Query 001316
Match_columns 1102
No_of_seqs 737 out of 3484
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 21:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.1E-88 4.6E-93 819.4 65.9 401 96-502 45-470 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 5.1E-90 1.1E-94 815.7 45.9 377 99-476 3-412 (1221)
3 PLN03188 kinesin-12 family pro 100.0 9.4E-83 2E-87 775.5 82.2 355 92-454 90-468 (1320)
4 KOG4280 Kinesin-like protein [ 100.0 1.8E-88 3.9E-93 792.5 27.7 355 98-453 3-370 (574)
5 KOG0242 Kinesin-like protein [ 100.0 7.7E-86 1.7E-90 799.0 34.1 355 99-456 5-369 (675)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 5.3E-84 1.1E-88 734.1 31.7 341 98-440 5-353 (607)
7 KOG0241 Kinesin-like protein [ 100.0 2.4E-82 5.2E-87 734.6 34.8 353 98-451 2-383 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 3.1E-79 6.7E-84 698.4 34.4 318 100-418 1-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 3E-78 6.4E-83 690.5 33.9 318 101-418 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 3.8E-76 8.3E-81 674.6 33.5 312 100-416 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 9.3E-76 2E-80 674.9 35.5 326 100-425 1-356 (356)
12 cd01374 KISc_CENP_E Kinesin mo 100.0 3.5E-74 7.5E-79 653.5 34.4 317 101-418 1-321 (321)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 4.4E-74 9.5E-79 655.4 34.9 319 100-418 1-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 2.5E-74 5.4E-79 654.4 32.6 309 100-416 1-322 (322)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1E-73 2.3E-78 657.3 34.7 325 100-426 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.7E-73 5.9E-78 647.3 34.5 317 100-418 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 7.8E-73 1.7E-77 641.6 33.6 309 101-416 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 2E-72 4.4E-77 641.8 33.4 312 101-416 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.5E-72 5.4E-77 643.5 33.8 316 101-419 2-341 (341)
20 cd01366 KISc_C_terminal Kinesi 100.0 1.4E-70 3.1E-75 626.1 35.1 318 99-420 1-328 (329)
21 KOG0239 Kinesin (KAR3 subfamil 100.0 1.4E-70 3E-75 663.5 25.7 326 96-425 310-647 (670)
22 smart00129 KISc Kinesin motor, 100.0 4E-69 8.6E-74 615.7 35.3 325 101-425 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 9.2E-68 2E-72 602.7 35.2 316 101-416 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 9.2E-69 2E-73 612.6 23.4 312 107-418 1-335 (335)
25 KOG0244 Kinesin-like protein [ 100.0 1.1E-67 2.3E-72 630.5 32.9 338 108-452 1-350 (913)
26 KOG0246 Kinesin-like protein [ 100.0 6.9E-68 1.5E-72 599.5 27.0 319 97-422 205-545 (676)
27 KOG0247 Kinesin-like protein [ 100.0 7.8E-66 1.7E-70 597.8 33.7 330 94-425 25-443 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 5E-61 1.1E-65 578.3 29.4 344 96-447 18-365 (568)
29 cd01363 Motor_domain Myosin an 100.0 3.4E-48 7.3E-53 407.7 18.9 177 157-397 8-186 (186)
30 KOG0978 E3 ubiquitin ligase in 99.5 1.3E-12 2.9E-17 157.2 28.4 60 1029-1101 631-697 (698)
31 KOG0612 Rho-associated, coiled 99.5 1.6E-12 3.5E-17 160.4 20.9 274 644-943 506-802 (1317)
32 KOG4265 Predicted E3 ubiquitin 99.3 4.9E-13 1.1E-17 148.6 -2.0 82 1020-1101 253-342 (349)
33 KOG4172 Predicted E3 ubiquitin 99.0 8E-12 1.7E-16 101.9 -3.6 49 1054-1102 8-61 (62)
34 KOG4275 Predicted E3 ubiquitin 98.9 3.1E-10 6.8E-15 122.0 0.2 50 1053-1102 300-349 (350)
35 KOG1571 Predicted E3 ubiquitin 98.8 1.2E-09 2.7E-14 121.9 1.0 55 1048-1102 300-354 (355)
36 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.7E-09 3.8E-14 89.7 1.4 43 1054-1096 3-49 (50)
37 KOG1100 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 101.1 2.6 47 1055-1101 160-206 (207)
38 PF07888 CALCOCO1: Calcium bin 98.3 0.0018 3.8E-08 77.9 33.9 26 644-669 169-194 (546)
39 KOG0823 Predicted E3 ubiquitin 98.3 4.3E-07 9.3E-12 96.5 2.8 51 1050-1101 44-103 (230)
40 TIGR02169 SMC_prok_A chromosom 98.2 0.0023 5.1E-08 85.4 35.4 14 178-191 27-40 (1164)
41 TIGR02169 SMC_prok_A chromosom 98.0 0.0036 7.8E-08 83.6 32.5 31 927-957 462-492 (1164)
42 PLN03208 E3 ubiquitin-protein 98.0 2.3E-06 5E-11 89.6 1.1 49 1052-1101 17-87 (193)
43 TIGR02168 SMC_prok_B chromosom 97.9 0.027 6E-07 75.2 37.6 16 176-191 25-40 (1179)
44 TIGR02168 SMC_prok_B chromosom 97.9 0.027 5.8E-07 75.3 37.4 15 929-943 967-981 (1179)
45 KOG0996 Structural maintenance 97.9 0.23 5E-06 63.9 42.2 232 608-847 779-1032(1293)
46 KOG4673 Transcription factor T 97.8 0.029 6.2E-07 67.7 32.1 53 810-862 513-568 (961)
47 KOG0320 Predicted E3 ubiquitin 97.8 4.7E-06 1E-10 85.1 0.9 47 1054-1101 132-186 (187)
48 KOG0317 Predicted E3 ubiquitin 97.8 4.9E-06 1.1E-10 91.0 0.9 45 1052-1097 238-286 (293)
49 PF07888 CALCOCO1: Calcium bin 97.8 0.011 2.5E-07 71.2 28.5 33 706-738 204-236 (546)
50 PF10174 Cast: RIM-binding pro 97.8 0.045 9.8E-07 69.4 34.4 235 609-850 109-366 (775)
51 KOG0161 Myosin class II heavy 97.8 0.014 3.1E-07 79.2 31.6 179 644-828 1060-1260(1930)
52 COG5059 KIP1 Kinesin-like prot 97.7 1.1E-06 2.3E-11 107.8 -7.7 248 100-361 305-566 (568)
53 KOG0963 Transcription factor/C 97.7 0.017 3.7E-07 69.7 26.5 159 651-855 187-345 (629)
54 KOG0971 Microtubule-associated 97.6 0.23 5E-06 62.0 35.6 119 612-738 229-355 (1243)
55 PHA02929 N1R/p28-like protein; 97.6 3.5E-05 7.6E-10 84.1 3.3 47 1053-1100 174-232 (238)
56 PRK03918 chromosome segregatio 97.6 0.14 3E-06 66.9 36.8 14 178-191 27-40 (880)
57 COG1196 Smc Chromosome segrega 97.6 0.083 1.8E-06 71.0 35.3 31 926-956 976-1006(1163)
58 KOG2164 Predicted E3 ubiquitin 97.6 2.1E-05 4.6E-10 91.9 1.2 43 1053-1096 186-237 (513)
59 PF14634 zf-RING_5: zinc-RING 97.5 4.2E-05 9.1E-10 61.9 1.9 37 1055-1092 1-44 (44)
60 PF13923 zf-C3HC4_2: Zinc fing 97.5 3E-05 6.4E-10 61.0 0.9 34 1056-1090 1-39 (39)
61 TIGR00606 rad50 rad50. This fa 97.5 0.059 1.3E-06 73.3 31.9 92 644-735 749-849 (1311)
62 PRK02224 chromosome segregatio 97.5 0.07 1.5E-06 69.7 31.3 15 177-191 26-40 (880)
63 KOG0161 Myosin class II heavy 97.5 0.082 1.8E-06 72.3 32.0 34 156-190 150-184 (1930)
64 COG1196 Smc Chromosome segrega 97.5 0.11 2.5E-06 69.7 33.7 59 779-837 780-838 (1163)
65 PF15070 GOLGA2L5: Putative go 97.4 0.099 2.1E-06 65.1 30.5 208 607-837 87-310 (617)
66 PF09730 BicD: Microtubule-ass 97.4 0.29 6.2E-06 61.5 34.4 116 606-738 264-382 (717)
67 KOG0971 Microtubule-associated 97.4 0.34 7.4E-06 60.6 33.7 86 651-738 229-341 (1243)
68 COG1579 Zn-ribbon protein, pos 97.4 0.023 5E-07 62.3 21.9 129 773-943 12-140 (239)
69 PRK11637 AmiB activator; Provi 97.4 0.096 2.1E-06 62.8 29.4 84 642-738 43-126 (428)
70 PF08826 DMPK_coil: DMPK coile 97.4 0.00043 9.3E-09 59.8 6.8 46 906-958 1-56 (61)
71 KOG4674 Uncharacterized conser 97.4 0.23 5.1E-06 67.1 34.7 187 641-850 1094-1294(1822)
72 TIGR00606 rad50 rad50. This fa 97.4 0.18 3.8E-06 68.8 34.8 134 651-799 797-930 (1311)
73 KOG0933 Structural maintenance 97.4 0.32 6.9E-06 61.7 33.2 21 142-162 115-135 (1174)
74 PF12128 DUF3584: Protein of u 97.3 0.35 7.6E-06 65.3 36.3 105 610-738 603-708 (1201)
75 KOG0995 Centromere-associated 97.3 0.17 3.7E-06 60.9 29.2 78 709-811 295-372 (581)
76 PHA02562 46 endonuclease subun 97.3 0.036 7.9E-07 68.5 24.5 66 608-673 182-247 (562)
77 PRK02224 chromosome segregatio 97.3 0.14 3E-06 67.0 30.7 89 644-738 347-442 (880)
78 PRK04863 mukB cell division pr 97.2 0.13 2.8E-06 69.9 30.2 91 648-738 309-399 (1486)
79 COG5574 PEX10 RING-finger-cont 97.2 9.5E-05 2E-09 80.2 0.8 42 1053-1095 215-262 (271)
80 PF13639 zf-RING_2: Ring finge 97.2 0.0001 2.2E-09 59.5 0.8 36 1055-1091 2-44 (44)
81 KOG0976 Rho/Rac1-interacting s 97.2 1.1 2.5E-05 55.4 34.0 105 607-717 38-157 (1265)
82 PF09726 Macoilin: Transmembra 97.2 0.041 8.8E-07 69.3 23.3 177 709-943 454-638 (697)
83 TIGR00599 rad18 DNA repair pro 97.2 0.00013 2.9E-09 85.0 1.5 43 1053-1096 26-72 (397)
84 KOG0994 Extracellular matrix g 97.2 0.84 1.8E-05 58.5 33.2 50 786-835 1592-1641(1758)
85 PHA02926 zinc finger-like prot 97.1 0.00012 2.5E-09 77.8 0.4 45 1054-1099 171-234 (242)
86 KOG0933 Structural maintenance 97.1 0.57 1.2E-05 59.5 30.9 23 650-672 712-734 (1174)
87 KOG4674 Uncharacterized conser 97.1 1.1 2.4E-05 60.9 35.5 227 707-959 578-823 (1822)
88 COG5185 HEC1 Protein involved 97.1 0.17 3.7E-06 59.1 24.5 99 707-837 329-427 (622)
89 PF14662 CCDC155: Coiled-coil 97.0 0.2 4.4E-06 52.8 23.0 95 707-837 21-119 (193)
90 KOG1785 Tyrosine kinase negati 97.0 0.00025 5.4E-09 80.0 1.8 42 1055-1097 371-418 (563)
91 KOG0977 Nuclear envelope prote 97.0 0.51 1.1E-05 57.4 29.4 90 647-736 57-162 (546)
92 smart00184 RING Ring finger. E 97.0 0.00048 1E-08 52.5 2.2 34 1056-1090 1-39 (39)
93 cd00162 RING RING-finger (Real 96.9 0.0006 1.3E-08 53.9 2.6 39 1055-1094 1-45 (45)
94 PF12128 DUF3584: Protein of u 96.9 2 4.2E-05 58.4 36.9 78 778-855 476-561 (1201)
95 KOG4643 Uncharacterized coiled 96.9 0.74 1.6E-05 58.5 29.7 149 646-802 198-346 (1195)
96 COG5432 RAD18 RING-finger-cont 96.9 0.00031 6.8E-09 76.4 1.1 43 1053-1096 25-71 (391)
97 KOG0996 Structural maintenance 96.9 0.53 1.1E-05 60.8 28.7 65 774-838 468-532 (1293)
98 KOG0287 Postreplication repair 96.9 0.00029 6.3E-09 78.2 0.4 41 1055-1096 25-69 (442)
99 COG4372 Uncharacterized protei 96.9 0.71 1.5E-05 53.1 26.6 26 774-799 147-172 (499)
100 PRK11637 AmiB activator; Provi 96.8 0.098 2.1E-06 62.8 21.6 74 777-850 60-133 (428)
101 PF15070 GOLGA2L5: Putative go 96.8 2.1 4.5E-05 53.7 33.3 94 645-738 42-138 (617)
102 PF15227 zf-C3HC4_4: zinc fing 96.8 0.00051 1.1E-08 55.1 1.4 34 1056-1090 1-42 (42)
103 PF14447 Prok-RING_4: Prokaryo 96.8 0.00055 1.2E-08 57.4 1.6 41 1055-1096 9-51 (55)
104 PF00261 Tropomyosin: Tropomyo 96.8 0.19 4.2E-06 55.5 21.6 148 689-850 3-150 (237)
105 PRK03918 chromosome segregatio 96.7 2.4 5.2E-05 55.5 35.2 21 923-943 455-475 (880)
106 PRK04863 mukB cell division pr 96.7 1.3 2.8E-05 60.6 32.8 149 692-840 374-533 (1486)
107 KOG0612 Rho-associated, coiled 96.7 0.42 9.1E-06 61.8 26.2 75 761-835 571-645 (1317)
108 PF05701 WEMBL: Weak chloropla 96.7 1.9 4E-05 53.3 31.7 219 608-840 131-357 (522)
109 COG4942 Membrane-bound metallo 96.7 0.99 2.1E-05 53.3 27.5 50 614-674 38-87 (420)
110 PF00097 zf-C3HC4: Zinc finger 96.7 0.00058 1.3E-08 54.1 0.9 34 1056-1090 1-41 (41)
111 smart00504 Ubox Modified RING 96.6 0.001 2.2E-08 57.5 1.9 41 1055-1096 3-47 (63)
112 PF05701 WEMBL: Weak chloropla 96.6 3 6.5E-05 51.5 35.0 141 684-838 278-418 (522)
113 PF04849 HAP1_N: HAP1 N-termin 96.6 0.43 9.4E-06 54.1 22.8 180 609-818 106-302 (306)
114 KOG0250 DNA repair protein RAD 96.6 0.34 7.3E-06 62.3 24.2 177 645-834 280-464 (1074)
115 KOG0977 Nuclear envelope prote 96.5 0.091 2E-06 63.7 18.2 121 612-738 68-192 (546)
116 KOG0980 Actin-binding protein 96.4 3.3 7.2E-05 52.4 30.5 80 760-839 413-492 (980)
117 KOG4692 Predicted E3 ubiquitin 96.4 0.0018 3.8E-08 72.4 2.7 45 1051-1096 420-468 (489)
118 KOG0976 Rho/Rac1-interacting s 96.4 2.1 4.6E-05 53.1 28.1 214 607-844 127-347 (1265)
119 PF09755 DUF2046: Uncharacteri 96.4 2.1 4.5E-05 48.7 26.3 108 709-837 136-253 (310)
120 PF00038 Filament: Intermediat 96.4 1.9 4.1E-05 49.4 27.2 30 709-738 104-133 (312)
121 PF10174 Cast: RIM-binding pro 96.3 5.3 0.00011 51.3 32.7 78 645-728 286-363 (775)
122 PHA02562 46 endonuclease subun 96.3 3.2 7E-05 51.4 30.8 17 175-191 28-44 (562)
123 KOG4643 Uncharacterized coiled 96.3 5.8 0.00012 51.0 32.9 67 628-698 236-312 (1195)
124 KOG0946 ER-Golgi vesicle-tethe 96.3 0.47 1E-05 59.0 22.0 18 438-455 453-470 (970)
125 PF13445 zf-RING_UBOX: RING-ty 96.2 0.0015 3.3E-08 52.6 0.6 27 1056-1084 1-31 (43)
126 PF09726 Macoilin: Transmembra 96.2 4 8.8E-05 51.9 30.7 38 762-799 543-580 (697)
127 COG5236 Uncharacterized conser 96.2 0.0027 5.8E-08 70.8 2.3 48 1050-1098 58-111 (493)
128 PF00261 Tropomyosin: Tropomyo 96.2 0.4 8.6E-06 53.1 19.4 24 821-844 198-221 (237)
129 KOG0994 Extracellular matrix g 96.1 6.1 0.00013 51.2 30.4 20 404-423 1176-1195(1758)
130 PF08647 BRE1: BRE1 E3 ubiquit 96.1 0.057 1.2E-06 51.3 10.6 53 790-842 1-53 (96)
131 KOG0978 E3 ubiquitin ligase in 96.0 1.4 3.1E-05 55.1 24.6 173 650-837 427-618 (698)
132 PF09730 BicD: Microtubule-ass 96.0 7.2 0.00016 49.5 33.5 173 757-947 257-460 (717)
133 PF14835 zf-RING_6: zf-RING of 95.9 0.0039 8.4E-08 54.1 1.8 39 1055-1094 9-50 (65)
134 KOG0963 Transcription factor/C 95.9 4.1 8.9E-05 50.0 27.1 119 709-837 190-309 (629)
135 KOG1029 Endocytic adaptor prot 95.9 2.5 5.4E-05 52.6 25.2 16 198-213 44-59 (1118)
136 KOG0964 Structural maintenance 95.9 6.4 0.00014 50.5 29.2 22 651-672 228-249 (1200)
137 TIGR03007 pepcterm_ChnLen poly 95.8 1.2 2.5E-05 54.5 23.5 202 609-835 163-377 (498)
138 COG5152 Uncharacterized conser 95.8 0.0022 4.8E-08 66.5 -0.1 52 1048-1100 191-246 (259)
139 KOG2177 Predicted E3 ubiquitin 95.8 0.0026 5.6E-08 70.6 0.3 39 1053-1092 13-55 (386)
140 PF05557 MAD: Mitotic checkpoi 95.7 0.0028 6.1E-08 80.7 0.0 67 759-850 259-328 (722)
141 KOG1813 Predicted E3 ubiquitin 95.7 0.0027 5.8E-08 70.1 -0.3 47 1051-1098 239-289 (313)
142 COG5540 RING-finger-containing 95.6 0.0061 1.3E-07 67.3 2.1 41 1054-1095 324-372 (374)
143 PRK04778 septation ring format 95.6 4.9 0.00011 50.3 27.7 49 787-835 350-398 (569)
144 KOG1029 Endocytic adaptor prot 95.6 9.4 0.0002 47.8 30.8 45 755-799 470-514 (1118)
145 PRK09039 hypothetical protein; 95.6 0.99 2.1E-05 52.7 20.1 62 767-828 126-187 (343)
146 KOG0999 Microtubule-associated 95.5 7 0.00015 47.1 26.5 23 607-629 8-30 (772)
147 KOG0964 Structural maintenance 95.5 6.3 0.00014 50.5 27.4 51 688-738 231-281 (1200)
148 KOG0250 DNA repair protein RAD 95.5 3.9 8.4E-05 53.1 26.1 54 685-738 300-353 (1074)
149 KOG4593 Mitotic checkpoint pro 95.5 9.9 0.00021 47.4 30.6 33 757-789 237-269 (716)
150 KOG0980 Actin-binding protein 95.4 5.2 0.00011 50.8 26.1 101 709-830 446-546 (980)
151 PF05622 HOOK: HOOK protein; 95.4 0.0041 8.8E-08 79.1 0.0 89 649-738 328-421 (713)
152 PF14915 CCDC144C: CCDC144C pr 95.4 3.4 7.3E-05 46.6 22.1 186 614-847 63-248 (305)
153 PF06818 Fez1: Fez1; InterPro 95.3 1.9 4E-05 46.4 19.3 136 688-837 11-155 (202)
154 KOG0239 Kinesin (KAR3 subfamil 95.2 0.015 3.3E-07 72.7 4.1 91 137-242 23-113 (670)
155 PF15066 CAGE1: Cancer-associa 95.2 2.9 6.2E-05 49.5 21.8 178 710-938 326-507 (527)
156 KOG4360 Uncharacterized coiled 95.2 2.4 5.2E-05 50.6 21.3 28 710-737 161-188 (596)
157 PRK11281 hypothetical protein; 95.2 3.2 7E-05 55.3 25.1 43 813-855 292-334 (1113)
158 PF05667 DUF812: Protein of un 95.2 8.3 0.00018 48.3 27.4 53 686-738 425-477 (594)
159 PF00038 Filament: Intermediat 95.1 8 0.00017 44.3 33.2 86 648-738 20-112 (312)
160 PRK09039 hypothetical protein; 95.1 0.77 1.7E-05 53.6 17.4 121 607-738 46-167 (343)
161 KOG0249 LAR-interacting protei 95.1 2.5 5.5E-05 52.2 21.7 68 645-718 55-122 (916)
162 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 3.7 7.9E-05 41.4 19.9 71 774-844 20-90 (132)
163 PF04849 HAP1_N: HAP1 N-termin 94.9 9.1 0.0002 43.7 26.1 28 708-735 97-124 (306)
164 PRK10929 putative mechanosensi 94.8 8.1 0.00018 51.5 27.1 42 814-855 273-314 (1109)
165 COG4942 Membrane-bound metallo 94.7 12 0.00027 44.5 27.3 48 896-943 200-247 (420)
166 PF12678 zf-rbx1: RING-H2 zinc 94.7 0.022 4.8E-07 51.3 2.6 36 1055-1091 21-73 (73)
167 COG5243 HRD1 HRD ubiquitin lig 94.7 0.015 3.2E-07 65.8 1.7 43 1051-1094 285-344 (491)
168 PRK11281 hypothetical protein; 94.6 24 0.00053 47.3 32.4 92 647-738 81-179 (1113)
169 KOG0018 Structural maintenance 94.6 20 0.00043 46.8 28.4 144 650-798 205-351 (1141)
170 PF09787 Golgin_A5: Golgin sub 94.5 16 0.00035 45.0 29.4 37 918-954 346-382 (511)
171 PF15619 Lebercilin: Ciliary p 94.4 8.7 0.00019 41.3 22.4 90 646-736 19-110 (194)
172 PF12718 Tropomyosin_1: Tropom 94.3 5.2 0.00011 40.9 18.9 66 773-838 75-140 (143)
173 PF09789 DUF2353: Uncharacteri 94.3 13 0.00029 42.8 26.2 74 773-846 135-222 (319)
174 PF05622 HOOK: HOOK protein; 94.2 0.013 2.8E-07 74.7 0.0 38 768-805 322-359 (713)
175 KOG4360 Uncharacterized coiled 94.2 2 4.3E-05 51.3 17.5 137 591-738 81-242 (596)
176 PF07058 Myosin_HC-like: Myosi 94.2 1.3 2.9E-05 49.6 15.2 131 684-850 4-144 (351)
177 KOG4687 Uncharacterized coiled 94.2 6.4 0.00014 43.6 20.0 99 821-943 105-204 (389)
178 COG1340 Uncharacterized archae 94.1 13 0.00029 42.2 26.0 23 815-837 223-245 (294)
179 COG4372 Uncharacterized protei 94.1 15 0.00032 42.8 27.7 118 604-738 71-188 (499)
180 PF06818 Fez1: Fez1; InterPro 94.1 4.3 9.2E-05 43.7 18.3 98 606-734 9-106 (202)
181 KOG1853 LIS1-interacting prote 94.0 4 8.7E-05 44.7 18.0 48 773-838 135-182 (333)
182 KOG4673 Transcription factor T 94.0 21 0.00046 44.3 29.8 20 607-626 423-442 (961)
183 COG1579 Zn-ribbon protein, pos 94.0 7.2 0.00016 43.2 20.5 55 684-738 28-82 (239)
184 PF05667 DUF812: Protein of un 93.9 20 0.00044 45.0 26.7 21 647-667 329-349 (594)
185 KOG0802 E3 ubiquitin ligase [P 93.9 0.02 4.4E-07 70.6 0.8 41 1053-1094 291-340 (543)
186 KOG2113 Predicted RNA binding 93.8 0.046 1E-06 60.7 3.3 53 1048-1100 338-392 (394)
187 PF05483 SCP-1: Synaptonemal c 93.8 24 0.00052 44.0 30.9 46 610-659 373-418 (786)
188 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 7.2 0.00016 39.3 18.6 30 709-738 60-89 (132)
189 PF06785 UPF0242: Uncharacteri 93.7 6.4 0.00014 44.8 19.4 58 785-842 99-156 (401)
190 KOG4159 Predicted E3 ubiquitin 93.7 0.026 5.6E-07 66.3 1.2 45 1051-1096 82-130 (398)
191 KOG2879 Predicted E3 ubiquitin 93.6 0.04 8.7E-07 60.5 2.4 43 1052-1095 238-287 (298)
192 TIGR01843 type_I_hlyD type I s 93.6 9.7 0.00021 45.1 22.8 26 709-734 159-184 (423)
193 PF04564 U-box: U-box domain; 93.6 0.038 8.3E-07 49.7 1.9 44 1052-1096 3-51 (73)
194 PRK10929 putative mechanosensi 93.5 38 0.00082 45.5 31.0 24 647-670 66-89 (1109)
195 KOG0946 ER-Golgi vesicle-tethe 93.3 21 0.00046 45.2 24.7 25 714-738 736-760 (970)
196 KOG0982 Centrosomal protein Nu 93.3 14 0.0003 43.5 21.8 34 705-738 294-327 (502)
197 TIGR00634 recN DNA repair prot 93.3 6.2 0.00013 49.3 21.1 72 757-843 301-376 (563)
198 PF00308 Bac_DnaA: Bacterial d 93.3 0.037 8.1E-07 60.3 1.5 50 140-192 3-52 (219)
199 PF15619 Lebercilin: Ciliary p 93.2 14 0.0003 39.8 22.3 27 710-736 14-40 (194)
200 COG3096 MukB Uncharacterized p 93.2 29 0.00063 43.4 25.3 54 685-738 346-399 (1480)
201 PF08614 ATG16: Autophagy prot 93.2 1 2.2E-05 48.2 12.4 46 774-840 140-185 (194)
202 COG5185 HEC1 Protein involved 93.2 24 0.00051 42.2 23.7 85 648-735 332-420 (622)
203 KOG0311 Predicted E3 ubiquitin 93.1 0.015 3.2E-07 65.8 -2.0 42 1055-1097 45-92 (381)
204 PRK01156 chromosome segregatio 92.8 43 0.00093 44.3 37.4 16 176-191 25-40 (895)
205 PF04641 Rtf2: Rtf2 RING-finge 92.8 0.068 1.5E-06 59.9 2.7 45 1051-1096 111-162 (260)
206 TIGR03017 EpsF chain length de 92.8 22 0.00048 42.8 24.3 61 609-669 173-238 (444)
207 PF12325 TMF_TATA_bd: TATA ele 92.7 4.1 9E-05 40.4 14.6 22 648-669 18-39 (120)
208 KOG0962 DNA repair protein RAD 92.4 53 0.0012 44.3 30.9 68 782-850 882-950 (1294)
209 PF01576 Myosin_tail_1: Myosin 92.4 0.038 8.3E-07 71.6 0.0 54 609-669 470-523 (859)
210 COG0556 UvrB Helicase subunit 92.2 0.14 3.1E-06 61.2 4.3 89 141-234 4-100 (663)
211 KOG4628 Predicted E3 ubiquitin 92.1 0.073 1.6E-06 61.2 1.8 42 1054-1096 230-279 (348)
212 PRK06893 DNA replication initi 91.9 0.15 3.3E-06 55.9 4.0 48 139-192 10-57 (229)
213 KOG2129 Uncharacterized conser 91.8 32 0.0007 40.5 22.5 74 769-842 199-275 (552)
214 PF06785 UPF0242: Uncharacteri 91.8 13 0.00028 42.5 18.5 144 651-835 73-223 (401)
215 KOG0249 LAR-interacting protei 91.7 5.8 0.00013 49.2 16.9 75 653-738 112-186 (916)
216 PRK14086 dnaA chromosomal repl 91.7 1.3 2.9E-05 55.1 12.1 50 140-192 283-332 (617)
217 PRK06620 hypothetical protein; 91.7 0.12 2.6E-06 56.2 2.8 51 138-192 9-62 (214)
218 PF01576 Myosin_tail_1: Myosin 91.6 0.053 1.1E-06 70.4 0.0 79 772-850 272-351 (859)
219 KOG0828 Predicted E3 ubiquitin 91.5 0.052 1.1E-06 63.6 -0.2 41 1054-1095 572-634 (636)
220 KOG0999 Microtubule-associated 91.5 41 0.00088 41.0 27.1 26 713-738 48-73 (772)
221 KOG1003 Actin filament-coating 91.3 13 0.00029 39.6 17.1 44 695-738 82-125 (205)
222 PF14662 CCDC155: Coiled-coil 91.3 23 0.0005 37.9 23.6 103 608-738 9-111 (193)
223 PF14988 DUF4515: Domain of un 91.2 26 0.00056 38.2 21.1 19 817-835 153-171 (206)
224 COG2804 PulE Type II secretory 91.2 0.37 8E-06 58.0 6.4 32 161-192 245-276 (500)
225 TIGR01005 eps_transp_fam exopo 91.1 32 0.00069 44.6 24.4 89 645-738 200-304 (754)
226 KOG0825 PHD Zn-finger protein 91.1 0.052 1.1E-06 66.5 -0.7 45 1054-1099 124-175 (1134)
227 KOG1001 Helicase-like transcri 91.0 0.075 1.6E-06 66.7 0.5 41 1054-1096 455-501 (674)
228 KOG0018 Structural maintenance 91.0 65 0.0014 42.4 27.0 47 692-738 225-271 (1141)
229 KOG0979 Structural maintenance 90.9 15 0.00032 47.6 19.9 30 770-799 240-269 (1072)
230 PF13851 GAS: Growth-arrest sp 90.9 27 0.00058 37.9 19.9 113 707-850 54-166 (201)
231 PF09789 DUF2353: Uncharacteri 90.9 20 0.00044 41.4 19.5 133 613-746 25-185 (319)
232 COG3883 Uncharacterized protei 90.9 16 0.00034 41.1 18.1 70 765-834 149-225 (265)
233 PF10168 Nup88: Nuclear pore c 90.9 14 0.0003 47.4 20.2 74 709-785 640-713 (717)
234 PF05483 SCP-1: Synaptonemal c 90.8 53 0.0012 41.2 31.1 50 689-739 407-460 (786)
235 PF10212 TTKRSYEDQ: Predicted 90.8 8.3 0.00018 46.8 17.0 97 776-876 418-514 (518)
236 PF15066 CAGE1: Cancer-associa 90.8 43 0.00094 40.1 23.3 180 628-837 317-516 (527)
237 PF12718 Tropomyosin_1: Tropom 90.6 22 0.00048 36.4 18.7 32 707-738 20-51 (143)
238 COG3883 Uncharacterized protei 90.6 19 0.00042 40.4 18.6 155 765-941 32-197 (265)
239 TIGR03007 pepcterm_ChnLen poly 90.5 29 0.00064 42.4 22.3 31 687-717 204-234 (498)
240 TIGR01005 eps_transp_fam exopo 90.5 33 0.00071 44.4 23.7 61 609-669 196-260 (754)
241 PF03148 Tektin: Tektin family 90.4 23 0.00049 42.2 20.4 128 686-844 232-369 (384)
242 PF08172 CASP_C: CASP C termin 90.0 4.8 0.0001 44.9 13.4 46 771-837 86-131 (248)
243 KOG1039 Predicted E3 ubiquitin 89.9 0.14 3E-06 59.2 1.4 46 1053-1099 161-225 (344)
244 PF06160 EzrA: Septation ring 89.9 63 0.0014 40.5 27.0 37 911-947 456-492 (560)
245 TIGR03185 DNA_S_dndD DNA sulfu 89.8 68 0.0015 40.9 36.7 81 615-698 231-311 (650)
246 PF08317 Spc7: Spc7 kinetochor 89.8 45 0.00098 38.8 25.8 98 692-799 154-251 (325)
247 PF07111 HCR: Alpha helical co 89.8 66 0.0014 40.6 30.7 62 608-669 198-265 (739)
248 PRK10884 SH3 domain-containing 89.6 4.1 8.8E-05 44.3 12.2 20 780-799 134-153 (206)
249 PRK10884 SH3 domain-containing 89.6 3.5 7.5E-05 44.8 11.6 32 707-738 138-169 (206)
250 COG2805 PilT Tfp pilus assembl 89.6 0.2 4.4E-06 56.4 2.3 32 161-192 112-143 (353)
251 KOG4807 F-actin binding protei 89.6 48 0.001 38.7 25.2 76 814-893 429-506 (593)
252 TIGR01000 bacteriocin_acc bact 89.5 58 0.0013 39.6 23.8 27 712-738 169-195 (457)
253 PF12861 zf-Apc11: Anaphase-pr 89.3 0.22 4.7E-06 46.1 1.9 30 1065-1095 46-82 (85)
254 KOG1853 LIS1-interacting prote 89.2 8.6 0.00019 42.2 14.0 39 901-943 142-180 (333)
255 PF13514 AAA_27: AAA domain 89.2 1E+02 0.0022 41.9 31.7 92 707-800 679-772 (1111)
256 PRK10869 recombination and rep 88.9 44 0.00096 41.7 22.1 64 770-844 305-372 (553)
257 KOG1814 Predicted E3 ubiquitin 88.5 0.16 3.4E-06 58.9 0.5 28 1054-1082 185-215 (445)
258 KOG4302 Microtubule-associated 88.4 31 0.00067 43.5 19.9 80 771-850 110-190 (660)
259 PRK06835 DNA replication prote 88.4 0.19 4E-06 58.3 1.0 36 156-193 167-202 (329)
260 KOG3002 Zn finger protein [Gen 88.3 0.23 4.9E-06 56.6 1.6 40 1055-1096 50-92 (299)
261 PF09728 Taxilin: Myosin-like 88.2 52 0.0011 38.0 20.6 218 611-834 71-300 (309)
262 KOG0995 Centromere-associated 88.2 75 0.0016 39.2 35.3 92 609-704 261-356 (581)
263 PRK12377 putative replication 88.1 0.38 8.2E-06 53.6 3.2 51 141-193 70-120 (248)
264 KOG0243 Kinesin-like protein [ 88.0 66 0.0014 42.5 22.8 86 653-738 404-492 (1041)
265 TIGR00634 recN DNA repair prot 87.9 37 0.0008 42.5 20.7 22 612-633 159-180 (563)
266 PRK08116 hypothetical protein; 87.9 0.31 6.7E-06 54.9 2.3 51 140-192 80-132 (268)
267 PRK05642 DNA replication initi 87.7 0.47 1E-05 52.3 3.6 48 138-192 12-63 (234)
268 PRK04778 septation ring format 87.4 90 0.0019 39.2 33.6 61 775-842 279-339 (569)
269 PF10481 CENP-F_N: Cenp-F N-te 87.4 19 0.00041 40.2 15.3 152 645-798 24-189 (307)
270 KOG3039 Uncharacterized conser 87.4 0.34 7.3E-06 52.5 2.1 43 1053-1096 221-271 (303)
271 PRK08084 DNA replication initi 87.3 0.51 1.1E-05 52.0 3.6 49 138-192 15-63 (235)
272 COG0497 RecN ATPase involved i 87.3 51 0.0011 40.9 20.6 54 779-843 319-372 (557)
273 TIGR02680 conserved hypothetic 87.2 1.5E+02 0.0031 41.4 28.2 62 608-669 750-816 (1353)
274 PRK06526 transposase; Provisio 87.0 0.29 6.2E-06 54.7 1.4 45 144-193 73-117 (254)
275 PLN02939 transferase, transfer 86.9 80 0.0017 41.8 23.0 88 648-738 158-249 (977)
276 PRK14088 dnaA chromosomal repl 86.8 0.38 8.3E-06 58.0 2.4 50 139-192 99-148 (440)
277 PF10473 CENP-F_leu_zip: Leuci 86.8 40 0.00086 34.5 17.3 81 767-847 6-86 (140)
278 PF05911 DUF869: Plant protein 86.8 1.1E+02 0.0024 39.7 31.3 44 692-735 90-133 (769)
279 PF05557 MAD: Mitotic checkpoi 86.7 0.2 4.4E-06 64.1 0.0 10 867-876 268-277 (722)
280 PF12325 TMF_TATA_bd: TATA ele 86.6 25 0.00055 35.0 14.5 42 687-735 16-57 (120)
281 PRK14087 dnaA chromosomal repl 86.6 0.41 8.8E-06 57.9 2.5 49 141-192 111-159 (450)
282 TIGR01843 type_I_hlyD type I s 86.6 76 0.0016 37.5 24.0 29 710-738 146-174 (423)
283 PRK09087 hypothetical protein; 86.5 0.51 1.1E-05 51.8 3.0 50 137-192 13-62 (226)
284 KOG4807 F-actin binding protei 86.1 76 0.0017 37.2 20.5 75 760-844 508-582 (593)
285 TIGR00362 DnaA chromosomal rep 86.0 0.5 1.1E-05 56.2 2.8 50 140-192 105-154 (405)
286 PF00769 ERM: Ezrin/radixin/mo 85.8 27 0.00058 39.0 16.1 30 707-736 18-47 (246)
287 PRK00149 dnaA chromosomal repl 85.4 0.54 1.2E-05 56.9 2.7 50 140-192 117-166 (450)
288 PF15035 Rootletin: Ciliary ro 85.2 57 0.0012 34.9 18.6 91 648-738 18-111 (182)
289 PF15254 CCDC14: Coiled-coil d 85.1 1.2E+02 0.0027 38.7 25.6 76 648-738 389-464 (861)
290 PRK07952 DNA replication prote 85.1 0.7 1.5E-05 51.4 3.2 51 141-193 68-118 (244)
291 PF10168 Nup88: Nuclear pore c 84.9 76 0.0016 41.0 21.3 31 98-128 123-158 (717)
292 PLN03229 acetyl-coenzyme A car 84.8 48 0.001 42.2 18.8 39 658-697 576-614 (762)
293 TIGR03420 DnaA_homol_Hda DnaA 84.8 0.79 1.7E-05 49.5 3.4 51 136-192 6-56 (226)
294 PF06005 DUF904: Protein of un 84.6 16 0.00034 33.1 11.0 26 774-799 28-53 (72)
295 PF13514 AAA_27: AAA domain 84.6 1.7E+02 0.0037 39.8 32.0 120 608-738 189-326 (1111)
296 COG4477 EzrA Negative regulato 84.2 83 0.0018 38.6 19.7 46 684-738 252-297 (570)
297 PF14197 Cep57_CLD_2: Centroso 84.1 12 0.00026 33.5 10.0 20 719-738 2-21 (69)
298 KOG4809 Rab6 GTPase-interactin 84.0 88 0.0019 38.3 19.6 225 612-919 343-570 (654)
299 PRK08903 DnaA regulatory inact 84.0 0.99 2.1E-05 49.1 3.8 52 136-192 9-60 (227)
300 KOG1002 Nucleotide excision re 83.8 0.29 6.3E-06 57.9 -0.5 41 1053-1094 536-585 (791)
301 KOG2113 Predicted RNA binding 83.6 0.47 1E-05 53.1 1.1 49 1053-1101 136-189 (394)
302 COG1340 Uncharacterized archae 83.4 91 0.002 35.7 30.9 81 645-738 40-123 (294)
303 COG0497 RecN ATPase involved i 83.2 1.3E+02 0.0028 37.6 21.3 53 757-809 321-373 (557)
304 PF13870 DUF4201: Domain of un 83.0 66 0.0014 33.9 19.7 53 686-738 48-107 (177)
305 PF08614 ATG16: Autophagy prot 82.9 16 0.00035 39.1 12.4 28 772-799 152-179 (194)
306 TIGR02928 orc1/cdc6 family rep 82.8 1.1 2.3E-05 52.3 3.7 22 171-192 37-58 (365)
307 COG1474 CDC6 Cdc6-related prot 82.8 1.5 3.3E-05 51.6 4.9 26 166-191 33-59 (366)
308 PF10481 CENP-F_N: Cenp-F N-te 82.7 89 0.0019 35.2 18.9 25 1021-1045 273-297 (307)
309 TIGR02680 conserved hypothetic 82.6 2.2E+02 0.0048 39.7 32.0 24 646-669 749-772 (1353)
310 PF09787 Golgin_A5: Golgin sub 82.6 1.4E+02 0.0029 37.1 26.3 127 709-848 215-351 (511)
311 COG2433 Uncharacterized conser 82.3 23 0.00049 43.8 14.3 29 771-799 422-450 (652)
312 PF07058 Myosin_HC-like: Myosi 82.3 56 0.0012 37.2 16.2 130 765-943 29-159 (351)
313 PRK08181 transposase; Validate 81.9 1.2 2.5E-05 50.4 3.4 45 144-193 80-125 (269)
314 COG0593 DnaA ATPase involved i 81.9 1 2.3E-05 53.4 3.1 56 390-452 236-291 (408)
315 PRK15422 septal ring assembly 81.8 18 0.00039 33.1 10.1 25 713-737 9-33 (79)
316 PRK00411 cdc6 cell division co 81.7 1.3 2.7E-05 52.3 3.8 22 171-192 52-73 (394)
317 PRK08939 primosomal protein Dn 81.7 0.75 1.6E-05 52.9 1.8 51 142-193 124-175 (306)
318 PRK08727 hypothetical protein; 81.6 1.1 2.5E-05 49.2 3.1 47 138-192 12-59 (233)
319 PF04851 ResIII: Type III rest 81.3 0.89 1.9E-05 46.6 2.0 29 164-192 14-43 (184)
320 PF10186 Atg14: UV radiation r 81.2 80 0.0017 35.6 18.0 25 818-842 124-148 (302)
321 PF04012 PspA_IM30: PspA/IM30 80.9 90 0.0019 34.0 20.5 92 646-738 51-142 (221)
322 PF03962 Mnd1: Mnd1 family; I 80.8 27 0.00058 37.5 13.0 102 707-854 61-166 (188)
323 PF04111 APG6: Autophagy prote 80.0 18 0.0004 41.8 12.3 29 710-738 59-87 (314)
324 KOG0804 Cytoplasmic Zn-finger 80.0 48 0.001 39.6 15.4 44 695-738 348-391 (493)
325 PF04912 Dynamitin: Dynamitin 80.0 88 0.0019 37.3 18.4 39 815-853 324-362 (388)
326 PF10473 CENP-F_leu_zip: Leuci 79.9 76 0.0016 32.5 18.1 36 701-736 45-80 (140)
327 PLN00020 ribulose bisphosphate 79.9 3.4 7.4E-05 48.5 6.3 75 139-232 109-187 (413)
328 PRK10869 recombination and rep 79.8 1.5E+02 0.0033 37.1 21.1 46 757-802 320-365 (553)
329 PF05911 DUF869: Plant protein 79.8 2E+02 0.0044 37.4 22.5 108 707-842 588-695 (769)
330 KOG1962 B-cell receptor-associ 79.7 9.1 0.0002 41.7 9.0 54 707-795 157-210 (216)
331 PF04111 APG6: Autophagy prote 79.2 18 0.00038 41.9 11.8 16 779-794 65-80 (314)
332 KOG2991 Splicing regulator [RN 79.1 1.1E+02 0.0024 34.0 17.2 134 782-948 133-278 (330)
333 KOG2932 E3 ubiquitin ligase in 79.1 0.68 1.5E-05 51.8 0.3 41 1054-1096 91-135 (389)
334 PF15294 Leu_zip: Leucine zipp 78.8 1E+02 0.0022 35.1 17.0 62 774-835 149-212 (278)
335 cd00009 AAA The AAA+ (ATPases 78.8 1.5 3.3E-05 42.4 2.7 28 165-192 10-37 (151)
336 KOG3842 Adaptor protein Pellin 78.1 1.2 2.5E-05 50.1 1.7 37 256-299 63-99 (429)
337 PF06156 DUF972: Protein of un 77.7 8.2 0.00018 37.6 7.2 41 759-799 10-50 (107)
338 PF04156 IncA: IncA protein; 77.4 93 0.002 32.9 16.0 23 776-798 128-150 (191)
339 KOG2991 Splicing regulator [RN 77.1 1.3E+02 0.0028 33.6 18.6 43 757-799 236-278 (330)
340 PF10267 Tmemb_cc2: Predicted 76.9 1.7E+02 0.0038 35.0 29.8 21 432-452 4-24 (395)
341 KOG0297 TNF receptor-associate 76.9 1.2 2.5E-05 53.0 1.4 44 1053-1097 21-69 (391)
342 PF10186 Atg14: UV radiation r 76.8 1.4E+02 0.0029 33.7 18.6 12 946-957 204-215 (302)
343 PTZ00454 26S protease regulato 76.6 1.7 3.6E-05 51.9 2.6 90 102-191 89-196 (398)
344 PRK12704 phosphodiesterase; Pr 76.6 78 0.0017 39.3 17.0 41 696-736 98-138 (520)
345 PRK10246 exonuclease subunit S 76.6 2.9E+02 0.0063 37.5 35.4 47 801-847 712-758 (1047)
346 PF06160 EzrA: Septation ring 76.5 2.1E+02 0.0046 35.9 32.3 45 911-955 363-407 (560)
347 PF10226 DUF2216: Uncharacteri 76.4 60 0.0013 34.7 13.4 51 758-808 42-92 (195)
348 KOG4445 Uncharacterized conser 76.3 1 2.2E-05 50.3 0.7 25 1055-1080 117-144 (368)
349 PF08317 Spc7: Spc7 kinetochor 76.3 1.6E+02 0.0034 34.3 27.6 40 903-942 248-291 (325)
350 PF09738 DUF2051: Double stran 76.3 60 0.0013 37.4 14.8 132 688-840 78-246 (302)
351 PRK03992 proteasome-activating 75.8 2.3 4.9E-05 50.6 3.4 51 141-191 127-182 (389)
352 COG2433 Uncharacterized conser 75.8 46 0.001 41.2 14.1 49 773-842 417-465 (652)
353 PF14992 TMCO5: TMCO5 family 75.4 1E+02 0.0022 35.0 15.9 53 775-827 113-165 (280)
354 PRK06921 hypothetical protein; 75.2 2.3 4.9E-05 47.9 3.1 36 157-193 98-136 (266)
355 PF05290 Baculo_IE-1: Baculovi 75.2 2.2 4.7E-05 42.7 2.5 59 1038-1097 65-134 (140)
356 PRK13169 DNA replication intia 75.1 11 0.00023 37.0 7.2 41 759-799 10-50 (110)
