 CALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN--D--TP--------------  920 (1102)
Q Consensus       859 caVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~--g--sa--------------  920 (1102)
                      .+||+.||+.+++  +  +     ......|.||||+||++|+.++|++||.+|++...  .  ..              
T Consensus         2 ~~~v~~Ll~~g~d--i--n-----~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQGAE--L--N-----ATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHHHH--H--H-----HHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCC--c--C-----cCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            3799999998765  2  2     11123699999999999999999999999885310  0  00              


Q ss_pred             -------------------------------------CCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCC
Q 001315          921 -------------------------------------QKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGP  963 (1102)
Q Consensus       921 -------------------------------------~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGa  963 (1102)
                                                           ..+..+++.++..|.||||+|+.. +..++++.|+..      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~-~~~~~~~~l~~~------  145 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV-NNTEAVNILLMH------  145 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHT------
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhccc-Ccceeeeeeccc------
Confidence                                                 001235788999999999999985 778899999987      


Q ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          964 SSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       964 gA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      ++++|.+|.+|.||||+|+..|+.++|++|+++.++.    .+|..+|.++
T Consensus       146 ~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            4568999999999999999999999999999987764    2455555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-17  Score=162.80  Aligned_cols=78  Identities=19%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             CCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCC-CCCCCHHHHHHHcCCHHHHHHHHHhhccc----cC
Q 001315          928 NLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILD-ASGHSPYSYALMKNNHAYNKLVARKLADR----RN 1002 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD-~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~ 1002 (1102)
                      +.....|.||||+|+.. +..+++.+|+..      +++++.++ .+|.||||+|++.|+.+++++|+++.++-    .+
T Consensus       105 ~~~~~~~~t~l~~a~~~-~~~~~~~~l~~~------~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~  177 (221)
T d1iknd_         105 KATNYNGHTCLHLASIH-GYLGIVELLVSL------GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ  177 (221)
T ss_dssp             GCCCTTCCCHHHHHHHT-TCHHHHHHHHHH------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT
T ss_pred             cccccccchhhhHHhhc-CChhheeeeccc------CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCC
Confidence            44556788888888874 677788888776      34566655 57999999999999999999999886554    36


Q ss_pred             CceeeeeCcc
Q 001315         1003 GQVTIPVGVE 1012 (1102)
Q Consensus      1003 ~~v~l~i~~~ 1012 (1102)
                      |+.+|.+...
T Consensus       178 G~tpl~~A~~  187 (221)
T d1iknd_         178 GYSPYQLTWG  187 (221)
T ss_dssp             CCCGGGGCTT
T ss_pred             CCCHHHHHHH
Confidence            7788877543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.6e-16  Score=164.60  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             hHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCC
Q 001315          848 FLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPP  927 (1102)
Q Consensus       848 tLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdp  927 (1102)
                      ||||.|+.+|..++|+.||+.+    .+++..     + ..|.||||+|+++|+.++|++||++|++            +
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g----~~in~~-----d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad------------i   59 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRG----ASPNVS-----N-VKVETPLHMAARAGHTEVAKYLLQNKAK------------V   59 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT----CCSCCS-----S-SCCCCHHHHHHHHTCHHHHHHHHHHTCC------------S
T ss_pred             ChHHHHHHCcCHHHHHHHHHCC----CCCCCC-----C-CCCCCHHHHHHHcCCHHHHHHHHHCcCC------------C
Confidence            7999999999999999999864    344433     2 2589999999999999999999999983            5


Q ss_pred             CCCCCCCChHHHHHHhcCCcHH----------------------------------------------------------
Q 001315          928 NLAGPGGITPLHLAACTSDSDD----------------------------------------------------------  949 (1102)
Q Consensus       928 nakd~~G~TPLHiAA~~~g~ee----------------------------------------------------------  949 (1102)
                      |.++..|+||||+|+.. |..+                                                          
T Consensus        60 ~~~~~~g~t~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (408)
T d1n11a_          60 NAKAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  138 (408)
T ss_dssp             SCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHc-CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHH
Confidence            66666666666666653 3344                                                          


Q ss_pred             --------HHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          950 --------IIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       950 --------VVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                              +++.|+++      +++++..|.+|.||||+|+..|+.+++++|+++.++
T Consensus       139 a~~~~~~~~v~~ll~~------~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~  190 (408)
T d1n11a_         139 AAKYGKVRVAELLLER------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  190 (408)
T ss_dssp             HHHTTCHHHHHHHHHT------TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             HHHcCCHHHHHHHHHc------CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc
Confidence                    44444444      346777888888888888888888888888877554