357 smart00787 Spc7 Spc7 kinetocho 75.0 1.7E+02 0.0037 34.0 23.1 36 604-639 60-95 (312)
358 PTZ00361 26 proteosome regulat 75.0 3.3 7.1E-05 50.0 4.6 89 103-191 128-234 (438)
359 KOG0826 Predicted E3 ubiquitin 75.0 0.86 1.9E-05 51.6 -0.3 50 1052-1101 299-354 (357)
360 PF12329 TMF_DNA_bd: TATA elem 75.0 33 0.00072 31.2 9.9 26 713-738 3-28 (74)
361 KOG4005 Transcription factor X 74.6 14 0.0003 40.4 8.4 57 774-851 93-149 (292)
362 cd00046 DEXDc DEAD-like helica 74.5 1.3 2.9E-05 42.3 0.9 17 177-193 3-19 (144)
363 PF10235 Cript: Microtubule-as 74.3 1.7 3.7E-05 40.7 1.5 38 1053-1096 44-81 (90)
364 PRK10436 hypothetical protein; 74.2 1.7 3.7E-05 52.8 1.8 28 165-192 209-236 (462)
365 PF10211 Ax_dynein_light: Axon 74.0 33 0.00072 36.8 11.3 64 774-837 123-187 (189)
366 PF13245 AAA_19: Part of AAA d 73.9 1.9 4.1E-05 39.2 1.7 26 166-192 3-28 (76)
367 PF13870 DUF4201: Domain of un 73.8 1.2E+02 0.0027 31.8 21.1 69 773-848 44-112 (177)
368 PF10272 Tmpp129: Putative tra 73.5 4.2 9E-05 47.6 4.7 45 1025-1069 242-287 (358)
369 COG5175 MOT2 Transcriptional r 73.4 1.2 2.6E-05 50.3 0.3 42 1054-1096 15-65 (480)
370 TIGR02538 type_IV_pilB type IV 73.3 1.8 4E-05 53.9 2.0 28 165-192 307-334 (564)
371 PRK12422 chromosomal replicati 73.3 2.4 5.2E-05 51.3 2.9 51 139-192 105-159 (445)
372 PTZ00112 origin recognition co 73.2 3.1 6.6E-05 53.6 3.7 22 171-192 778-799 (1164)
373 PF00769 ERM: Ezrin/radixin/mo 73.0 80 0.0017 35.3 14.5 72 771-842 47-118 (246)
374 PF05010 TACC: Transforming ac 72.9 1.5E+02 0.0032 32.4 23.2 36 808-843 156-191 (207)
375 TIGR02533 type_II_gspE general 72.7 2.2 4.7E-05 52.2 2.3 28 165-192 233-260 (486)
376 KOG0989 Replication factor C, 72.6 2.9 6.2E-05 47.7 3.0 35 158-192 40-75 (346)
377 PF10146 zf-C4H2: Zinc finger- 72.6 89 0.0019 34.7 14.4 20 1075-1094 195-218 (230)
378 PRK15422 septal ring assembly 72.5 37 0.00081 31.2 9.3 59 758-837 5-63 (79)
379 PF06005 DUF904: Protein of un 72.4 56 0.0012 29.7 10.6 26 774-799 7-32 (72)
380 KOG4687 Uncharacterized coiled 71.5 1E+02 0.0023 34.5 14.3 102 722-840 9-110 (389)
381 TIGR01242 26Sp45 26S proteasom 71.5 3.4 7.3E-05 48.5 3.5 51 141-191 118-173 (364)
382 TIGR03319 YmdA_YtgF conserved 71.4 1.5E+02 0.0032 36.9 17.5 166 613-817 32-197 (514)
383 KOG0804 Cytoplasmic Zn-finger 71.4 1.5E+02 0.0033 35.7 16.4 73 646-738 347-419 (493)
384 PF10498 IFT57: Intra-flagella 71.3 26 0.00057 41.3 10.6 128 609-736 222-356 (359)
385 PF00270 DEAD: DEAD/DEAH box h 71.3 2.5 5.3E-05 43.0 2.0 26 165-192 7-32 (169)
386 PF10498 IFT57: Intra-flagella 71.1 1.2E+02 0.0025 36.0 15.9 28 645-672 240-267 (359)
387 TIGR03185 DNA_S_dndD DNA sulfu 71.0 3E+02 0.0066 35.1 34.1 79 644-738 207-285 (650)
388 PF13401 AAA_22: AAA domain; P 70.6 1.5 3.3E-05 42.7 0.3 19 174-192 4-22 (131)
389 PF00437 T2SE: Type II/IV secr 70.3 2.1 4.5E-05 47.9 1.4 19 174-192 127-145 (270)
390 COG1484 DnaC DNA replication p 70.2 3.6 7.8E-05 46.1 3.2 50 141-193 75-124 (254)
391 TIGR00631 uvrb excinuclease AB 70.1 4.2 9.1E-05 51.6 4.0 88 142-234 2-97 (655)
392 TIGR03015 pepcterm_ATPase puta 69.8 3.8 8.3E-05 45.4 3.3 25 168-192 37-61 (269)
393 COG4026 Uncharacterized protei 69.5 79 0.0017 34.5 12.5 26 774-799 138-163 (290)
394 PRK09183 transposase/IS protei 69.5 2.4 5.2E-05 47.5 1.6 45 144-193 77-121 (259)
395 TIGR03017 EpsF chain length de 69.4 2.6E+02 0.0056 33.7 21.6 19 651-669 176-194 (444)
396 smart00382 AAA ATPases associa 69.4 2 4.4E-05 41.0 0.9 18 175-192 3-20 (148)
397 TIGR02525 plasmid_TraJ plasmid 69.4 2.8 6.1E-05 49.5 2.2 20 173-192 148-167 (372)
398 TIGR01420 pilT_fam pilus retra 69.3 2.7 5.8E-05 49.1 2.0 28 165-192 113-140 (343)
399 cd01131 PilT Pilus retraction 69.1 2.1 4.5E-05 45.9 0.9 19 174-192 1-19 (198)
400 PF11365 DUF3166: Protein of u 69.0 9.6 0.00021 36.3 5.2 42 760-801 4-45 (96)
401 PF01935 DUF87: Domain of unkn 68.6 2 4.4E-05 46.6 0.8 16 177-192 26-41 (229)
402 KOG1003 Actin filament-coating 68.6 1.8E+02 0.0038 31.5 19.7 39 778-816 46-84 (205)
403 KOG0244 Kinesin-like protein [ 68.5 1.3E+02 0.0028 39.3 16.3 141 685-835 472-619 (913)
404 PRK09841 cryptic autophosphory 68.2 52 0.0011 42.6 13.4 51 617-669 247-297 (726)
405 PF11559 ADIP: Afadin- and alp 68.2 1.5E+02 0.0032 30.4 15.7 30 709-738 53-82 (151)
406 KOG2685 Cystoskeletal protein 68.1 2.7E+02 0.0058 33.4 18.6 102 709-843 286-395 (421)
407 PRK11519 tyrosine kinase; Prov 68.1 88 0.0019 40.4 15.4 57 610-668 240-296 (719)
408 PF12761 End3: Actin cytoskele 67.8 37 0.0008 36.5 9.8 27 709-735 168-194 (195)
409 TIGR02524 dot_icm_DotB Dot/Icm 67.7 3.1 6.7E-05 49.0 2.1 20 173-192 133-152 (358)
410 PF13604 AAA_30: AAA domain; P 67.6 3.1 6.8E-05 44.5 2.0 28 165-192 9-36 (196)
411 PF07798 DUF1640: Protein of u 67.3 1.7E+02 0.0037 30.9 16.1 23 825-847 136-158 (177)
412 PF12846 AAA_10: AAA-like doma 67.1 2.3 4.9E-05 47.5 0.8 19 174-192 1-19 (304)
413 PF10146 zf-C4H2: Zinc finger- 66.8 1.9E+02 0.0041 32.1 15.5 63 774-843 35-97 (230)
414 TIGR02449 conserved hypothetic 66.8 33 0.00071 30.5 7.6 50 773-843 2-51 (65)
415 cd01129 PulE-GspE PulE/GspE Th 66.7 3.6 7.9E-05 46.3 2.3 27 166-192 72-98 (264)
416 PRK00106 hypothetical protein; 66.6 1.9E+02 0.0041 36.1 17.0 162 617-817 57-218 (535)
417 COG1222 RPT1 ATP-dependent 26S 66.5 9 0.00019 44.7 5.3 116 100-215 93-243 (406)
418 PF01695 IstB_IS21: IstB-like 66.5 3.6 7.8E-05 43.5 2.1 19 175-193 48-66 (178)
419 PF14915 CCDC144C: CCDC144C pr 66.4 2.5E+02 0.0053 32.3 27.9 77 650-742 28-104 (305)
420 COG4026 Uncharacterized protei 66.3 80 0.0017 34.5 11.8 14 821-834 192-205 (290)
421 COG5008 PilU Tfp pilus assembl 66.1 4.4 9.4E-05 45.3 2.6 31 162-192 115-145 (375)
422 PF14570 zf-RING_4: RING/Ubox 65.3 2.2 4.7E-05 35.5 0.1 38 1056-1094 1-47 (48)
423 PF07106 TBPIP: Tat binding pr 65.2 68 0.0015 33.5 11.3 26 774-799 112-137 (169)
424 PF04710 Pellino: Pellino; In 64.9 2.1 4.6E-05 49.8 0.0 9 321-329 240-248 (416)
425 PF15254 CCDC14: Coiled-coil d 64.7 63 0.0014 41.1 12.2 118 611-742 438-556 (861)
426 KOG3799 Rab3 effector RIM1 and 64.4 7.2 0.00016 38.9 3.5 24 1049-1075 61-84 (169)
427 KOG4421 Uncharacterized conser 63.9 1.7E+02 0.0037 34.1 14.5 123 710-850 489-618 (637)
428 PRK01156 chromosome segregatio 62.8 4.9E+02 0.011 34.5 36.7 21 815-835 418-438 (895)
429 PF07111 HCR: Alpha helical co 62.8 4.3E+02 0.0093 33.8 31.0 63 607-669 331-396 (739)
430 KOG4421 Uncharacterized conser 62.6 2.8E+02 0.0061 32.4 15.9 164 647-832 16-199 (637)
431 PF15035 Rootletin: Ciliary ro 62.5 2.2E+02 0.0048 30.5 18.4 98 722-840 23-122 (182)
432 KOG3476 Microtubule-associated 62.3 0.96 2.1E-05 41.5 -2.6 37 1054-1096 55-91 (100)
433 COG1842 PspA Phage shock prote 62.2 2.5E+02 0.0055 31.0 17.7 121 613-738 23-143 (225)
434 TIGR03752 conj_TIGR03752 integ 62.1 44 0.00096 40.4 10.1 32 707-738 65-96 (472)
435 KOG1962 B-cell receptor-associ 62.1 97 0.0021 34.0 11.8 14 725-738 130-143 (216)
436 PF15290 Syntaphilin: Golgi-lo 62.1 1.1E+02 0.0024 34.6 12.3 25 713-737 80-104 (305)
437 PF04012 PspA_IM30: PspA/IM30 62.1 2.4E+02 0.0052 30.7 21.7 30 806-835 84-113 (221)
438 PF07106 TBPIP: Tat binding pr 62.0 60 0.0013 33.9 10.2 26 711-736 112-137 (169)
439 PF02318 FYVE_2: FYVE-type zin 61.8 4.9 0.00011 39.6 2.0 65 1027-1092 28-102 (118)
440 PF11932 DUF3450: Protein of u 61.8 2.6E+02 0.0057 31.1 16.3 26 774-799 52-77 (251)
441 COG3074 Uncharacterized protei 61.2 1.2E+02 0.0027 27.2 10.0 19 718-736 14-32 (79)
442 PHA00729 NTP-binding motif con 60.9 6.3 0.00014 43.4 2.7 32 161-192 4-35 (226)
443 PF10367 Vps39_2: Vacuolar sor 60.8 9 0.00019 36.4 3.5 30 1052-1082 77-108 (109)
444 TIGR02782 TrbB_P P-type conjug 60.7 5.1 0.00011 45.9 2.1 28 164-192 123-150 (299)
445 PF06120 Phage_HK97_TLTM: Tail 60.7 1.7E+02 0.0037 33.8 14.0 30 709-738 142-171 (301)
446 PF01637 Arch_ATPase: Archaeal 60.7 4.1 8.8E-05 43.4 1.2 29 164-192 10-38 (234)
447 PF09755 DUF2046: Uncharacteri 60.7 3.2E+02 0.0069 31.7 30.4 20 818-837 183-202 (310)
448 PF08581 Tup_N: Tup N-terminal 60.6 1.4E+02 0.0031 27.6 11.4 60 713-793 2-61 (79)
449 PF05970 PIF1: PIF1-like helic 60.6 5.5 0.00012 46.9 2.4 37 151-191 3-39 (364)
450 COG5219 Uncharacterized conser 60.4 3.8 8.2E-05 52.1 1.0 32 367-398 892-923 (1525)
451 PF12777 MT: Microtubule-bindi 60.2 50 0.0011 38.7 10.2 62 774-835 252-313 (344)
452 PHA02544 44 clamp loader, smal 60.1 6 0.00013 45.1 2.6 22 171-192 39-61 (316)
453 KOG4677 Golgi integral membran 59.8 3.9E+02 0.0084 32.4 18.6 47 692-738 307-353 (554)
454 PF00004 AAA: ATPase family as 59.5 3.6 7.8E-05 39.8 0.5 15 177-191 1-15 (132)
455 KOG4302 Microtubule-associated 59.3 4.9E+02 0.011 33.4 23.2 35 628-669 50-84 (660)
456 PF00448 SRP54: SRP54-type pro 59.3 3.7 8E-05 44.1 0.6 17 176-192 3-19 (196)
457 KOG0727 26S proteasome regulat 59.2 11 0.00023 42.0 4.0 74 142-215 152-247 (408)
458 KOG1734 Predicted RING-contain 59.1 3.7 8E-05 45.4 0.6 44 1052-1096 223-282 (328)
459 KOG1924 RhoA GTPase effector D 59.0 37 0.0008 43.0 8.8 7 498-504 819-825 (1102)
460 PRK12402 replication factor C 58.9 6.7 0.00015 45.0 2.7 43 142-192 12-54 (337)
461 COG1201 Lhr Lhr-like helicases 58.8 11 0.00025 48.5 4.8 56 165-231 30-86 (814)
462 KOG0288 WD40 repeat protein Ti 58.7 2E+02 0.0043 34.4 14.1 33 769-801 39-71 (459)
463 PF14197 Cep57_CLD_2: Centroso 58.2 1.2E+02 0.0026 27.3 9.8 17 821-837 48-64 (69)
464 PF14992 TMCO5: TMCO5 family 58.1 3.2E+02 0.0069 31.3 15.3 27 648-674 20-46 (280)
465 PRK13894 conjugal transfer ATP 57.9 5.5 0.00012 46.1 1.7 28 164-192 139-166 (319)
466 PRK15178 Vi polysaccharide exp 57.8 4.3E+02 0.0092 32.2 18.5 85 646-738 242-337 (434)
467 PF13086 AAA_11: AAA domain; P 57.6 5.7 0.00012 42.3 1.7 26 166-192 10-35 (236)
468 PF13851 GAS: Growth-arrest sp 57.4 2.8E+02 0.0061 30.0 20.7 32 707-738 85-116 (201)
469 smart00053 DYNc Dynamin, GTPas 57.1 19 0.00041 40.1 5.7 53 263-330 85-137 (240)
470 KOG1705 Uncharacterized conser 57.0 3.7 7.9E-05 38.2 0.1 33 1055-1092 29-63 (110)
471 PRK10361 DNA recombination pro 56.8 4.6E+02 0.01 32.3 23.2 22 814-835 166-187 (475)
472 PF06548 Kinesin-related: Kine 56.3 4.4E+02 0.0096 32.0 24.4 35 808-842 339-373 (488)
473 PF13479 AAA_24: AAA domain 56.3 5.4 0.00012 43.3 1.2 20 174-193 3-22 (213)
474 smart00487 DEXDc DEAD-like hel 56.0 7.9 0.00017 39.5 2.4 26 166-192 17-42 (201)
475 PRK12723 flagellar biosynthesi 56.0 9.9 0.00021 45.2 3.5 19 174-192 174-192 (388)
476 PF03854 zf-P11: P-11 zinc fin 55.8 4.3 9.4E-05 33.5 0.3 43 1055-1099 4-50 (50)
477 PF11932 DUF3450: Protein of u 55.7 2.3E+02 0.0051 31.5 14.1 74 712-799 39-112 (251)
478 KOG1428 Inhibitor of type V ad 55.7 4.5 9.7E-05 53.2 0.6 44 1053-1097 3486-3546(3738)
479 KOG0992 Uncharacterized conser 55.6 4.8E+02 0.01 32.1 31.2 182 647-844 232-420 (613)
480 TIGR01010 BexC_CtrB_KpsE polys 55.6 1.4E+02 0.0031 35.0 13.0 58 647-704 171-231 (362)
481 PF02562 PhoH: PhoH-like prote 55.4 8 0.00017 42.0 2.4 19 173-191 18-36 (205)
482 KOG0962 DNA repair protein RAD 55.2 7.4E+02 0.016 34.2 29.2 24 681-704 820-843 (1294)
483 KOG3564 GTPase-activating prot 55.1 60 0.0013 39.1 9.4 79 770-855 27-105 (604)
484 TIGR03752 conj_TIGR03752 integ 55.1 90 0.0019 37.9 11.0 67 770-836 65-132 (472)
485 KOG2660 Locus-specific chromos 55.0 3.1 6.6E-05 47.5 -0.9 44 1055-1099 17-65 (331)
486 KOG4593 Mitotic checkpoint pro 54.9 5.7E+02 0.012 32.7 33.1 114 708-835 384-497 (716)
487 PF13207 AAA_17: AAA domain; P 54.8 5.2 0.00011 38.5 0.8 16 176-191 1-16 (121)
488 PF05673 DUF815: Protein of un 54.6 3.7 7.9E-05 45.7 -0.4 125 141-299 23-155 (249)
489 COG5220 TFB3 Cdk activating ki 54.5 3 6.5E-05 45.3 -1.0 38 1055-1093 15-62 (314)
490 PF09738 DUF2051: Double stran 54.1 1E+02 0.0023 35.5 11.1 119 604-738 109-242 (302)
491 KOG1923 Rac1 GTPase effector F 54.1 42 0.00092 42.5 8.4 28 711-738 669-696 (830)
492 KOG4362 Transcriptional regula 54.1 6.2 0.00013 49.4 1.4 41 1055-1096 23-70 (684)
493 PF12329 TMF_DNA_bd: TATA elem 54.0 1.2E+02 0.0026 27.5 9.3 17 651-667 3-19 (74)
494 PRK13833 conjugal transfer pro 53.8 7.5 0.00016 45.1 2.0 27 165-192 136-162 (323)
495 PF00580 UvrD-helicase: UvrD/R 53.8 5.8 0.00013 44.5 1.1 21 172-192 11-31 (315)
496 TIGR03499 FlhF flagellar biosy 53.7 12 0.00026 42.5 3.5 17 176-192 196-212 (282)
497 PF04216 FdhE: Protein involve 53.6 6.1 0.00013 45.1 1.2 48 1053-1101 172-228 (290)
498 PF13166 AAA_13: AAA domain 53.5 6E+02 0.013 32.6 24.5 188 607-838 280-470 (712)
499 COG1223 Predicted ATPase (AAA+ 53.4 5.9 0.00013 44.2 1.0 15 176-190 153-167 (368)
500 cd00268 DEADc DEAD-box helicas 52.8 9.4 0.0002 40.3 2.4 26 163-190 27-52 (203)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-88 Score=819.36 Aligned_cols=401 Identities=36% Similarity=0.598 Sum_probs=343.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC-CE-EEecCC--C--CCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG-DK-IVRNEY--N--PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~-~~-~~~~~~--~--~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
...+.||+|+|||||++.+|.......++..+| .+ |.+... . -.+.|+||+||||.+.|++||+.++.|+|..|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 355679999999999999999888888877776 33 322221 1 36789999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCC--------CCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCC
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHG--------DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G--------~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~ 241 (1102)
+.|||||||||||||+||||||.| .+..+|||||++.+||+.+.... .+|.|+|||||+|||.|+|||+|.
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence 999999999999999999999999 56788999999999999998654 899999999999999999999886
Q ss_pred C---CcceEEeCC------CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC-
Q 001316 242 G---QNLRVREDA------QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE- 311 (1102)
Q Consensus 242 ~---~~l~ire~~------~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~- 311 (1102)
. ..+.+.+++ +|++|.||.+++|.++.|++.+|.+|...|++++|.||.+|||||+||+|+|........
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g 283 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG 283 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence 4 345555555 579999999999999999999999999999999999999999999999999987654433
Q ss_pred CCcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccce
Q 001316 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1102)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~ 390 (1102)
.+.++.|||+||||||||. ..+|+.+.|.+|++.||+||+|||+||+||.++. .|||||+|||||||||||||.+||+
T Consensus 284 eelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 284 EELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred hhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeE
Confidence 3557889999999999998 7789999999999999999999999999999964 5999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHH
Q 001316 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQK 470 (1102)
Q Consensus 391 ~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~~~~~~~e~~~l~~~ 470 (1102)
|||||||+..+++||++||.||.|||+|+|+|.+|..+..+.+++.|-.||.+||.+|...+....+...++.+......
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e 442 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKE 442 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999887766555666555322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 471 LEEGQVKMQSRLEEEEEAKAALMSRIQRLTKL 502 (1102)
Q Consensus 471 l~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~l 502 (1102)
...+..++++.+....++..++..++.+
T Consensus 443 ----~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 443 ----KKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334444445555555555555443
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-90 Score=815.74 Aligned_cols=377 Identities=39% Similarity=0.591 Sum_probs=335.4
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe-c-C-CCCCcceeeceecCCC-------CChhHHHhhhhHHHHHH
Q 001316 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-N-E-YNPATAYAFDRVFGPH-------ANSQEVYDVAARPVVKA 168 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~-~-~-~~~~~~f~FD~VF~~~-------~~q~~Vy~~~~~plV~~ 168 (1102)
..+|+|+||||||+.+|.....++++.+.|+++.+ + . .+....|+||++||.+ ++|..||+.++.+++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999988888888887775332 2 2 2334569999999877 57999999999999999
Q ss_pred HhcCCceeEEeeccCCCCCccccCCCC--CCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCC-CC-C
Q 001316 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD-PT-G 242 (1102)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm~G~~--~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~-~~-~ 242 (1102)
+|+|||+||||||||||||||||+|.+ +++|||||+|++||.+|... .+..|.|.|||+|||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999987 89999999999999999754 456899999999999999999999 54 5
Q ss_pred CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCC--CcEEEEE
Q 001316 243 QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFSQ 319 (1102)
Q Consensus 243 ~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~~sk 319 (1102)
..|++||+| .|+||.+|+.+.|+|+.|+..+|+.|++.|++++|+||+.|||||+||+|.+.+..+.... +..++|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 789999999 7999999999999999999999999999999999999999999999999999988654433 4678999
Q ss_pred EEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhc------CCCCCccCCCCcchhhhhccCCCCccceEE
Q 001316 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE------GKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1102)
Q Consensus 320 L~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~------~k~~hvPYRdSkLTrLLqdsLgGnskt~~I 392 (1102)
|+||||||||| +.+|+.|.|+|||.+|||||+|||+||+||++ ++..+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 56899999999999999999999999999986 234599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHccccc-------CCCHHHHH
Q 001316 393 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILV-------GVSHEELM 465 (1102)
Q Consensus 393 ~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~~-------~~~~~e~~ 465 (1102)
|+|||++.||+|||+|||||+|||+|+|+|++|+..+.+ +|++|+.||.+||..|.....+... .....++.
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e 401 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIE 401 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHH
Confidence 999999999999999999999999999999999977655 8999999999999988765433221 13456778
Q ss_pred HHHHHHHHHHH
Q 001316 466 TLRQKLEEGQV 476 (1102)
Q Consensus 466 ~l~~~l~~~~~ 476 (1102)
+++++|++.+.
T Consensus 402 ~~~~~L~E~Ek 412 (1221)
T KOG0245|consen 402 ELRERLQETEK 412 (1221)
T ss_pred HHHHHHHHHHH
Confidence 88888876443
No 3
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9.4e-83 Score=775.55 Aligned_cols=355 Identities=37% Similarity=0.631 Sum_probs=316.1
Q ss_pred CCCCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 92 LDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 92 ~~~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
.+.+....++|+|+|||||+++.| .+..+++..+++.+.+. .+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 90 ~~en~~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLd 163 (1320)
T PLN03188 90 APENGVSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLA 163 (1320)
T ss_pred cccccCCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 334445577999999999999886 35566666667766654 367999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCC----------CCCCchhhHHHHHHHHhhcC------CCceeEEEeehhhhhcceee
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGDQ----------NSPGIIPLAIKDVFSIIQDT------PGREFLLRVSYLEIYNEVIN 235 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~----------~~~GIipr~~~~LF~~i~~~------~~~~~~v~vS~lEIYnE~i~ 235 (1102)
|||+||||||||||||||||+|+. .++|||||++++||..|... ....|.|+|||+|||||+||
T Consensus 164 GyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~ 243 (1320)
T PLN03188 164 GFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQIT 243 (1320)
T ss_pred CCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcce
Confidence 999999999999999999999964 46899999999999998642 34579999999999999999
Q ss_pred ecCCCCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCC--CCC
Q 001316 236 DLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEY 312 (1102)
Q Consensus 236 DLL~~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~--~~~ 312 (1102)
|||+|....|.|++++ .|+||.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|.|++.... +..
T Consensus 244 DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ 323 (1320)
T PLN03188 244 DLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGL 323 (1320)
T ss_pred eccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCC
Confidence 9999998899999998 5889999999999999999999999999999999999999999999999999875432 223
Q ss_pred CcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhc----CCCCCccCCCCcchhhhhccCCCCc
Q 001316 313 DGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE----GKASHVPYRDSKLTRLLQSSLSGHG 387 (1102)
Q Consensus 313 ~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~----~k~~hvPYRdSkLTrLLqdsLgGns 387 (1102)
..+..|+|+||||||||| .++++.|.+++|+++||+||++||+||.+|++ ++..||||||||||+||||+|||||
T Consensus 324 ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNS 403 (1320)
T PLN03188 324 SSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNA 403 (1320)
T ss_pred cceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCc
Confidence 456789999999999999 45889999999999999999999999999985 4557999999999999999999999
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001316 388 HVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRG 454 (1102)
Q Consensus 388 kt~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~ 454 (1102)
+|+|||||||+..+++||++||+||+|||+|+|.|.+|..... .+..|++.|..|++||..++.+
T Consensus 404 KTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~--~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 404 KLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD--DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999986543 3556778888888888888764
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-88 Score=792.47 Aligned_cols=355 Identities=43% Similarity=0.627 Sum_probs=319.3
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEe-cC----CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVR-NE----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~-~~----~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l 170 (1102)
...+|+|+||+||++..+...+....+..+.. .+.. +. ..+.+.|+||+||+++++|++||+.++.|+|++||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35689999999999997765554433333322 2221 11 22456799999999999999999999999999999
Q ss_pred cCCceeEEeeccCCCCCccccCCC-CCCCCchhhHHHHHHHHhhcCCC-ceeEEEeehhhhhcceeeecCCCCC-CcceE
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMHGD-QNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG-QNLRV 247 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~G~-~~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~i 247 (1102)
+||||||||||||||||||||.|. +...|||||++.+||.+|....+ ..|.|+|||+|||||.|+|||+|.. +.|.|
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 999999999999999999999999 66789999999999999987754 4799999999999999999999987 68999
Q ss_pred EeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecC-CCCCCcEEEEEEEEeec
Q 001316 248 REDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDH-GDEYDGVIFSQLNLIDL 325 (1102)
Q Consensus 248 re~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~-~~~~~~~~~skL~lVDL 325 (1102)
++++ .|+||+||+++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++... ..+......|+|+||||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDL 242 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeec
Confidence 9999 799999999999999999999999999999999999999999999999999999432 33445677899999999
Q ss_pred CCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHH
Q 001316 326 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1102)
Q Consensus 326 AGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~E 404 (1102)
||||| .+++++|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999 67999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHc
Q 001316 405 THNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKR 453 (1102)
Q Consensus 405 TlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~ 453 (1102)
|++|||||+|||.|+|+|.+|+..+ ++.+..|+.+|..|+.+|.....
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999655 46899999999999999998654
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.7e-86 Score=799.04 Aligned_cols=355 Identities=50% Similarity=0.795 Sum_probs=331.4
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCC-------CcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNP-------ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
...|.|+|||||+++++...++...|...++..++..... ...|.||+||+++++|++||+..++|+|++||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4589999999999999877788888887766554433322 278999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCCCcceEEeCC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1102)
|||+||||||||||||||||+|...+|||||+++.+||+.|....++.|.|+|||+|||||.|+|||+|.+..|.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred C-CcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC
Q 001316 252 Q-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 252 ~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1102)
. |++|.||+++.|.|.++++.+|..|+.+|+++.|++|..|||||+||+|.|.+...... . ..++|+|||||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--S-RVSKLNLIDLAGSER 241 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--c-hhheehhhhhhhhhh
Confidence 5 99999999999999999999999999999999999999999999999999999876544 2 678999999999999
Q ss_pred -cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC-CCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 331 -~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~-k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
.++++.|.|++||++||+||++||+||.+|+++ ...||||||||||||||++|||||+|+|||||+|+..+++||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 579999999999999999999999999999998 456899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 001316 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGIL 456 (1102)
Q Consensus 409 LrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~~~~~ 456 (1102)
|+||+|||+|++++.+|.+.....++..++++|..|+.++..++....
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred HHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999998998889999999999999876543
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.3e-84 Score=734.14 Aligned_cols=341 Identities=43% Similarity=0.650 Sum_probs=314.9
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
.-++|+|+||+||++..|...+...+..+.+ .++++...+....|.||+||.|+++|++||+.++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 3568999999999999998887765544433 45555555556899999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcCCC-ceeEEEeehhhhhcceeeecCCCCCCcceEEeCC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1102)
||||||||||||||||.|... ..|||||++++||.+|...+. .+|.|.|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999765 569999999999999987654 5999999999999999999999999999999996
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC
Q 001316 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1102)
.++||+|+++..|.++++++.+|+.|..+|+++.|+||.+|||||+||+|+|.+....+ ..+..|+|+||||||||+
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~--~~~~~gkLyLVDLaGSEk 242 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED--KRKLSGKLYLVDLAGSEK 242 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc--hhhccccEEEEEcccccc
Confidence 67899999999999999999999999999999999999999999999999999876543 457889999999999998
Q ss_pred -cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHH
Q 001316 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1102)
Q Consensus 331 -~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTL 409 (1102)
+|+|+.|.-+.|+++||+||++||+||++|++|..+|||||||||||||||+|||||+|.+|+|++|+..+..||.+||
T Consensus 243 vsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl 322 (607)
T KOG0240|consen 243 VSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTL 322 (607)
T ss_pred cCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccch
Confidence 7899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccCHHHHHHHHHHH
Q 001316 410 KFASRAKRVEIYASRNKIIDEKSLIKKYQRE 440 (1102)
Q Consensus 410 rfA~rak~I~~~~~~n~~~~~~~~i~~~~~e 440 (1102)
+|++|||.|+|.+.+|...+.+.+.++|..+
T Consensus 323 ~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 323 RFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred hhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 9999999999999999998888888777655
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-82 Score=734.59 Aligned_cols=353 Identities=40% Similarity=0.633 Sum_probs=323.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecC---------CCCCcceeeceecCCC-------CChhHHHhhh
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE---------YNPATAYAFDRVFGPH-------ANSQEVYDVA 161 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~~~~f~FD~VF~~~-------~~q~~Vy~~~ 161 (1102)
+..+|+|+|||||++.+|+....++++.+++...+... .++.++|.||++|++. +.|+.||+.+
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 35689999999999999999998888888876544332 2456899999999876 5799999999
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc--CCCceeEEEeehhhhhcceeeecCC
Q 001316 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLD 239 (1102)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1102)
+..+|+++|+|||+||||||||||||||||+|..++||||||.+..||..|.. .+...|.|.|||+|||||++||||+
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 99999999999999999999999999999999999999999999999999975 4667999999999999999999999
Q ss_pred CCC--CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCC--CCCCc
Q 001316 240 PTG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEYDG 314 (1102)
Q Consensus 240 ~~~--~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~--~~~~~ 314 (1102)
|.+ +.|+++++. .|.||.||++..|.|++|+-.+|..|+++|+++.|+||..|||||+||.|.|.+.-.+ ....+
T Consensus 162 Pk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sg 241 (1714)
T KOG0241|consen 162 PKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSG 241 (1714)
T ss_pred CCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcch
Confidence 975 679999998 7999999999999999999999999999999999999999999999999999886433 33456
Q ss_pred EEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhc-----CCCCCccCCCCcchhhhhccCCCCcc
Q 001316 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGH 388 (1102)
Q Consensus 315 ~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~-----~k~~hvPYRdSkLTrLLqdsLgGnsk 388 (1102)
-+.|+|.||||||||| .++++.|.|++||++||+||++||.||++|++ |+.++||||||.|||||||+|||||+
T Consensus 242 eKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsr 321 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSR 321 (1714)
T ss_pred hheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCce
Confidence 6789999999999999 68999999999999999999999999999987 34569999999999999999999999
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 001316 389 VSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQL 451 (1102)
Q Consensus 389 t~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~ 451 (1102)
|+||+||||++.+|+|||+|||||.|||+|+|++.+|+..+. ..|++++.|+..|+.+|.+.
T Consensus 322 TvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 322 TVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred eEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999986554 47889999999999999874
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.1e-79 Score=698.38 Aligned_cols=318 Identities=44% Similarity=0.677 Sum_probs=286.7
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1102)
++|+|+||+||+.+.|...+...++. .+++.++... .+.+.|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS-HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeC-CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 47999999999999987655444443 3344444332 346889999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCCC--------CCCchhhHHHHHHHHhhcC-----CCceeEEEeehhhhhcceeeecCCCCCCcc
Q 001316 179 AYGVTSSGKTHTMHGDQN--------SPGIIPLAIKDVFSIIQDT-----PGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1102)
Q Consensus 179 aYGqTgSGKT~Tm~G~~~--------~~GIipr~~~~LF~~i~~~-----~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1102)
|||||||||||||+|+.. ++|||||++++||..+... .+..|.|+|||+|||||+|||||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 999999999999999763 6799999999999998643 346899999999999999999999998899
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEee
Q 001316 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1102)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1102)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+............|+|+|||
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VD 239 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVD 239 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEE
Confidence 999998 6889999999999999999999999999999999999999999999999999987655444456789999999
Q ss_pred cCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhc---CCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCC
Q 001316 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE---GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1102)
Q Consensus 325 LAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~---~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~ 400 (1102)
|||||| .++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||+|+..
T Consensus 240 LAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~ 319 (337)
T cd01373 240 LAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSK 319 (337)
T ss_pred CCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcc
Confidence 999999 45778999999999999999999999999985 34679999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001316 401 SMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 401 ~~~ETlsTLrfA~rak~I 418 (1102)
+++||++||+||.|||+|
T Consensus 320 ~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 320 CFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 999999999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3e-78 Score=690.55 Aligned_cols=318 Identities=44% Similarity=0.713 Sum_probs=291.1
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecCC-------------CCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNEY-------------NPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1102)
+|+|+|||||+++.|...+...+|.. ++..++.... ...+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 59999999999999987776665554 4444443321 135689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcceeeecCCCCCCcc
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1102)
+++++|||+||||||||||||||||+|+..++|||||++++||+.++... +..|.|+|||+|||||+|+|||++....+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67899999999999999999999988899
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC-CCCcEEEEEEEEe
Q 001316 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLI 323 (1102)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lV 323 (1102)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+...+. .......|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 999999 67899999999999999999999999999999999999999999999999999887542 1345778999999
Q ss_pred ecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCC--CCCccCCCCcchhhhhccCCCCccceEEEeeCCCCC
Q 001316 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1102)
Q Consensus 324 DLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k--~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~ 400 (1102)
||||||| .+++..|.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||||+..
T Consensus 241 DLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~ 320 (338)
T cd01370 241 DLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSS 320 (338)
T ss_pred ECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999 5578899999999999999999999999999876 379999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001316 401 SMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 401 ~~~ETlsTLrfA~rak~I 418 (1102)
+++||++||+||+|||+|
T Consensus 321 ~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 321 HYEETHNTLKYANRAKNI 338 (338)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.8e-76 Score=674.62 Aligned_cols=312 Identities=40% Similarity=0.636 Sum_probs=281.4
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecC-------------CCCCcceeeceecCCCCChhHHHhhhhHHH
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNE-------------YNPATAYAFDRVFGPHANSQEVYDVAARPV 165 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~pl 165 (1102)
++|+|+|||||+.+.|...+...+| ..++.++.... ....+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999998766554443 34555554332 123568999999999999999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC---
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--- 242 (1102)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999998754
Q ss_pred ---CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC------CC
Q 001316 243 ---QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EY 312 (1102)
Q Consensus 243 ---~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~------~~ 312 (1102)
..+.|++++ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999998 57899999999999999999999999999999999999999999999999998875432 12
Q ss_pred CcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC-----CCCCccCCCCcchhhhhccCCCC
Q 001316 313 DGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----KASHVPYRDSKLTRLLQSSLSGH 386 (1102)
Q Consensus 313 ~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~-----k~~hvPYRdSkLTrLLqdsLgGn 386 (1102)
..+..|+|+||||||||| .++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 456789999999999999 567899999999999999999999999999873 46799999999999999999999
Q ss_pred ccceEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001316 387 GHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1102)
Q Consensus 387 skt~~I~~isP~~~~~~ETlsTLrfA~rak 416 (1102)
|+|+||+||+|+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=9.3e-76 Score=674.91 Aligned_cols=326 Identities=39% Similarity=0.606 Sum_probs=298.3
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-------CCCcceeeceecCCC-------CChhHHHhhhhHHH
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-------NPATAYAFDRVFGPH-------ANSQEVYDVAARPV 165 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~FD~VF~~~-------~~q~~Vy~~~~~pl 165 (1102)
++|+|+||+||++..|...+...++..++..+.+... .....|.||+|||++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999888887777766666554332 245689999999999 99999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC--CceeEEEeehhhhhcceeeecCCCCC-
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPTG- 242 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~~- 242 (1102)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999997654 46899999999999999999999874
Q ss_pred --CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC--CCCcEEE
Q 001316 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIF 317 (1102)
Q Consensus 243 --~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~ 317 (1102)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+..... .......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 689999998 68899999999999999999999999999999999999999999999999999876543 2345678
Q ss_pred EEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC-------CCCCccCCCCcchhhhhccCCCCccc
Q 001316 318 SQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-------KASHVPYRDSKLTRLLQSSLSGHGHV 389 (1102)
Q Consensus 318 skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~-------k~~hvPYRdSkLTrLLqdsLgGnskt 389 (1102)
|+|+||||||||+ .+++..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 9999999999999 457788999999999999999999999999864 35799999999999999999999999
Q ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001316 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425 (1102)
Q Consensus 390 ~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n 425 (1102)
+||+||+|...+++||++||+||.|+++|++.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999875
No 12
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=3.5e-74 Score=653.47 Aligned_cols=317 Identities=62% Similarity=0.974 Sum_probs=293.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfa 179 (1102)
+|+|+||+||+...|.. +...+|..+++ +++..+....+.|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999999874 44556665554 67666666788999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCCCcceEEeCCC-CcEeeC
Q 001316 180 YGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GTYVEG 258 (1102)
Q Consensus 180 YGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~~-g~~v~g 258 (1102)
||||||||||||+|+..++|||||++++||..+...++..|.|+|||+|||||+|||||+|....+.+++++. |++|.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 9999999999999999999999999999999998888889999999999999999999999988999999985 899999
Q ss_pred ceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC-CCCcEEEEEEEEeecCCCCCcccccch
Q 001316 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLAGSESSKTETTG 337 (1102)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lVDLAGSEr~kt~~~g 337 (1102)
++++.|.|+++++.+|..|.++|++++|.+|.+|||||+||+|+|.+...+. .......|+|+||||||||+......|
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~~~ 239 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTGAG 239 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999877554 235677899999999999995433389
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHhhcCC-CCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001316 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1102)
Q Consensus 338 ~r~kE~~~INkSL~aLg~vI~aL~~~k-~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak 416 (1102)
.+++|+.+||+||.+|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||+|...+++||++||+||+||+
T Consensus 240 ~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~ 319 (321)
T cd01374 240 ERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAK 319 (321)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999976 6799999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 001316 417 RV 418 (1102)
Q Consensus 417 ~I 418 (1102)
+|
T Consensus 320 ~i 321 (321)
T cd01374 320 KV 321 (321)
T ss_pred cC
Confidence 86
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.4e-74 Score=655.43 Aligned_cols=319 Identities=42% Similarity=0.694 Sum_probs=291.3
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEee--CCCEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1102)
++|+|+||+||+++.|...+...++.. +...+.+... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999987776555443 3334433322 345789999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC-CcceEE
Q 001316 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~ir 248 (1102)
||+||||||||||||||||+|+.. .+|||||++++||..+...++..|.|+|||+|||||+|+|||++.. ..+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999888778999999999999999999999875 689999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC-CCCcEEEEEEEEeecC
Q 001316 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLA 326 (1102)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~lVDLA 326 (1102)
+++ .|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|++..... ....+..|+|+|||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLA 240 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECC
Confidence 998 48899999999999999999999999999999999999999999999999999876543 2345778999999999
Q ss_pred CCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHH
Q 001316 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1102)
Q Consensus 327 GSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ET 405 (1102)
|||+ .+++..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|...+++||
T Consensus 241 GsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eT 320 (333)
T cd01371 241 GSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDET 320 (333)
T ss_pred CCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 9999 567788999999999999999999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 001316 406 HNTLKFASRAKRV 418 (1102)
Q Consensus 406 lsTLrfA~rak~I 418 (1102)
++||+||+|||+|
T Consensus 321 l~TL~fa~r~r~I 333 (333)
T cd01371 321 LSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999987
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.5e-74 Score=654.37 Aligned_cols=309 Identities=38% Similarity=0.609 Sum_probs=280.9
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecC---------CCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~---------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
++|+|+|||||+.+.|...++..++..++. ++.+.. ......|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999987666555555543 443331 1125689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCCCcceEEe
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRE 249 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire 249 (1102)
++|||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|+|||+|||||.|+|||++ ...+.|++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999998665 68999999999999999999998 56799999
Q ss_pred CC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCC
Q 001316 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1102)
Q Consensus 250 ~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGS 328 (1102)
++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|..... ....|+|+|||||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~~vDLAGs 233 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----NKLLGKLSFIDLAGS 233 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----CeeEEEEEEeecCCc
Confidence 98 568999999999999999999999999999999999999999999999999998654 356799999999999
Q ss_pred CCcc--cccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHH
Q 001316 329 ESSK--TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1102)
Q Consensus 329 Er~k--t~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETl 406 (1102)
|+.. ....|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||+|+..+++||+
T Consensus 234 E~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 234 ERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred cccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 9854 34578999999999999999999999999876 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 001316 407 NTLKFASRAK 416 (1102)
Q Consensus 407 sTLrfA~rak 416 (1102)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1e-73 Score=657.34 Aligned_cols=325 Identities=39% Similarity=0.640 Sum_probs=293.0
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~ 173 (1102)
.+|+|+||+||+.+.|...+...++..++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999997766655554433 44444332 2467899999999999999999999999999999999
Q ss_pred ceeEEeeccCCCCCccccCCCCC-----------CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCC-
Q 001316 174 NGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT- 241 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~- 241 (1102)
|+||||||||||||||||+|+.. .+|||||++.+||+.+... +..|.|+|||+|||||+|||||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 99999999999999999999743 4899999999999999865 6789999999999999999999987
Q ss_pred --CCcceEEeC---CCCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC-CCcE
Q 001316 242 --GQNLRVRED---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1102)
Q Consensus 242 --~~~l~ire~---~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~-~~~~ 315 (1102)
..+++++++ ..|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+...... ....
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 578999999 3689999999999999999999999999999999999999999999999999998764422 2445
Q ss_pred EEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEe
Q 001316 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1102)
Q Consensus 316 ~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~ 394 (1102)
..|+|+||||||||+ .+.++.|.+.+|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+|
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 689999999999998 4577888999999999999999999999999865 69999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001316 395 VTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1102)
Q Consensus 395 isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~ 426 (1102)
|+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999998884
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.7e-73 Score=647.30 Aligned_cols=317 Identities=44% Similarity=0.694 Sum_probs=292.0
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1102)
++|+|+||+||+++.|...+...++. .++.++.+......+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 58999999999999987666544444 44556666665667899999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcceeeecCCCCCCcceEEeCC-CC
Q 001316 179 AYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QG 253 (1102)
Q Consensus 179 aYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~-~g 253 (1102)
|||+|||||||||+|+.. .+|||||++++||+.+.... +..|.|+|||+|||||.|+|||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999999988 89999999999999997654 45899999999999999999999998899999998 68
Q ss_pred cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC-cc
Q 001316 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SK 332 (1102)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~k 332 (1102)
++|.|++++.|.|.++++.+|..|..+|++++|.+|..|||||+||+|.|.+..... .....|+|+||||||||+ .+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l~~VDLAGsE~~~~ 239 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKLFLVDLAGSEKVSK 239 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEEEEEECCCCCcccc
Confidence 899999999999999999999999999999999999999999999999998876433 346789999999999999 56
Q ss_pred cccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHH
Q 001316 333 TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412 (1102)
Q Consensus 333 t~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA 412 (1102)
++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||
T Consensus 240 ~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a 319 (325)
T cd01369 240 TGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFG 319 (325)
T ss_pred cCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHH
Confidence 78899999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 001316 413 SRAKRV 418 (1102)
Q Consensus 413 ~rak~I 418 (1102)
+|||+|
T Consensus 320 ~r~~~i 325 (325)
T cd01369 320 ARAKTI 325 (325)
T ss_pred HHhhcC
Confidence 999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=7.8e-73 Score=641.58 Aligned_cols=309 Identities=35% Similarity=0.572 Sum_probs=279.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCC-----CEEEecCC---CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADG-----DKIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~-----~~~~~~~~---~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1102)
+|+|+|||||+.+.|.... .++...++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS-SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCC-ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999885433 23323233 23433322 245789999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCCCcceEEeCC-
Q 001316 173 VNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA- 251 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~- 251 (1102)
||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|+|||+|||||.|+|||++....+.|++++
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 99999999999999999999999999999999999999887543 6799999999999999999999988899999997
Q ss_pred CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC-
Q 001316 252 QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES- 330 (1102)
Q Consensus 252 ~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr- 330 (1102)
.|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+.... ....|+|+||||||||+
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~~VDLAGsE~~ 234 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQLEGKLNLIDLAGSEDN 234 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ceEEEEEEEEECCCCCcc
Confidence 5679999999999999999999999999999999999999999999999999887542 35789999999999998
Q ss_pred cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHH
Q 001316 331 SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1102)
Q Consensus 331 ~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLr 410 (1102)
.+++..|.+++|+..||+||++|++||.+|+.+. .|||||||+||+||+|+|||||+|+|||||+|...+++||++||+
T Consensus 235 ~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (319)
T cd01376 235 RRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN 313 (319)
T ss_pred cccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH
Confidence 4578899999999999999999999999999865 699999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 001316 411 FASRAK 416 (1102)
Q Consensus 411 fA~rak 416 (1102)
||+|||
T Consensus 314 fa~r~~ 319 (319)
T cd01376 314 FASRSK 319 (319)
T ss_pred HHHhhC
Confidence 999996
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2e-72 Score=641.78 Aligned_cols=312 Identities=41% Similarity=0.625 Sum_probs=282.3
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe-----------cCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-----------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~-----------~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
+|+|+||+||+...+. ..+.+.+++..+.. +.......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 4899999999987432 23444455444222 12234567999999999 999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCC---CCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC----
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~---- 242 (1102)
++|||+||||||||||||||||+|+. .++|||||++++||+.++..++..|.|+|||+|||||+|||||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999976 47899999999999999988888999999999999999999999874
Q ss_pred --CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEE
Q 001316 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1102)
Q Consensus 243 --~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~sk 319 (1102)
+.+.|++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+............|+
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~ 236 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSK 236 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEE
Confidence 579999997 67899999999999999999999999999999999999999999999999999886555556778899
Q ss_pred EEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCC
Q 001316 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 398 (1102)
Q Consensus 320 L~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~ 398 (1102)
|+||||||||+ .+++..|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+|||||+|+
T Consensus 237 l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~ 316 (334)
T cd01375 237 LNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVE 316 (334)
T ss_pred EEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999 46788899999999999999999999999999876899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 001316 399 SSSMEETHNTLKFASRAK 416 (1102)
Q Consensus 399 ~~~~~ETlsTLrfA~rak 416 (1102)
..+++||++||+||+|++
T Consensus 317 ~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 317 PSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.5e-72 Score=643.52 Aligned_cols=316 Identities=42% Similarity=0.667 Sum_probs=286.8
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeC--CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~--~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIf 178 (1102)
+|+|+||+||+.+.|...+....+..+ ...+... ..+.|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999999999876665555432 2344432 25789999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCC------CCCCchhhHHHHHHHHhhcCCC-ceeEEEeehhhhhcceeeecCCCC---CCcceEE
Q 001316 179 AYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPT---GQNLRVR 248 (1102)
Q Consensus 179 aYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~---~~~l~ir 248 (1102)
|||||||||||||+|+. .++|||||++++||+.++.... ..|.|.|||+|||||.|+|||++. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999974 5799999999999999987654 789999999999999999999986 5789999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC--------CCCcEEEEE
Q 001316 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--------EYDGVIFSQ 319 (1102)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~--------~~~~~~~sk 319 (1102)
+++ .|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+. .......|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 998 67899999999999999999999999999999999999999999999999999887641 224567899
Q ss_pred EEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCC--CCccCCCCcchhhhhccCCCCccceEEEeeC
Q 001316 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSLICTVT 396 (1102)
Q Consensus 320 L~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~--~hvPYRdSkLTrLLqdsLgGnskt~~I~~is 396 (1102)
|+||||||||+ .+++..|.+++|+..||+||++|++||.+|+.+.. .||||||||||+||+|+||||++|+||+||+
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999999 56788999999999999999999999999998763 7999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccc
Q 001316 397 PASSSMEETHNTLKFASRAKRVE 419 (1102)
Q Consensus 397 P~~~~~~ETlsTLrfA~rak~I~ 419 (1102)
|...+++||++||+||+|||+|+
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.4e-70 Score=626.05 Aligned_cols=318 Identities=40% Similarity=0.623 Sum_probs=289.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC-CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 99 GDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY-NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~-~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
+|+|+|+||+||+.+.|......++...++ .++..... ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999999876433344444444 55555443 567889999999999999999997 58999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC--CceeEEEeehhhhhcceeeecCCCC---CCcceEEeC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT---GQNLRVRED 250 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~---~~~l~ire~ 250 (1102)
||||||+|||||||||+|+..++|||||++++||+.++... +..|.|.|||+|||||+|+|||++. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 99999999999999999999999999999999999998664 4789999999999999999999986 678999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCC
Q 001316 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1102)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1102)
+ .|++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|.|.+.... ......|+|+||||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--CCcEEEEEEEEEECCCCc
Confidence 9 6789999999999999999999999999999999999999999999999999987654 345678999999999999
Q ss_pred C-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 330 r-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
+ .+.+..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+||||++|+|||||+|...+++||++|
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 9 457888999999999999999999999999987 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 001316 409 LKFASRAKRVEI 420 (1102)
Q Consensus 409 LrfA~rak~I~~ 420 (1102)
|+||+|+++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999986
No 21
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.4e-70 Score=663.51 Aligned_cols=326 Identities=39% Similarity=0.549 Sum_probs=289.7
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCCCCCc----ceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPAT----AYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~~~~~----~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
.+-+|||+|+|||||+.+.+.......+...++ ..++........ .|.||+||+|.++|++||. -+.|+|.++
T Consensus 310 ~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~ 388 (670)
T KOG0239|consen 310 LELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFE-EVSPLVQSA 388 (670)
T ss_pred HHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHH-HHHHHHHHH
Confidence 356899999999999999987653333333332 233333222222 4999999999999999998 678999999
Q ss_pred hcCCceeEEeeccCCCCCccccCC-CCCCCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcceeeecCCCC--CCcc
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHG-DQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPT--GQNL 245 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G-~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~--~~~l 245 (1102)
|+|||+||||||||||||||||.| +++++|||||++.+||..+.... ++.|.+.+||+|||||.|+|||++. ...+
T Consensus 389 lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~ 468 (670)
T KOG0239|consen 389 LDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKL 468 (670)
T ss_pred hcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccce
Confidence 999999999999999999999999 79999999999999999997543 6899999999999999999999987 4789
Q ss_pred eEEeCCC-CcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEee
Q 001316 246 RVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1102)
Q Consensus 246 ~ire~~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1102)
.|++++. +.+|.+++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+. ..+....+.|+|||
T Consensus 469 ~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~--~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 469 EIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE--LTGIRVTGVLNLVD 546 (670)
T ss_pred eEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc--CcccccccceeEee
Confidence 9999984 57899999999999999999999999999999999999999999999999987633 33456789999999
Q ss_pred cCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHH
Q 001316 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1102)
Q Consensus 325 LAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ 403 (1102)
|||||| .+++.+|.|++|+.+||+||++||.||.||+. +..||||||||||+||||+|||++||+|+++|||...++.
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~ 625 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALF 625 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHh
Confidence 999999 67999999999999999999999999999998 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccc
Q 001316 404 ETHNTLKFASRAKRVEIYASRN 425 (1102)
Q Consensus 404 ETlsTLrfA~rak~I~~~~~~n 425 (1102)
||+++|+||.|++.+...+.+.
T Consensus 626 Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 626 ETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred hhhhccchHHHhhceecccccc
Confidence 9999999999999998776553
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=4e-69 Score=615.73 Aligned_cols=325 Identities=46% Similarity=0.701 Sum_probs=296.9
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC---EEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADGD---KIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~---~~~~~~---~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N 174 (1102)
+|+|+||+||+...|...+....|..++. .+.... ......|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 59999999999999877666555554333 454432 234578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcceeeecCCCCCCcceEEeCCC-
Q 001316 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ- 252 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~~- 252 (1102)
+|||+||+|||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||.|+|||++....+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 999999999999999999999999999999999999997654 568999999999999999999999999999999985
Q ss_pred CcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCCc-
Q 001316 253 GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSESS- 331 (1102)
Q Consensus 253 g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~- 331 (1102)
|+++.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+............|+|+||||||+|+.
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~ 240 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERAS 240 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccc
Confidence 7899999999999999999999999999999999999999999999999999875555556678999999999999994
Q ss_pred ccccchhhhhhhHHHhhhHHHHHHHHHHhhcC-CCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHH
Q 001316 332 KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1102)
Q Consensus 332 kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~-k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLr 410 (1102)
+.+..|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++||+
T Consensus 241 ~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~ 320 (335)
T smart00129 241 KTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLR 320 (335)
T ss_pred cccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHH
Confidence 56788999999999999999999999999985 56799999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccc
Q 001316 411 FASRAKRVEIYASRN 425 (1102)
Q Consensus 411 fA~rak~I~~~~~~n 425 (1102)
||.++++|++.|++|
T Consensus 321 ~a~~~~~i~~~p~~~ 335 (335)
T smart00129 321 FASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHhhcccCCCcC
Confidence 999999999999764
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.2e-68 Score=602.74 Aligned_cols=316 Identities=45% Similarity=0.723 Sum_probs=287.1
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
+|+|+||+||+...|...+..++...+++.+..... .....|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 599999999999877333333333333366655442 246789999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC--CceeEEEeehhhhhcceeeecCCCC--CCcceEEeCC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT--GQNLRVREDA 251 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~--~~~l~ire~~ 251 (1102)
||||||+|||||||||+|+..++|||||++++||..+.... +..|.|.|||+|||+|+|+|||++. ...+.|++++
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~ 160 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP 160 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence 99999999999999999999999999999999999998765 5789999999999999999999997 8899999999
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC
Q 001316 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1102)
.|+++.|++++.|.|++|++.+|..|..+|.++.|.+|..|||||+||+|.|..............|+|+||||||+|+
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~ 240 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSER 240 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCc
Confidence 6889999999999999999999999999999999999999999999999999998765544347889999999999998
Q ss_pred -cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCC-CCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 331 -~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k-~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
.+.+..|.+.+|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+||+||+|...+++||++|
T Consensus 241 ~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~t 320 (328)
T cd00106 241 AKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLST 320 (328)
T ss_pred ccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHH
Confidence 4567889999999999999999999999999876 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 001316 409 LKFASRAK 416 (1102)
Q Consensus 409 LrfA~rak 416 (1102)
|+||+|||
T Consensus 321 L~~a~r~~ 328 (328)
T cd00106 321 LRFASRAK 328 (328)
T ss_pred HHHHHhcC
Confidence 99999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.2e-69 Score=612.65 Aligned_cols=312 Identities=46% Similarity=0.724 Sum_probs=278.5
Q ss_pred EeCCCChhhhhcCCeEEEeeCCC----EEE---ecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001316 107 RFRPLSEREFQRGDEIAWYADGD----KIV---RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1102)
Q Consensus 107 RvRP~~~~E~~~~~~~~~~~~~~----~~~---~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfa 179 (1102)
||||+++.|...+....+..... ... .........|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999998888766654321 111 11233456899999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCC--CCCCCchhhHHHHHHHHhhcCCC---ceeEEEeehhhhhcceeeecCCCC----CCcceEEeC
Q 001316 180 YGVTSSGKTHTMHGD--QNSPGIIPLAIKDVFSIIQDTPG---REFLLRVSYLEIYNEVINDLLDPT----GQNLRVRED 250 (1102)
Q Consensus 180 YGqTgSGKT~Tm~G~--~~~~GIipr~~~~LF~~i~~~~~---~~~~v~vS~lEIYnE~i~DLL~~~----~~~l~ire~ 250 (1102)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||.|+|||++. ...+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 89999999999999999987554 489999999999999999999987 357999999
Q ss_pred CC-C-cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCC--cEEEEEEEEeecC
Q 001316 251 AQ-G-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD--GVIFSQLNLIDLA 326 (1102)
Q Consensus 251 ~~-g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~--~~~~skL~lVDLA 326 (1102)
+. | ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|.|.+........ ....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 95 6 899999999999999999999999999999999999999999999999999987665443 2678999999999
Q ss_pred CCCCcc-ccc-chhhhhhhHHHhhhHHHHHHHHHHhhcC-CCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHH
Q 001316 327 GSESSK-TET-TGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1102)
Q Consensus 327 GSEr~k-t~~-~g~r~kE~~~INkSL~aLg~vI~aL~~~-k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ 403 (1102)
|+|+.+ .+. .+.+.+|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 999844 443 4888999999999999999999999997 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 001316 404 ETHNTLKFASRAKRV 418 (1102)
Q Consensus 404 ETlsTLrfA~rak~I 418 (1102)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 25
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-67 Score=630.55 Aligned_cols=338 Identities=38% Similarity=0.567 Sum_probs=299.8
Q ss_pred eCCCChhhhhcCCeEEEe--eCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCC
Q 001316 108 FRPLSEREFQRGDEIAWY--ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSS 185 (1102)
Q Consensus 108 vRP~~~~E~~~~~~~~~~--~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgS 185 (1102)
|||+...|...|...++. +....+.++ ....|+||+||.....|.++|+.++.|+++.+|+|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999998888765443 333444433 346799999999999999999999999999999999999999999999
Q ss_pred CCccccCCC----CCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC--CcceEEeCCC-CcEeeC
Q 001316 186 GKTHTMHGD----QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQ-GTYVEG 258 (1102)
Q Consensus 186 GKT~Tm~G~----~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--~~l~ire~~~-g~~v~g 258 (1102)
||||||.+. ....|||||++.++|..|.......|.|.|||+|||++.|+|||.|.. .++.+++ +. ++.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999886 344699999999999999988888899999999999999999999653 4577888 54 488999
Q ss_pred ceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC-cccccch
Q 001316 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG 337 (1102)
Q Consensus 259 l~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~kt~~~g 337 (1102)
++++.|.+..+++..|..|...|++++|+||..|||||+||+|.+++...... .....+||+||||||||| .+++++|
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-~s~~~sKlhlVDLAGSER~kkT~a~g 235 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-RSSFCSKLHLVDLAGSERVKKTKAEG 235 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-cchhhhhhheeeccccccccccccch
Confidence 99999999999999999999999999999999999999999999987654332 235679999999999999 5699999
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHhhcCC-CCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001316 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1102)
Q Consensus 338 ~r~kE~~~INkSL~aLg~vI~aL~~~k-~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak 416 (1102)
.|++||++||.+|++||+||++|.+.+ ..|||||||||||||||+||||+.|+||+||||+..+++||++||+||.||+
T Consensus 236 drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak 315 (913)
T KOG0244|consen 236 DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAK 315 (913)
T ss_pred hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHH
Confidence 999999999999999999999998753 4799999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHH
Q 001316 417 RVEIYASRNKIIDE-KSLIKKYQREISSLKEELDQLK 452 (1102)
Q Consensus 417 ~I~~~~~~n~~~~~-~~~i~~~~~ei~~Lk~el~~~~ 452 (1102)
+|+|+|++|. |+ ...+..++.+|..|+.+|-..+
T Consensus 316 ~iknk~vvN~--d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 316 QIKNKPVVNQ--DPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred Hhcccccccc--cHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998 43 3456678888888888877654
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-68 Score=599.52 Aligned_cols=319 Identities=37% Similarity=0.566 Sum_probs=280.9
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecC---------CCCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~---------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1102)
...+.|.|+||-||++..|....+..++.. ..+.+++.+ |-....|.||++|++.++++.||..+++|||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 345789999999999999987766544443 444433322 3345689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCC------CCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecC
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQN------SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~------~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL 238 (1102)
..+|+|.-+|+||||||||||||||.|+-. ..||..++.+|+|..+... ....+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 999999999999999999999999988742 4599999999999998742 24578999999999999999999
Q ss_pred CCCCCcceEEeCCC-CcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEE
Q 001316 239 DPTGQNLRVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIF 317 (1102)
Q Consensus 239 ~~~~~~l~ire~~~-g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~ 317 (1102)
++ +..|.+.||.+ .+.|.||++..|.+.++++.+|..|+..|+++.|..|..|||||+||+|.+.... .....
T Consensus 365 ~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-----~~k~h 438 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-----EFKLH 438 (676)
T ss_pred cc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-----cceeE
Confidence 97 56799999985 5789999999999999999999999999999999999999999999999997532 24578
Q ss_pred EEEEEeecCCCCCc--ccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCC-CccceEEEe
Q 001316 318 SQLNLIDLAGSESS--KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG-HGHVSLICT 394 (1102)
Q Consensus 318 skL~lVDLAGSEr~--kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgG-nskt~~I~~ 394 (1102)
|+++||||||+||. .+.+..+++.||+.|||||++|..||.+|...+ .|+|||.||||.+|+|||-| ||+|+||+|
T Consensus 439 GKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ 517 (676)
T KOG0246|consen 439 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIAT 517 (676)
T ss_pred eEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEE
Confidence 99999999999994 356777788999999999999999999999866 49999999999999999998 999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccc
Q 001316 395 VTPASSSMEETHNTLKFASRAKRVEIYA 422 (1102)
Q Consensus 395 isP~~~~~~ETlsTLrfA~rak~I~~~~ 422 (1102)
|||.....+.||||||||+|+|......
T Consensus 518 ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 518 ISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred eCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999886544
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-66 Score=597.80 Aligned_cols=330 Identities=38% Similarity=0.610 Sum_probs=286.1
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe------------cCCCCCcceeeceecCCCCChhHHHhhh
Q 001316 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVA 161 (1102)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~------------~~~~~~~~f~FD~VF~~~~~q~~Vy~~~ 161 (1102)
++....+.|.|+||+||+.+.-...| ++...+..+++. +.....+.|.|-+||+|+++|.+||+.+
T Consensus 25 ~S~~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~ 102 (809)
T KOG0247|consen 25 ASCESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTT 102 (809)
T ss_pred cchhhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHH
Confidence 33456788999999999986222222 222223333321 2223346799999999999999999999
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc---------------------------
Q 001316 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--------------------------- 214 (1102)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--------------------------- 214 (1102)
+.|+|.+++.|.|..+|.||.|||||||||+|++..+||+||+++-||..|++
T Consensus 103 ~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 103 VAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred hHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988864
Q ss_pred -------------C-------------------------CCceeEEEeehhhhhcceeeecCCCCC-----Cc-ceEEeC
Q 001316 215 -------------T-------------------------PGREFLLRVSYLEIYNEVINDLLDPTG-----QN-LRVRED 250 (1102)
Q Consensus 215 -------------~-------------------------~~~~~~v~vS~lEIYnE~i~DLL~~~~-----~~-l~ire~ 250 (1102)
. .+..|.|+|||+|||||-|||||.+.+ +. ..+++|
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d 262 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRED 262 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 0 123589999999999999999998653 22 567788
Q ss_pred CCC-cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCC
Q 001316 251 AQG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1102)
Q Consensus 251 ~~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1102)
.+| .||.|+++|.|.|.+|++.+|..|.++|++++|..|..|||||+||+|.|-+.........++.|.|.||||||||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 765 7999999999999999999999999999999999999999999999999998776655567889999999999999
Q ss_pred C-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC----CCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHH
Q 001316 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG----KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1102)
Q Consensus 330 r-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~----k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~E 404 (1102)
| .+++++|.|++|+++||.||++||+||.+|... ...+|||||||||++++.+|.|..+++||.||+|...+|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 9 679999999999999999999999999999763 23699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccc
Q 001316 405 THNTLKFASRAKRVEIYASRN 425 (1102)
Q Consensus 405 TlsTLrfA~rak~I~~~~~~n 425 (1102)
+++.|+||.-|..|.+...++
T Consensus 423 nl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHhcccccccCccc
Confidence 999999999999998666553
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-61 Score=578.28 Aligned_cols=344 Identities=44% Similarity=0.664 Sum_probs=293.4
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
...-.+++++++..|-...+ ..+.......+.........|.||+||++.++|++||+..+.|+++.++.|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 18 EKSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred eeeecCceEEEeecCCCcch------heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 34456789999999954432 223332222221112125679999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcceeeecCCCCCCcceEEeCC-CC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QG 253 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~-~g 253 (1102)
||||||||||||||||.|....+||||+++.+||+.+.... +..|.|.|||+|||||+++|||.|....+.++++. .|
T Consensus 92 TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~ 171 (568)
T COG5059 92 TVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLG 171 (568)
T ss_pred eEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCc
Confidence 99999999999999999999999999999999999997644 46799999999999999999999988778899987 68
Q ss_pred cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC-cc
Q 001316 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SK 332 (1102)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~k 332 (1102)
++|.|++++.|.+.++++.+|..|..+|+++.|.+|..|||||+||+|.+.+...... ....++|+||||||||+ ..
T Consensus 172 v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~--~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 172 VKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG--TSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred eEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc--ceecceEEEEeeccccccch
Confidence 9999999999999999999999999999999999999999999999999998865443 22337999999999999 45
Q ss_pred cccchhhhhhhHHHhhhHHHHHHHHHHhhc-CCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHH
Q 001316 333 TETTGLRRKEGSYINKSLLTLGTVIGKLSE-GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKF 411 (1102)
Q Consensus 333 t~~~g~r~kE~~~INkSL~aLg~vI~aL~~-~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrf 411 (1102)
++..+.|++||..||+||++||+||.+|.+ .+..|||||+|||||+||++|||+++|+|||||+|...++++|++||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 688999999999999999999999999987 4457999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccccCHHHHHHHHHHHHHHHHHH
Q 001316 412 ASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEE 447 (1102)
Q Consensus 412 A~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~e 447 (1102)
|.||+.|++.+..|...+....+..+...+...+..
T Consensus 330 a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 365 (568)
T COG5059 330 ASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSE 365 (568)
T ss_pred HHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhh
Confidence 999999999999985323222344444444444433
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=3.4e-48 Score=407.74 Aligned_cols=177 Identities=41% Similarity=0.661 Sum_probs=165.4
Q ss_pred HHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeee
Q 001316 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVIND 236 (1102)
Q Consensus 157 Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~D 236 (1102)
||+.++ |+|+.+++|||+||||||||||||||||+|+..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred cCCCCCCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC-CCcE
Q 001316 237 LLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1102)
Q Consensus 237 LL~~~~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~-~~~~ 315 (1102)
++.+|..|..+|.++.|.+|..|||||+||+|+|.+...... ....
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~ 104 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQP 104 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccce
Confidence 788999999999999999999999999999999998765432 2456
Q ss_pred EEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEe
Q 001316 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1102)
Q Consensus 316 ~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~ 394 (1102)
..++|+||||||||+ .+++..+.+++|+.+||+||.+|++||.+|+++. .||||||||||+||||+|||||+|+||+|
T Consensus 105 ~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 105 KVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 789999999999998 5677889999999999999999999999999854 69999999999999999999999999999
Q ss_pred eCC
Q 001316 395 VTP 397 (1102)
Q Consensus 395 isP 397 (1102)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-12 Score=157.20 Aligned_cols=60 Identities=25% Similarity=0.530 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCccccccccccccccceEEeCCCCcccchhhh-----hcCCCCCCCcccccc--eeecc
Q 001316 1029 ARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCS-----LACSECPICRTKISD--RLFAF 1101 (1102)
Q Consensus 1029 ~~l~~~l~e~k~~~~~~~~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~-----~~~~~CPiCR~~i~~--~i~if 1101 (1102)
+.|.++++.++... .|++|.++++++|+..|||+ ||..|. .+.++||.|..+|+. +.+||
T Consensus 631 ~~L~EElk~yK~~L------------kCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 631 EVLAEELKEYKELL------------KCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHHHHHHHHHHhce------------eCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 45667778888777 89999999999999999999 999994 456899999999976 45555
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.47 E-value=1.6e-12 Score=160.40 Aligned_cols=274 Identities=17% Similarity=0.165 Sum_probs=180.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
.+.++++|+++++++++++..++++..++. .....+..+..+|++...++..+.++...|..-..+...+
T Consensus 506 ~~~~~~~l~~~~~~~~eele~~q~~~~~~~----------~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~ 575 (1317)
T KOG0612|consen 506 EEAKKRKLEALVRQLEEELEDAQKKNDNAA----------DSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQ 575 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHH
Confidence 456788999999999999999976654432 2234466778888888888888877777777666666666
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHH--HHhhhhhH-HHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL--RKKVQSQE-TENEKLKLEHVQLSEENSGLHVQNQKLAEE 800 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el--~~~~~~q~-~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e 800 (1102)
+..+.++...+.+.+..+.+.+..+... ......++ ..+...++ .++.+++.+...|.+....+..++.++.+.
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~---~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el 652 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKE---NKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEEL 652 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHH
Confidence 6655554444444442111111100000 00000000 00111111 234566777888888888888777777762
Q ss_pred HHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhcc--cccccchhhh
Q 001316 801 ASYAKELASAA---------AVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNG--VNRKYSDGMK 865 (1102)
Q Consensus 801 ~~~ak~lAsaa---------~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi----qwv~d--~~r~~~q~l~ 865 (1102)
-.-..+.++.. .-+++.+..++.++.+++.++ +|.++ ++++ +||++ ++|+|++++.
T Consensus 653 ~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~-------e~~~~e~~~~lseek~ar~k~e~~~ 723 (1317)
T KOG0612|consen 653 KRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDK-------EAQMKEIESKLSEEKSAREKAENLL 723 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH-------HHHHHHHHHHhcccccHHHHHHHHH
Confidence 22222333222 234556666666666666666 44433 4444 99999 8999999999
Q ss_pred hhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 001316 866 AGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKV-----EESKRREEALE 940 (1102)
Q Consensus 866 ~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~l-----ee~k~~~~~Le 940 (1102)
.++++++++|+++. .. ...+.|+.++..+.+..+.+.+|.+|++++.++...+.||..+- +.++++...+.