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.4e-16  Score=153.06  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=104.4

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFP  926 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfd  926 (1102)
                      .++|++|+.++..++++.|+..+....    ...........|.|+||.|+..++.+++++|+..|+.            
T Consensus        73 ~t~l~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------------  136 (221)
T d1iknd_          73 NTPLHLACEQGCLASVGVLTQSCTTPH----LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------  136 (221)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTS----SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------
T ss_pred             ccccccccccccccccchhhhhccccc----ccccccccccccchhhhHHhhcCChhheeeecccCcc------------
Confidence            478999999999999999988643311    1111111222478999999999999999999999873            


Q ss_pred             CCCC-CCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          927 PNLA-GPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       927 pnak-d~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      ++.+ +.+|.||||+|+.. |..+++++|+++      |||+|++|.+|.||||+|+.+|+.+++++|.+...+
T Consensus       137 ~~~~~~~~G~T~L~~A~~~-g~~~~v~~Ll~~------gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         137 VNAQEPCNGRTALHLAVDL-QNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTCCCTTTCCCHHHHHHHT-TCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cccccccCCCCcccccccc-ccHHHHHHHHhc------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            3444 56799999999985 788999999987      578999999999999999999999999999887554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.6e-16  Score=145.40  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=87.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCc
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNS  968 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vN  968 (1102)
                      +.++||+||++|+.++|++||++|+            +||.+|..|.||||+|+  .|+.+++++|+++      ++++|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~ga------------d~n~~~~~g~t~l~~a~--~g~~~~v~~Ll~~------ga~~~   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGA------------NPNAPNSYGRRPIQVMM--MGSARVAELLLLH------GAEPN   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTC------------CTTCCCSSSCCTTTSSC--TTCHHHHHHHHTT------TCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCC------------ccccccccccccccccc--ccccccccccccc------ccccc
Confidence            4589999999999999999999998            58999999999999775  3788999999998      56799


Q ss_pred             CCCCCCC-CHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeee
Q 001315          969 ILDASGH-SPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPV 1009 (1102)
Q Consensus       969 arD~~G~-TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i 1009 (1102)
                      .+|..|. ||||+|+++|+.+++++|+++.++.    .+|+.+|.+
T Consensus        63 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          63 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCHHHH
Confidence            9999876 6999999999999999999997654    245555554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.60  E-value=2.4e-17  Score=177.85  Aligned_cols=131  Identities=11%  Similarity=0.049  Sum_probs=101.7

Q ss_pred             hhhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCC
Q 001315          846 FKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIF  925 (1102)
Q Consensus       846 fktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylf  925 (1102)
                      -.++|++|+.+|+.++++.+-. |...+.+++..     +. .|+||||+||++||.++|++||++|+            
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~-L~~~~~~in~~-----~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~------------  150 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCL-LLTSDEIVKVI-----QA-ENYQAFRLAAENGHLHVLNRLCELAP------------  150 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC-------CH-HHHHHHHHHHHTTCHHHHHHHHHSCT------------
T ss_pred             CCcHHHHHHHhCCHHHHHHHHH-HHhCCCccccc-----CC-CCCCHHHHHHHCCCHHHHHHHHHcCC------------
Confidence            4699999999999988876422 11133445533     33 58999999999999999999999998            


Q ss_pred             CCCCCC--CCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          926 PPNLAG--PGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       926 dpnakd--~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      +++..+  .+|.||||+||. .|+.+||++|++.+..   ..+++..+.+|.||+|+|+.+||.++|++|+++.++
T Consensus       151 ~~~~~~~~~~g~t~L~~Aa~-~g~~~iv~~Ll~~~~~---~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         151 TEIMAMIQAENYHAFRLAAE-NGHLHVLNRLCELAPT---EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             TTHHHHHSHHHHHHHHHHHH-TTCHHHHHHHHHSCGG---GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             CccccccccCCCChhHHHHH-HhhHHHHHHHHHcCCc---ccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            356654  469999999998 5899999999987211   123456677889999999999999999999988654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=5.4e-17  Score=163.25  Aligned_cols=120  Identities=14%  Similarity=0.091  Sum_probs=97.2