T Consensus 724 ~~i~~e~e~L~~d~--~~--~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~ 799 (1317)
T KOG0612|consen 724 LEIEAELEYLSNDY--KQ--SQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLL 799 (1317)
T ss_pred HHHHHHHHHHhhhh--hh--hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHH
Confidence 99999999999852 22 22778999999999999999999999999999999999997333 33577888888
Q ss_pred HHH
Q 001316 941 NDL 943 (1102)
Q Consensus 941 ~eL 943 (1102)
++|
T Consensus 800 ~~l 802 (1317)
T KOG0612|consen 800 DEL 802 (1317)
T ss_pred HHH
Confidence 877
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.9e-13 Score=148.64 Aligned_cols=82 Identities=29% Similarity=0.661 Sum_probs=68.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhcCCCC----ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCc
Q 001316 1020 ETPKEEPLVARLKARMQEMKEKEQKYQGNGD----PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICR 1091 (1102)
Q Consensus 1020 ~~~~~~~~~~~l~~~l~e~k~~~~~~~~~~~----~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR 1091 (1102)
...++..+++...+.++|+....+.....+. +++.+|+||++..++++++||||+|+|..|+... .+|||||
T Consensus 253 ~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICR 332 (349)
T KOG4265|consen 253 KVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICR 332 (349)
T ss_pred eeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccc
Confidence 3445566888889999999987755544444 6788999999999999999999999999998665 5699999
Q ss_pred ccccceeecc
Q 001316 1092 TKISDRLFAF 1101 (1102)
Q Consensus 1092 ~~i~~~i~if 1101 (1102)
++|...+.|+
T Consensus 333 qpi~~ll~i~ 342 (349)
T KOG4265|consen 333 QPIEELLEIY 342 (349)
T ss_pred cchHhhheec
Confidence 9999988876
No 33
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8e-12 Score=101.90 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeeccC
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFAFT 1102 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~i~if~ 1102 (1102)
.+|.||++++.+.|+..|||+|+|..|+.+. ..||+||.+|...|+.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 4899999999999999999999999997665 459999999999999874
No 34
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.1e-10 Score=122.04 Aligned_cols=50 Identities=32% Similarity=0.895 Sum_probs=48.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1102 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1102 (1102)
...|.|||+.+++++|++|||++.|..|+.+|..|||||+.|...++||.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999999999999999984
No 35
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.2e-09 Score=121.91 Aligned_cols=55 Identities=33% Similarity=0.896 Sum_probs=50.3
Q ss_pred CCCccccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001316 1048 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1102 (1102)
Q Consensus 1048 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1102 (1102)
+..+.+..|+||.+++.+++|+||||+|+|..|+...++||+||+.|...+++|.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 4455677899999999999999999999999999999999999999999998873
No 36
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.78 E-value=1.7e-09 Score=89.74 Aligned_cols=43 Identities=44% Similarity=1.228 Sum_probs=37.8
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
..|.||+++..+++++||||.+||..|+..+ ..||+||++|.+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4799999999999999999999999998766 789999999976
No 37
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-07 Score=101.13 Aligned_cols=47 Identities=38% Similarity=0.914 Sum_probs=44.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1101 (1102)
.|..|..+...++++||+|+|+|..|...+..||+|+.++...+.||
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999888889999999999999987
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.28 E-value=0.0018 Score=77.94 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.+.++++|.+++...++++..|.++.
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666654
No 39
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.3e-07 Score=96.51 Aligned_cols=51 Identities=24% Similarity=0.746 Sum_probs=42.0
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCCccccc--ceeecc
Q 001316 1050 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPICRTKIS--DRLFAF 1101 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiCR~~i~--~~i~if 1101 (1102)
+.....|.||++..++.||.+|||+ ||..|... ...||+|+..|. ..|+||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3455689999999999999999999 99999543 356999999765 477777
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.15 E-value=0.0023 Score=85.37 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.9
Q ss_pred EeeccCCCCCcccc
Q 001316 178 FAYGVTSSGKTHTM 191 (1102)
Q Consensus 178 faYGqTgSGKT~Tm 191 (1102)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 45899999999876
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.00 E-value=0.0036 Score=83.60 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 001316 927 KKVEESKRREEALENDLANMWVLVAKLKKEV 957 (1102)
Q Consensus 927 ~~lee~k~~~~~Le~eL~~m~vlv~kL~ke~ 957 (1102)
.++.++..+...+..++.++...+..+..+.
T Consensus 462 ~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555554444
No 42
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.96 E-value=2.3e-06 Score=89.59 Aligned_cols=49 Identities=20% Similarity=0.750 Sum_probs=40.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc--------------------CCCCCCCcccccc--eeecc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA--------------------CSECPICRTKISD--RLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~--------------------~~~CPiCR~~i~~--~i~if 1101 (1102)
....|.||++...+.++.+|||. ||..|... ...||+||..|.. .+++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45689999999999999999998 99999532 1469999999865 55555
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.88 E-value=0.027 Score=75.18 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=10.3
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.+.-+|++|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 3345677777777665
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.87 E-value=0.027 Score=75.29 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001316 929 VEESKRREEALENDL 943 (1102)
Q Consensus 929 lee~k~~~~~Le~eL 943 (1102)
+.+++.++..|...+
T Consensus 967 ~~~l~~~i~~lg~ai 981 (1179)
T TIGR02168 967 EEEARRRLKRLENKI 981 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554444
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.23 Score=63.87 Aligned_cols=232 Identities=20% Similarity=0.245 Sum_probs=117.7
Q ss_pred hhhHHHHHHHHHHHHHhhchHHHHHHHhh---hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----
Q 001316 608 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQ---SVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANA---- 680 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~---a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~---- 680 (1102)
..+.|..++.......-.+...+-.+-|+ ....-...+.+++++..++++.-++++.|+++|.+.+.......
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 34556666555555554444443211111 11112334567888999999999999999999977766522221
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHH--------HHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCC
Q 001316 681 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQE--------QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ 752 (1102)
Q Consensus 681 ~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqe--------qL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~ 752 (1102)
...+.+..|++++.++++.. +-..|.+....||. .++...+.+..+.+.++.|...++++.-..+
T Consensus 859 ~l~~~~~~ie~l~kE~e~~q-e~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~------ 931 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQ-EKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK------ 931 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh------
Confidence 22355666777777777653 22222334444444 3355556666666666666655532221111
Q ss_pred CCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001316 753 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL-------AEEASYAKELASAAAVELKNLAGEVTKL 825 (1102)
Q Consensus 753 ~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl-------~~e~~~ak~lAsaa~~elk~l~eev~kL 825 (1102)
-++-.+.-+...++.=..++++++.+...|.++...+......+ ......++.-.....-++.+..+.+..|
T Consensus 932 -~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 932 -TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred -cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222222223344555555555555554444444443 3333444444445556666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 001316 826 SLQNAKLEKELLAARESMHSRG 847 (1102)
Q Consensus 826 ~~e~~~l~~el~a~k~~~~~we 847 (1102)
+.+.--++.++.+.+..+..-+
T Consensus 1011 k~~rId~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 1011 KAERIDIENKLEAINGELNEIE 1032 (1293)
T ss_pred HHhhccHHHHHHHHHHHHHHHH
Confidence 6633335555554444443333
No 46
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.85 E-value=0.029 Score=67.73 Aligned_cols=53 Identities=15% Similarity=0.037 Sum_probs=37.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhcccccccch
Q 001316 810 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM---QTVNGVNRKYSD 862 (1102)
Q Consensus 810 aa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi---qwv~d~~r~~~q 862 (1102)
.+..-=|-+.|-|.|+.++..+.++.|...+..+...+++. |-.+|.+|+-+|
T Consensus 513 ~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq 568 (961)
T KOG4673|consen 513 DKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ 568 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33333456778899999999999988877666666666655 777777777554
No 47
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.7e-06 Score=85.14 Aligned_cols=47 Identities=28% Similarity=0.789 Sum_probs=37.0
Q ss_pred cccccccccccceE-E-eCCCCcccchhhhhcC----CCCCCCcccccc--eeecc
Q 001316 1054 HMCKVCFESPTAAI-L-LPCRHFCLCKSCSLAC----SECPICRTKISD--RLFAF 1101 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~v-l-~pCgH~~~C~~C~~~~----~~CPiCR~~i~~--~i~if 1101 (1102)
..|+|||+....-+ + .-|||+ ||..|.... .+||+|++.|+. +++||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 48999999776555 3 799999 999996543 679999988775 55665
No 48
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.9e-06 Score=90.98 Aligned_cols=45 Identities=36% Similarity=0.907 Sum_probs=38.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1097 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1097 (1102)
...+|.+|+++..+.-..||||. ||..|... -..||.||.++.-.
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCc
Confidence 45699999999999999999999 99999543 25699999988653
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.81 E-value=0.011 Score=71.19 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.0
Q ss_pred hhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 706 KSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 706 k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
...++..|+.++.+...+|..|+.++..+.++.
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777888888888888888888777665
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.78 E-value=0.045 Score=69.36 Aligned_cols=235 Identities=18% Similarity=0.216 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------h
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANA-------S 681 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~-------~ 681 (1102)
+|...+|+--|-.|.-....+|.+|.+... +.+.+++++...+....++|+.|.-++...+.++.... -
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE----~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~ 184 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLE----ELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRR 184 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHH
Confidence 455555555555555555555555554442 35677889999999999999999988844433322111 1
Q ss_pred hhhhHHHHHHHHHHhhhhhhhH-----H--------HhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 001316 682 MVDMQQTVTRLMSQCNEKAFEL-----E--------IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAG 748 (1102)
Q Consensus 682 ~~e~~~~i~~l~~ql~ek~~el-----~--------~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~ 748 (1102)
..+....+.+|...|++++-++ . -..|....+|.-+..+++.|.+|+.-|..|+..+.. +...-..
T Consensus 185 ~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~-L~~~~~~ 263 (775)
T PF10174_consen 185 IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYR-LRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccc
Confidence 2234455566666666666665 1 124455689999999999999985555555544411 1000010
Q ss_pred CCCCCCChHHHHHH---HHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001316 749 SSGQGTSDEYVDEL---RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 825 (1102)
Q Consensus 749 ~~~~~~~e~~~~el---~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL 825 (1102)
. ..+.+....++ ..+....-+.++.++.+...=..|...+.++++-+.......+......=.+|.+.....+.|
T Consensus 264 ~--~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L 341 (775)
T PF10174_consen 264 S--EADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML 341 (775)
T ss_pred c--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111121122 222222333455555555555555666666666666655555665555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 826 SLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 826 ~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
..++..|..+|..+...+..-.++|
T Consensus 342 qsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 342 QSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555554444444
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.77 E-value=0.014 Score=79.22 Aligned_cols=179 Identities=19% Similarity=0.223 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
.+.|++.|..+++.|+.++..+..|+-+--. ....+++.|.+|.+++.+..-+|+...+....+..+.++...+
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~------~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~e 1133 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQA------EVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEE 1133 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777633222 2336788888899999988888887777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcC-----------CCCCCCCChHHHHHHHHhhhhhHH----HHHHHHHHHHHhHHHHH
Q 001316 724 NKKLQEKVNLLEQQLACQNGDKSA-----------GSSGQGTSDEYVDELRKKVQSQET----ENEKLKLEHVQLSEENS 788 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql~~~~~~~~~-----------~~~~~~~~e~~~~el~~~~~~q~~----E~e~lk~~~~~L~ee~~ 788 (1102)
..+|+.+++..-..+....++... +.+.....+..+.++.++....+. .++++++.+..|..++.
T Consensus 1134 le~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~ 1213 (1930)
T KOG0161|consen 1134 LEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKS 1213 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766552222111111111 111112344555666554443333 34566666666666666
Q ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001316 789 GLHVQNQKLAEEAS-------YAKELASAAAVELKNLAGEVTKLSLQ 828 (1102)
Q Consensus 789 ~L~~e~~kl~~e~~-------~ak~lAsaa~~elk~l~eev~kL~~e 828 (1102)
.|..++..+..+.. .+.....+....|..|..++..+...
T Consensus 1214 ~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~ 1260 (1930)
T KOG0161|consen 1214 DLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERL 1260 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555433 33444444555666666665555443
No 52
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.69 E-value=1.1e-06 Score=107.80 Aligned_cols=248 Identities=21% Similarity=0.245 Sum_probs=148.5
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe----eCCCEEEec----CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 100 DSISVTIRFRPLSEREFQRGDEIAWY----ADGDKIVRN----EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E~~~~~~~~~~----~~~~~~~~~----~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
.+++|+|+|+|........-....+. .-..++..+ .......|.||.+|.....+..++. ...-+++..++
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~ 383 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFR-EQSQLSQSSLS 383 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHH-HHHhhhhhhhh
Confidence 39999999999874321100000000 000111111 1123346899999998888888887 34456777777
Q ss_pred CCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC--CceeEEEeehhhhhcceeeecCCCC-CCcc-eE
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT-GQNL-RV 247 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~--~~~~~v~vS~lEIYnE~i~DLL~~~-~~~l-~i 247 (1102)
| +++||++++|+++||.- ...++..-.+..+|..+.... ...+...+-+++||-....+++... .... .+
T Consensus 384 ~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 457 (568)
T COG5059 384 G----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKI 457 (568)
T ss_pred h----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7 99999999999999963 334666666688887776443 2344555566777622222222111 0000 00
Q ss_pred EeC-C-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeec
Q 001316 248 RED-A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDL 325 (1102)
Q Consensus 248 re~-~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDL 325 (1102)
... . ....+..++. ......+..... .....+..+.++.|.+++++|.+|+........... .. . +++|||
T Consensus 458 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--~~--~-~n~~~~ 530 (568)
T COG5059 458 HKLNKLRHDLSSLLSS-IPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK--EL--S-LNQVDL 530 (568)
T ss_pred HHHHHHHHHHHHhhhh-cchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhH--HH--H-hhhhhc
Confidence 000 0 0000000000 001111111122 457788899999999999999999876654322111 11 1 799999
Q ss_pred CCCCCcccccchhhhhhhHHHhhhHHHHHHHHHHhh
Q 001316 326 AGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLS 361 (1102)
Q Consensus 326 AGSEr~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~ 361 (1102)
||+|+.....-|.++++...+|++|..+|.+|.++.
T Consensus 531 ~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 531 AGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999987667789999999999999999999998764
No 53
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.65 E-value=0.017 Score=69.66 Aligned_cols=159 Identities=24% Similarity=0.236 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHH
Q 001316 651 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 730 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~e 730 (1102)
|..+.-...+++..++.+|....+ .....+.+...+++..+ .+...+++++..+=..|..+...|..|+.+
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~------a~~~t~~el~~~~s~~d---ee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQS------AIEDTQNELFDLKSKYD---EEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666644333 11133444444444333 345567889999999999999999999999
Q ss_pred HHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001316 731 VNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA 810 (1102)
Q Consensus 731 v~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsa 810 (1102)
+..|+.|+..+-... .. .++.+++......+....++.+|..+.+.+..
T Consensus 258 ~e~L~~ql~~~N~~~------~~--------------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~----------- 306 (629)
T KOG0963|consen 258 VEQLREQLAKANSSK------KL--------------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEA----------- 306 (629)
T ss_pred HHHHHHHHHhhhhhh------hh--------------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH-----------
Confidence 999999994332211 11 12334455555556677888888888888877
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001316 811 AAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 855 (1102)
Q Consensus 811 a~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d 855 (1102)
++.++.++..++...|+.++.+++..+..-+.+++--+|
T Consensus 307 ------S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 307 ------SLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455566666667777777777666666666665554444
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.62 E-value=0.23 Score=61.96 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhhc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHH
Q 001316 612 LVEQVKMLAGEIAFSSSNLKRLVDQSV-NDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVT 690 (1102)
Q Consensus 612 l~eq~k~l~~e~a~~~s~Lk~l~e~a~-~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~ 690 (1102)
||.|+++|...+-. .-+||..+.+- ...++-++|.+.|..=-....+++..|++.+.+++...- +++..-.
T Consensus 229 Lr~QvrdLtEkLet--lR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~k------eaqe~ke 300 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLET--LRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAK------EAQEAKE 300 (1243)
T ss_pred HHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 88888887766533 22322222110 001222344444433333334455555555544443211 2222223
Q ss_pred HHHHHhhhhhhhHH-------HhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 691 RLMSQCNEKAFELE-------IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 691 ~l~~ql~ek~~el~-------~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+++.++..+.--.| ..-.-...||..|.....++.+|.-+|.-||..+
T Consensus 301 ~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333221111 1111334567777777777777777777777655
No 55
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.61 E-value=3.5e-05 Score=84.07 Aligned_cols=47 Identities=30% Similarity=0.733 Sum_probs=36.7
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhhh----cCCCCCCCcccccceeec
Q 001316 1053 SHMCKVCFESPTA--------AILLPCRHFCLCKSCSL----ACSECPICRTKISDRLFA 1100 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~--------~vl~pCgH~~~C~~C~~----~~~~CPiCR~~i~~~i~i 1100 (1102)
...|.||++...+ .++.+|+|. ||..|.. ....||+||.++...++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996433 467789998 9999953 236799999999987653
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=97.60 E-value=0.14 Score=66.92 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.3
Q ss_pred EeeccCCCCCcccc
Q 001316 178 FAYGVTSSGKTHTM 191 (1102)
Q Consensus 178 faYGqTgSGKT~Tm 191 (1102)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 36899999998754
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.60 E-value=0.083 Score=70.99 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 001316 926 RKKVEESKRREEALENDLANMWVLVAKLKKE 956 (1102)
Q Consensus 926 ~~~lee~k~~~~~Le~eL~~m~vlv~kL~ke 956 (1102)
..++++++.+.+.|.......-..+.+++++
T Consensus 976 ~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 976 EERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554444433334444444
No 58
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.1e-05 Score=91.94 Aligned_cols=43 Identities=35% Similarity=0.939 Sum_probs=37.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~---------~~~CPiCR~~i~~ 1096 (1102)
+..|+||++.+...+.+.|||. ||..|... .+.||+||..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5589999999999999999999 99999433 2679999999976
No 59
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.52 E-value=4.2e-05 Score=61.88 Aligned_cols=37 Identities=38% Similarity=1.006 Sum_probs=31.8
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhcCC----CCCCCcc
Q 001316 1055 MCKVCFESP---TAAILLPCRHFCLCKSCSLACS----ECPICRT 1092 (1102)
Q Consensus 1055 ~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~~~----~CPiCR~ 1092 (1102)
.|.+|+... ...++++|||. ||..|..... .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 489999876 56889999999 9999987765 7999985
No 60
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.52 E-value=3e-05 Score=61.03 Aligned_cols=34 Identities=32% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccccccccce-EEeCCCCcccchhhhhc----CCCCCCC
Q 001316 1056 CKVCFESPTAA-ILLPCRHFCLCKSCSLA----CSECPIC 1090 (1102)
Q Consensus 1056 C~IC~~~~~~~-vl~pCgH~~~C~~C~~~----~~~CPiC 1090 (1102)
|+||++..++. ++.+|||. ||..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 68999999 99999543 3679998
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.059 Score=73.28 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cccccchhhhhHHHHHHHHHHhhhhhhhHHHhh--HhHHHHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRIIENGE-------ASMANASMVDMQQTVTRLMSQCNEKAFELEIKS--ADNRILQ 714 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki~~s~~-------~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~--a~~~~lq 714 (1102)
.+.++..+..++.+++.+++.++..+..... -...+.....+.+++.+++.++++..-++..-. ..+..++
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele 828 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVN 828 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence 3445556666666666666665555521111 011122233446667777777776655554221 1334455
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 001316 715 EQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 715 eqL~~~e~ei~~L~~ev~~Lk 735 (1102)
+.+.....++..|..++..+.
T Consensus 829 ~ei~~~~~el~~l~~~~e~l~ 849 (1311)
T TIGR00606 829 QEKQEKQHELDTVVSKIELNR 849 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433
No 62
>PRK02224 chromosome segregation protein; Provisional
Probab=97.46 E-value=0.07 Score=69.68 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=11.8
Q ss_pred EEeeccCCCCCcccc
Q 001316 177 VFAYGVTSSGKTHTM 191 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1102)
.+-+|++|||||..+
T Consensus 26 ~~i~G~Ng~GKStil 40 (880)
T PRK02224 26 TVIHGVNGSGKSSLL 40 (880)
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998754
No 63
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.46 E-value=0.082 Score=72.25 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCccc
Q 001316 156 EVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 156 ~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~T 190 (1102)
.||. ++.......+ ++-|-+|++.|-+|+|||-.
T Consensus 150 HIfa-vad~AYr~mL~~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 150 HIFA-VADEAYRNMLQDRENQSILITGESGAGKTEN 184 (1930)
T ss_pred hHHH-HHHHHHHHHHhcCCCceEeeecCCCCCcchh
Confidence 4554 4444444444 78999999999999999964
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.11 Score=69.70 Aligned_cols=59 Identities=27% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 779 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 779 ~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
+...+......+..+...+..+...++....+...++.++...+..+..+.+.+..++.
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~ 838 (1163)
T COG1196 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444444444444444433
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.45 E-value=0.099 Score=65.07 Aligned_cols=208 Identities=21% Similarity=0.224 Sum_probs=106.7
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccccchhhh
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI--IENGEASMANASMVD 684 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki--~~s~~~s~~~~~~~e 684 (1102)
+++.-|+..+..|.+.+.......+.|+.... ..+.++..|++.+++.+++.....+-+ +++.+.+.+. -
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~----EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR----A 158 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQ----EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR----A 158 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH----H
Confidence 44566777777777666554433333333221 123445566666777666655433322 3333332221 1
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ-------NKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDE 757 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~-------~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~ 757 (1102)
++| -.+|+.||.|..--+-.-+-++..+...|+ +.......|+.++..++.++ ...+.
T Consensus 159 lsQ-N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~l--------------e~K~q 223 (617)
T PF15070_consen 159 LSQ-NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKL--------------ELKSQ 223 (617)
T ss_pred HHh-HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhH
Confidence 222 235666666543222211222222222222 22222334666666666666 11222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001316 758 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQ-------NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 830 (1102)
Q Consensus 758 ~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e-------~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~ 830 (1102)
.+..|...-.+....+..|...+..|..++..|..+ ++.|.-+=...+..+..+..||....+.+..+..+|.
T Consensus 224 E~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNq 303 (617)
T PF15070_consen 224 EAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQ 303 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 333332221222222334444556666666666655 3556554455566666778899999999999999999
Q ss_pred HHHHHHH
Q 001316 831 KLEKELL 837 (1102)
Q Consensus 831 ~l~~el~ 837 (1102)
.|...|.
T Consensus 304 qL~~qls 310 (617)
T PF15070_consen 304 QLQAQLS 310 (617)
T ss_pred HHHHHHH
Confidence 9998876
No 66
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.45 E-value=0.29 Score=61.54 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=69.1
Q ss_pred chhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 001316 606 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 685 (1102)
Q Consensus 606 ~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~ 685 (1102)
..+|-.|+.|+.-+-.|=+.-...|+ +.+.|++.-..++....+.|..|..++.-........ +.
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~-----------e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~k----e~ 328 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQ-----------ESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDK----EQ 328 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch----hh
Confidence 35667778877776666555555552 2345566666677777777777776652222210000 11
Q ss_pred HHHHHHHH---HHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLM---SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 686 ~~~i~~l~---~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+. ...-. ..... ...|++-....++|+-.+..+..++..|+.++..|+.++
T Consensus 329 ~~-~~d~~~~~~s~~d-~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~ 382 (717)
T PF09730_consen 329 QS-AEDSEKERDSHED-GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKY 382 (717)
T ss_pred hh-hhhcccccccccc-cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 01111 334555555678899999999999999999999999877
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.43 E-value=0.34 Score=60.59 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHhhccccccc----hhhhhHHHHHHHHHHhhhhhhhHHHh-------------
Q 001316 651 LEREIQEKRRQMRILEQRI-------IENGEASMANA----SMVDMQQTVTRLMSQCNEKAFELEIK------------- 706 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki-------~~s~~~s~~~~----~~~e~~~~i~~l~~ql~ek~~el~~k------------- 706 (1102)
|..|++|+.|.+++|..|. ....+.....- -.+-+++..+.|..+|.+.-.+.++-
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888887766 11111111000 00123444555555555444443321
Q ss_pred ---hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 ---SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ---~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.++..|-.. -+|.+-+.||.||..|++.+
T Consensus 309 ~ad~iEmaTldKE--mAEERaesLQ~eve~lkEr~ 341 (1243)
T KOG0971|consen 309 TADAIEMATLDKE--MAEERAESLQQEVEALKERV 341 (1243)
T ss_pred HHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 2234444433 34556667777777777766
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.43 E-value=0.023 Score=62.27 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQT 852 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqw 852 (1102)
|..|..+...|.-........+.++..+.+.+..-..+.-+++.++..+|-.+..+...+.+.+..++...+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-------- 83 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-------- 83 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 444444444444444444445555555555555555555555555555555555555555444443332210
Q ss_pred hcccccccchhhhhhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 853 VNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEES 932 (1102)
Q Consensus 853 v~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~lee~ 932 (1102)
+.+. -+..+++..++....++..+|+.++..-.-..++++..+.+.
T Consensus 84 --------------~v~~--------------------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 84 --------------AVKD--------------------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred --------------cccc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 123456778888888899999999888888888888888888
Q ss_pred HHHHHHHHHHH
Q 001316 933 KRREEALENDL 943 (1102)
Q Consensus 933 k~~~~~Le~eL 943 (1102)
+.++..++.++
T Consensus 130 ~~~~~~~e~~~ 140 (239)
T COG1579 130 KERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHH
Confidence 88877777777
No 69
>PRK11637 AmiB activator; Provisional
Probab=97.42 E-value=0.096 Score=62.84 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhh
Q 001316 642 DGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKC 721 (1102)
Q Consensus 642 ~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e 721 (1102)
++.+.+++.+..+|+.++.++..+..++.+ +..++..+..+|....-.+.....++..++.++...+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~-------------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRAS-------------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766665532 3344555555555555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql 738 (1102)
.+|..++.++..++..+
T Consensus 110 ~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 110 ASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666665
No 70
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=97.42 E-value=0.00043 Score=59.80 Aligned_cols=46 Identities=33% Similarity=0.601 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 001316 906 QREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVG 958 (1102)
Q Consensus 906 e~q~aLeael~~k~~~eeEl~----------~~lee~k~~~~~Le~eL~~m~vlv~kL~ke~~ 958 (1102)
++|++|+++|++||.+++||+ ++++++.++..+|+.+| +.|++++.
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei-------~~L~~e~e 56 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI-------ERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 689999999999999999997 89999999999999999 77877764
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.42 E-value=0.23 Score=67.08 Aligned_cols=187 Identities=19% Similarity=0.161 Sum_probs=119.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHH-----------HH---hhccccccchhhhhHHHHHHHHHHhhhhhhhHHHh
Q 001316 641 PDGSKVQIQNLEREIQEKRRQMRILEQRI-----------IE---NGEASMANASMVDMQQTVTRLMSQCNEKAFELEIK 706 (1102)
Q Consensus 641 ~~~~k~Q~qkL~~el~dk~eei~~l~qki-----------~~---s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k 706 (1102)
+.+-.++...|.+++..++.++..|.... .. ...+..... ..+++..|.-|..+.+-.+-.|.+-
T Consensus 1094 ~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g-~sdL~~iv~~LR~Ekei~~tk~~~l 1172 (1822)
T KOG4674|consen 1094 ERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG-LSDLQNIVSFLRKEKEIAETKLDTL 1172 (1822)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc-hHHHHHHHHHHHhHHHHHhhhHHHH
Confidence 44445566667777777777777777766 11 111222221 3356788888999888888888888
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
..++..|+++....+..+.+|+-.+...+... .....+....+++ =+--..+..|.|.
T Consensus 1173 k~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-----------q~~a~s~~e~~~i-----------~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1173 KRENARLKQQVASLNRTIDDLQRSLTAERASS-----------QKSAVSDDEHKEI-----------LEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccchhhhhhhhHH-----------HHHHHHHHHHHHh
Confidence 88999999887777777777777666665432 0011111111111 1112345556677
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
|..|..++........-..+.+...-.++..|.....-|..+.....+++.-.+..+..|..+-
T Consensus 1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN 1294 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666666777777777777777777777777777777777777886544
No 72
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.18 Score=68.80 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHH
Q 001316 651 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 730 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~e 730 (1102)
+..++.+.+.++..|+.++..... .. .+.++..++..+..+++.-..++..+++.......+|..|+.+
T Consensus 797 ~~~ei~~l~~qie~l~~~l~~~~~----~~-------s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~k 865 (1311)
T TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDL----DR-------TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc----cC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555442222 11 2344444444444444444445555555555555555555444
Q ss_pred HHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 731 VNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 731 v~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+..++....++.+ .. .....-++.+.+|...+.....++.+++.+...|..+...+..+...+..
T Consensus 866 i~el~~~klkl~~---~l-~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 866 TNELKSEKLQIGT---NL-QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4444433211111 00 01122345566666556666666666666655555555555555555444
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.32 Score=61.69 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=12.5
Q ss_pred eeeceecCCCCChhHHHhhhh
Q 001316 142 YAFDRVFGPHANSQEVYDVAA 162 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~ 162 (1102)
|......-++..-+++|..+.
T Consensus 115 ylINGh~a~~~~vq~lF~SVq 135 (1174)
T KOG0933|consen 115 YLINGHLAQNSKVQDLFCSVQ 135 (1174)
T ss_pred EEEcCeeCchhHHHHHHHHhc
Confidence 666666555555566666443
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.35 E-value=0.35 Score=65.33 Aligned_cols=105 Identities=21% Similarity=0.336 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHH
Q 001316 610 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTV 689 (1102)
Q Consensus 610 d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i 689 (1102)
+-|+++++.+...+.......+.+ ..++++...++.....+++.+.+.+.+. ...+
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~-----------e~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 658 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEEL-----------EKQLKQINKKIEELKREITQAEQELKQA-------------EQDL 658 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------HHHH
Confidence 467777777776666554333211 2344445555555555555555444322 2234
Q ss_pred HHHHHHhhhhhhhHHHh-hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 690 TRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 690 ~~l~~ql~ek~~el~~k-~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+|..+.+....+++.. ......++++|+..+.++..+.+++..+...+
T Consensus 659 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 659 QRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333322 44666777777888888887777777777655
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.17 Score=60.89 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 788 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~ 788 (1102)
.+..+++.+.+++.||+.|+++++.|+-++ +.+.-+.+ ++++..++...|..+..
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I-----------e~Q~iS~~--------------dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQI-----------ELQGISGE--------------DVERMNLERNKLKRELN 349 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCCHH--------------HHHHHHHHHHHHHHHHH
Confidence 455566667788999999999999999998 33333333 34555566666666777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 001316 789 GLHVQNQKLAEEASYAKELASAA 811 (1102)
Q Consensus 789 ~L~~e~~kl~~e~~~ak~lAsaa 811 (1102)
++..+.+.+..+.-.-+..|..-
T Consensus 350 ~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 350 KIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 77777777766555555444443
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.29 E-value=0.036 Score=68.47 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 608 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG 673 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~ 673 (1102)
+++.|+.+++.+.++++.....+.++.++....-++.+.++..+.++...++.+++.++.++....
T Consensus 182 ~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 182 QIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666665444444454444333334445555666666666666666666664443
No 77
>PRK02224 chromosome segregation protein; Provisional
Probab=97.27 E-value=0.14 Score=66.97 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHH-------HhhHhHHHHHHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE-------IKSADNRILQEQ 716 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~-------~k~a~~~~lqeq 716 (1102)
...++..|.++++++++++..+...+...... .......+..+..++++..-.++ .-......+++.
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~------l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~ 420 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREA------VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHH
Confidence 34556667777777776666666655333221 11233444455555554433332 112334445555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHH
Q 001316 717 LQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 717 L~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+......+.+++..+..++..+
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l 442 (880)
T PRK02224 421 RDELREREAELEATLRTARERV 442 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 78
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.24 E-value=0.13 Score=69.85 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKL 727 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L 727 (1102)
+.++.+.+.+.+.++..|+.....+..--.-.......+..+..+..++++..-.++.....+..+++++.+.+.++..+
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleel 388 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443222210000000122344555555555555555555556666666666666666666
Q ss_pred HHHHHHHHHHH
Q 001316 728 QEKVNLLEQQL 738 (1102)
Q Consensus 728 ~~ev~~Lk~ql 738 (1102)
+.++..++.++
T Consensus 389 EeeLeeLqeqL 399 (1486)
T PRK04863 389 EEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 79
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=9.5e-05 Score=80.20 Aligned_cols=42 Identities=38% Similarity=0.941 Sum_probs=36.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc------CCCCCCCccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKIS 1095 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~------~~~CPiCR~~i~ 1095 (1102)
..+|.+|++.+-.....||||+ ||..|... ...||.||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4589999999999999999999 99999654 244999999764
No 80
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.22 E-value=0.0001 Score=59.49 Aligned_cols=36 Identities=36% Similarity=0.973 Sum_probs=29.0
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001316 1055 MCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICR 1091 (1102)
Q Consensus 1055 ~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCR 1091 (1102)
.|.||++.. ..++.+||||. ||..|... ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 699999965 57888999998 99999433 36799997
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.18 E-value=1.1 Score=55.39 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCch-------HHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSK-------VQIQ--------NLEREIQEKRRQMRILEQRIIE 671 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k-------~Q~q--------kL~~el~dk~eei~~l~qki~~ 671 (1102)
|.+-.+-+|-++.-+=-+...+.-.++.++|.-+-.-.- .|.. -|+++++.++.||+.|.-+.+.
T Consensus 38 dlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~ 117 (1265)
T KOG0976|consen 38 DLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLR 117 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445445556676665555555666666777765422111 1222 2777888888888888877754
Q ss_pred hhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHH
Q 001316 672 NGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQL 717 (1102)
Q Consensus 672 s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL 717 (1102)
.+.- ..-+|.+++.++.++-+-+.+++.-.+....+.+.|
T Consensus 118 lE~e------kq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 118 LEME------KQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4431 113455566666666655555554333333333333
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.18 E-value=0.041 Score=69.34 Aligned_cols=177 Identities=24% Similarity=0.300 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 788 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~ 788 (1102)
.++.++..|+....+++.||.++..|...... .-..+ .-|+++.....+...
T Consensus 454 ~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~--------------DKq~l--------------~~LEkrL~eE~~~R~ 505 (697)
T PF09726_consen 454 NERSLKSELSQLRQENEQLQNKLQNLVQARQQ--------------DKQSL--------------QQLEKRLAEERRQRA 505 (697)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH--------------HHHHHHHHHHHHHHH
Confidence 45667777777777777777777777654410 00112 223333333333333
Q ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Q 001316 789 GLHVQNQKLAE-----EASYAKELASAAA--VEL-KNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKY 860 (1102)
Q Consensus 789 ~L~~e~~kl~~-----e~~~ak~lAsaa~--~el-k~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d~~r~~ 860 (1102)
.|+.++..... |.+.|+.+|.++. .|- ..|......|..|..+|..||..+.+.+..|+.+++-+ |.|
T Consensus 506 ~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l----r~~ 581 (697)
T PF09726_consen 506 SLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL----RKY 581 (697)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 34444333222 2222222222111 111 13666777788888888888888888877777655321 211
Q ss_pred chhhhhhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 861 SDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALE 940 (1102)
Q Consensus 861 ~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~lee~k~~~~~Le 940 (1102)
. +| + -++.+.+--.|.+-.++-..||.-|.+.-.+.=+|=.-|-+++.+++-++
T Consensus 582 ~-------~e------~-------------~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~ 635 (697)
T PF09726_consen 582 E-------KE------S-------------EKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQ 635 (697)
T ss_pred H-------hh------h-------------hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00 0 12334445555555555555665555555555555555555555555444
Q ss_pred HHH
Q 001316 941 NDL 943 (1102)
Q Consensus 941 ~eL 943 (1102)
..|
T Consensus 636 ~~~ 638 (697)
T PF09726_consen 636 GQL 638 (697)
T ss_pred HHH
Confidence 433
No 83
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.18 E-value=0.00013 Score=84.97 Aligned_cols=43 Identities=28% Similarity=0.747 Sum_probs=36.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
...|.||++...+.++.||||. ||..|... ...||+|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3489999999999999999999 99999653 2569999998764
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.15 E-value=0.84 Score=58.52 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 786 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 786 e~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
.......-+.++.++...|-.+|++|...+..|+..|++|+.+.++...+
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~ 1641 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE 1641 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 33444455677778888888999999999999999999998887776655
No 85
>PHA02926 zinc finger-like protein; Provisional
Probab=97.14 E-value=0.00012 Score=77.76 Aligned_cols=45 Identities=31% Similarity=0.832 Sum_probs=34.1
Q ss_pred cccccccccc---------cceEEeCCCCcccchhhhhcC----------CCCCCCcccccceee
Q 001316 1054 HMCKVCFESP---------TAAILLPCRHFCLCKSCSLAC----------SECPICRTKISDRLF 1099 (1102)
Q Consensus 1054 ~~C~IC~~~~---------~~~vl~pCgH~~~C~~C~~~~----------~~CPiCR~~i~~~i~ 1099 (1102)
..|.||++.. +--++.+|+|. ||..|.... ..||+||..+...++
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3799999853 23578899999 999994321 339999999886554
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.57 Score=59.52 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001316 650 NLEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 650 kL~~el~dk~eei~~l~qki~~s 672 (1102)
.|..|+.-+..+++.++.++.+.
T Consensus 712 ~l~~ql~l~~~~l~l~~~r~~~~ 734 (1174)
T KOG0933|consen 712 DLKQQLELKLHELALLEKRLEQN 734 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46677777777777777766443
No 87
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.07 E-value=1.1 Score=60.92 Aligned_cols=227 Identities=20% Similarity=0.256 Sum_probs=118.9
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCC--C--CCC-----CCC--hHHHHHHHHhh---hhhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAG--S--SGQ-----GTS--DEYVDELRKKV---QSQETE 772 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~--~--~~~-----~~~--e~~~~el~~~~---~~q~~E 772 (1102)
.+.+..|..+|.+.+..|..|..+.+.++..+. +..... + .+. ... +..+.+|...+ .....+
T Consensus 578 ~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~---~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~ 654 (1822)
T KOG4674|consen 578 SEKIAELEKELEEQEQRIESLLTERDMYKELLA---ELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRE 654 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 347777888888899999999999999976552 222220 0 011 011 33333333221 122223
Q ss_pred HH-HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001316 773 NE-KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 851 (1102)
Q Consensus 773 ~e-~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiq 851 (1102)
+. .+..+...|..+...|..++.++..+..-|++.+.-..-.+-.+..+++-|..++..|..-+...+..++....++.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~ 734 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELL 734 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23456677777777777777777777777776666666666666666666666665555555444443332222221
Q ss_pred hhcccccccchhhhhhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 001316 852 TVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYR----K 927 (1102)
Q Consensus 852 wv~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~----~ 927 (1102)
-++. .......++..|+... .+ --.....++.++......+..|...+-.-|....++. .
T Consensus 735 ~a~~--------k~~~le~ev~~LKqE~------~l--l~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~ 798 (1822)
T KOG4674|consen 735 SANE--------KLEKLEAELSNLKQEK------LL--LKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMA 798 (1822)
T ss_pred hhhH--------HHHHHHHHHHHHHHHH------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0112222333332100 00 0001223444444444444445555555555555543 5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcc
Q 001316 928 KVEESKRREEALENDLANMWVLVAKLKKEVGS 959 (1102)
Q Consensus 928 ~lee~k~~~~~Le~eL~~m~vlv~kL~ke~~~ 959 (1102)
.....++++..|.++| ++|++.+..
T Consensus 799 ~k~~~e~~i~eL~~el-------~~lk~klq~ 823 (1822)
T KOG4674|consen 799 TKDKCESRIKELEREL-------QKLKKKLQE 823 (1822)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 5555668888888888 777766543
No 88
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.17 Score=59.10 Aligned_cols=99 Identities=25% Similarity=0.252 Sum_probs=71.4
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
.-.+..|+.....+|.+|..|++.++.|+-|+ .++.-+.+. .+...++...|..+
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~-----------~kq~Is~e~--------------fe~mn~Ere~L~re 383 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQL-----------RKQGISTEQ--------------FELMNQEREKLTRE 383 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------HhcCCCHHH--------------HHHHHHHHHHHHHH
Confidence 34788888889999999999999999999999 333333333 35555777788888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
..++..+.++|..+....+-.|.+.+. +++|+-.+-.-|.+++-
T Consensus 384 L~~i~~~~~~L~k~V~~~~leaq~~~~-------slek~~~~~~sl~~~i~ 427 (622)
T COG5185 384 LDKINIQSDKLTKSVKSRKLEAQGIFK-------SLEKTLRQYDSLIQNIT 427 (622)
T ss_pred HHHhcchHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 888888888998888888877777655 44444444444444433
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.04 E-value=0.2 Score=52.80 Aligned_cols=95 Identities=31% Similarity=0.354 Sum_probs=72.0
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhh----HHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQ----ETENEKLKLEHVQ 782 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q----~~E~e~lk~~~~~ 782 (1102)
+-++..|+..+...+..++.|..++..|+.++... + +..+. ..|+++||.....
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~---------------------Q-qal~~aK~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL---------------------Q-QALQKAKALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999888211 1 11111 3577888998888
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 783 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 783 L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
|+|++.+|..+...+.+ |-..|..+|..|..+|-++-.+..
T Consensus 79 lEE~~~~L~aq~rqlEk--------------E~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEK--------------EQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99988888888887777 566666788888888888777644
No 90
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.04 E-value=0.00025 Score=79.98 Aligned_cols=42 Identities=40% Similarity=0.991 Sum_probs=36.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc------CCCCCCCcccccce
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKISDR 1097 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~------~~~CPiCR~~i~~~ 1097 (1102)
.|.||-++.+++-+-||||+ +|..|-.. -..||.||..|.+.
T Consensus 371 LCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 89999999999999999999 99999332 25699999998774
No 91
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.04 E-value=0.51 Score=57.44 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHhhcccccc------chhhhhHHHHHHHHHHhhhhhhhHHHhhHhH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRI----------IENGEASMAN------ASMVDMQQTVTRLMSQCNEKAFELEIKSADN 710 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki----------~~s~~~s~~~------~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~ 710 (1102)
.+..|+.|++.++-+|..|+... +.++.++... ....++...|.+|+.++++..-.|+.+.-..
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45568888888888888888776 2222211111 1222445556666666665555555442233
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
..-++.+......+..|+.++..++.
T Consensus 137 ~~~re~~~~~~~~l~~leAe~~~~kr 162 (546)
T KOG0977|consen 137 RGAREKLDDYLSRLSELEAEINTLKR 162 (546)
T ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33333333333333334444333333
No 92
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.95 E-value=0.00048 Score=52.55 Aligned_cols=34 Identities=41% Similarity=1.174 Sum_probs=29.8
Q ss_pred cccccccccceEEeCCCCcccchhhhh-----cCCCCCCC
Q 001316 1056 CKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPIC 1090 (1102)
Q Consensus 1056 C~IC~~~~~~~vl~pCgH~~~C~~C~~-----~~~~CPiC 1090 (1102)
|.||++.....+++||||. ||..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 8899999999999999999 9999964 34569988
No 93
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.92 E-value=0.0006 Score=53.91 Aligned_cols=39 Identities=44% Similarity=1.088 Sum_probs=29.8
Q ss_pred ccccccccccceE-EeCCCCcccchhhhh-----cCCCCCCCcccc
Q 001316 1055 MCKVCFESPTAAI-LLPCRHFCLCKSCSL-----ACSECPICRTKI 1094 (1102)
Q Consensus 1055 ~C~IC~~~~~~~v-l~pCgH~~~C~~C~~-----~~~~CPiCR~~i 1094 (1102)
.|.||++.....+ +.||||. ||..|.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999884444 4559999 9999954 245699999764
No 94
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.91 E-value=2 Score=58.37 Aligned_cols=78 Identities=19% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhhh
Q 001316 778 LEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES--------MHSRGAA 849 (1102)
Q Consensus 778 ~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~--------~~~we~q 849 (1102)
.+.....++..........+..+...++..=..+..+|..+..++..+..+..+|...|...+.+ ...|+..
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~t 555 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQT 555 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHH
Confidence 33333444444444444444444444555555566677777778888888888888775543333 3455555
Q ss_pred hhhhcc
Q 001316 850 MQTVNG 855 (1102)
Q Consensus 850 iqwv~d 855 (1102)
|-.|-|
T Consensus 556 IGKVid 561 (1201)
T PF12128_consen 556 IGKVID 561 (1201)
T ss_pred hHhhCC
Confidence 555554
No 95
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.91 E-value=0.74 Score=58.53 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
.++..|..+|.+++-+++.|.|-+....--+.+. .--..++..+..+-+.-+--|.++..|..-++.++.+..--+.
T Consensus 198 enll~lr~eLddleae~~klrqe~~e~l~ea~ra---~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~ 274 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA---DRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNR 274 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhH
Confidence 4556677777777777777777663221111110 0011234455555555556666777788889999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 001316 726 KLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 802 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~ 802 (1102)
.|.++-..|+.||.+ -.+++++ ..-+..|--+++++.-...|++-.+.+...|.+|+..|..+...|..-|.
T Consensus 275 vLleekeMLeeQLq~----lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 275 VLLEEKEMLEEQLQK----LRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred HHHHHHHHHHHHHHH----HHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999833 2334444 45566677778777777777887888888888888888888877766433
No 96
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.90 E-value=0.00031 Score=76.42 Aligned_cols=43 Identities=23% Similarity=0.592 Sum_probs=37.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
...|.||.+..+--++.||||. ||.-|.... +.||+||..+..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 3479999999999999999999 999997653 679999987654
No 97
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.53 Score=60.79 Aligned_cols=65 Identities=25% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
+.|+++-.-+.++...++.++..+....-.+++-+.-|..||+.|...-+........+...|.+
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444445555444444444444444444443
No 98
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.86 E-value=0.00029 Score=78.15 Aligned_cols=41 Identities=29% Similarity=0.894 Sum_probs=36.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
-|.||++=..-.|+.||+|. ||.-|.... +.||.|+.++..
T Consensus 25 RC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 69999999999999999999 999996543 779999998865
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.85 E-value=0.71 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.++..++..|.++..+|+.+.+.|..
T Consensus 147 q~lqtrl~~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 147 QDLQTRLKTLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777888888877777655
No 100
>PRK11637 AmiB activator; Provisional
Probab=96.84 E-value=0.098 Score=62.76 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 777 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 777 k~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
+++...+..+...+..++..+..+........+....+|+.+..++.++..+...++.++...+..+..+...+
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444555555666666666666666666666666655555444433
No 101
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.83 E-value=2.1 Score=53.67 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchh--hhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhh
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASM--VDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKC 721 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~-s~~~~~~--~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e 721 (1102)
+..++...+.|.+++..+..|...+...... .+...+. ..++.++..|..+++...-.|.....++..|-....+.+
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqE 121 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQE 121 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544221111 1111122 235667777888888777666665667788877778999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql 738 (1102)
.++.+|+.++.+++...
T Consensus 122 erL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 122 ERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988776
No 102
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.82 E-value=0.00051 Score=55.13 Aligned_cols=34 Identities=35% Similarity=0.969 Sum_probs=25.7
Q ss_pred cccccccccceEEeCCCCcccchhhhhcC--------CCCCCC
Q 001316 1056 CKVCFESPTAAILLPCRHFCLCKSCSLAC--------SECPIC 1090 (1102)
Q Consensus 1056 C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--------~~CPiC 1090 (1102)
|.||++-.++-|.++|||. ||..|..+. -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999995432 249988
No 103
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.81 E-value=0.00055 Score=57.41 Aligned_cols=41 Identities=32% Similarity=0.766 Sum_probs=36.1
Q ss_pred ccccccccccceEEeCCCCcccchhh--hhcCCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSC--SLACSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C--~~~~~~CPiCR~~i~~ 1096 (1102)
.|..|......-+++||||+ +|..| ..+..-||+|..+|..
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 69999999999999999999 89999 4556779999999864
No 104
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.76 E-value=0.19 Score=55.46 Aligned_cols=148 Identities=17% Similarity=0.223 Sum_probs=88.8
Q ss_pred HHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhh
Q 001316 689 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 768 (1102)
Q Consensus 689 i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~ 768 (1102)
|..++.++++..-.+......+....+.+..++.++..|+..+..|...|..+ ++-+.....+|..
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~--------------eerL~~~~~kL~~ 68 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA--------------EERLEEATEKLEE 68 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--------------HCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHH
Confidence 45566677766666666666666777777788888888888888777666111 1111122223333
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 848 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~ 848 (1102)
-....++..+....|..........+..|......|+..|..+..-+....-++.-+..+..+.+..+..+-..+..-+.
T Consensus 69 ~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~ 148 (237)
T PF00261_consen 69 AEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEE 148 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence 33445556666666666666666677777777777777777766666555555555555555555555544444444443
Q ss_pred hh
Q 001316 849 AM 850 (1102)
Q Consensus 849 qi 850 (1102)
++
T Consensus 149 el 150 (237)
T PF00261_consen 149 EL 150 (237)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 105
>PRK03918 chromosome segregation protein; Provisional
Probab=96.75 E-value=2.4 Score=55.54 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001316 923 DEYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 923 eEl~~~lee~k~~~~~Le~eL 943 (1102)
+++..+++++..++..|..++
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.73 E-value=1.3 Score=60.58 Aligned_cols=149 Identities=17% Similarity=0.157 Sum_probs=77.3
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCC---CCCCCChHHHHHHHHhhhh
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGS---SGQGTSDEYVDELRKKVQS 768 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~---~~~~~~e~~~~el~~~~~~ 768 (1102)
++.++.+..-+++....+...+++++.+...+...++.++..+++.+..+-..+.... -...+-...+..+..++..
T Consensus 374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee 453 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQE 453 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444455555555555555555555555444421111111110 0011223444455667777
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH-----HHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY-----AKELASA---AAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~-----ak~lAsa---a~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
...++.++++++..+......+......+..+... |..-|-. -..+++.+++.+.-+..+...|++.+...+
T Consensus 454 ~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~ 533 (1486)
T PRK04863 454 ATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQ 533 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888887777776654322 2222222 234566667777777777777766555333
No 107
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.72 E-value=0.42 Score=61.84 Aligned_cols=75 Identities=27% Similarity=0.282 Sum_probs=48.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 761 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 761 el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
++...++++..+..++......|.+.+.+|..++.++..+...-+..-...-.+++++.+++.-|...+..+..+
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~ 645 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKE 645 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 344556666666777778888888888888877777777666666665555555555555555555554444443
No 108
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.71 E-value=1.9 Score=53.31 Aligned_cols=219 Identities=22% Similarity=0.265 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHHHHHhhch----HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 001316 608 QMDLLVEQVKMLAGEIAFSS----SNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 683 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~----s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~ 683 (1102)
+++..++++..+..|++-.. .++++..+ |......-..+++-|..+|...++.++....-..++..--.. ...
T Consensus 131 eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aee-a~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~--~~~ 207 (522)
T PF05701_consen 131 ELDSVKQELEKLRQELASALDAKNAALKQAEE-AVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIE--IAA 207 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 45566666666666665543 33332222 222222223456678888888888888765443333221111 112
Q ss_pred hhHHHHHHHHHHhhhhhhhHH---HhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHhhhccCCcCCCCCCCCChHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELE---IKSADNRILQEQLQNKCSENKKLQEKVNLLEQ-QLACQNGDKSAGSSGQGTSDEYV 759 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~---~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~-ql~~~~~~~~~~~~~~~~~e~~~ 759 (1102)
+..+....++..|.+..-+++ ..-...+.++..|......+..|+.++..... .+ ... .+.....
T Consensus 208 ~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l------~~~-----~~~~~~~ 276 (522)
T PF05701_consen 208 EREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKL------EEE-----AEAKEKS 276 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhh-----HHhhhhh
Confidence 333444455555544443333 22345566667777788888888888776665 22 000 0112223
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001316 760 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 839 (1102)
Q Consensus 760 ~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~ 839 (1102)
..+...+.....|+++.+.......++...|..-+..|..+....|.-....--........|..|..+..++..+|.++
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 33344455555666666666665555555555555555554444444433333333333334444444555555555444
Q ss_pred H
Q 001316 840 R 840 (1102)
Q Consensus 840 k 840 (1102)
+
T Consensus 357 ~ 357 (522)
T PF05701_consen 357 K 357 (522)
T ss_pred H
Confidence 4
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.71 E-value=0.99 Score=53.33 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001316 614 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGE 674 (1102)
Q Consensus 614 eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~ 674 (1102)
+|++....+++.....+. ..+.+.++|+++|++.+.+|..++..+.++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~-----------~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 38 KQLKQIQKEIAALEKKIR-----------EQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666777776666552 23456678999999999998888887766544
No 110
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.71 E-value=0.00058 Score=54.07 Aligned_cols=34 Identities=38% Similarity=1.147 Sum_probs=29.1
Q ss_pred cccccccccceE-EeCCCCcccchhhhhc------CCCCCCC
Q 001316 1056 CKVCFESPTAAI-LLPCRHFCLCKSCSLA------CSECPIC 1090 (1102)
Q Consensus 1056 C~IC~~~~~~~v-l~pCgH~~~C~~C~~~------~~~CPiC 1090 (1102)
|.||++.....+ ++||||. ||..|... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 899999999988 9999999 99999432 3559988
No 111
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.62 E-value=0.001 Score=57.54 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=35.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
.|.||.+-..+.|+.||||. ||..|... -..||+|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 69999999999999999998 99999543 3579999998843
No 112
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.61 E-value=3 Score=51.49 Aligned_cols=141 Identities=23% Similarity=0.222 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 763 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~ 763 (1102)
.++..+..++.+|++....|.....+...|+..+.....++.....++..++++. ......+..|+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e--------------~~a~~~v~~L~ 343 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE--------------KEASSEVSSLE 343 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHhhHH
Confidence 4455566666666666666665555555555555555555555555555555444 11222333444
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 764 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 764 ~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
..+..=..+++-.+..-....+....|...++++..++..|+.-+..+-.|+..+..+++.......-.+..|.+
T Consensus 344 ~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 344 AELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222333333333333334445556667777777777777777776666666666666666655555554443
No 113
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.60 E-value=0.43 Score=54.10 Aligned_cols=180 Identities=21% Similarity=0.243 Sum_probs=112.7
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhh---cCC---CCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQS---VND---PDG-----------SKVQIQNLEREIQEKRRQMRILEQRIIE 671 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a---~~~---~~~-----------~k~Q~qkL~~el~dk~eei~~l~qki~~ 671 (1102)
+....+++..|.-|+......|+-++.-. ... +.. .-.+++.|.+.++.+++|+..|.....+
T Consensus 106 L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 106 LGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777766666555221 111 111 1257889999999999999888876543
Q ss_pred hhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCC
Q 001316 672 NGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG 751 (1102)
Q Consensus 672 s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~ 751 (1102)
....+.. -...-++-|.+--.||. ..++.+..|.+.|..+..++...|++|..|..++
T Consensus 186 L~~et~~--~EekEqqLv~dcv~QL~-------~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi------------- 243 (306)
T PF04849_consen 186 LKTETDT--YEEKEQQLVLDCVKQLS-------EANQQIASLSEELARKTEENRRQQEEITSLLSQI------------- 243 (306)
T ss_pred hhHHHhh--ccHHHHHHHHHHHHHhh-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3221110 00011222222222222 3355777888888888888888888888887666
Q ss_pred CCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 752 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 818 (1102)
Q Consensus 752 ~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l 818 (1102)
.++.+++.+-..|.++|.+-...-.+....|..|+.-+.+.|..-.++-..|-.|+|.+
T Consensus 244 --------vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 244 --------VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred --------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777778888887777777777888888777776666666666665555554
No 114
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.58 E-value=0.34 Score=62.31 Aligned_cols=177 Identities=23% Similarity=0.310 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhhHHHHHHHHHHhhhhhhhHHHh-------hHhHHHHHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIK-------SADNRILQEQ 716 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~-s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k-------~a~~~~lqeq 716 (1102)
.-|+..+...++.+++.++.+..++...... ....+...+.+..+.++..+-+..+-+++.- .-+...++++
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999322111 1111123366777777777777666666633 2255667778
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 001316 717 LQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQK 796 (1102)
Q Consensus 717 L~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~k 796 (1102)
.+++++.+..+..+++.++.++.++-+ ....++...+.+-.-+++.|++++..|.+....|..+.+.
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~-------------~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEK-------------QTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988832221 1112333333333456778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001316 797 LAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 834 (1102)
Q Consensus 797 l~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~ 834 (1102)
+.+++..-.+-...-..++..|.-.+..-+.+...|.+
T Consensus 427 ~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 427 VKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98887777777777667777777766666655555544
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.55 E-value=0.091 Score=63.67 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHH
Q 001316 612 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSK----VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQ 687 (1102)
Q Consensus 612 l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k----~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~ 687 (1102)
|.-++.+|.+-+.-.++.++-++|.-.+...+.= ....++..+|+.+++|+..|..|+..+...-. ....
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~------~~re 141 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR------GARE 141 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------hhHH
Confidence 4455666666666666666665554333222211 23447899999999999999999977643211 1223
Q ss_pred HHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 688 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+.....-|+.++-++..-.+..+.|.+.+.....++.-|+.+|+..+.++
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444455555555555566777777777777777777777777777665
No 116
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.43 E-value=3.3 Score=52.41 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=43.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001316 760 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 839 (1102)
Q Consensus 760 ~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~ 839 (1102)
.++..+.+....-++++|.++..|..++..|-..+.......+-+..-.-.+.-+..+|.+.|+++..+-.+++.+++..
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~ 492 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQ 492 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444455555566777777777777777666666555543333322222344455555555555555555555444433
No 117
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0018 Score=72.37 Aligned_cols=45 Identities=31% Similarity=0.969 Sum_probs=39.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
..+..|+||+..+.++||.||+|. .|..|... ++.|=.|.+.|..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 355689999999999999999999 99999643 5779999998765
No 118
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.41 E-value=2.1 Score=53.15 Aligned_cols=214 Identities=19% Similarity=0.158 Sum_probs=94.4
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhH
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 686 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~ 686 (1102)
|-+--+.+|+|.-.-|+...++.|..+.++-.+ -.-.++..-.++++|.+++..++-...+- -
T Consensus 127 ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA----k~~eIf~~~~~L~nk~~~lt~~~~q~~tk-------------l 189 (1265)
T KOG0976|consen 127 DTIQGAQDDKKENEIEIENLNSRLHKLEDELSA----KAHDIFMIGEDLHDKNEELNEFNMEFQTK-------------L 189 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh----hhHHHHHHHHHHhhhhhHHhHHHHHHHHH-------------H
Confidence 444556666666666666666666655555544 12346666666777776666655443221 1
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhh
Q 001316 687 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 766 (1102)
Q Consensus 687 ~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~ 766 (1102)
.+.+++..++.++.-.|.+...++...-..+++-..--...-+++.+|-.+...+.-++... ....+-+.++..+.+.+
T Consensus 190 ~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~-s~i~E~d~~lq~sak~i 268 (1265)
T KOG0976|consen 190 AEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTC-SMIEEQDMDLQASAKEI 268 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhh-HHHHHHHHHHHHHHHHH
Confidence 23344555555555555544222222212221111111122223333333321111111000 00011111111111111
Q ss_pred hhhHHHHHHHHHHHHHhHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001316 767 QSQETENEKLKLEHVQLSEE-------NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 839 (1102)
Q Consensus 767 ~~q~~E~e~lk~~~~~L~ee-------~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~ 839 (1102)
..- ..++|.....|..| .+.+..+++-+..--+.|.+-...| -|-|..++-+|..|++-+...|..+
T Consensus 269 eE~---m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqa---tkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 269 EEK---MRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQA---TKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 11233333333333 3334444444443333333333222 3445568899999999999998888
Q ss_pred HHhhh
Q 001316 840 RESMH 844 (1102)
Q Consensus 840 k~~~~ 844 (1102)
|..+.
T Consensus 343 rrk~e 347 (1265)
T KOG0976|consen 343 RRKAE 347 (1265)
T ss_pred HHhhc
Confidence 76643
No 119
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.36 E-value=2.1 Score=48.71 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHH-HhhhhhHHHHHHHHHHHHHhHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR-KKVQSQETENEKLKLEHVQLSEEN 787 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~-~~~~~q~~E~e~lk~~~~~L~ee~ 787 (1102)
-+..|+.++...+.+...++.++.+|+..- + +|. .--+.|..=+..|-.....|..+|
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EK--------------------V-dlEn~LE~EQE~lvN~L~Kqm~~l~~eK 194 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREK--------------------V-DLENTLEQEQEALVNRLWKQMDKLEAEK 194 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------------H-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665422 1 111 111334444677778888888888
Q ss_pred HhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 788 SGLHVQNQKLAEEASYAKE---------LASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 788 ~~L~~e~~kl~~e~~~ak~---------lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
..|...++.--..-....+ -+......++.|..+|.+|..+......+..
T Consensus 195 r~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 195 RRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887753222222222 2334455566666666666666655555543
No 120
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.36 E-value=1.9 Score=49.38 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++..++..|.+.......|+.++..|+..+
T Consensus 104 el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 104 ELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 555566666655555555665555555555
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.34 E-value=5.3 Score=51.30 Aligned_cols=78 Identities=27% Similarity=0.329 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 724 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei 724 (1102)
|..+..+.-||..|..|+..+..++..... ...++.+.|..|+.+|..+..+.+.--+|+..|+-.|..+...+
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~------~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEE------QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344667777777777777777777744333 11244555555555555555554444444444444444433333
Q ss_pred HHHH
Q 001316 725 KKLQ 728 (1102)
Q Consensus 725 ~~L~ 728 (1102)
...+
T Consensus 360 ~kk~ 363 (775)
T PF10174_consen 360 EKKQ 363 (775)
T ss_pred HHHH
Confidence 3333
No 122
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.31 E-value=3.2 Score=51.37 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.3
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556899999998754
No 123
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.28 E-value=5.8 Score=50.98 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhh
Q 001316 628 SNLKRLVDQSVNDPDGS----------KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN 697 (1102)
Q Consensus 628 s~Lk~l~e~a~~~~~~~----------k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ 697 (1102)
-+|+-+.+.|++.-..- |.+++.|.++++-+.++-+-|+-++...+..+-+. ....+|-.++.+|+
T Consensus 236 deldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~----tleseiiqlkqkl~ 311 (1195)
T KOG4643|consen 236 DELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA----TLESEIIQLKQKLD 311 (1195)
T ss_pred hHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC----ChHHHHHHHHHHHH
Confidence 34555677777654333 34556677777777777777777774444433221 23344454544444
Q ss_pred h
Q 001316 698 E 698 (1102)
Q Consensus 698 e 698 (1102)
-
T Consensus 312 d 312 (1195)
T KOG4643|consen 312 D 312 (1195)
T ss_pred H
Confidence 3
No 124
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.47 Score=58.96 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHccc
Q 001316 438 QREISSLKEELDQLKRGI 455 (1102)
Q Consensus 438 ~~ei~~Lk~el~~~~~~~ 455 (1102)
-.+...++++|-......
T Consensus 453 l~dn~~~kEeLlrV~l~~ 470 (970)
T KOG0946|consen 453 LQDNDQLKEELLRVPLAV 470 (970)
T ss_pred HHHhHHHHHHHHhhhhcc
Confidence 445667777776654433
No 125
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.21 E-value=0.0015 Score=52.65 Aligned_cols=27 Identities=37% Similarity=0.987 Sum_probs=16.8
Q ss_pred cccccccccc----eEEeCCCCcccchhhhhcC
Q 001316 1056 CKVCFESPTA----AILLPCRHFCLCKSCSLAC 1084 (1102)
Q Consensus 1056 C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~ 1084 (1102)
|.||.+ ..+ .+++||||. ||..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 899999 777 788999999 999995543
No 126
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.20 E-value=4 Score=51.91 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 762 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 762 l~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++++..+...|+.+|+.+....+|.+..|+.+++.|..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777778888888888888888888877765554
No 127
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.17 E-value=0.0027 Score=70.80 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=39.4
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccccee
Q 001316 1050 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISDRL 1098 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~------~~CPiCR~~i~~~i 1098 (1102)
++..-.|.||-..-+-..++||+|. +|..|+.+. ..||+||+.-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3344479999999999999999999 999998775 56999998755543
No 128
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.16 E-value=0.4 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 821 EVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 821 ev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
.|.+|..++.+|+.+|...|....
T Consensus 198 ~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677777665555543
No 129
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.09 E-value=6.1 Score=51.23 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcccccccc
Q 001316 404 ETHNTLKFASRAKRVEIYAS 423 (1102)
Q Consensus 404 ETlsTLrfA~rak~I~~~~~ 423 (1102)
-+..|=+|-.||+.|+...+
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv 1195 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGV 1195 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 35556677788888875543
No 130
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.08 E-value=0.057 Score=51.31 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 790 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 790 L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
|..|+..+..++......+..+..++.++++.+.+|..++++.+++|++++.+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~ 53 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRS 53 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999877
No 131
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1.4 Score=55.07 Aligned_cols=173 Identities=20% Similarity=0.198 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----ccccccchhhhhHHHHHHHHHHhhhhhhhHH------Hh--------hHhH
Q 001316 650 NLEREIQEKRRQMRILEQRIIENG-----EASMANASMVDMQQTVTRLMSQCNEKAFELE------IK--------SADN 710 (1102)
Q Consensus 650 kL~~el~dk~eei~~l~qki~~s~-----~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~------~k--------~a~~ 710 (1102)
-..+++++..+++..|..++.... ..+.+.+-. +||..+.+|--|+.+++-.+= ++ .-+.
T Consensus 427 ~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e-d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek 505 (698)
T KOG0978|consen 427 DAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE-DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEK 505 (698)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888882222 222222222 678888888888887764322 11 1144
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL 790 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L 790 (1102)
.++.+++....+....+...+..|+.|+.. +. ......+.++... . .-++.++.....+......|
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~-lt---------~~~~~l~~el~~~--~--~~le~~kk~~~e~~~~~~~L 571 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELKIGKLEEQERG-LT---------SNESKLIKELTTL--T--QSLEMLKKKAQEAKQSLEDL 571 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---------HhhhhhHHHHHHH--H--HHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666666666666510 00 0011122222211 1 11455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 791 HVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 791 ~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
..++++....++-....-..+..+|..+....-++..++.+|..+|+
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555556666666555555555555555555555544
No 132
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.99 E-value=7.2 Score=49.50 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=90.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ-------- 828 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e-------- 828 (1102)
+-++||+ +.||.+|++....++.||..|...++........+++-.+.--..+.-|.+.|..|..-
T Consensus 257 DLfSEl~------~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~ 330 (717)
T PF09730_consen 257 DLFSELN------LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQS 330 (717)
T ss_pred hhhhhcc------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh
Confidence 3445555 78899998888888888888887777777766555555554333333333333333220
Q ss_pred -----------------------HHHHHHHHHHHHHhhhhhhhhhhhhcccccccchhhhhhhccccccccccccCCccc
Q 001316 829 -----------------------NAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSD 885 (1102)
Q Consensus 829 -----------------------~~~l~~el~a~k~~~~~we~qiqwv~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~ 885 (1102)
..-|+.+|..+-..+..|.+.+.-+-+ -...+..+-.++...++.
T Consensus 331 ~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~----k~~~~~~~~~~ek~~~~~-------- 398 (717)
T PF09730_consen 331 AEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKS----KYNELEERYKQEKDRLES-------- 398 (717)
T ss_pred hhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------
Confidence 122344455555555555444422211 000000011111110000
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001316 886 DFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 947 (1102)
Q Consensus 886 ~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~lee~k~~~~~Le~eL~~m~ 947 (1102)
.+...|.....+..+.....++-..|+++++.-..+-.|....+.-+.-.+..+..+|+++.
T Consensus 399 e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 399 EVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001112222233333334455567777777777777777778888888888888888876
No 133
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.95 E-value=0.0039 Score=54.13 Aligned_cols=39 Identities=41% Similarity=1.042 Sum_probs=20.8
Q ss_pred ccccccccccce-EEeCCCCcccchhhhhcC--CCCCCCcccc
Q 001316 1055 MCKVCFESPTAA-ILLPCRHFCLCKSCSLAC--SECPICRTKI 1094 (1102)
Q Consensus 1055 ~C~IC~~~~~~~-vl~pCgH~~~C~~C~~~~--~~CPiCR~~i 1094 (1102)
.|.+|.+-.+.. +++-|.|. ||..|...+ ..||+|+.|-
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 799999987776 47999999 999997665 6699999875
No 134
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.88 E-value=4.1 Score=50.01 Aligned_cols=119 Identities=25% Similarity=0.184 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 788 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~ 788 (1102)
.+..+++|+...+.-|..|+..+..-..++ .+++.. ...+...-.++++ .=..|.++-++....|+.+..
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el---~~~~s~---~dee~~~k~aev~----lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDTQNEL---FDLKSK---YDEEVAAKAAEVS----LIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHh---hhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888887777766666555 111111 0111111122222 113467777889999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 789 GLHVQNQKLAEEASYAK-ELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 789 ~L~~e~~kl~~e~~~ak-~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.|..++.+.+.....++ +...+...-|--...++.+|.++..+++.-+.
T Consensus 260 ~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 260 QLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888655551 12222223333344455555555555544433
No 135
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=2.5 Score=52.56 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=11.2
Q ss_pred CCchhhHHHHHHHHhh
Q 001316 198 PGIIPLAIKDVFSIIQ 213 (1102)
Q Consensus 198 ~GIipr~~~~LF~~i~ 213 (1102)
.||-+.++..|+....
T Consensus 44 S~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 44 SGLPTPVLAQIWALSD 59 (1118)
T ss_pred cCCChHHHHHHHHhhh
Confidence 4777777888876553
No 136
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=6.4 Score=50.45 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001316 651 LEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki~~s 672 (1102)
-.+++++...+++.|+.....+
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~ 249 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSA 249 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc
Confidence 4466666666666666655433
No 137
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.85 E-value=1.2 Score=54.53 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCC-CCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c------
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND-PDGS---KVQIQNLEREIQEKRRQMRILEQRIIENGE---A------ 675 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~-~~~~---k~Q~qkL~~el~dk~eei~~l~qki~~s~~---~------ 675 (1102)
.+-|.+|++.+..++......|..+..+..-. |+.. ..++..++.++...+.++..++.++..... .
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~ 242 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL 242 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 57788888888888888888888887665432 2221 134455666666666666555555511111 0
Q ss_pred ccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCC
Q 001316 676 SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS 755 (1102)
Q Consensus 676 s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~ 755 (1102)
.........+...+.+++.++.+....| .+.--...+|+.+++.++.++.+...............
T Consensus 243 ~~~~~~~~~l~~~l~~l~~~l~~l~~~y--------------~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~ 308 (498)
T TIGR03007 243 AGSSVANSELDGRIEALEKQLDALRLRY--------------TDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIA 308 (498)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHh--------------cccChHHHHHHHHHHHHHHHHHhhccccccCccccccc
Confidence 0001111233444555555554433333 33344445555555666655532222111111112223
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 756 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 756 e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
.+...+|...+....++++.++.+...|..+...++.+...+.. ...++..|.-+++.....-..+-+.
T Consensus 309 ~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-----------~~~el~~L~Re~~~~~~~Y~~l~~r 377 (498)
T TIGR03007 309 NPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPE-----------VEAELTQLNRDYEVNKSNYEQLLTR 377 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444455555555555555544444444433332 4455555554444443333333333
No 138
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.84 E-value=0.0022 Score=66.51 Aligned_cols=52 Identities=21% Similarity=0.690 Sum_probs=42.2
Q ss_pred CCCccccccccccccccceEEeCCCCcccchhhhhc-C---CCCCCCcccccceeec
Q 001316 1048 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-C---SECPICRTKISDRLFA 1100 (1102)
Q Consensus 1048 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-~---~~CPiCR~~i~~~i~i 1100 (1102)
+...-|..|.||.....+.|+..|||. ||..|+.. + ..|-+|.+...+.+.|
T Consensus 191 ~~e~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 191 PGEKIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred CCCCCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 444467799999999999999999999 99999654 2 6699999877665543
No 139
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0026 Score=70.62 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT 1092 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~ 1092 (1102)
...|.||++.....+++||||. ||..|.... -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 3479999999999999999999 999997664 36999994
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.69 E-value=0.0028 Score=80.67 Aligned_cols=67 Identities=33% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHH---HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 759 VDELRKKVQSQETENEKLKL---EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 759 ~~el~~~~~~q~~E~e~lk~---~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
+.+|......|..|+..|++ -+..|.|++..|...++.+.. +.+++..+..++.+|+.+
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~------------------~~~el~~lq~e~~~Le~e 320 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEE------------------LEEELAELQLENEKLEDE 320 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 33444444445555555543 344455666666666655544 556777777888888887
Q ss_pred HHHHHHhhhhhhhhh
Q 001316 836 LLAARESMHSRGAAM 850 (1102)
Q Consensus 836 l~a~k~~~~~we~qi 850 (1102)
+. .|.+-+
T Consensus 321 l~-------sW~sl~ 328 (722)
T PF05557_consen 321 LN-------SWESLL 328 (722)
T ss_dssp ---------------
T ss_pred HH-------HHHHHH
Confidence 66 676533
No 141
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0027 Score=70.09 Aligned_cols=47 Identities=19% Similarity=0.601 Sum_probs=40.5
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1098 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~i 1098 (1102)
.-|..|.||.....+-|+..|+|. ||..|+..- ..|++|.+.+.+.+
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 356789999999999999999999 999997543 56999999987754
No 142
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0061 Score=67.26 Aligned_cols=41 Identities=32% Similarity=0.771 Sum_probs=32.4
Q ss_pred cccccccccc---cceEEeCCCCcccchhhhhc-C----CCCCCCccccc
Q 001316 1054 HMCKVCFESP---TAAILLPCRHFCLCKSCSLA-C----SECPICRTKIS 1095 (1102)
Q Consensus 1054 ~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~-~----~~CPiCR~~i~ 1095 (1102)
-.|.|||++. --++++||.|. |=..|... + .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3799999854 23888999999 99999433 1 56999999875
No 143
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.59 E-value=4.9 Score=50.25 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
...+..++..+...............+....+.+++..+..+...++.+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~e 398 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKE 398 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666655555444444443333444444444444444444443
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=9.4 Score=47.80 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=34.8
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 755 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 755 ~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.-..|+++.....-.+.||+.|+++..++.+-+.+|--|-+.|..
T Consensus 470 ~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 470 QKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 345677777666667888888888888888888888888877776
No 145
>PRK09039 hypothetical protein; Validated
Probab=95.55 E-value=0.99 Score=52.70 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001316 767 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 828 (1102)
Q Consensus 767 ~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e 828 (1102)
..+..++.+...++..|..+...|..++..+..+...++..-..+-+.|..|..++....++
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666666666666666655555555555555566666555555443
No 146
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=7 Score=47.12 Aligned_cols=23 Identities=13% Similarity=0.357 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHhhchHH
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSN 629 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~ 629 (1102)
.+++.||-.++.|..|+.+.+.+
T Consensus 8 q~ve~lr~eierLT~el~q~t~e 30 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEE 30 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888888888888877644
No 147
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=6.3 Score=50.53 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 688 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++.+.-.+|++.+.+..--......+..+|...+.++..+..++..|...|
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l 281 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKL 281 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444333333555666667677777766666666666655
No 148
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.49 E-value=3.9 Score=53.13 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++..+.+....+++....|..+-|.+..+.........||.++++.++.+++..
T Consensus 300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455566666666677777777777777777644
No 149
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=9.9 Score=47.38 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHh
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSG 789 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~ 789 (1102)
+....++.....|+.|.+++++.+..+.++-..
T Consensus 237 ~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~ 269 (716)
T KOG4593|consen 237 EELEAINKNMKDQLQELEELERALSQLREELAT 269 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888888888887777777663
No 150
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.42 E-value=5.2 Score=50.77 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 788 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~ 788 (1102)
-+..++.||...+--+.++.++...|-++| ++. ......+..+...|.--.+.+++++..|..+.+
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~l------e~~--------~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~ 511 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQL------EEL--------QRAAGRAETKTESQAKALESLRQELALLLIELE 511 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666 110 112223334455555555666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001316 789 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 830 (1102)
Q Consensus 789 ~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~ 830 (1102)
+|...+..+..+ -+.-..+|.++..+-+++.++..
T Consensus 512 ~lq~~~~~~~qs-------~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 512 ELQRTLSNLAQS-------HNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHhhhHHHH-------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 666554444442 22233444444444444444433
No 151
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.42 E-value=0.0041 Score=79.14 Aligned_cols=89 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----c-ccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 649 QNLEREIQEKRRQMRILEQRIIENGE----A-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 649 qkL~~el~dk~eei~~l~qki~~s~~----~-s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
.-|.++++.+++++..+++++...+. . +... -.....+++.+|+..+++.......-..++..+++.+.+.+.+
T Consensus 328 ~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~-qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e 406 (713)
T PF05622_consen 328 EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKS-QLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE 406 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777766666622211 1 1111 1113445555565555554444444455788888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQQL 738 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql 738 (1102)
...|..+.+.|+..+
T Consensus 407 ke~l~~e~~~L~e~~ 421 (713)
T PF05622_consen 407 KERLQEERDSLRETN 421 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887654
No 152
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.35 E-value=3.4 Score=46.62 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHH
Q 001316 614 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLM 693 (1102)
Q Consensus 614 eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~ 693 (1102)
.|+..|..|-+--++.| +++|.-+++|+.+|.--.--+++..+-..++..+-.. ...-.+.+-.+.-
T Consensus 63 ~QLn~L~aENt~L~SkL-----------e~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrd--lelafqr~rdEw~ 129 (305)
T PF14915_consen 63 GQLNVLKAENTMLNSKL-----------EKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRD--LELAFQRARDEWV 129 (305)
T ss_pred hhHHHHHHHHHHHhHHH-----------HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH--HHHHHHHHhhHHH
Confidence 36777888888877887 3455667777777665554444444433222111000 0011112222222
Q ss_pred HHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHH
Q 001316 694 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETEN 773 (1102)
Q Consensus 694 ~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~ 773 (1102)
.=-++.+++...-...+..|-++|..+++....|+-++...+..|. +..=.+.-+.
T Consensus 130 ~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr--------------EKtL~lE~~Q---------- 185 (305)
T PF14915_consen 130 RLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR--------------EKTLALESVQ---------- 185 (305)
T ss_pred HHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH----------
Confidence 2222333343333456899999999999999999999999988771 1111122222
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 847 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we 847 (1102)
.+|.|.++.+.|-..+...+..++.. ...---.+++.+..|..+|.-|.++|..|......-+
T Consensus 186 rdL~Qtq~q~KE~e~m~qne~~kv~k-----------~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 186 RDLSQTQCQIKEIEHMYQNEQDKVNK-----------YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777666 3344456778899999999999999998887654433
No 153
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.32 E-value=1.9 Score=46.36 Aligned_cols=136 Identities=22% Similarity=0.210 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhh
Q 001316 688 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ 767 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~ 767 (1102)
+|+=|+.||-+.-.++..|..++-.|+-+|.+..+........+..|+..+. .....+......++
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~--------------~K~~ELE~ce~ELq 76 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLR--------------TKQLELEVCENELQ 76 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HhhHhHHHhHHHHH
Confidence 3455555555555555555555555555555555555555555555554330 01111111122223
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 768 SQETENEKLKLEHVQLSEENSGLHVQNQKLA---------EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 768 ~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~---------~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.+..|++-++.+...|..+...|...+..+. .++-.|+..-.+....+..|..+|++|.++.....+...
T Consensus 77 r~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 77 RKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Confidence 3334445555555555555555555554431 011112222222345567777788888777776666544
No 154
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.22 E-value=0.015 Score=72.67 Aligned_cols=91 Identities=27% Similarity=0.555 Sum_probs=59.5
Q ss_pred CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC
Q 001316 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP 216 (1102)
Q Consensus 137 ~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~ 216 (1102)
.....|.|+.+......+..-+. -+.+.+..++++++.. +|++|+|.+.....|++-+.+..++......+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (670)
T KOG0239|consen 23 NPKKRFELARVYSPSVGQPSLFS-DVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDK 93 (670)
T ss_pred ccccccCccccccccccccccCC-ccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCC
Confidence 34456777777655433332222 2233445566666654 89999999999888988888887776543333
Q ss_pred CceeEEEeehhhhhcceeeecCCCCC
Q 001316 217 GREFLLRVSYLEIYNEVINDLLDPTG 242 (1102)
Q Consensus 217 ~~~~~v~vS~lEIYnE~i~DLL~~~~ 242 (1102)
+.. .++.|++.+.|++....