Q ss_pred             hHHHHHHh-cCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHH--------cCCCCCCC
Q 001315          848 FLLVFSVD-RGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIH--------YSLTSSND  918 (1102)
Q Consensus       848 tLL~FAad-rGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~--------~GAd~~~g  918 (1102)
                      +|||+++. .|..++++.|....    ++..       +...|+||||+||.+|+.++|++||.        .||     
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~----~n~~-------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga-----   65 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRES----VNII-------DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-----   65 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTT----TTTC-------CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-----
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcC----CCcC-------CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC-----
Confidence            46666554 46777776666632    3222       22258999999999999999998864        566     


Q ss_pred             CCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 001315          919 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKL  997 (1102)
Q Consensus       919 sa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Ki  997 (1102)
                             +||++|..|.||||+|+.. |+.++|++|+++      ||++|.+|.+|.||||+|...|+.++++++....
T Consensus        66 -------dvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~------Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          66 -------DVNAMDCDENTPLMLAVLA-RRRRLVAYLMKA------GADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             -------CTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             -------CccccCCCCCeeecccccc-cccccccccccc------ccccccccccccccccchhhhcchhhhhhhhhcc
Confidence                   6899999999999999985 788999999998      5789999999999999999999999999887653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-16  Score=147.69  Aligned_cols=85  Identities=19%  Similarity=0.135  Sum_probs=76.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .+.++||.|+..+...+++.++++|.            .++.+|..|.||||+||.. |+.++|++|++.      |||+
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~------------~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~------Gad~  203 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGA------------NVNAQMYSGSSALHSASGR-GLLPLVRTLVRS------GADS  203 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------------CTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHT------TCCT
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhcc------------ccccccccCcchHHHHHHc-CCHHHHHHHHHC------CCCC
Confidence            46799999999999999999999886            4678899999999999996 788899999998      5789


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHH
Q 001315          968 SILDASGHSPYSYALMKNNHAYNK  991 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVe  991 (1102)
                      |++|.+|.||||||+++|+.++|+
T Consensus       204 n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         204 SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999988874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2e-15  Score=158.51  Aligned_cols=111  Identities=14%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCC------cHHHHHHHhCCCC--
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSD------SDDIIDALTNDPQ--  959 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g------~eeVVeLLL~~p~--  959 (1102)
                      .|+||||+||..|+.+||++||++||            +++.+|..|+||||+|+...+      .++++++|.....  
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~ga------------d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGS------------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------------CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCC------------CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            59999999999999999999999999            578889999999999986321      1344554432100  


Q ss_pred             -CCCC----------------------------------------------------------------------CCCCc
Q 001315          960 -EIGP----------------------------------------------------------------------SSWNS  968 (1102)
Q Consensus       960 -~iGa----------------------------------------------------------------------gA~vN  968 (1102)
                       .-|.                                                                      +..+|
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence             0000                                                                      00178


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          969 ILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       969 arD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      ++|.+|.||||+|+++|+.++|++|++++++.    .+|..+|+++
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            99999999999999999999999999998866    3688887765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8e-15  Score=136.59  Aligned_cols=107  Identities=17%  Similarity=0.088  Sum_probs=84.3

Q ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCC----------
Q 001315          890 IQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQ----------  959 (1102)
Q Consensus       890 ~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~----------  959 (1102)
                      .||||.||+.|+.++|++||++|++            ++ +|..|+||||+|+.. +..++++.++..+.          
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~------------~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~   68 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP------------FT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC------------CC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC------------cc-cccCCCccccccccc-cccccccccccccccccccccccc
Confidence            3999999999999999999999983            33 588899999999885 55666666654433          


Q ss_pred             -----------------CCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          960 -----------------EIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       960 -----------------~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                                       .+-.+++.+.+|.+|.||||+|+..|+.++|++|+++.++-    .+|..+|.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHH
Confidence                             00114578999999999999999999999999999997654    3566666653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=3.7e-15  Score=156.43  Aligned_cols=119  Identities=21%  Similarity=0.125  Sum_probs=85.9

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCC-------HHHHHHHHHcCCC-CCCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKC-------RRMVDLLIHYSLT-SSND  918 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs-------~~IVeLLL~~GAd-~~~g  918 (1102)
                      +++||+|+..|+.++|++||+.+    ++++..     +. .|+||||+||..++       .+++++|...... ...|
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~g----ad~~~~-----d~-~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHG----SNRLYG-----DN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CCTTBC-----CT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC----CCCCcC-----Cc-ccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            49999999999999999999864    334433     22 48899999997664       2455544321110 0000