T Consensus 94 ~~~------~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 94 TSN------VVEAYNERLRDLLSELQ 113 (670)
T ss_pred Cch------hHHHHHHHHhhhccccc
Confidence 222 78899999999997543
No 155
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.22 E-value=2.9 Score=49.48 Aligned_cols=178 Identities=22% Similarity=0.248 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHh
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 789 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~ 789 (1102)
++.=|-++++..+.+.-|+.+|..|+.+. .++..--+.|.+|+ .-|++|--++-...-||.-
T Consensus 326 n~kQq~~IqdLq~sN~yLe~kvkeLQ~k~-----------~kQqvfvDiinkLk-------~niEeLIedKY~viLEKnd 387 (527)
T PF15066_consen 326 NRKQQNRIQDLQCSNLYLEKKVKELQMKI-----------TKQQVFVDIINKLK-------ENIEELIEDKYRVILEKND 387 (527)
T ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHh-----------hhhhHHHHHHHHHH-------HHHHHHHHhHhHhhhhhhh
Confidence 44445556677888888888888888766 12211112233332 1234444444444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhhhhhhcccccccchhhh
Q 001316 790 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA----ARESMHSRGAAMQTVNGVNRKYSDGMK 865 (1102)
Q Consensus 790 L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a----~k~~~~~we~qiqwv~d~~r~~~q~l~ 865 (1102)
++.-++.|.+.....+..-...-.|-..|.=++.|+.+.-.+|...+.+ +-.++++|.. ....-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclE------------mdk~L 455 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLE------------MDKTL 455 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHH------------HHHHh
Confidence 7777888988888888877777788888888999999988888876543 4445554432 11123
Q ss_pred hhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 866 AGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEA 938 (1102)
Q Consensus 866 ~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~lee~k~~~~~ 938 (1102)
.+..+++++|.. +|-++. +-.-+||+-.-++|+.++-|+..--+|+.++..+
T Consensus 456 skKeeeverLQ~-------------------lkgelE--kat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 456 SKKEEEVERLQQ-------------------LKGELE--KATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred hhhHHHHHHHHH-------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555655442 111221 2233456666667777666666555555444443
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.19 E-value=2.4 Score=50.63 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQ 737 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~q 737 (1102)
...||+.|...+.+|..|+.++..|+..
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTE 188 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999999853
No 157
>PRK11281 hypothetical protein; Provisional
Probab=95.19 E-value=3.2 Score=55.28 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001316 813 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 855 (1102)
Q Consensus 813 ~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d 855 (1102)
.+|..+.+++..+..++.+.++.+...+.+...-..|++|+..
T Consensus 292 ~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 292 QRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3555556688888888888888888888777777788888765
No 158
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.18 E-value=8.3 Score=48.25 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-.++.+|+.....+..+...+..+++.++++..+...++..-.+....|...+
T Consensus 425 ~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~ 477 (594)
T PF05667_consen 425 IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKEL 477 (594)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566777777777777777777777776666666
No 159
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.13 E-value=8 Score=44.27 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHH-------HhhHhHHHHHHHHHhh
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE-------IKSADNRILQEQLQNK 720 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~-------~k~a~~~~lqeqL~~~ 720 (1102)
+..|+.+++.++.+|..+..+...... ....-...++..+..+|+....+-. --..+...++.++...
T Consensus 20 Vr~LE~~N~~Le~~i~~~~~~~~~~~~-----~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 20 VRFLEQENKRLESEIEELREKKGEEVS-----RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHH---------H-----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHhcccccCc-----ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344556666666666655555311110 0111234455555555554433322 2234666677777777
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 001316 721 CSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 721 e~ei~~L~~ev~~Lk~ql 738 (1102)
...+..|+.++..|+..+
T Consensus 95 ~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 777777777777777666
No 160
>PRK09039 hypothetical protein; Validated
Probab=95.12 E-value=0.77 Score=53.57 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhhhh
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEAS-MANASMVDM 685 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s-~~~~~~~e~ 685 (1102)
+++.-+.+++..|..+++.....|. + .+.....|..+|.+.+.+++.++.........- .......++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~-l----------e~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~ 114 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLS-L----------ERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAA 114 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-H----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchH
Confidence 5555556666666666665333331 0 122233344444444444444444332211100 000112356
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.....+..+|.+....+.....++..|++|+.+...++..|+..|+.++.+.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777776666777777777666666666666666666544
No 161
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.12 E-value=2.5 Score=52.18 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ 718 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~ 718 (1102)
+.+++-..++-.+-++-|++++++.+.+-+.+-..... ..+|+.+|.+++.++...-.-++.+|++|.
T Consensus 55 q~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~------ndklE~~Lankda~lrq~eekn~slqerLe 122 (916)
T KOG0249|consen 55 QRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDL------NDKLENELANKDADLRQNEEKNRSLQERLE 122 (916)
T ss_pred hhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccc------hHHHHHHHhCcchhhchhHHhhhhhhHHHH
Confidence 45555667777777888999999997775544332222 567788888777766654444445554443
No 162
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.08 E-value=3.7 Score=41.35 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
+++......+.++..........+...|..-.-+.+.++-.|..+.+++..+..+...|..+...++..+.
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666666666666666778888888999999999999999888887776643
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.90 E-value=9.1 Score=43.75 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 708 ADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 708 a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
..+..+.++|.++...+..|+++|..-.
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kd 124 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKD 124 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888889999999885433
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.79 E-value=8.1 Score=51.53 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001316 814 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 855 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d 855 (1102)
+|....++++.+..++.+.+..+...+.+...-..|++|+..
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555556688888889999888888888888888889999864
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.74 E-value=12 Score=44.47 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 896 DLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 896 ~~k~el~~~~e~q~aLeael~~k~~~eeEl~~~lee~k~~~~~Le~eL 943 (1102)
.+.+.+.++......|++++.+.++..+||...-..+++.++.++.+.
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~a 247 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456667777777778888888888888888888888888888887666
No 166
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.69 E-value=0.022 Score=51.32 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=27.2
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001316 1055 MCKVCFESP-------------TAAILLPCRHFCLCKSCSLA----CSECPICR 1091 (1102)
Q Consensus 1055 ~C~IC~~~~-------------~~~vl~pCgH~~~C~~C~~~----~~~CPiCR 1091 (1102)
.|.||++.. ..+++++|||. |...|... ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499999865 55677899999 99999542 35799998
No 167
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.015 Score=65.85 Aligned_cols=43 Identities=30% Similarity=0.772 Sum_probs=31.1
Q ss_pred ccccccccccccc-------------cceEEeCCCCcccchhhh----hcCCCCCCCcccc
Q 001316 1051 PNSHMCKVCFESP-------------TAAILLPCRHFCLCKSCS----LACSECPICRTKI 1094 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~-------------~~~vl~pCgH~~~C~~C~----~~~~~CPiCR~~i 1094 (1102)
.++..|.||+++- +-.-=+||||. +=-.|- .+.+.|||||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 3566899999861 11234799997 777883 3457899999984
No 168
>PRK11281 hypothetical protein; Provisional
Probab=94.61 E-value=24 Score=47.34 Aligned_cols=92 Identities=10% Similarity=0.174 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHh
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGE-------ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 719 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~-------~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~ 719 (1102)
+.+.|...+.+..+++..+.+++...-. ......+..++.+.+.++..+|++..-+|..-......++.+...
T Consensus 81 ~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PER 160 (1113)
T PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER 160 (1113)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Confidence 3344555555555555555555522111 122333344566666666666666666665555666666666677
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001316 720 KCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 720 ~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.+++.+-+..++..+.++
T Consensus 161 AQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 161 AQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666
No 169
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.59 E-value=20 Score=46.84 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHH
Q 001316 650 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 729 (1102)
Q Consensus 650 kL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ 729 (1102)
+|..+...++.++...+.-..+....... ...+-..+++..++..++.++-++++..-+...+...+..-+-.|...++
T Consensus 205 ~lkde~~~~q~e~~L~qLfhvE~~i~k~~-~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~ 283 (1141)
T KOG0018|consen 205 RLKDEKGKAQKEQFLWELFHVEACIEKAN-DELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEE 283 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhh-HHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333332221 11223455677777778887777777776676677777777777777777
Q ss_pred HHHHHHHHHhhhccCCcCCCC---CCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 001316 730 KVNLLEQQLACQNGDKSAGSS---GQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 798 (1102)
Q Consensus 730 ev~~Lk~ql~~~~~~~~~~~~---~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~ 798 (1102)
.|.. +..+ +..+..... +....+..+...+..+..+..+|++++.+...+.--+..++.+.+...
T Consensus 284 ~l~e-rp~l---i~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 284 KLAE-RPEL---IKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred HHhh-hhHH---hhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 3333 221111111 112233344455556666666777776666666666666665555443
No 170
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.54 E-value=16 Score=45.04 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 001316 918 KEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLK 954 (1102)
Q Consensus 918 k~~~eeEl~~~lee~k~~~~~Le~eL~~m~vlv~kL~ 954 (1102)
.....+|+.+....+.-++.+-+.|+..+|..+...-
T Consensus 346 l~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 346 LYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555666666666666665543
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.41 E-value=8.7 Score=41.34 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGE--ASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~--~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
.++..|..++.+...|+.+|.+--..... .-|.. ...++.+-|..-..++.-.--.|+-....++.+...+.+++.+
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~-~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~e 97 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYED-TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443322111 11111 1225555555444444433334444455666666666777777
Q ss_pred HHHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQ 736 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ 736 (1102)
+..++.++..|+.
T Consensus 98 l~k~~~~l~~L~~ 110 (194)
T PF15619_consen 98 LLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776664
No 172
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.27 E-value=5.2 Score=40.93 Aligned_cols=66 Identities=20% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
.+.|.++...|.++.......+.-..+....+...|....-..+.|..+...+......++.+|..
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346666666677766666666666666555555555555554555555555554444444444443
No 173
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.27 E-value=13 Score=42.84 Aligned_cols=74 Identities=22% Similarity=0.177 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA--------------AAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsa--------------a~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
+|+++.+...|..+.+.+..|.+.+..|-.+.+..|.. ..+++.+|-.|-.-|..+...++.|..-
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555 4445555555555555555555555555
Q ss_pred HHHhhhhh
Q 001316 839 ARESMHSR 846 (1102)
Q Consensus 839 ~k~~~~~w 846 (1102)
++..++-+
T Consensus 215 ~k~~i~KY 222 (319)
T PF09789_consen 215 LKQTINKY 222 (319)
T ss_pred HHHHHHHH
Confidence 55554433
No 174
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.24 E-value=0.013 Score=74.71 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 001316 768 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK 805 (1102)
Q Consensus 768 ~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak 805 (1102)
....+++.||+++..|.+.|..|...+-.|.++...+.
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445777778888888877776666666666555543
No 175
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.20 E-value=2 Score=51.29 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=84.6
Q ss_pred cccccCCCCCCCCCCchhhhHHHHHHHHHHHHHhhchHHHHHHH----------hhhcCC-----C--------CCchHH
Q 001316 591 GELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLV----------DQSVND-----P--------DGSKVQ 647 (1102)
Q Consensus 591 ~~~~~~~~~~~~~~~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~----------e~a~~~-----~--------~~~k~Q 647 (1102)
++.+|+..+........+.+.|-||+..--+.|.+..-+|-+.. ++..+. | .-++.+
T Consensus 81 aAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~ 160 (596)
T KOG4360|consen 81 AAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQREL 160 (596)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHH
Confidence 45567777766666667777777777777777766654444322 222110 1 112356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRI--IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki--~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
.+.|...+++.++++..|.+|. +..+...+.. --++.+..+..+|. .-++.++.+++.|+.|..++.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~----keq~~y~~~~Kelr-------dtN~q~~s~~eel~~kt~el~ 229 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEE----KEQQLYGDCVKELR-------DTNTQARSGQEELQSKTKELS 229 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998 4444444432 12344544444443 335566667777777766666
Q ss_pred HHHHHHHHHHHHH
Q 001316 726 KLQEKVNLLEQQL 738 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql 738 (1102)
-+++++-.|--+|
T Consensus 230 ~q~Ee~skLlsql 242 (596)
T KOG4360|consen 230 RQQEENSKLLSQL 242 (596)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666555
No 176
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=94.20 E-value=1.3 Score=49.57 Aligned_cols=131 Identities=23% Similarity=0.247 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 763 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~ 763 (1102)
|+|..-.+|+.|++ +=..+|++|..--.++..|++-|-+.|..|++-+ +.. ....
T Consensus 4 d~QN~N~EL~kQiE-------IcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai---Lag-----------Gaaa---- 58 (351)
T PF07058_consen 4 DVQNQNQELMKQIE-------ICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI---LAG-----------GAAA---- 58 (351)
T ss_pred hhhhhcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-----------chHH----
Confidence 34444444544443 4456888888888999999999999999999866 211 1111
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHH
Q 001316 764 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELK----------NLAGEVTKLSLQNAKLE 833 (1102)
Q Consensus 764 ~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk----------~l~eev~kL~~e~~~l~ 833 (1102)
.-+.+|.++...|.||+.-|+-|+....- +|-..|...|-||| -+-|+-.-|+.+.++|.
T Consensus 59 -------NavrdYqrq~~elneEkrtLeRELARaKV---~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~Lr 128 (351)
T PF07058_consen 59 -------NAVRDYQRQVQELNEEKRTLERELARAKV---SANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLR 128 (351)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHH
Confidence 12579999999999999999999877655 56666666555555 47888899999999999
Q ss_pred HHHHHHHHhhhhhhhhh
Q 001316 834 KELLAARESMHSRGAAM 850 (1102)
Q Consensus 834 ~el~a~k~~~~~we~qi 850 (1102)
++|+.+..++ .-++|+
T Consensus 129 DKLAiaERtA-kaEaQL 144 (351)
T PF07058_consen 129 DKLAIAERTA-KAEAQL 144 (351)
T ss_pred HHHHHHHHHH-HHHHHH
Confidence 9998776553 456655
No 177
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.16 E-value=6.4 Score=43.56 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccchhhhhhhccccccccccccCCcccccccCCCCchhHHHH
Q 001316 821 EVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLE 900 (1102)
Q Consensus 821 ev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~e 900 (1102)
+++.|..+++.|...+.--|+..++.+...+- .-.+ +.-..+-.-+|+--+..+..
T Consensus 105 d~eaL~dq~adLhgD~elfReTeAq~ese~~a-----------------~ase-------Naarneeelqwrrdeanfic 160 (389)
T KOG4687|consen 105 DREALLDQKADLHGDCELFRETEAQFESEKMA-----------------GASE-------NAARNEEELQWRRDEANFIC 160 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhc-----------------cccc-------ccccchHHHHhhHHHHHHHH
Confidence 55555556666666655556666666543221 1110 11122333457766666666
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 901 LQARKQRE-AALEAALAEKEFLEDEYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 901 l~~~~e~q-~aLeael~~k~~~eeEl~~~lee~k~~~~~Le~eL 943 (1102)
..+.+... ..|...+++.--..+||--..++.+.+.+.|.+||
T Consensus 161 ~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhEL 204 (389)
T KOG4687|consen 161 AHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHEL 204 (389)
T ss_pred HHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHH
Confidence 66555443 34777888888888999999999999999999998
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.09 E-value=13 Score=42.19 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=10.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~ 837 (1102)
...+.++...+..+...++..+.
T Consensus 223 ~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 223 IDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 179
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.08 E-value=15 Score=42.77 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=62.5
Q ss_pred CCchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 001316 604 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 683 (1102)
Q Consensus 604 ~~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~ 683 (1102)
..+-|+|.++-|+.-++.|+.....++... .+.-++...|+..-.++-...+++...+.. ...
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~-----------e~er~~~~~El~~~r~e~~~v~~~~~~a~~------n~~ 133 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAA-----------ETEREAARSELQKARQEREAVRQELAAARQ------NLA 133 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 344567778888888887776654443111 111223334444444443333333333222 122
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-++|.+.++..|-...-.+|..-++.-+.+..|++..-++..+||.-+..|+-+.
T Consensus 134 kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~ 188 (499)
T COG4372 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQV 188 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665554444444455666666777776667777775555555433
No 180
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.06 E-value=4.3 Score=43.69 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=52.1
Q ss_pred chhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 001316 606 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 685 (1102)
Q Consensus 606 ~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~ 685 (1102)
+-+|-||+-|+|+.-.|++....++- ..|.|+..+..+++.++.++..|....
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv-----------~Lr~ql~e~~~~l~~~~~~~~~l~~~~---------------- 61 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIV-----------SLRAQLRELRAELRNKESQIQELQDSL---------------- 61 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHH----------------
Confidence 34678888888888888888766552 123444444444444444443332211
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 734 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~L 734 (1102)
..-..+|+...-+|.-+..+...+++.+...+.++..|+..+..+
T Consensus 62 ----~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 62 ----RTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred ----HHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 001112222222222233345567777777777777777777665
No 181
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.02 E-value=4 Score=44.65 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
.+++.++...-.|-+..|++|+..-.. |.++|.+|.-+-+-|.+||..
T Consensus 135 leDfeqrLnqAIErnAfLESELdEke~------------------llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 135 LEDFEQRLNQAIERNAFLESELDEKEV------------------LLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999999999876544 666899999898888888773
No 182
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.00 E-value=21 Score=44.27 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHhhc
Q 001316 607 DQMDLLVEQVKMLAGEIAFS 626 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~ 626 (1102)
-+.|-||-|.|-|+.|+|-.
T Consensus 423 kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAAA 442 (961)
T ss_pred HhHHHHHHHHHHHHHHHHHh
Confidence 34688888888777776654
No 183
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.99 E-value=7.2 Score=43.16 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+++..+..++.+++...=.+.....+...++.|....+.+|.++++.+.+.+.++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777776666666666777888888888888888888888888777
No 184
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.95 E-value=20 Score=44.96 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQ 667 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~q 667 (1102)
+++.|..+|.+...++..+..
T Consensus 329 el~~l~~~l~~l~~~i~~~~~ 349 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEA 349 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444
No 185
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.02 Score=70.60 Aligned_cols=41 Identities=34% Similarity=0.838 Sum_probs=34.0
Q ss_pred ccccccccccccc-----eEEeCCCCcccchhhhh----cCCCCCCCcccc
Q 001316 1053 SHMCKVCFESPTA-----AILLPCRHFCLCKSCSL----ACSECPICRTKI 1094 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~-----~vl~pCgH~~~C~~C~~----~~~~CPiCR~~i 1094 (1102)
...|.||.+.-.. .-.+||+|. ||..|-. +...||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 3479999998888 789999999 9999943 347799999943
No 186
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=93.82 E-value=0.046 Score=60.74 Aligned_cols=53 Identities=13% Similarity=-0.113 Sum_probs=45.8
Q ss_pred CCCccccccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcccccceeec
Q 001316 1048 NGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTKISDRLFA 1100 (1102)
Q Consensus 1048 ~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCR~~i~~~i~i 1100 (1102)
+.+-...+|.+|..+-..+++.||+|..+|..|+... ..||+|...+...++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 5556778999999999999999999999999997653 7799999888777776
No 187
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.78 E-value=24 Score=44.04 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHH
Q 001316 610 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKR 659 (1102)
Q Consensus 610 d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~ 659 (1102)
+-+.+|+++|.-|+...++.|....+.... -..|++-|...+..+.
T Consensus 373 ~~~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 373 KKNEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQ 418 (786)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Confidence 445567777777777776666544443322 2234444444444444
No 188
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.75 E-value=7.2 Score=39.25 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+..++++++....++..|+.+++..+..|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888888887777655
No 189
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.71 E-value=6.4 Score=44.85 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=50.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 785 EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 785 ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
-|.++|..++++|..+...+.++-..+-.+...|++-+.++..+|++++-+|.+.+..
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667788888888888888888888888999999999999999999999998876654
No 190
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.026 Score=66.35 Aligned_cols=45 Identities=29% Similarity=0.793 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
.++..|.||+...-..|..||||- +|..|..++ ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456689999999999999999999 999995443 669999998765
No 191
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.04 Score=60.52 Aligned_cols=43 Identities=30% Similarity=0.741 Sum_probs=33.6
Q ss_pred cccccccccccccceEE-eCCCCcccchhhhhcC------CCCCCCccccc
Q 001316 1052 NSHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC------SECPICRTKIS 1095 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~~------~~CPiCR~~i~ 1095 (1102)
.+..|++|.+.++...+ +||||. +|..|.... -.||.|..++.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 55699999998876655 569998 999995432 25999998765
No 192
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.62 E-value=9.7 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=11.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLL 734 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~L 734 (1102)
+...++.++.....+...++.++.+.
T Consensus 159 ~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 159 ELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 193
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=93.61 E-value=0.038 Score=49.72 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
....|.||.+-.++-|+.||||. ||..|... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 34579999999999999999988 99999543 3569999998875
No 194
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.51 E-value=38 Score=45.53 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRII 670 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~ 670 (1102)
..++++..+.+--.+++.+.+++.
T Consensus 66 ~~~~~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 66 RAKQYQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344566666666666666666654
No 195
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=21 Score=45.23 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=10.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 714 QEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 714 qeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-+.|+++..++..|..+...|..+|
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
No 196
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.31 E-value=14 Score=43.55 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=29.8
Q ss_pred HhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 705 IKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 705 ~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+++.+++.||-.++..+.++.+|+..+.+|+-..
T Consensus 294 easle~Enlqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 294 EASLEKENLQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466888999999999999999999999999655
No 197
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.30 E-value=6.2 Score=49.27 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH----HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHV----QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL 832 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~----~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l 832 (1102)
+.+.++..++ ..+..+++++. .+.+....+..+++.+.. ...++..|.++++++..+..++
T Consensus 301 ~~L~ele~RL----~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~-----------~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 301 ERLNEIEERL----AQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD-----------SDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554333 33455555443 444444444444444433 2335666666666666666666
Q ss_pred HHHHHHHHHhh
Q 001316 833 EKELLAARESM 843 (1102)
Q Consensus 833 ~~el~a~k~~~ 843 (1102)
..+|..+|..+
T Consensus 366 a~~Ls~~R~~~ 376 (563)
T TIGR00634 366 AVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 198
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.30 E-value=0.037 Score=60.32 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=30.9
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+||.-+. +..++..|. .+..+.+.--..|| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 3599998664 345666665 44444444222244 47889999999999764
No 199
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.25 E-value=14 Score=39.79 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
+..|+.+|.+...++.+|..|...|++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555553
No 200
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.24 E-value=29 Score=43.43 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.|..|.+....|+|..+.|++...=++.-.+++.+.+.+.+.-+.||+.|+-||
T Consensus 346 ~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQL 399 (1480)
T COG3096 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQL 399 (1480)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999987655555555666666666666666777777666
No 201
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.24 E-value=1 Score=48.23 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
++.......|.+|...|..++..+.+ ++.+|..+|..|-+-+...|
T Consensus 140 ~ek~k~~e~l~DE~~~L~l~~~~~e~---------------------k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 140 KEKNKANEILQDELQALQLQLNMLEE---------------------KLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666655 77888888877776654444
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.16 E-value=24 Score=42.15 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhcc--ccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRI--IENGEA--SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki--~~s~~~--s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
+++|+.++..|++||..|..++ ++...+ .-....-.+|.++-.+|..+|++...+-.. =.+.+.++=-+++..
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~---L~k~V~~~~leaq~~ 408 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDK---LTKSVKSRKLEAQGI 408 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHH---HHHHHHhHHHHHHHH
Confidence 6678888888888888888777 111111 111112235667777788888876554432 122333444455666
Q ss_pred HHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLE 735 (1102)
Q Consensus 724 i~~L~~ev~~Lk 735 (1102)
+.+|+..+..+.
T Consensus 409 ~~slek~~~~~~ 420 (622)
T COG5185 409 FKSLEKTLRQYD 420 (622)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 203
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.015 Score=65.81 Aligned_cols=42 Identities=29% Similarity=0.808 Sum_probs=32.9
Q ss_pred ccccccccccceEE-eCCCCcccchhhhhc-----CCCCCCCcccccce
Q 001316 1055 MCKVCFESPTAAIL-LPCRHFCLCKSCSLA-----CSECPICRTKISDR 1097 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~~ 1097 (1102)
.|.||++--+.+|. .-|.|. ||..|... -..||.||+...+.
T Consensus 45 ~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 45 ICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred ccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 89999996655544 579999 99999543 25699999987764
No 204
>PRK01156 chromosome segregation protein; Provisional
Probab=92.84 E-value=43 Score=44.26 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999998765
No 205
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.80 E-value=0.068 Score=59.85 Aligned_cols=45 Identities=18% Similarity=0.453 Sum_probs=36.6
Q ss_pred ccccccccccccc----cceEEeCCCCcccchhhhhcCC---CCCCCcccccc
Q 001316 1051 PNSHMCKVCFESP----TAAILLPCRHFCLCKSCSLACS---ECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~----~~~vl~pCgH~~~C~~C~~~~~---~CPiCR~~i~~ 1096 (1102)
.....|+|+.... .-++|.||||+ ||..|...+. .||+|..+|..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence 4556899998644 57888899998 9999977665 69999999875
No 206
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.78 E-value=22 Score=42.77 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGS-----KVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~-----k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.+-|.+|++.+..++...-..|+.+.++..-...++ ..++..|+.++...+.+...+..|.
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKE 238 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888887775543222 2344555555555555554444444
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.68 E-value=4.1 Score=40.43 Aligned_cols=22 Identities=9% Similarity=0.410 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki 669 (1102)
+++|+.+|+.++-|+..+...+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444
No 208
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.39 E-value=53 Score=44.26 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=38.9
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhh
Q 001316 782 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR-ESMHSRGAAM 850 (1102)
Q Consensus 782 ~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k-~~~~~we~qi 850 (1102)
.|.++...|..+...+..+..+....+.-..+++-.+.++-.+++++..+ ..+++... ..+.+|.+.+
T Consensus 882 qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~aqk~~~~ine~~s~l 950 (1294)
T KOG0962|consen 882 QLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKLAQKKRNDINEKVSLL 950 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555666666777777777788777655 33333333 5667777766
No 209
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.35 E-value=0.038 Score=71.58 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.+-|+.++..+.+++-..-....||.-+- ..-+..+.++|.+|+++++.+.+..
T Consensus 470 ~~El~~~leE~E~~l~~~E~~~lRl~~el-------~~~r~e~er~l~eKeeE~E~~Rr~~ 523 (859)
T PF01576_consen 470 KEELQEQLEEAEDALEAEEQKKLRLQVEL-------QQLRQEIERELQEKEEEFEETRRNH 523 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 45566666666666655444444433322 3334566777888888887776555
No 210
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.17 E-value=0.14 Score=61.25 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=57.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCC---CCCCCchh----hHHHHHHHHhh
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQ 213 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~---~~~~GIip----r~~~~LF~~i~ 213 (1102)
.|....-|.|.-+|-.- ...||+.+-.|...-+ -.|.|||||||||-.- -.-|-||- -...+||+...
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46667778888888653 4457777766665544 4699999999999641 11222221 23455666554
Q ss_pred c-CCCceeEEEeehhhhhccee
Q 001316 214 D-TPGREFLLRVSYLEIYNEVI 234 (1102)
Q Consensus 214 ~-~~~~~~~v~vS~lEIYnE~i 234 (1102)
+ -|+..+.-.|||+..|.-..
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 4 36667777899999886543
No 211
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.073 Score=61.23 Aligned_cols=42 Identities=29% Similarity=0.781 Sum_probs=31.4
Q ss_pred cccccccccc---cceEEeCCCCcccchhhhhc----CCC-CCCCcccccc
Q 001316 1054 HMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSE-CPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~-CPiCR~~i~~ 1096 (1102)
..|.||++.. -.+.++||.|- |=..|... .+. ||+|++.|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 3899999954 34677999999 77778432 233 9999998765
No 212
>PRK06893 DNA replication initiation factor; Validated
Probab=91.87 E-value=0.15 Score=55.86 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=33.1
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...++||..++.. +..-+ ..+...+-.++|..++-||++|+||||.+.
T Consensus 10 ~~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4568999988644 32222 222333345788889999999999999886
No 213
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.81 E-value=32 Score=40.47 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAA---AVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa---~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
|.+=...|=++..+|+.|++-|...++.=...-+-..++|..- ..+-.++.--+++|.++..||...|.+|..+
T Consensus 199 qEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666667777777777766655444344455555221 1122233446788888899998888877766
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.76 E-value=13 Score=42.54 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHH------Hh-hHhHHHHHHHHHhhhHH
Q 001316 651 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE------IK-SADNRILQEQLQNKCSE 723 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~------~k-~a~~~~lqeqL~~~e~e 723 (1102)
|+..||...|.-+.|.+ |-.+.. |.|++..+|+.+-++.--+|- .+ ..+..+|...+...+.|
T Consensus 73 lq~kirk~~e~~eglr~-i~es~~---------e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRK-IRESVE---------ERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHHhccHHHHH-HHHHHH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45555555555544433 322222 556666666655554433332 12 34777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY 803 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ 803 (1102)
+.-|+-.++.+.+.. .+.++..-+|+ .|..+-..-+..|.+|++.=-.+...+..
T Consensus 143 n~~lqlqL~~l~~e~--------------~Ekeeesq~Ln-------rELaE~layqq~L~~eyQatf~eq~~ml~---- 197 (401)
T PF06785_consen 143 NQCLQLQLDALQQEC--------------GEKEEESQTLN-------RELAEALAYQQELNDEYQATFVEQHSMLD---- 197 (401)
T ss_pred HHHHHHhHHHHHHHH--------------hHhHHHHHHHH-------HHHHHHHHHHHHHHHHhhcccccchhhhH----
Confidence 777777777777655 23334444444 12222233333444444332222222222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 804 AKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 804 ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
..-+-+.+|+.+|+.||.|.+-|-+-
T Consensus 198 ------kRQ~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 198 ------KRQAYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23334556777999999888777553
No 215
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.71 E-value=5.8 Score=49.22 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHH
Q 001316 653 REIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVN 732 (1102)
Q Consensus 653 ~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~ 732 (1102)
.-++-+++.++.++.++.++-++.--.-.+.++++-+.++..+=+ ......+.+...+.++.++-.|++
T Consensus 112 ekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee-----------~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 112 EKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEE-----------HSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred HhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888887776633322233344444444433221 223344555556666677777777
Q ss_pred HHHHHH
Q 001316 733 LLEQQL 738 (1102)
Q Consensus 733 ~Lk~ql 738 (1102)
++++.+
T Consensus 181 rarqre 186 (916)
T KOG0249|consen 181 RARQRE 186 (916)
T ss_pred HHHHHH
Confidence 777655
No 216
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.67 E-value=1.3 Score=55.12 Aligned_cols=50 Identities=34% Similarity=0.480 Sum_probs=34.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+||..+-. ..+..+|. .+..++...-.+||. ||-||.+|+||||-+.
T Consensus 283 ~~~TFDnFvvG-~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIG-ASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCC-CccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 45999876532 23445553 455555544456776 8999999999999986
No 217
>PRK06620 hypothetical protein; Validated
Probab=91.66 E-value=0.12 Score=56.24 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=33.7
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc---eeEEeeccCCCCCccccC
Q 001316 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN---GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N---~tIfaYGqTgSGKT~Tm~ 192 (1102)
....|+||..+. ..++...|..+.. +.+. -|+| -.++-||++|+||||.+.
T Consensus 9 ~~~~~tfd~Fvv-g~~N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 9 TSSKYHPDEFIV-SSSNDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCchhhEe-cccHHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345689998765 3445667763332 3321 1444 358999999999999986
No 218
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.61 E-value=0.053 Score=70.37 Aligned_cols=79 Identities=24% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVE-LKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~e-lk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
|++.|+..+..-.+.+..|..++.++..+..-.+.....-+++ ...|++--.+|..+..-+...+..++..+..|+...
T Consensus 272 e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k 351 (859)
T PF01576_consen 272 ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTK 351 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555554444 444555555666666666666666666666666544
No 219
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.052 Score=63.56 Aligned_cols=41 Identities=29% Similarity=0.858 Sum_probs=31.5
Q ss_pred cccccccc-----------------cccceEEeCCCCcccchhhhhc-CC----CCCCCccccc
Q 001316 1054 HMCKVCFE-----------------SPTAAILLPCRHFCLCKSCSLA-CS----ECPICRTKIS 1095 (1102)
Q Consensus 1054 ~~C~IC~~-----------------~~~~~vl~pCgH~~~C~~C~~~-~~----~CPiCR~~i~ 1095 (1102)
..|+|||. ..++.|+.||-|. |-..|-.. |. .||+||.++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 47999997 2346788899999 99999432 32 6999999875
No 220
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=41 Score=41.00 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=12.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|++|+.+.+++-...+.|++.+++-+
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555554444
No 221
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.34 E-value=13 Score=39.59 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=34.2
Q ss_pred HhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 695 QCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 695 ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..++-.-.|.+.-++.....+.+...++.|.+|..++..+..-+
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nl 125 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNL 125 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 34444455667778888889999999999999999988877665
No 222
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.32 E-value=23 Score=37.86 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHH
Q 001316 608 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQ 687 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~ 687 (1102)
.++.|.-.-+.|.||.+.....+..+.|. ..+|..+|.++..++.++.+=+ +... -+-.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~-----------na~L~~e~~~L~~q~~s~Qqal-~~aK---------~l~e 67 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEG-----------NAQLAEEITDLRKQLKSLQQAL-QKAK---------ALEE 67 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HHHH---------HHHH
Confidence 34555666666777766544444322222 2356667777777776664322 1111 0112
Q ss_pred HHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 688 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++.+|+.-+... -..++.|..|....+.++..|-.+|+.|+...
T Consensus 68 EledLk~~~~~l-------EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 68 ELEDLKTLAKSL-------EEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333222 23455566666666666666666666666655
No 223
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.18 E-value=26 Score=38.16 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 001316 817 NLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 817 ~l~eev~kL~~e~~~l~~e 835 (1102)
.+.+....+..+|.+|..+
T Consensus 153 ~l~e~~~~i~~EN~~L~k~ 171 (206)
T PF14988_consen 153 SLDEFTRSIKRENQQLRKE 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665
No 224
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.16 E-value=0.37 Score=58.02 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=27.4
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.....+..++..-+|.|+.-|+||||||.||+
T Consensus 245 ~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 245 FQLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 34445677888999999999999999999997
No 225
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.12 E-value=32 Score=44.55 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhh----
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK---- 720 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~---- 720 (1102)
..|++.+.+++.+.+.++...+++.- ..... ...-..+.+.++..+|.....++....+....++.++...
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~---l~~~~--~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~ 274 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSD---LLMGN--NATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLD 274 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC---CcccC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45566666666666666666655431 11111 1111235666666666665555554444555555555322
Q ss_pred ------------hHHHHHHHHHHHHHHHHH
Q 001316 721 ------------CSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 721 ------------e~ei~~L~~ev~~Lk~ql 738 (1102)
...|.+|+.++..++.++
T Consensus 275 ~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~ 304 (754)
T TIGR01005 275 VLPEVLSSQLKLEDLIQRLRERQAELRATI 304 (754)
T ss_pred chhhhhcCcccccHHHHHHHHHHHHHHHHH
Confidence 145666666666666655
No 226
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.12 E-value=0.052 Score=66.46 Aligned_cols=45 Identities=22% Similarity=0.645 Sum_probs=35.0
Q ss_pred cccccccccccceEE---eCCCCcccchhhhhc---C-CCCCCCcccccceee
Q 001316 1054 HMCKVCFESPTAAIL---LPCRHFCLCKSCSLA---C-SECPICRTKISDRLF 1099 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl---~pCgH~~~C~~C~~~---~-~~CPiCR~~i~~~i~ 1099 (1102)
.+|.+|+....+-++ .+|+|. ||..|... + ..||+||.-|..++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 479999876665554 499999 99999443 2 569999999988764
No 227
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.03 E-value=0.075 Score=66.71 Aligned_cols=41 Identities=27% Similarity=0.860 Sum_probs=34.5
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC------CCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~------~~CPiCR~~i~~ 1096 (1102)
..|.+|.+ ...+++++|+|. +|..|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 47999999 999999999999 999995432 469999987653
No 228
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.97 E-value=65 Score=42.41 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++....+..-++....++...+++.++.++.++.....+...-.+.+
T Consensus 225 vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~ 271 (1141)
T KOG0018|consen 225 VEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRREL 271 (1141)
T ss_pred hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666666666666666666665554333333
No 229
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.90 E-value=15 Score=47.62 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.-+.+++.+++..+...+.++..++.++.+
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k 269 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEK 269 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888777
No 230
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.89 E-value=27 Score=37.85 Aligned_cols=113 Identities=26% Similarity=0.332 Sum_probs=57.4
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
.++|+.|.+-|..+..++.+|+.++......- ..+..++.++.....++.+|+.++..|...
T Consensus 54 ~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK------------------~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 54 SQENKRLSEPLKKAEEEVEELRKQLKNYEKDK------------------QSLQNLKARLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776655332 122233334444444455555555555555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
+.++..|-+.|...+..+..=. -.+....|--|+.+|.+..+.+...++|+
T Consensus 116 ~~kle~ErdeL~~kf~~~i~ev-------------qQk~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 116 FEKLEQERDELYRKFESAIQEV-------------QQKTGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444322221111 12233344445555555555555555555
No 231
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.87 E-value=20 Score=41.38 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhhc----CC------CCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHh------
Q 001316 613 VEQVKMLAGEIAFSSSNLKRLVDQSV----ND------PDGSKVQI----QNLEREIQEKRRQMRILEQRIIEN------ 672 (1102)
Q Consensus 613 ~eq~k~l~~e~a~~~s~Lk~l~e~a~----~~------~~~~k~Q~----qkL~~el~dk~eei~~l~qki~~s------ 672 (1102)
|+|+|..+.-+...-..|++-+.+-. .. |.+.+..+ .....+++.+..++..|.||+..+
T Consensus 25 rDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~Kl 104 (319)
T PF09789_consen 25 RDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKL 104 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 67788777777777777777665444 11 22222222 234445555566666666665111
Q ss_pred --------hccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccC
Q 001316 673 --------GEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGD 744 (1102)
Q Consensus 673 --------~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~ 744 (1102)
.....+.... ...-+-..|-.||++.....+.-.-|...+-+..++...|....+.++++|-..|+.++..
T Consensus 105 LR~~la~~r~~~~~~~~~-~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g 183 (319)
T PF09789_consen 105 LREKLARQRVGDEGIGAR-HFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNG 183 (319)
T ss_pred HHHHHHhhhhhhcccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111110000 0011223344445444444444445666666777777777777888888888777666654
Q ss_pred Cc
Q 001316 745 KS 746 (1102)
Q Consensus 745 ~~ 746 (1102)
.+
T Consensus 184 ~~ 185 (319)
T PF09789_consen 184 DE 185 (319)
T ss_pred CC
Confidence 33
No 232
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.86 E-value=16 Score=41.07 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001316 765 KVQSQETENEKLKLEHVQLSEENSG-------LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 834 (1102)
Q Consensus 765 ~~~~q~~E~e~lk~~~~~L~ee~~~-------L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~ 834 (1102)
.+.+|..+-.+|+..+..|.+.++. |+..+..|...-..-+.+..+++.+...+.+++.-|..+.+..+.
T Consensus 149 ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a 225 (265)
T COG3883 149 ILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEA 225 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455666666666655555555544 344445555555556666666666666666666666644444433
No 233
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.86 E-value=14 Score=47.42 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSE 785 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~e 785 (1102)
+++.++++|......+..+..+++..+.+++ ..++..+....-.+.....|++-|.+|-.+|+++-++.+.+..
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~---~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQQRQIE---SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554442 1111112222345666677777777888888887776666544
No 234
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=90.82 E-value=53 Score=41.16 Aligned_cols=50 Identities=28% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHh
Q 001316 689 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN----KKLQEKVNLLEQQLA 739 (1102)
Q Consensus 689 i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei----~~L~~ev~~Lk~ql~ 739 (1102)
+.+|+..|.++.--|..+. ....+-+.|..++.++ ...+.+|.+|+.+|+
T Consensus 407 leeL~~~L~e~qkll~ekk-~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~ 460 (786)
T PF05483_consen 407 LEELKKILAEKQKLLDEKK-QFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLT 460 (786)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6667777777764444332 2444445555555444 445778888888883
No 235
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.80 E-value=8.3 Score=46.84 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=71.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001316 776 LKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 855 (1102)
Q Consensus 776 lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d 855 (1102)
|..+...|..+++......-.+..|...-......+.-+.+++.+++..+...+.+|++||..-|.. ++.||.-+++
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSE 494 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN---YEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 4667777888888888777777777777666777778899999999999999999999999988854 8899876665
Q ss_pred cccccchhhhhhhcccccccc
Q 001316 856 VNRKYSDGMKAGRKGRLSGRS 876 (1102)
Q Consensus 856 ~~r~~~q~l~~~~~ee~~~l~ 876 (1102)
--- .++.--.+.+|+|+.||
T Consensus 495 HLa-smNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLA-SMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHH-HHHHHHHHHHHHHHHHh
Confidence 100 01112345566776665
No 236
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.80 E-value=43 Score=40.10 Aligned_cols=180 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhh-hhHHHh
Q 001316 628 SNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKA-FELEIK 706 (1102)
Q Consensus 628 s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~-~el~~k 706 (1102)
..|++|.... .+++.+||-|..-+--++..+..|.-|+..... -.+ -|.+|+..+++.. -.|+|.
T Consensus 317 EvL~kLk~tn----~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqv-------fvD---iinkLk~niEeLIedKY~vi 382 (527)
T PF15066_consen 317 EVLQKLKHTN----RKQQNRIQDLQCSNLYLEKKVKELQMKITKQQV-------FVD---IINKLKENIEELIEDKYRVI 382 (527)
T ss_pred HHHHHHHhhh----HHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhH-------HHH---HHHHHHHHHHHHHHhHhHhh
Confidence 4555555444 235667787777777777777777666643211 001 2445555544432 122321
Q ss_pred -------------hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHH--hhhhhHH
Q 001316 707 -------------SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK--KVQSQET 771 (1102)
Q Consensus 707 -------------~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~--~~~~q~~ 771 (1102)
.......|..|++...+...||-++...+.-- ..-.+.|+.|+.+ +..+|-.
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny-------------v~LQEry~~eiQqKnksvsqcl 449 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANY-------------VHLQERYMTEIQQKNKSVSQCL 449 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH-------------HHHHHHHHHHHHHhhhHHHHHH
Confidence 22556677788888888888888776665422 1113456666643 3334444
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA----AAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsa----a~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
|+++-=-++ +++..+|...-..|..+...|-+|... -.-||-.|.++..|-..+|-.-.++|.
T Consensus 450 Emdk~LskK---eeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 450 EMDKTLSKK---EEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444332111 222222222222222222233333222 344566666677666666655555554
No 237
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.65 E-value=22 Score=36.44 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=21.6
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+.++.+.+....++.+|.+|+.++..|..++
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~el 51 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEEL 51 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777777777777666
No 238
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.65 E-value=19 Score=40.37 Aligned_cols=155 Identities=21% Similarity=0.286 Sum_probs=81.7
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 765 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 765 ~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
.+..+-.++.++..++..+..+.+.|..+.+.+... +..+.++++++..+..++..++...++.+.
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k--------------~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK--------------IDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777773 334444555555555555555544444444
Q ss_pred hhhhhh------hhhcccccccchhhhhhh-----ccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 001316 845 SRGAAM------QTVNGVNRKYSDGMKAGR-----KGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEA 913 (1102)
Q Consensus 845 ~we~qi------qwv~d~~r~~~q~l~~~~-----~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLea 913 (1102)
.+..-+ ..+|+.+-.|+..+.+-. -.++..+.. -.+..-+-...+|.|.....+.|..++.
T Consensus 98 ~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~--------iv~aDk~ile~qk~dk~~Le~kq~~l~~ 169 (265)
T COG3883 98 ERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISV--------IVDADKKILEQQKEDKKSLEEKQAALED 169 (265)
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 334554444555433211 111111000 0011111234567777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 914 ALAEKEFLEDEYRKKVEESKRREEALEN 941 (1102)
Q Consensus 914 el~~k~~~eeEl~~~lee~k~~~~~Le~ 941 (1102)
.+..-.....|+...+..+..+..++..
T Consensus 170 ~~e~l~al~~e~e~~~~~L~~qk~e~~~ 197 (265)
T COG3883 170 KLETLVALQNELETQLNSLNSQKAEKNA 197 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666555554444444433
No 239
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.52 E-value=29 Score=42.42 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHhHHHHHHHH
Q 001316 687 QTVTRLMSQCNEKAFELEIKSADNRILQEQL 717 (1102)
Q Consensus 687 ~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL 717 (1102)
..+..+..++.....++....+....++.++
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l 234 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQL 234 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445455555544444443344444444443
No 240
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.49 E-value=33 Score=44.43 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCC-Cc---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD-GS---KVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~-~~---k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.+-|.+|+..+..++......|+.+..+..-... .. ..|+..|+.++...+.+....+.+.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~ 260 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTA 260 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888887777777665443221 11 1355566666666555555555544
No 241
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.37 E-value=23 Score=42.19 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhH----hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhcc---CCcCCCC---CCCCC
Q 001316 686 QQTVTRLMSQCNEKAFELEIKSA----DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNG---DKSAGSS---GQGTS 755 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k~a----~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~---~~~~~~~---~~~~~ 755 (1102)
.+....|..|.+.-++-|...-. +-..|+.+|.....+|..++.++..|+.-+..... +..++-+ .-+..
T Consensus 232 ~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~v 311 (384)
T PF03148_consen 232 EQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNV 311 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCch
Confidence 45555567777766666665433 44466677788888888888888888876621111 0000000 00011
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 756 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 756 e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
|-.-+.-. ..|-.++..|.+-...|...+..... .+..|.....+|+.+
T Consensus 312 ElcrD~~q----------~~L~~Ev~~l~~~i~~L~~~L~~a~~---------------------~l~~L~~~~~~Le~d 360 (384)
T PF03148_consen 312 ELCRDPPQ----------YGLIEEVKELRESIEALQEKLDEAEA---------------------SLQKLERTRLRLEED 360 (384)
T ss_pred HHHHhhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 11111111 23344555555555555555555555 788888888899999
Q ss_pred HHHHHHhhh
Q 001316 836 LLAARESMH 844 (1102)
Q Consensus 836 l~a~k~~~~ 844 (1102)
+..+..++.
T Consensus 361 i~~K~~sL~ 369 (384)
T PF03148_consen 361 IAVKNNSLF 369 (384)
T ss_pred HHHHHHHHH
Confidence 888887754
No 242
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.97 E-value=4.8 Score=44.90 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
..+|++|++..+|++|..++..++..|.. +|++|.++|-+|-+++.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~---------------------Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRR---------------------EVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999 99999999999988855
No 243
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.14 Score=59.17 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=35.6
Q ss_pred ccccccccccccceE-----E---eCCCCcccchhhhhc-----------CCCCCCCcccccceee
Q 001316 1053 SHMCKVCFESPTAAI-----L---LPCRHFCLCKSCSLA-----------CSECPICRTKISDRLF 1099 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~v-----l---~pCgH~~~C~~C~~~-----------~~~CPiCR~~i~~~i~ 1099 (1102)
..+|.||++.-...+ | -+|-|. ||-.|... .+.||+||.+....++
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999877766 5 679999 99999432 2569999998776543
No 244
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.86 E-value=63 Score=40.49 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001316 911 LEAALAEKEFLEDEYRKKVEESKRREEALENDLANMW 947 (1102)
Q Consensus 911 Leael~~k~~~eeEl~~~lee~k~~~~~Le~eL~~m~ 947 (1102)
+...+.+...--+++.+.++.+..-+..|.....+|-
T Consensus 456 l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 456 LSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433333344555666777666666666654433
No 245
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.83 E-value=68 Score=40.87 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHH
Q 001316 615 QVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMS 694 (1102)
Q Consensus 615 q~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ 694 (1102)
+...+..++......+..+.++-...-.+...+.+.|+.+++..+.+.....+++.+......... =+...+.++..
T Consensus 231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~---l~~~ll~~~~~ 307 (650)
T TIGR03185 231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLL---LIPNLLDSTKA 307 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHh---hhHHHHHHHHH
Confidence 333333333333333333333322223344455667888888888888888888855544332211 12344555555
Q ss_pred Hhhh
Q 001316 695 QCNE 698 (1102)
Q Consensus 695 ql~e 698 (1102)
++..
T Consensus 308 q~~~ 311 (650)
T TIGR03185 308 QLQK 311 (650)
T ss_pred HHHH
Confidence 5554
No 246
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.82 E-value=45 Score=38.76 Aligned_cols=98 Identities=22% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQET 771 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~ 771 (1102)
|...++...-+++.-......+.+.+......-..|..++..|+... .. -....-+.+..++..|..+..
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~------~e----~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV------EE----IESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hh----hhhcCHHHHHHHHHHHHHHHH
Confidence 34444444445555567788888888889999999999999998755 11 011223566677777777777
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+++..+++...|..+...+..+.+.+..
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666666655
No 247
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=89.80 E-value=66 Score=40.61 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHhhchHHHHHHHhhh-cCCCCCchH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 001316 608 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQS-VNDPDGSKV-----QIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a-~~~~~~~k~-----Q~qkL~~el~dk~eei~~l~qki 669 (1102)
+.|.|++|+..-.+++.-....+..|..-- .-.|.+-+. ..+.|..-+.-++++-++|..-+
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ 265 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATA 265 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999988866666555443 223333232 24456666666666655544433
No 248
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.63 E-value=4.1 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.121 Sum_probs=10.1
Q ss_pred HHHhHHHHHhHHHHHHHHHH
Q 001316 780 HVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 780 ~~~L~ee~~~L~~e~~kl~~ 799 (1102)
...|.++|++|..+++.+..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555444
No 249
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.60 E-value=3.5 Score=44.77 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=26.0
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..++..|+++|.....++..|+.+++.+++..
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888765
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.59 E-value=0.2 Score=56.45 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.6
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-..|+|..+.+--+|.|+..|+||||||.||-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 45678888999999999999999999999984
No 251
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=89.57 E-value=48 Score=38.72 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccchhhhhhhcccccccccc--ccCCcccccccCC
Q 001316 814 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTE--ISGVVSDDFDSWN 891 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d~~r~~~q~l~~~~~ee~~~l~~~--~~~~~~~~~~~~w 891 (1102)
||.-|+|..-.--.+|+.|.+.+++-+.. ..|||.-|..--..+|.|-+.+.+||..||.- +++.|++.-.++-
T Consensus 429 ELeVLSEQYSQKCLEnahLaqalEaerqa----LRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqg 504 (593)
T KOG4807|consen 429 ELEVLSEQYSQKCLENAHLAQALEAERQA----LRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQG 504 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccC
Confidence 44444445554455667776666665544 34554444433456777888888888887754 2334444444444
Q ss_pred CC
Q 001316 892 LD 893 (1102)
Q Consensus 892 k~ 893 (1102)
|+
T Consensus 505 kd 506 (593)
T KOG4807|consen 505 KD 506 (593)
T ss_pred cc
Confidence 43
No 252
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.53 E-value=58 Score=39.60 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=14.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.++.++......+..++.++..++.++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 195 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALK 195 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555566655555544
No 253
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=89.31 E-value=0.22 Score=46.11 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=23.7
Q ss_pred ceEEeCCCCcccchhhhh-------cCCCCCCCccccc
Q 001316 1065 AAILLPCRHFCLCKSCSL-------ACSECPICRTKIS 1095 (1102)
Q Consensus 1065 ~~vl~pCgH~~~C~~C~~-------~~~~CPiCR~~i~ 1095 (1102)
.+|++.|+|. |-..|.. .-..||+||+++.
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5688999998 9999932 2367999999864
No 254
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.24 E-value=8.6 Score=42.19 Aligned_cols=39 Identities=33% Similarity=0.460 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 901 LQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 901 l~~~~e~q~aLeael~~k~~~eeEl~~~lee~k~~~~~Le~eL 943 (1102)
|.-..|+-+-|+++|-+|+.+-++.++--+| ..+|.+||
T Consensus 142 LnqAIErnAfLESELdEke~llesvqRLkdE----ardlrqel 180 (333)
T KOG1853|consen 142 LNQAIERNAFLESELDEKEVLLESVQRLKDE----ARDLRQEL 180 (333)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3344455566777777777666666443333 34455555
No 255
>PF13514 AAA_27: AAA domain
Probab=89.15 E-value=1e+02 Score=41.94 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=50.4
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCC--CCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG--QGTSDEYVDELRKKVQSQETENEKLKLEHVQLS 784 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~--~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ 784 (1102)
......++.++...+.+...++.++...+.+...++..- .+... .....+.+..+. .+.....++.+++.+...+.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~-gL~~~~~~~~~~~~l~~l~-~l~~~~~~~~~~~~ri~~~~ 756 (1111)
T PF13514_consen 679 EEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAEL-GLPADASPEEALEALELLE-ELREALAEIRELRRRIEQME 756 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666777777777776664333311 11111 111112223333 45555666777777777777
Q ss_pred HHHHhHHHHHHHHHHH
Q 001316 785 EENSGLHVQNQKLAEE 800 (1102)
Q Consensus 785 ee~~~L~~e~~kl~~e 800 (1102)
.+...+..++..|...
T Consensus 757 ~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 757 ADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666654
No 256
>PRK10869 recombination and repair protein; Provisional
Probab=88.86 E-value=44 Score=41.74 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH----HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 770 ETENEKLKLEHV----QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 770 ~~E~e~lk~~~~----~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
...+.+|+++|- .+.+-.+.+..+++.+.. ....+..|..++.++..+..++.++|..+|...+
T Consensus 305 l~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~-----------~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 305 LSKQISLARKHHVSPEELPQHHQQLLEEQQQLDD-----------QEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777654 444444445555544444 3344555666666666666666666666665544
No 257
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.16 Score=58.89 Aligned_cols=28 Identities=43% Similarity=0.993 Sum_probs=23.9
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhh
Q 001316 1054 HMCKVCFESPT---AAILLPCRHFCLCKSCSL 1082 (1102)
Q Consensus 1054 ~~C~IC~~~~~---~~vl~pCgH~~~C~~C~~ 1082 (1102)
..|.||++... ..+++||+|+ ||..|..
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~k 215 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHV-FCKSCLK 215 (445)
T ss_pred ccceeeehhhcCcceeeecccchH-HHHHHHH
Confidence 47999999765 4889999999 9999954
No 258
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.41 E-value=31 Score=43.54 Aligned_cols=80 Identities=21% Similarity=0.155 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLA-GEVTKLSLQNAKLEKELLAARESMHSRGAA 849 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~-eev~kL~~e~~~l~~el~a~k~~~~~we~q 849 (1102)
..++.|+..+..-..+...+..+.++++.+.....++-.--.++..+|+ ++++.+..+...|.+|.....+.+-....+
T Consensus 110 ~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~ 189 (660)
T KOG4302|consen 110 PYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEE 189 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888899999999999999988888777777778888888 899999999999999987777777666666
Q ss_pred h
Q 001316 850 M 850 (1102)
Q Consensus 850 i 850 (1102)
|
T Consensus 190 I 190 (660)
T KOG4302|consen 190 I 190 (660)
T ss_pred H
Confidence 5
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.36 E-value=0.19 Score=58.32 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 156 EVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 156 ~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
.+++ .+...|+.+..+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3443 4566777776555 5699999999999998864
No 260
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.29 E-value=0.23 Score=56.63 Aligned_cols=40 Identities=38% Similarity=0.988 Sum_probs=32.5
Q ss_pred ccccccccccceEEeCC--CCcccchhhh-hcCCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPC--RHFCLCKSCS-LACSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pC--gH~~~C~~C~-~~~~~CPiCR~~i~~ 1096 (1102)
.|+||++.-.--++ -| ||+ .|..|. .....||.||.+|+.
T Consensus 50 eCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 50 DCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred cCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 79999877666665 46 899 999998 555779999999984
No 261
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.22 E-value=52 Score=38.03 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHH
Q 001316 611 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQ-NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTV 689 (1102)
Q Consensus 611 ~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~q-kL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i 689 (1102)
.+++-+..|..|+..++-.|+.-+......-...+..+. ++..-|.|....|+.-..+...... .+.++..-+
T Consensus 71 ~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~------eN~~L~eKl 144 (309)
T PF09728_consen 71 LAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLRE------ENEELREKL 144 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHH
Q ss_pred HHHHHHhhhhhhhHH----HhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHhhhccCCcCCCCCCCCChHH
Q 001316 690 TRLMSQCNEKAFELE----IKSADNRILQEQLQNKCSENKKLQEKVNLLEQ-------QLACQNGDKSAGSSGQGTSDEY 758 (1102)
Q Consensus 690 ~~l~~ql~ek~~el~----~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~-------ql~~~~~~~~~~~~~~~~~e~~ 758 (1102)
..+-.|.+..+..++ -+..+...+.-.|.........-......++. ++..+.+....++.....=.+-
T Consensus 145 K~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~K 224 (309)
T PF09728_consen 145 KSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEK 224 (309)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001316 759 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 834 (1102)
Q Consensus 759 ~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~ 834 (1102)
.+++...|.---.=..-++++...+......|+.++..+...+..+-.-.-..+.|-..+.++++.+..++.+|+.
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 262
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.21 E-value=75 Score=39.23 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--HHhhc--cccccchhhh
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI--IENGE--ASMANASMVD 684 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki--~~s~~--~s~~~~~~~e 684 (1102)
++.||+--..|.+.+--..+.+..+...... --.-+.+|+.++..|++|+..|.+.+ ++... -.....+...
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~----~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~ 336 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQH----MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVER 336 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3666776666666555444444222111100 01225678888889998888888777 11111 1223334445
Q ss_pred hHHHHHHHHHHhhhhhhhHH
Q 001316 685 MQQTVTRLMSQCNEKAFELE 704 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~ 704 (1102)
|..+-.+|...|++...++.
T Consensus 337 mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 337 MNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666777777776666655
No 263
>PRK12377 putative replication protein; Provisional
Probab=88.13 E-value=0.38 Score=53.62 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=36.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
..+||........+..++. .+..++..+..+. ..|+-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3467775544556666665 5666777776654 4688899999999999863
No 264
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.96 E-value=66 Score=42.49 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhhh---HHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHH
Q 001316 653 REIQEKRRQMRILEQRIIENGEASMANASMVDM---QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 729 (1102)
Q Consensus 653 ~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~---~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ 729 (1102)
.=++|.-.||+-|.+.+.-++.-.---.+..-. ..+......+|++++.+++...-.++.+++.+..-.-....|.+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 347888889999988886554411100011000 01222333344444444444444444444444444444445555
Q ss_pred HHHHHHHHH
Q 001316 730 KVNLLEQQL 738 (1102)
Q Consensus 730 ev~~Lk~ql 738 (1102)
+++.++.+|
T Consensus 484 ~~~~~k~~L 492 (1041)
T KOG0243|consen 484 EKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHH
Confidence 555555544
No 265
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.92 E-value=37 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHH
Q 001316 612 LVEQVKMLAGEIAFSSSNLKRL 633 (1102)
Q Consensus 612 l~eq~k~l~~e~a~~~s~Lk~l 633 (1102)
++++++.+-.++......|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l 180 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDR 180 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444444443
No 266
>PRK08116 hypothetical protein; Validated
Probab=87.90 E-value=0.31 Score=54.90 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=35.8
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhc--CCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME--GVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~--G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++||.-. .+..+...|. .+...++.+.+ +.|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 357888654 3455555665 56667776654 345569999999999999886
No 267
>PRK05642 DNA replication initiation factor; Validated
Probab=87.66 E-value=0.47 Score=52.27 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhc---CC-ceeEEeeccCCCCCccccC
Q 001316 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAME---GV-NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~---G~-N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-...|+||.-+.. . +... ...+....+ ++ ...++-||++|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~-~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPG-A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcC-C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3446899987733 2 2333 333433333 22 2468899999999999875
No 268
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.39 E-value=90 Score=39.20 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 775 KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 775 ~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
+.+.....+.+....|-.-+++-..+..+....... +.+.+..+..++..|..++...+.+
T Consensus 279 ~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~-------l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 279 EAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT-------LPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555555555555555555444444444444 4444444444444444444433333
No 269
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.37 E-value=19 Score=40.25 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh------hccccccchhhhh---HHHHHHHHHHhhhhhhhHHHhhHhHHHHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIEN------GEASMANASMVDM---QQTVTRLMSQCNEKAFELEIKSADNRILQE 715 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s------~~~s~~~~~~~e~---~~~i~~l~~ql~ek~~el~~k~a~~~~lqe 715 (1102)
..|++||..|-.-++=+|++|+.-+... +...+. ...-|. ...-..|...-++..-+|-+|...+..+.-
T Consensus 24 E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s-~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 24 EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYS-ALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 3567777777777777777777655221 111110 000011 112233444444555566666666666666
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhh----ccCCcCCCCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHHHhHHHHHhH
Q 001316 716 QLQNKCSENKKLQEKVNLLEQQLACQ----NGDKSAGSSGQGTSDEYV-DELRKKVQSQETENEKLKLEHVQLSEENSGL 790 (1102)
Q Consensus 716 qL~~~e~ei~~L~~ev~~Lk~ql~~~----~~~~~~~~~~~~~~e~~~-~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L 790 (1102)
||+...-.|..|..+|.+++-.|-.. ......+.-- ......+ .-+.----.+-+-+++|+.+|..=.||..+|
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~-stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrl 181 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPC-STPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRL 181 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccc-CCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 66666666666666666666555211 1100000000 0000000 0000000011234688888888888888888
Q ss_pred HHHHHHHH
Q 001316 791 HVQNQKLA 798 (1102)
Q Consensus 791 ~~e~~kl~ 798 (1102)
+.|+.-|.
T Consensus 182 e~e~k~lq 189 (307)
T PF10481_consen 182 EAEVKALQ 189 (307)
T ss_pred HHHHHHHh
Confidence 88776665
No 270
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=0.34 Score=52.55 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=34.0
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
...|+||.+.-++ ++|-||||+ +|..|...+ ..||+|..+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 3489999885544 567899999 999998765 459999988654
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.30 E-value=0.51 Score=51.99 Aligned_cols=49 Identities=10% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
....|+||.-+.. .+...+..+.. ++. ......++-||++|+||||.+.
T Consensus 15 ~~~~~~fd~f~~~--~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYPG--DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCccccccC--ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 3446889876643 55666653322 221 2223478999999999999986
No 272
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.27 E-value=51 Score=40.91 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 779 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 779 ~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
....|.+-..++..|++.|.. ....++.|+.++.++..+-.++.++|...|...
T Consensus 319 ~~~~l~~~~~~~~~el~~L~~-----------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 319 TIEDLLEYLDKIKEELAQLDN-----------SEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred CHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655 334466677777777777777777777666443
No 273
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.19 E-value=1.5e+02 Score=41.40 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 001316 608 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV-----QIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~-----Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.+.-|.+++..+..+++.....+.+|..+...-|.+... .+..-.+++....++++.+..++
T Consensus 750 ~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l 816 (1353)
T TIGR02680 750 RLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKA 816 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666667777776666765432 23333444444444444444444
No 274
>PRK06526 transposase; Provisional
Probab=87.02 E-value=0.29 Score=54.74 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=28.7
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
||.-|.+.-+...+..-....+++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 343344555555555544444443 3444 79999999999999864
No 275
>PLN02939 transferase, transferring glycosyl groups
Probab=86.94 E-value=80 Score=41.83 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHh----HHHHHHHHHhhhHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSAD----NRILQEQLQNKCSE 723 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~----~~~lqeqL~~~e~e 723 (1102)
+++.-.|-.+++.+|..|+-|+.+.... .....+-...+.-++.+|++.--++.+..+. ...+-+.|.....|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (977)
T PLN02939 158 LEKILTEKEALQGKINILEMRLSETDAR---IKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234 (977)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhh---hhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHH
Confidence 4455555555666777777777554221 0000111122333566666665565555332 33456667777777
Q ss_pred HHHHHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQQL 738 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql 738 (1102)
+..|...++.||.++
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 235 NMLLKDDIQFLKAEL 249 (977)
T ss_pred hHHHHHHHHHHHHHH
Confidence 788888888888777
No 276
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.82 E-value=0.38 Score=58.00 Aligned_cols=50 Identities=30% Similarity=0.424 Sum_probs=33.5
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...|+||.-+- +..+...|. .+..++.. -..||. +|-||++|+||||.|.
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~-~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYH-AALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCccccccc-CCchHHHHH-HHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 34699998664 345566665 33334332 123675 9999999999999885
No 277
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.79 E-value=40 Score=34.51 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001316 767 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 846 (1102)
Q Consensus 767 ~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~w 846 (1102)
++...+..+-+.+...|..-...|+.+++....+-.++.--|..+=.++..|.+++..+.....+|+.+|.+.+..-..+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677777777777777777777777777777777777777788888888888888888877776654444
Q ss_pred h
Q 001316 847 G 847 (1102)
Q Consensus 847 e 847 (1102)
.
T Consensus 86 ~ 86 (140)
T PF10473_consen 86 D 86 (140)
T ss_pred H
Confidence 4
No 278
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.75 E-value=1.1e+02 Score=39.65 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
|+..|.+..-.|..-.+++..|-.-|.+++..|.+|.+.-....
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e 133 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAE 133 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455666666666666666666665543333
No 279
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.71 E-value=0.2 Score=64.09 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred hhcccccccc
Q 001316 867 GRKGRLSGRS 876 (1102)
Q Consensus 867 ~~~ee~~~l~ 876 (1102)
....++..|+
T Consensus 268 ~l~~Elk~Lr 277 (722)
T PF05557_consen 268 RLREELKHLR 277 (722)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3344555555
No 280
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.61 E-value=25 Score=34.96 Aligned_cols=42 Identities=33% Similarity=0.282 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 687 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 687 ~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
+.+.+|.++|-.++- +...+|+++...+.+-..|..||-.|-
T Consensus 16 ~~ve~L~s~lr~~E~-------E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 16 QLVERLQSQLRRLEG-------ELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544322 223445555555555555555544444
No 281
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.59 E-value=0.41 Score=57.91 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=31.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+||.-+.. .++...|. .+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 5899986643 34555664 44444432111244 48899999999999885
No 282
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.56 E-value=76 Score=37.53 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
...++.++.....++..++.++..++.++
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 283
>PRK09087 hypothetical protein; Validated
Probab=86.53 E-value=0.51 Score=51.82 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 137 ~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.....|+||.-+.. ..+..+|.. +.....-.+..++-||++||||||-+.
T Consensus 13 ~~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 13 SHDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 33456899987753 334557763 333222235568999999999999986
No 284
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=86.14 E-value=76 Score=37.15 Aligned_cols=75 Identities=25% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001316 760 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 839 (1102)
Q Consensus 760 ~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~ 839 (1102)
.||.--|.-...||.=||++.+.| ..|++.+...-+||.+.-.-.-+||.- --+|.--++.+|...|.+|
T Consensus 508 yELEVLLRVKEsEiQYLKqEissL-------kDELQtalrDKkyaSdKYkDiYtELSi---aKakadcdIsrLKEqLkaA 577 (593)
T KOG4807|consen 508 YELEVLLRVKESEIQYLKQEISSL-------KDELQTALRDKKYASDKYKDIYTELSI---AKAKADCDISRLKEQLKAA 577 (593)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHhhhhccccchhHHHHHHHH---HHHhhhccHHHHHHHHHHH
Confidence 344333344456666667666555 456777777667766655555555522 2233445678888888888
Q ss_pred HHhhh
Q 001316 840 RESMH 844 (1102)
Q Consensus 840 k~~~~ 844 (1102)
.+.+.
T Consensus 578 teALg 582 (593)
T KOG4807|consen 578 TEALG 582 (593)
T ss_pred HHHhc
Confidence 77643
No 285
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.97 E-value=0.5 Score=56.23 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+||.... +..+...|. ++..+...--..|| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689988442 345555664 34444443111244 47889999999999875
No 286
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.84 E-value=27 Score=39.02 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=18.4
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
-.+++..++.|...+..+..|.+++..++.
T Consensus 18 eee~~~a~~~L~e~e~~a~~Leek~k~aee 47 (246)
T PF00769_consen 18 EEEMRRAQEALEESEETAEELEEKLKQAEE 47 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655554
No 287
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.40 E-value=0.54 Score=56.85 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.6
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+||.-.. +..+...|. .+..+.+.--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 4688987432 235555555 34444443222344 47889999999999985
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.21 E-value=57 Score=34.85 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIEN---GEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 724 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s---~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei 724 (1102)
+++|++.|..-..-+..|++++... ...++......+.+..+.++-..|++--..-+.-+.-|..|++||......|
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999332 1111112222344444555555555544433444556788999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001316 725 KKLQEKVNLLEQQL 738 (1102)
Q Consensus 725 ~~L~~ev~~Lk~ql 738 (1102)
..|..++..|..+.
T Consensus 98 ~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 98 EALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999887
No 289
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.14 E-value=1.2e+02 Score=38.68 Aligned_cols=76 Identities=32% Similarity=0.353 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHH
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKL 727 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L 727 (1102)
+|-|..|+.-+.++++.|.|++-+.+++--..... +..-++.-| ..=|-.||.||++.....+.|
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~-~~n~El~sL--------------qSlN~~Lq~ql~es~k~~e~l 453 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQ-DCNLELFSL--------------QSLNMSLQNQLQESLKSQELL 453 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCc-ccchhhHHH--------------HHHHHHHHHHHHHHHHhHHHH
Confidence 55688888888888888888886655542111000 111112211 123445667776666666666
Q ss_pred HHHHHHHHHHH
Q 001316 728 QEKVNLLEQQL 738 (1102)
Q Consensus 728 ~~ev~~Lk~ql 738 (1102)
|.+.+.|-.-+
T Consensus 454 q~kneellk~~ 464 (861)
T PF15254_consen 454 QSKNEELLKVI 464 (861)
T ss_pred HHhHHHHHHHH
Confidence 66665555433
No 290
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.09 E-value=0.7 Score=51.39 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
..+||........|..++. .+..+++.+..|+ ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4678765433445555665 3444555554443 3688999999999999863
No 291
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.85 E-value=76 Score=40.97 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=19.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCC-----eEEEeeCC
Q 001316 98 SGDSISVTIRFRPLSEREFQRGD-----EIAWYADG 128 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~-----~~~~~~~~ 128 (1102)
.+|...+.||.-|+...=...+. .+.|++.+
T Consensus 123 ~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 123 EDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred cCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 34667888888887655433222 46688764
No 292
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=84.83 E-value=48 Score=42.20 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhh
Q 001316 658 KRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN 697 (1102)
Q Consensus 658 k~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ 697 (1102)
-.++|+.++.-+..++-.+.. ....++...|.++..+++
T Consensus 576 ~kek~ea~~aev~~~g~s~~~-~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 576 IKEKMEALKAEVASSGASSGD-ELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred HHHHHHHHHHHHHhcCccccC-CCCHHHHHHHHHHHHHHH
Confidence 556677777777775533333 444577777877777665
No 293
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.77 E-value=0.79 Score=49.48 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=33.1
Q ss_pred CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 136 ~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
++....|+||.... + .+..++..+-. + +..+....|+-||++|+||||.+.
T Consensus 6 ~~~~~~~~~~~~~~-~-~~~~~~~~l~~-~---~~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 6 VGLPDDPTFDNFYA-G-GNAELLAALRQ-L---AAGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCCchhhcCcCc-C-CcHHHHHHHHH-H---HhcCCCCeEEEECCCCCCHHHHHH
Confidence 33445688887763 2 44445543222 2 225667789999999999999874
No 294
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.64 E-value=16 Score=33.14 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++|+.+...|.+++..|..+|++|..
T Consensus 28 eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 28 EELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44444445555556666666666655
No 295
>PF13514 AAA_27: AAA domain
Probab=84.60 E-value=1.7e+02 Score=39.84 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHHHHhhch---------HHHHHHHhh------hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 608 QMDLLVEQVKMLAGEIAFSS---------SNLKRLVDQ------SVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 608 ~~d~l~eq~k~l~~e~a~~~---------s~Lk~l~e~------a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s 672 (1102)
+++-|+.+++.+..+..... ..++.+..+ -...|.+...+.+.+..++...+.++..+..++...
T Consensus 189 ~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 268 (1111)
T PF13514_consen 189 ELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQL 268 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555544432 222222222 223467777788888888888888888777777332
Q ss_pred hc--ccccc-chhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 673 GE--ASMAN-ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 673 ~~--~s~~~-~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.. ..... ....+....|..|..+ ....+..+..+.....++..++.++..+..+|
T Consensus 269 ~~~~~~l~~~~~ll~~~~~I~~L~~~-----------~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~l 326 (1111)
T PF13514_consen 269 EEELDALPVDEELLAHAAEIEALEEQ-----------RGEYRKARQDLPRLEAELAELEAELRALLAQL 326 (1111)
T ss_pred HHHHHhcCCCHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 21 11110 0111223333333332 23445555666666666666777776666666
No 296
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=84.19 E-value=83 Score=38.57 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+-..+.+|+.+|.+....+. +=.|..++.++...+++++.+-+.+
T Consensus 252 ~id~~~~~L~~~l~~~~~~l~---------~Leld~aeeel~~I~e~ie~lYd~l 297 (570)
T COG4477 252 NIDSRLERLKEQLVENSELLT---------QLELDEAEEELGLIQEKIESLYDLL 297 (570)
T ss_pred cHHHHHHHHHHHHHHHHhHHH---------HhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455666666654322222 2234667777777778887777766
No 297
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.13 E-value=12 Score=33.55 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001316 719 NKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 719 ~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..++++.+||..++.+.+++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~ 21 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKN 21 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777766
No 298
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.04 E-value=88 Score=38.33 Aligned_cols=225 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccchhhhhHHH
Q 001316 612 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA---SMANASMVDMQQT 688 (1102)
Q Consensus 612 l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~---s~~~~~~~e~~~~ 688 (1102)
|.|-+..|.++..+..++|+-|.|+|.- .+.-..++..++++.+--++.-.-++....+- +....+..-+...
T Consensus 343 LkEkv~~lq~~l~eke~sl~dlkehass----Las~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe 418 (654)
T KOG4809|consen 343 LKEKVNALQAELTEKESSLIDLKEHASS----LASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPE 418 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChh
Q ss_pred HHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhh
Q 001316 689 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS 768 (1102)
Q Consensus 689 i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~ 768 (1102)
++++..+|+.-.-+|+ ..=.-.++.+.++.++-++|..+| .+.+.-|.++..+...
T Consensus 419 ~~d~i~~le~e~~~y~-------de~~kaqaevdrlLeilkeveneK-----------------nDkdkkiaeler~~kd 474 (654)
T KOG4809|consen 419 FADQIKQLEKEASYYR-------DECGKAQAEVDRLLEILKEVENEK-----------------NDKDKKIAELERHMKD 474 (654)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh-----------------ccccchhhhcCchhhh
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 848 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~ 848 (1102)
|-.-...++.+...=.+++.++..+...-.+..-.....-. +++|+....+-.+++.+-+...+..
T Consensus 475 qnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq------------~eel~~alektkQel~~tkarl~st-- 540 (654)
T KOG4809|consen 475 QNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQ------------IEELMNALEKTKQELDATKARLAST-- 540 (654)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH------------HHHHHHHHHHHhhChhhhhhHHHHH--
Q ss_pred hhhhhcccccccchhhhhhhccccccccccccCCcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 849 AMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKE 919 (1102)
Q Consensus 849 qiqwv~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~~~e~q~aLeael~~k~ 919 (1102)
|+..+.+..-+..|+. +++.+|++.|..|+
T Consensus 541 -------------qqslaEke~HL~nLr~----------------------------errk~Lee~lemK~ 570 (654)
T KOG4809|consen 541 -------------QQSLAEKEAHLANLRI----------------------------ERRKQLEEILEMKK 570 (654)
T ss_pred -------------HHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHhhh
No 299
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.99 E-value=0.99 Score=49.08 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=32.4
Q ss_pred CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 136 ~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
......|+||..++. . +..++. .++.++.. .+.+..|+-||++|+||||.+.
T Consensus 9 ~~~~~~~~~d~f~~~-~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 9 LGPPPPPTFDNFVAG-E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCChhhhcccccC-C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 344456899998832 2 233433 23333331 2345679999999999999874
No 300
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=83.76 E-value=0.29 Score=57.88 Aligned_cols=41 Identities=24% Similarity=0.724 Sum_probs=33.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKI 1094 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~---------~~~CPiCR~~i 1094 (1102)
.-.|.+|.+...+.+...|.|. ||.-|... --.||+|-.+.
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3479999999999999999999 99999521 15599997654
No 301
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.65 E-value=0.47 Score=53.09 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=40.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccceeecc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~~i~if 1101 (1102)
..+|++|+.+..=+.+.+|+|-+||..|... .+.||+|-..+...+.|.
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~ 189 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIH 189 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccc
Confidence 3479999999999999999999999998543 355999999888776654
No 302
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.37 E-value=91 Score=35.71 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHH---hhh
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ---NKC 721 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~---~~e 721 (1102)
..+-..|+.++++.-+++.++..+. +++...|.+++...++..-.+.....+.+.+.+..+ -.-
T Consensus 40 ~ekRdeln~kvrE~~e~~~elr~~r-------------deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~ 106 (294)
T COG1340 40 AEKRDELNAKVRELREKAQELREER-------------DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGG 106 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3444456666666666655554432 255666777777777766666665556666666655 445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql 738 (1102)
-.+..|+.++..|.-..
T Consensus 107 ~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 107 RSIKSLEREIERLEKKQ 123 (294)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56677777777777544
No 303
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.24 E-value=1.3e+02 Score=37.59 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELAS 809 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAs 809 (1102)
+.+-+...+++.+...++........|..+...+..++.++..+.+..+..+.
T Consensus 321 ~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 321 EDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666666667777777777888877777777777776555444433
No 304
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=83.04 E-value=66 Score=33.88 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHh-------hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIK-------SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k-------~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+-+...|...++|++.+|..- --.+.+.++.|.....++..++.++...+..+
T Consensus 48 kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~ 107 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEEL 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777776666522 11566667777777777777766666666544
No 305
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.90 E-value=16 Score=39.13 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
|+.-|.-++..+++....|+.||..|.+
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666667777777766655
No 306
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.81 E-value=1.1 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=18.1
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+....++-||++|+|||+++.
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455689999999999999763
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=1.5 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=18.9
Q ss_pred HHHHhcCCce-eEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNG-TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~-tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.-. .++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344444443 4999999999999886
No 308
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.74 E-value=89 Score=35.18 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=17.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhh
Q 001316 1021 TPKEEPLVARLKARMQEMKEKEQKY 1045 (1102)
Q Consensus 1021 ~~~~~~~~~~l~~~l~e~k~~~~~~ 1045 (1102)
.+...+.++.|+.+.++++.++..+
T Consensus 273 ~s~~s~l~dQLK~qNQEL~ski~EL 297 (307)
T PF10481_consen 273 NSSSSQLLDQLKAQNQELRSKINEL 297 (307)
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHH
Confidence 3444567888888888887766543
No 309
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.65 E-value=2.2e+02 Score=39.67 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
.++..|..+|..+.+++..+.+++
T Consensus 749 ~~IaeL~~~i~~l~~~l~~l~~r~ 772 (1353)
T TIGR02680 749 ARLAAVDDELAELARELRALGARQ 772 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665555
No 310
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=82.56 E-value=1.4e+02 Score=37.14 Aligned_cols=127 Identities=22% Similarity=0.183 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHH-hhhhh------HHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK-KVQSQ------ETENEKLKLEHV 781 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~-~~~~q------~~E~e~lk~~~~ 781 (1102)
....+++++.-........+.++...|.+....+..+ +.-|..|+. -+... ..|.+.++++..
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k----------EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~ 284 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK----------EKLIESLKEGCLEEGFDSSTNSIELEELKQERD 284 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH----------HHHHHHHHhcccccccccccchhcchhhHHHHH
Confidence 4444555555555666666666666665543333322 233333332 00000 145788888888
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhh
Q 001316 782 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL---EKELLAARESMHSRGA 848 (1102)
Q Consensus 782 ~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l---~~el~a~k~~~~~we~ 848 (1102)
.+.++...|+.+++.+..++.-....+.. +-..+.+.+..+......+ +.++........+|..
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~e 351 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTTEAELRLYYQELYHYRE 351 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 88888888888887777766444443333 2333333333333333222 4444444444444443
No 311
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=23 Score=43.81 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.++.++......|.+++..|..++..+..