Q ss_pred             C----------------------------------------------C-----CC-------------c--CCCCCCCCC
Q 001315          919 T----------------------------------------------P-----QK-------------Y--IFPPNLAGP  932 (1102)
Q Consensus       919 s----------------------------------------------a-----~~-------------y--lfdpnakd~  932 (1102)
                      .                                              .     ..             +  .-.+|++|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            0                                              0     00             0  002799999


Q ss_pred             CCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHH
Q 001315          933 GGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYAL  982 (1102)
Q Consensus       933 ~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa  982 (1102)
                      +|+||||+||.. |+.+||++|++.      ||++|++|++|.||||||+
T Consensus       258 ~G~TpLh~A~~~-g~~~iv~~Ll~~------GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARL-GNISIVDALLDY------GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHH-CCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHc-CCHHHHHHHHHC------CCCCCCCCCCCCCHHHHcC
Confidence            999999999985 788999999998      6789999999999999996

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.5e-14  Score=132.62  Aligned_cols=89  Identities=16%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      ++||+||..|+.++|++||++|+            +||.+|..|+||||+|+.  ++.+++++|+++      +++++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~------------d~n~~d~~g~TpL~~A~~--~~~ei~~~Ll~~------~a~~~~~   62 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV------------NVNAQNGFGRTALQVMKL--GNPEIARRLLLR------GANPDLK   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC------------CTTCCCTTSCCHHHHCCS--SCHHHHHHHHHT------TCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC------------CcCccCCccccccccccc--cccccccccccc------ccccccc
Confidence            89999999999999999999998            589999999999998863  678899999997      5679999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhcc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLAD  999 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia~  999 (1102)
                      |.+|.|||++|+..|+.++++.|+++..+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~   91 (156)
T d1ihba_          63 DRTGFAVIHDAARAGFLDTLQTLLEFQAD   91 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cccCccccccccccccccccccccccccc
Confidence            99999999999999999999999887544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.46  E-value=4.4e-15  Score=159.97  Aligned_cols=92  Identities=11%  Similarity=0.035  Sum_probs=77.7

Q ss_pred             cCchHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDL---LIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPS  964 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeL---LL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGag  964 (1102)
                      .|.|+||+|+++||.+++++   |+++|+            ++|.+|..|+||||+||. .|+.+||++|++.      +
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~------------~in~~~~~g~taL~~Aa~-~G~~~~v~~Ll~~------g  149 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDE------------IVKVIQAENYQAFRLAAE-NGHLHVLNRLCEL------A  149 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCS------------SCC--CHHHHHHHHHHHH-TTCHHHHHHHHHS------C
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCC------------cccccCCCCCCHHHHHHH-CCCHHHHHHHHHc------C
Confidence            57899999999999887765   788888            579999999999999998 5899999999997      5


Q ss_pred             CCCcCCC--CCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          965 SWNSILD--ASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       965 A~vNarD--~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      +++++.|  .+|.||||+|+.+||.++|++|+++.+
T Consensus       150 ~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             TTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             CCccccccccCCCChhHHHHHHhhHHHHHHHHHcCC
Confidence            6778876  469999999999999999999998754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=2.3e-13  Score=138.44  Aligned_cols=103  Identities=18%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             cCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCC
Q 001315          888 WEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWN  967 (1102)
Q Consensus       888 ~g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~v  967 (1102)
                      .+.|+||.||..|+.++|++||++|+            +||.+|.+|+||||+|+. .|+.++|++|+++      +++.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Ga------------dvn~~d~~G~T~L~~A~~-~g~~eiv~~Ll~~------~~~~   99 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGA------------DINYANVDGLTALHQACI-DDNVDMVKFLVEN------GANI   99 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCC------------CTTCBCTTCCBHHHHHHH-TTCHHHHHHHHHT------TCCT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCC------------CCCccCCCCCcHHHHHHh-cCCceeeeeeccc------cccc
Confidence            35699999999999999999999998            589999999999999998 4888999999998      4568


Q ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeee
Q 001315          968 SILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPV 1009 (1102)
Q Consensus       968 NarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i 1009 (1102)
                      +..+..+.||||+|+..|+.++++.|+++....    .++...+.+
T Consensus       100 ~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (291)
T d1s70b_         100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI  145 (291)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccccchhhcccccCcccccccccCcccccc
Confidence            889999999999999999999999999886655    244444444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.1e-13  Score=132.47  Aligned_cols=110  Identities=21%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhc--CCcHHHHHHHhCCCCCCCCCCC
Q 001315          889 EIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACT--SDSDDIIDALTNDPQEIGPSSW  966 (1102)
Q Consensus       889 g~TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~--~g~eeVVeLLL~~p~~iGagA~  966 (1102)
                      ....|+.|++.++...+..++..|++...      .......+..|.||||+|+..  .+..+||++|+++      +++
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~------gad   73 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTE------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN------SGN   73 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTS------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH------CSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCC------CCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc------CCC
Confidence            34668899999999999999999885310      112234567899999999974  3567899999987      568


Q ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHhhccc----cCCceeeeeC
Q 001315          967 NSILDASGHSPYSYALMKNNHAYNKLVARKLADR----RNGQVTIPVG 1010 (1102)
Q Consensus       967 vNarD~~G~TPLHyAa~~G~~eiVeLLl~Kia~~----~~~~v~l~i~ 1010 (1102)
                      +|.+|.+|.||||||+..|+.+++++|+++.++-    .+|+.+|.+.
T Consensus        74 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  121 (154)
T d1dcqa1          74 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA  121 (154)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             hhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHH
Confidence            9999999999999999999999999999997654    2566666654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=131.55  Aligned_cols=132  Identities=14%  Similarity=0.056  Sum_probs=103.0

Q ss_pred             hhHHHHHHhcCcchhHHHHHHHHHhccccCCCCChHHHhhhcCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCcCC
Q 001315          847 KFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHY-SLTSSNDTPQKYIF  925 (1102)
Q Consensus       847 ktLL~FAadrGwcaVVK~LLd~L~~g~v~i~~~s~e~~~~~~g~TlLH~AV~~gs~~IVeLLL~~-GAd~~~gsa~~ylf  925 (1102)
                      .+.|++|+.+++..+++.++....+.................|.||||+|+++|+.+++++||++ |+            
T Consensus       106 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~------------  173 (285)
T d1wdya_         106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA------------  173 (285)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC------------
T ss_pred             CchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCC------------
Confidence            37899999999999999988854332211111111122233588999999999999999999976 55            


Q ss_pred             CCCCCCCCCChHHHHHHh---cCCcHHHHHHHhCCCCCCCCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 001315          926 PPNLAGPGGITPLHLAAC---TSDSDDIIDALTNDPQEIGPSSWNSILDASGHSPYSYALMKNNHAYNKLVARK  996 (1102)
Q Consensus       926 dpnakd~~G~TPLHiAA~---~~g~eeVVeLLL~~p~~iGagA~vNarD~~G~TPLHyAa~~G~~eiVeLLl~K  996 (1102)
                      +++..+..|.++++.+..   ..+..+|++.|++.      ++++|.+|..|.||||+|+..|+.++|++|+++
T Consensus       174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~------ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             CcccccCCCCcccccccccccchHHHHHHHHHHHC------CCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            578899999988887644   34456799999987      567999999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.6e-11  Score=113.43  Aligned_cols=89  Identities=24%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCcCCCCCCCCCCCChHHHHHHhcCCcHHHHHHHhCCCCCCCCCCCCcCC
Q 001315          891 QLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEIGPSSWNSIL  970 (1102)
Q Consensus       891 TlLH~AV~~gs~~IVeLLL~~GAd~~~gsa~~ylfdpnakd~~G~TPLHiAA~~~g~eeVVeLLL~~p~~iGagA~vNar  970 (1102)
                      +.||.||.+|+.++|+.||..+.           .+||.+|..|+||||+|+.  ++.++++.|+.+      ++++|.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~-----------~~~n~~d~~g~t~L~~A~~--~~~~~v~~Ll~~------~~~~~~~   64 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL-----------VHPDALNRFGKTALQVMMF--GSTAIALELLKQ------GASPNVQ   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-----------CCTTCCCTTSCCHHHHSCT--TCHHHHHHHHHT------TCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-----------CCCCccCCCCCcccccccc--cccccccccccc------ccccccc
Confidence            45999999999999999998643           1567777788888887754  445667777665      3456666


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhc
Q 001315          971 DASGHSPYSYALMKNNHAYNKLVARKLA  998 (1102)
Q Consensus       971 D~~G~TPLHyAa~~G~~eiVeLLl~Kia  998 (1102)
                      +..|.+|+++|+..++.+++++++++..
T Consensus        65 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~   92 (156)
T d1bd8a_          65 DTSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccc
Confidence            7777777777777777777776666543