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~ 450 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKR 450 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555554
No 312
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=82.30 E-value=56 Score=37.21 Aligned_cols=130 Identities=25% Similarity=0.209 Sum_probs=73.1
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 765 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 765 ~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
...|.+.|+|+|-|.+..|+|.. -|-+.|..|+ .+..-.+..|..++.-|+.||+.+|-+++
T Consensus 29 ~hRQKV~EVEKLsqTi~ELEEai---------------LagGaaaNav---rdYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 29 MHRQKVLEVEKLSQTIRELEEAI---------------LAGGAAANAV---RDYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------HhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888887776642 2333344443 34456888899999999999998886643
Q ss_pred hhhhhhhhhcccccccchhhhhhhccccccccccccCCcccccccCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 845 SRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNL-DPDDLKLELQARKQREAALEAALAEKEFLED 923 (1102)
Q Consensus 845 ~we~qiqwv~d~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk-~~~~~k~el~~~~e~q~aLeael~~k~~~ee 923 (1102)
+.+.. .++.-+++-+. .=+ ..+|. .++.++-|++-.+.+.+-.+..-++.-|+.+
T Consensus 91 -RVA~v-------------vANEWKD~nDk---------vMP-VKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLke 146 (351)
T PF07058_consen 91 -RVATV-------------VANEWKDENDK---------VMP-VKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKE 146 (351)
T ss_pred -hhhhh-------------hcccccccCCc---------ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 11111222221 112 23354 6777777777777666555544333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001316 924 EYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 924 El~~~lee~k~~~~~Le~eL 943 (1102)
-| +.++..|+..|
T Consensus 147 K~-------klRLK~LEe~L 159 (351)
T PF07058_consen 147 KL-------KLRLKVLEEGL 159 (351)
T ss_pred HH-------HHHHHHHHhhc
Confidence 33 34445555554
No 313
>PRK08181 transposase; Validated
Probab=81.94 E-value=1.2 Score=50.38 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=27.0
Q ss_pred eceecCCCCChhHHHhhh-hHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 144 FDRVFGPHANSQEVYDVA-ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~-~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 344444544544444322 112332 5555 89999999999999865
No 314
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.86 E-value=1 Score=53.42 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=34.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 452 (1102)
Q Consensus 390 ~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~ 452 (1102)
.+++.|.| -+.+.-+.-|+-....+.+.... ++. .-+...+...+..|..-|+++-
T Consensus 236 Gl~~~I~~--Pd~e~r~aiL~kka~~~~~~i~~---ev~--~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 236 GLVVEIEP--PDDETRLAILRKKAEDRGIEIPD---EVL--EFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred eeEEeeCC--CCHHHHHHHHHHHHHhcCCCCCH---HHH--HHHHHHhhccHHHHHHHHHHHH
Confidence 36777777 46667777777766666554322 111 2245667777777777776653
No 315
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.82 E-value=18 Score=33.12 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQ 737 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~q 737 (1102)
|...++.+-..|.-||-||..||.+
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKek 33 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555443
No 316
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.67 E-value=1.3 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=17.8
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+....++-||++|+|||+++.
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4455678999999999999863
No 317
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.66 E-value=0.75 Score=52.87 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=33.5
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCCccccCC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
.+||.+-........++. .+..+++....| ..-.|+-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~-~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALM-AALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHH-HHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456554333335566666 346666665543 234699999999999999864
No 318
>PRK08727 hypothetical protein; Validated
Probab=81.55 E-value=1.1 Score=49.18 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=28.2
Q ss_pred CCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCCccccC
Q 001316 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 138 ~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~tIfaYGqTgSGKT~Tm~ 192 (1102)
....|+||.-+.... + .+..+ . .+..|+. -.|+-||++|+||||.+.
T Consensus 12 ~~~~~~f~~f~~~~~-n--~~~~~-~----~~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 12 YPSDQRFDSYIAAPD-G--LLAQL-Q----ALAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCCcCChhhccCCcH-H--HHHHH-H----HHHhccCCCeEEEECCCCCCHHHHHH
Confidence 344688988664332 2 22211 1 2222332 359999999999999875
No 319
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.25 E-value=0.89 Score=46.65 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHhcC-CceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEG-VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+++.+-.+ .+..++..|+||||||++|.
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhh
Confidence 344444443 35667778899999999997
No 320
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.17 E-value=80 Score=35.55 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 818 LAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 818 l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
+..++.........+...+...|..
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 321
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.90 E-value=90 Score=33.97 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
.....|++++.+.+.++..++.+...+....... ..-++-.....+..++....-.+..-......|+..|...+..+.
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~ed-LAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGRED-LAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688888888888888888875554332211 111233344445555555444455555566666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 001316 726 KLQEKVNLLEQQL 738 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql 738 (1102)
+++.+...|.-+.
T Consensus 130 e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 130 ELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655444
No 322
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.79 E-value=27 Score=37.47 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=59.2
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
+.+...++..+.....++..++.++..|+..+..+.. . . .++ .|+..+-.++..|..+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~---~---r-~~~---------------~eR~~~l~~l~~l~~~ 118 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK---G---R-EES---------------EEREELLEELEELKKE 118 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c---c-ccc---------------HHHHHHHHHHHHHHHH
Confidence 5566677777777777888888888888877722211 0 1 011 2334444455555555
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhc
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVN 854 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi----qwv~ 854 (1102)
...|..++.++.. - --....++..++..++..+..|-..| +|+.
T Consensus 119 ~~~l~~el~~~~~----------------------~--Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 119 LKELKKELEKYSE----------------------N--DPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHHHHHHHHHHHh----------------------c--CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555554433 0 01233445566677788888888887 6764
No 323
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.03 E-value=18 Score=41.78 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+..+.++|.+.+.+.++|..++..|+.+.
T Consensus 59 e~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 59 EEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554444433
No 324
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.01 E-value=48 Score=39.64 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=20.5
Q ss_pred HhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 695 QCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 695 ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
||+.....|+.+..+...++..+...+++-..++..++.+..++
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444443
No 325
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.97 E-value=88 Score=37.26 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTV 853 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv 853 (1102)
|+.|=+++.....-...|+.....-...+..|+..+.-|
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~v 362 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKV 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555556666555566666776655433
No 326
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.90 E-value=76 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred hhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 701 FELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 701 ~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
.+.+-..+.+..|++++.....+...|+.+++.++.
T Consensus 45 ~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 45 LDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666666666666666666666654
No 327
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=79.89 E-value=3.4 Score=48.54 Aligned_cols=75 Identities=21% Similarity=0.196 Sum_probs=51.5
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHHhc----CCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc
Q 001316 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME----GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD 214 (1102)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~----G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~ 214 (1102)
...+.||++.+.-.--..+.+.++..++.+++. -.---|.-||+.|+|||+. ++.|+..+.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll--------------AraiA~elg- 173 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ--------------CELVFKKMG- 173 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH--------------HHHHHHHcC-
Confidence 345788888877666777788888888888774 2233577899999999975 345555442
Q ss_pred CCCceeEEEeehhhhhcc
Q 001316 215 TPGREFLLRVSYLEIYNE 232 (1102)
Q Consensus 215 ~~~~~~~v~vS~lEIYnE 232 (1102)
.. .|.||.=||+..
T Consensus 174 ---~~-~i~vsa~eL~sk 187 (413)
T PLN00020 174 ---IE-PIVMSAGELESE 187 (413)
T ss_pred ---CC-eEEEEHHHhhcC
Confidence 22 367777666644
No 328
>PRK10869 recombination and repair protein; Provisional
Probab=79.84 E-value=1.5e+02 Score=37.07 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 802 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~ 802 (1102)
+.+-+...++..+..+++.+......|..+...+..++..+..+.+
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555555555554333
No 329
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.82 E-value=2e+02 Score=37.40 Aligned_cols=108 Identities=25% Similarity=0.313 Sum_probs=61.0
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
......++++|...+++-..|...+....+++ ..++.++..-..-+++|+.+...+.+.
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~l---------------------E~~~~qL~E~E~~L~eLq~eL~~~keS 646 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQL---------------------ESLKNQLKESEQKLEELQSELESAKES 646 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666666666665555555555444 222333333344456667777777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
+..++.++......+......+ +.+..++..+......|+.||...|..
T Consensus 647 ~s~~E~ql~~~~e~~e~le~~~-------~~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 647 NSLAETQLKAMKESYESLETRL-------KDLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777766443333333 334445666666666667776655544
No 330
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.72 E-value=9.1 Score=41.66 Aligned_cols=54 Identities=37% Similarity=0.342 Sum_probs=39.8
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee 786 (1102)
.++...++++|+.+..+...++++++.|+.|. |++.+++..|.|+
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~-----------------------------------e~~~~EydrLlee 201 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQS-----------------------------------EGLQDEYDRLLEE 201 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHcccHHHHHHHH
Confidence 45667777777788888888888888887776 6666777777777
Q ss_pred HHhHHHHHH
Q 001316 787 NSGLHVQNQ 795 (1102)
Q Consensus 787 ~~~L~~e~~ 795 (1102)
++.|..+.+
T Consensus 202 ~~~Lq~~i~ 210 (216)
T KOG1962|consen 202 YSKLQEQIE 210 (216)
T ss_pred HHHHHHHHh
Confidence 777776654
No 331
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.20 E-value=18 Score=41.92 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=5.8
Q ss_pred HHHHhHHHHHhHHHHH
Q 001316 779 EHVQLSEENSGLHVQN 794 (1102)
Q Consensus 779 ~~~~L~ee~~~L~~e~ 794 (1102)
+...|+.+...|..|+
T Consensus 65 eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 65 ELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 332
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.14 E-value=1.1e+02 Score=34.04 Aligned_cols=134 Identities=18% Similarity=0.140 Sum_probs=72.5
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 001316 782 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELK------NLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 855 (1102)
Q Consensus 782 ~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk------~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiqwv~d 855 (1102)
.|.-....-+.|++-+.....|.|..-.-+++.+. |.-.+..+|..+...-.++|+.+...++-|.= --|
T Consensus 133 ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkF----TPd 208 (330)
T KOG2991|consen 133 ILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKF----TPD 208 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee----cCC
Confidence 33444444445555555555555544333333332 22346677777777777777777777777731 000
Q ss_pred -cccccchhhhhhhccccccccccccCCcccccccCCCCchhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 856 -VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQA-----RKQREAALEAALAEKEFLEDEYRKKV 929 (1102)
Q Consensus 856 -~~r~~~q~l~~~~~ee~~~l~~~~~~~~~~~~~~~wk~~~~~k~el~~-----~~e~q~aLeael~~k~~~eeEl~~~l 929 (1102)
..=+-|-+ .+|.+..+-.+ .--+-..|+.+|.-.....+||.+..
T Consensus 209 S~tGK~LMA-----------------------------KCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq 259 (330)
T KOG2991|consen 209 SKTGKMLMA-----------------------------KCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ 259 (330)
T ss_pred CcchHHHHH-----------------------------HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH
Confidence 00000000 12222222211 11122337777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 001316 930 EESKRREEALENDLANMWV 948 (1102)
Q Consensus 930 ee~k~~~~~Le~eL~~m~v 948 (1102)
+++-.-+.+|-++++.|-.
T Consensus 260 ~eL~dfm~eLdedVEgmqs 278 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQS 278 (330)
T ss_pred HHHHHHHHHHHHHHhcchh
Confidence 8888888888888888763
No 333
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=79.09 E-value=0.68 Score=51.79 Aligned_cols=41 Identities=32% Similarity=1.027 Sum_probs=29.0
Q ss_pred cccccccccccceE--EeCCCCcccchhhhhcC--CCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC--SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~v--l~pCgH~~~C~~C~~~~--~~CPiCR~~i~~ 1096 (1102)
..|.-| +.+.-+. ++||-|+ ||-+|+..- +.||.|--.|.+
T Consensus 91 HfCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 91 HFCDRC-DFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred Eeeccc-CCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 468888 2222221 3699999 999997665 479999887764
No 334
>PF15294 Leu_zip: Leucine zipper
Probab=78.83 E-value=1e+02 Score=35.14 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA--SAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lA--saa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
..+........+|+..|..++..+.......++.. ...+.++.+|+..|..+..+..+.-..
T Consensus 149 ~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d 212 (278)
T PF15294_consen 149 KSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQD 212 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34445555666777777777777777555555532 335666777777777776555444333
No 335
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.75 E-value=1.5 Score=42.44 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+...+.......++.+|++|+|||+.+.
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3333333344568899999999998763
No 336
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=78.09 E-value=1.2 Score=50.06 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=19.3
Q ss_pred eeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEE
Q 001316 256 VEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIF 299 (1102)
Q Consensus 256 v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If 299 (1102)
|+.-+.+.|.++.....+..+|. + .....+||.|+|+
T Consensus 63 vK~~tvh~vstpq~sKai~~k~q---H----siSytlsrnqsVv 99 (429)
T KOG3842|consen 63 VKPSTVHIVSTPQASKAISDKGQ---H----SISYTLSRNQSVV 99 (429)
T ss_pred cccceeEEecChhhhhhhhcccc---c----eEEEEecCCceEE
Confidence 34555666666665544443332 2 2334567777765
No 337
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.66 E-value=8.2 Score=37.60 Aligned_cols=41 Identities=34% Similarity=0.473 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 759 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 759 ~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+.++.+++.+-..++..||.....|.|||..|..||++|.+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566677899999999999999999999999988
No 338
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.41 E-value=93 Score=32.93 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHH
Q 001316 776 LKLEHVQLSEENSGLHVQNQKLA 798 (1102)
Q Consensus 776 lk~~~~~L~ee~~~L~~e~~kl~ 798 (1102)
++.+...+.+....+..+...+.
T Consensus 128 ~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 128 VEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 339
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=77.06 E-value=1.3e+02 Score=33.60 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.-|.+|.-.|.+|-.-.++||.-...|..=...|...++.+.+
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqs 278 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQS 278 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchh
Confidence 3456666666666666677776666665555555555555544
No 340
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.86 E-value=1.7e+02 Score=35.00 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001316 432 SLIKKYQREISSLKEELDQLK 452 (1102)
Q Consensus 432 ~~i~~~~~ei~~Lk~el~~~~ 452 (1102)
..++.++..|..++++|...+
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~ 24 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQ 24 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 457788888988988886543
No 341
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=76.85 E-value=1.2 Score=53.03 Aligned_cols=44 Identities=25% Similarity=0.847 Sum_probs=35.7
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhhcC----CCCCCCcccccce
Q 001316 1053 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC----SECPICRTKISDR 1097 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~ 1097 (1102)
...|.+|+.--.+.+. ..|||. ||..|.... ..||.|+..+...
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 3489999998888888 599999 999995443 5799999877653
No 342
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.76 E-value=1.4e+02 Score=33.69 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=4.9
Q ss_pred hHHHHHHhhhhh
Q 001316 946 MWVLVAKLKKEV 957 (1102)
Q Consensus 946 m~vlv~kL~ke~ 957 (1102)
+|-||.-+-.-+
T Consensus 204 vahlv~lls~yL 215 (302)
T PF10186_consen 204 VAHLVSLLSRYL 215 (302)
T ss_pred HHHHHHHHHHHh
Confidence 333444444433
No 343
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=76.58 E-value=1.7 Score=51.86 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=51.8
Q ss_pred EEEEEEeCCCChhh-hhcCCeEEEeeCCCEEE------------ecCCCCCcceeeceecCCCCChhHHHhhhhHHHHH-
Q 001316 102 ISVTIRFRPLSERE-FQRGDEIAWYADGDKIV------------RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVK- 167 (1102)
Q Consensus 102 I~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~------------~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~- 167 (1102)
-..+|++.+..+.+ +..|..+........++ .........++|+.|.+.+..-+++.+.+..|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~ 168 (398)
T PTZ00454 89 SNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCP 168 (398)
T ss_pred CEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCH
Confidence 35677777766544 34555554433222111 00011223477888887666666666666666553
Q ss_pred HHhc--C--CceeEEeeccCCCCCcccc
Q 001316 168 AAME--G--VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 168 ~~l~--G--~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+. | ....|+-||++|+|||+..
T Consensus 169 ~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 169 ELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3443 2 2356889999999999876
No 344
>PRK12704 phosphodiesterase; Provisional
Probab=76.56 E-value=78 Score=39.31 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=16.4
Q ss_pred hhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 696 CNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 696 l~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
|+++.-.|+.+..++...++.|..++.++..++.+++.+..
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444443
No 345
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.56 E-value=2.9e+02 Score=37.45 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001316 801 ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 847 (1102)
Q Consensus 801 ~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we 847 (1102)
+..+......+..++.++...+..+..+...+..++..+......|.
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1047)
T PRK10246 712 ETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTAL 758 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445556666666666666666666666665555544443
No 346
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.52 E-value=2.1e+02 Score=35.87 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 001316 911 LEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKK 955 (1102)
Q Consensus 911 Leael~~k~~~eeEl~~~lee~k~~~~~Le~eL~~m~vlv~kL~k 955 (1102)
+...+.+.+..=.++...+++..+++..++.+...||.-|+.|++
T Consensus 363 ~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 363 LEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555555555533
No 347
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=76.38 E-value=60 Score=34.65 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001316 758 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 808 (1102)
Q Consensus 758 ~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lA 808 (1102)
-+.+++.+++....||..||.....|.++|+.|..-.--|-.+--+.+.+|
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkla 92 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLA 92 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHh
Confidence 456778889999999999999999999999998776655555444444444
No 348
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.34 E-value=1 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=18.2
Q ss_pred ccccccccc---cceEEeCCCCcccchhh
Q 001316 1055 MCKVCFESP---TAAILLPCRHFCLCKSC 1080 (1102)
Q Consensus 1055 ~C~IC~~~~---~~~vl~pCgH~~~C~~C 1080 (1102)
.|+||+-.+ -..++.+|.|+ |=..|
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy-~H~~C 144 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHY-MHFAC 144 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHH-HHHHH
Confidence 688887644 33677899999 65566
No 349
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.32 E-value=1.6e+02 Score=34.28 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 001316 903 ARKQREAALEAALAEKEFLEDEYR----KKVEESKRREEALEND 942 (1102)
Q Consensus 903 ~~~e~q~aLeael~~k~~~eeEl~----~~lee~k~~~~~Le~e 942 (1102)
+..+....+.++|.+.+.+.++-+ ..+..++.+...|+..
T Consensus 248 ~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 248 ELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 333444456666666665555543 5566666666666653
No 350
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.28 E-value=60 Score=37.40 Aligned_cols=132 Identities=27% Similarity=0.253 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhh
Q 001316 688 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ 767 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~ 767 (1102)
.+.+|+.+|.+.+-.|+.-=-.| +..+.+-..|.=+|+.|+..| .+.++.+.++...+.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~n-------aQLDNek~~l~yqvd~Lkd~l--------------ee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSN-------AQLDNEKSALMYQVDLLKDKL--------------EELEETLAQLQREYR 136 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-------hhhchHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 55667776665444444110011 133455556666677777666 234455666665555
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH-----------------------------HHHHHHH--HH----
Q 001316 768 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY-----------------------------AKELASA--AA---- 812 (1102)
Q Consensus 768 ~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~-----------------------------ak~lAsa--a~---- 812 (1102)
..+.+.+.+|.....|..+...|..++....+-... +++-|.. ++
T Consensus 137 eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~ 216 (302)
T PF09738_consen 137 EKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGS 216 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCC
Confidence 666667777777777777777666666543221110 1111111 12
Q ss_pred --HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 813 --VELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 813 --~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
+-|+-|.++-..|..+..+|..+|...+
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777776444
No 351
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.79 E-value=2.3 Score=50.60 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=31.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+.||.|.+-+..-+++.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 356666665554445555555555543 23322 2345889999999999765
No 352
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.77 E-value=46 Score=41.24 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
+..++.+...|.+-.+.|..||..|.. +++.+..++.+|+.+|...+..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~---------------------~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKR---------------------ELEELKREIEKLESELERFRRE 465 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666655 6666666777777666655543
No 353
>PF14992 TMCO5: TMCO5 family
Probab=75.38 E-value=1e+02 Score=35.02 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001316 775 KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL 827 (1102)
Q Consensus 775 ~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~ 827 (1102)
..+-....+.++...++.++.++.+.+---+.+-..++-+++.|-+.++++..
T Consensus 113 ~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 113 FSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEE 165 (280)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777888888776666666777788888877777755543
No 354
>PRK06921 hypothetical protein; Provisional
Probab=75.24 E-value=2.3 Score=47.94 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=24.5
Q ss_pred HHhhhhHHHHHHHhc---CCceeEEeeccCCCCCccccCC
Q 001316 157 VYDVAARPVVKAAME---GVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 157 Vy~~~~~plV~~~l~---G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
+|. .+...++.+-. +....|+-||++|+||||.+.+
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 443 45556665532 2345688999999999999863
No 355
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=75.21 E-value=2.2 Score=42.67 Aligned_cols=59 Identities=25% Similarity=0.680 Sum_probs=38.6
Q ss_pred HHHHHhhhcCCCCccccccccccccccceEEe-C---CCCcccchhhhhc-------CCCCCCCcccccce
Q 001316 1038 MKEKEQKYQGNGDPNSHMCKVCFESPTAAILL-P---CRHFCLCKSCSLA-------CSECPICRTKISDR 1097 (1102)
Q Consensus 1038 ~k~~~~~~~~~~~~~~~~C~IC~~~~~~~vl~-p---CgH~~~C~~C~~~-------~~~CPiCR~~i~~~ 1097 (1102)
+.+..+--..-.++.-.+|.||.+...+-=|+ | || +-.|..|... .++||+|++.+.+.
T Consensus 65 ~n~r~qvmnvF~d~~lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 65 INRRLQVMNVFLDPKLYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred HHHHHHHheeecCCCceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 33333333333344455899999877776665 2 66 4599999432 37899999998764
No 356
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.06 E-value=11 Score=37.02 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 759 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 759 ~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+..|.+++.+-..++.+||+....|.|||..|..||++|.+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677899999999999999999999999988
No 357
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.04 E-value=1.7e+02 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcC
Q 001316 604 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN 639 (1102)
Q Consensus 604 ~~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~ 639 (1102)
-....+++..-=-++|..-+.++......+.++..+
T Consensus 60 ~~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~ 95 (312)
T smart00787 60 CTVPLLELYQFSCKELKKYISEGRDLFKEIEEETLI 95 (312)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777777777777777777766666665543
No 358
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=75.03 E-value=3.3 Score=49.97 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=48.3
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecC---C---------CCCcceeeceecCCCCChhHHHhhhhHHHHHH-
Q 001316 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNE---Y---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKA- 168 (1102)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~---~---------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~- 168 (1102)
..+|++.++.+.+ +..|..+.+......++..- . ...-.-+|+.|.+-+..-+.+.+.+..|+...
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5788988887765 46676666655433322110 0 00111345555544444455555554454432
Q ss_pred Hhc--CC--ceeEEeeccCCCCCcccc
Q 001316 169 AME--GV--NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 169 ~l~--G~--N~tIfaYGqTgSGKT~Tm 191 (1102)
.+. |. .-.|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 222 21 124778999999999876
No 359
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=74.98 E-value=0.86 Score=51.60 Aligned_cols=50 Identities=18% Similarity=0.610 Sum_probs=32.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc--cccceeecc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT--KISDRLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~--~i~~~i~if 1101 (1102)
....|+||+....+-.++----++||..|.+.. ..||+-.. .++..+++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 345899999866554444443345999997653 77998544 455555554
No 360
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.97 E-value=33 Score=31.18 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+...|.+++..|+.|.+|-..|..+-
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e 28 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE 28 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998887654
No 361
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=74.60 E-value=14 Score=40.37 Aligned_cols=57 Identities=28% Similarity=0.306 Sum_probs=47.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQ 851 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qiq 851 (1102)
++++++...|.|+++.|..|++.|.. .-.-|+++|.+|..+|..-++.+.....|+|
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~---------------------~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRA---------------------INESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 67778889999999999999999998 7788888898888888877777766665553
No 362
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.47 E-value=1.3 Score=42.35 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=14.7
Q ss_pred EEeeccCCCCCccccCC
Q 001316 177 VFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm~G 193 (1102)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999863
No 363
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=74.29 E-value=1.7 Score=40.75 Aligned_cols=38 Identities=32% Similarity=0.804 Sum_probs=30.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~ 1096 (1102)
...|.+| +.-|-.+=.| +|..|++.-..|.+|...|..
T Consensus 44 ~~~C~~C----K~~v~q~g~~--YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKIC----KTKVHQPGAK--YCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred Ccccccc----ccccccCCCc--cChhhhcccCcccccCCeecc
Confidence 3479999 6666555555 599999999999999999854
No 364
>PRK10436 hypothetical protein; Provisional
Probab=74.16 E-value=1.7 Score=52.78 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+..++..-+|.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778999999999999999985
No 365
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.97 E-value=33 Score=36.80 Aligned_cols=64 Identities=27% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELAS-AAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAs-aa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.+++.+...|..++..|..+...+............ ....+-|...++++.|..+|.+|.++|.
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555555544444444333333 3556678889999999999999998875
No 366
>PF13245 AAA_19: Part of AAA domain
Probab=73.95 E-value=1.9 Score=39.17 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|...+. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 33444558999999999975
No 367
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.83 E-value=1.2e+02 Score=31.84 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 848 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~ 848 (1102)
.+.|+-+...|.+..+..+.++.+|.. .+...+--|....+++.-+..+...+..+|............
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~-------~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~ 112 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKK-------KIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLRE 112 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444 444445555555555555555555555555555444443333
No 368
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.50 E-value=4.2 Score=47.58 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCC-CCccccccccccccccceEEe
Q 001316 1025 EPLVARLKARMQEMKEKEQKYQGN-GDPNSHMCKVCFESPTAAILL 1069 (1102)
Q Consensus 1025 ~~~~~~l~~~l~e~k~~~~~~~~~-~~~~~~~C~IC~~~~~~~vl~ 1069 (1102)
....++..+...+.-......... ..++...|.-|+....++.|.
T Consensus 242 ~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 242 QTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred CCHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEE
Confidence 345666666555554444444434 445666899999999999885
No 369
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=73.37 E-value=1.2 Score=50.34 Aligned_cols=42 Identities=31% Similarity=0.775 Sum_probs=29.6
Q ss_pred ccccccccc----ccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1054 HMCKVCFES----PTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~----~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
..|+.|++. .++..-.|||-. +|..|.... ..||.||...+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 359999984 334444566666 899997654 559999987654
No 370
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.34 E-value=1.8 Score=53.86 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556777788999999999999999985
No 371
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=73.31 E-value=2.4 Score=51.30 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=32.5
Q ss_pred CcceeeceecCCCCChhHHHhhhhHHHHHHH--hcC--CceeEEeeccCCCCCccccC
Q 001316 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAA--MEG--VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 139 ~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~--l~G--~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...|+||.-+- +..+...|. .+..+.... ..| ||. +|-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cccccccceee-CCcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 34699998664 335555554 444444332 223 454 6789999999999885
No 372
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.21 E-value=3.1 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|-+.+||.||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678899999999999874
No 373
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.04 E-value=80 Score=35.31 Aligned_cols=72 Identities=25% Similarity=0.294 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.|.+.|.++...+.+++..|..+..+..++=..-..-...+..++..|.+++.+-..+..+|..++..++..
T Consensus 47 eea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 47 EEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444443222222333344455555555555555666666665555543
No 374
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=72.90 E-value=1.5e+02 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 808 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 808 Asaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
-+.+..|+.+|...+.+...++.-|+..|..+....
T Consensus 156 ~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn 191 (207)
T PF05010_consen 156 RSKHQAELLALQASLKKEEMKVQSLEESLEQKTKEN 191 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666777788888888888888887777655443
No 375
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.69 E-value=2.2 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778889999999999999985
No 376
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.63 E-value=2.9 Score=47.66 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=23.0
Q ss_pred HhhhhHHHHHHHhcC-CceeEEeeccCCCCCccccC
Q 001316 158 YDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 158 y~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+...+..++...+.| .---.+-||+.|+|||.|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333333444444544 44457889999999999974
No 377
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.56 E-value=89 Score=34.67 Aligned_cols=20 Identities=35% Similarity=0.921 Sum_probs=13.8
Q ss_pred ccchhhhhcC----CCCCCCcccc
Q 001316 1075 CLCKSCSLAC----SECPICRTKI 1094 (1102)
Q Consensus 1075 ~~C~~C~~~~----~~CPiCR~~i 1094 (1102)
=.|..|.... +.||+|.+.=
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred chhHhHHHHHhcCCCCCccccccc
Confidence 3677885543 6799998753
No 378
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.46 E-value=37 Score=31.17 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 758 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 758 ~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.++.|..++++-+-.|.=|+-+...|.+.|..|..+++.+.. .-..|..+|.+|.++-.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~---------------------~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH---------------------QREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHHHH
Confidence 445555666666666777777777777777777777777666 55556667777766643
No 379
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.38 E-value=56 Score=29.67 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++|+.++..+.+-...|..++..|.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 380
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=71.48 E-value=1e+02 Score=34.51 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 801 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~ 801 (1102)
.+|++|..+-..|.+++ ....+.|--|.|-|..-..|.+.|+....+|+-....|+.+++-++.=-
T Consensus 9 a~iae~k~e~sAlhqK~--------------~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~g 74 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKC--------------GAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACG 74 (389)
T ss_pred HHHHHHHHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 45666666666666655 1223455555555555566778888888888888888888888776522
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 802 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 802 ~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
..|+ ..-.+|-.+|.+-+.+...+|.+|..+-.+-.
T Consensus 75 c~a~---~e~gterqdLaa~i~etkeeNlkLrTd~eaL~ 110 (389)
T KOG4687|consen 75 CDAK---IEFGTERQDLAADIEETKEENLKLRTDREALL 110 (389)
T ss_pred CCch---hhccchhhHHHHHHHHHHHHhHhhhHHHHHHH
Confidence 2222 12234447788888888888988877644333
No 381
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=71.45 E-value=3.4 Score=48.55 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=29.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHH-Hhc--CC--ceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKA-AME--GV--NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~-~l~--G~--N~tIfaYGqTgSGKT~Tm 191 (1102)
.+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+++
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3556666655444445555444443321 222 21 335899999999999876
No 382
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.39 E-value=1.5e+02 Score=36.94 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHH
Q 001316 613 VEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRL 692 (1102)
Q Consensus 613 ~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l 692 (1102)
++--+++...........+.+..++. ...+...+.+++++++++.++...+.++.+-..
T Consensus 32 ~eAe~i~keA~~eAke~~ke~~~Eae---eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee------------------ 90 (514)
T TIGR03319 32 ELAKRIIEEAKKEAETLKKEALLEAK---EEVHKLRAELERELKERRNELQRLERRLLQREE------------------ 90 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred HHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHH
Q 001316 693 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETE 772 (1102)
Q Consensus 693 ~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E 772 (1102)
+|+++.-.|+.+..++...++.|..++.++.++..++..+.......++ +-+--......+.-+..+.
T Consensus 91 --~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le-~~a~lt~~eak~~l~~~~~--------- 158 (514)
T TIGR03319 91 --TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE-RISGLTQEEAKEILLEEVE--------- 158 (514)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH---------
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKN 817 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~ 817 (1102)
++++.+...+..+ .+.+.-.++-.+|+.+...|.--+..
T Consensus 159 -~~~~~~~~~~~~~-----~~~~~~~~a~~~a~~i~~~aiqr~a~ 197 (514)
T TIGR03319 159 -EEARHEAAKLIKE-----IEEEAKEEADKKAKEILATAIQRYAG 197 (514)
T ss_pred -HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccc
No 383
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.38 E-value=1.5e+02 Score=35.69 Aligned_cols=73 Identities=22% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
.|++.......++-.+.+.|++.....+. ..+.+.+...|++.| .+.++++|.+...++.
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~----------~kk~~e~k~~q~q~k----------~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEA----------EKKIVERKLQQLQTK----------LKKCQKELKEEREENK 406 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHH----------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 56666666666666666666554322211 112233333333322 3445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 001316 726 KLQEKVNLLEQQL 738 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql 738 (1102)
.|++..+..+.++
T Consensus 407 ~l~knq~vw~~kl 419 (493)
T KOG0804|consen 407 KLIKNQDVWRGKL 419 (493)
T ss_pred HHHhhHHHHHHHH
Confidence 5555555444444
No 384
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.33 E-value=26 Score=41.29 Aligned_cols=128 Identities=12% Similarity=0.212 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccchhhhhHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQ 687 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~-s~~~~~~~e~~~ 687 (1102)
+|..+...+.+...+.....-|+++..+-.+..++-..-=.-|+.++...-.+...+..++...... ........+++.
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~ 301 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTR 301 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444555555555666666655544332222111123333333333333333333221110 001112336667
Q ss_pred HHHHHHHHhhhhhhhHHHh------hHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 688 TVTRLMSQCNEKAFELEIK------SADNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 688 ~i~~l~~ql~ek~~el~~k------~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
+++++..+|++.-.+.+++ .+=+-.+++-|.....||..|.-.|.-++.
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVleh 356 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLEH 356 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheehh
Confidence 7777777777777777666 234445666666666666666555544443
No 385
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.26 E-value=2.5 Score=43.02 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
++..++.|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3455666766 7888999999999864
No 386
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.14 E-value=1.2e+02 Score=35.98 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s 672 (1102)
+.|+.+|..++..--|.|.+-++.|-+.
T Consensus 240 ~~~L~kl~~~i~~~lekI~sREk~iN~q 267 (359)
T PF10498_consen 240 KSQLDKLQQDISKTLEKIESREKYINNQ 267 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777777777777766443
No 387
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.97 E-value=3e+02 Score=35.12 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHH
Q 001316 644 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSE 723 (1102)
Q Consensus 644 ~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~e 723 (1102)
...+++.|++++++.+.+.+.+.+++.. ++..+.++...+++..-.++.. -..+.++....+.+
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~-------------l~~ele~a~~~l~~l~~~~~~~---GG~~~~~r~~Le~e 270 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAH-------------LRNELEEAQRSLESLEKKFRSE---GGDLFEEREQLERQ 270 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHH
Confidence 3456677777777777777766665532 2233333334444333333322 22344445566677
Q ss_pred HHHHHHHHHHHHHHH
Q 001316 724 NKKLQEKVNLLEQQL 738 (1102)
Q Consensus 724 i~~L~~ev~~Lk~ql 738 (1102)
+..++.++...+.++
T Consensus 271 i~~le~e~~e~~~~l 285 (650)
T TIGR03185 271 LKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777666
No 388
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.64 E-value=1.5 Score=42.75 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..+++.||.+|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3578999999999999864
No 389
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.33 E-value=2.1 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.1
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667778999999999984
No 390
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=70.21 E-value=3.6 Score=46.05 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=30.7
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
.|.|..+-.....+..+|.. +..++..+-.| ..++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~--~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERG--ENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccC--CcEEEECCCCCcHHHHHHH
Confidence 44443333334456667663 34455555533 3467799999999998764
No 391
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=70.07 E-value=4.2 Score=51.61 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=55.4
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCC---CCCCCchh----hHHHHHHHHhhc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQD 214 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~---~~~~GIip----r~~~~LF~~i~~ 214 (1102)
|....-|.|.-+|..-|.. +++.+-+|...- ..+|.|||||||||.+- ...|-||- .....|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557888888887764 455555664333 37899999999998652 12232221 234455555543
Q ss_pred C-CCceeEEEeehhhhhccee
Q 001316 215 T-PGREFLLRVSYLEIYNEVI 234 (1102)
Q Consensus 215 ~-~~~~~~v~vS~lEIYnE~i 234 (1102)
- ++..+...|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 2 4555788999999987654
No 392
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.80 E-value=3.8 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHhcCCceeEEeeccCCCCCccccC
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..+....+.++-+|++|+|||+.+.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344446678889999999998763
No 393
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.54 E-value=79 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+++|-+...+.++|..|-.+|..+..
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~ 163 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEA 163 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445444444444
No 394
>PRK09183 transposase/IS protein; Provisional
Probab=69.53 E-value=2.4 Score=47.54 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=26.5
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001316 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G 193 (1102)
||.-|.+..+...|..-....+ +-.|.| |+-||++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4444555555554443212122 234554 66799999999998753
No 395
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.42 E-value=2.6e+02 Score=33.66 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001316 651 LEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki 669 (1102)
|..++...+++++..+.++
T Consensus 176 l~~ql~~~~~~l~~ae~~l 194 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKL 194 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444554444444
No 396
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.41 E-value=2 Score=40.98 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999985
No 397
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.41 E-value=2.8 Score=49.50 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.3
Q ss_pred CceeEEeeccCCCCCccccC
Q 001316 173 VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999984
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.33 E-value=2.7 Score=49.09 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+..++.--.+.|+..|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344444345779999999999999985
No 399
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.10 E-value=2.1 Score=45.92 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+|.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999984
No 400
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=68.97 E-value=9.6 Score=36.35 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=32.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 001316 760 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 801 (1102)
Q Consensus 760 ~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~ 801 (1102)
.+|+.+|+==..|-+-+++....|.++|+.|..|+.++...+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444445667889999999999999999999998765
No 401
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=68.63 E-value=2 Score=46.65 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.3
Q ss_pred EEeeccCCCCCccccC
Q 001316 177 VFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm~ 192 (1102)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999985
No 402
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=68.60 E-value=1.8e+02 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 778 LEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELK 816 (1102)
Q Consensus 778 ~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk 816 (1102)
+....|..-..++...+..+....+-||-+|..|.....
T Consensus 46 r~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 46 RGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666677777777777777777655443
No 403
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.48 E-value=1.3e+02 Score=39.27 Aligned_cols=141 Identities=20% Similarity=0.165 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhh---HhHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKS---ADNRILQEQL----QNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDE 757 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~---a~~~~lqeqL----~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~ 757 (1102)
++.++.++..+|++|+-..+.+. +....++++. -..+.++..|+.|...|+..+...--.. ..-.++
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~------~kl~ee 545 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLA------AKLGEE 545 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHH------HHhhhH
Confidence 34555556666666655555443 3444455544 3445556666666666666662111100 011222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 758 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 758 ~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
+..-|+ -+..|+..++.+.-....|.+.+.+-.....++..+.--+|.. .+..+....++-.++.+-+.+-+.+
T Consensus 546 r~qklk-~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~---kv~l~~~~~~d~ekfr~~K~~~~Ke 619 (913)
T KOG0244|consen 546 RVQKLK-SLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQ---KVQLLRVMKEDAEKFRQWKDRTEKE 619 (913)
T ss_pred HHHHHH-HHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222222 2334555555555555566666555555555555544444432 3333444445555555555555554
No 404
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.23 E-value=52 Score=42.56 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=27.5
Q ss_pred HHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 617 KMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 617 k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
+.+...+-. ..+++..+++.+.-+=...|+..+..++.+.+.++..++++-
T Consensus 247 N~la~~Yi~--~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 247 NSIANNYLQ--QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444433 344444555544334445566666666666666666666653
No 405
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.17 E-value=1.5e+02 Score=30.38 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-.+.+.+.+....+++..|...+.+|+.++
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~ 82 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQL 82 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666555
No 406
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=68.11 E-value=2.7e+02 Score=33.38 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCC--------CChHHHHHHHHhhhhhHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQG--------TSDEYVDELRKKVQSQETENEKLKLEH 780 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~--------~~e~~~~el~~~~~~q~~E~e~lk~~~ 780 (1102)
+-..|+-||...-.||+..+..|..|+.-|. ....+++..+. ..-|-+-+.- -..|=.++
T Consensus 286 ar~kL~~ql~k~leEi~~~e~~I~~le~air---dK~~pLKVAqTRle~Rt~RPnvELCrD~A---------Q~~L~~EV 353 (421)
T KOG2685|consen 286 ARNKLEWQLAKTLEEIADAENNIEALERAIR---DKEGPLKVAQTRLENRTYRPNVELCRDQA---------QYRLVDEV 353 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---cccccHHHHHHHHHHcccCCchHHHHhHH---------HHHHHHHH
Confidence 4456777888888888888888888887771 10000000000 0001111111 02344455
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 781 VQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 781 ~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
.+|..-...|..++..... ....|-....+|+.+|+.+..++
T Consensus 354 ~~l~~t~~~L~~kL~eA~~---------------------~l~~L~~~~~rLe~di~~k~nsL 395 (421)
T KOG2685|consen 354 HELDDTVAALKEKLDEAED---------------------SLKLLVNHRARLERDIAIKANSL 395 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhcch
Confidence 5666666666666666666 77788888888999888776553
No 407
>PRK11519 tyrosine kinase; Provisional
Probab=68.08 E-value=88 Score=40.43 Aligned_cols=57 Identities=5% Similarity=0.127 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 610 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQR 668 (1102)
Q Consensus 610 d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qk 668 (1102)
++...=++.+.+++-... +.+..+++.+.-+=.+.|++.+..++.+.+..+...+++
T Consensus 240 ~~Aa~iaN~l~~~Yi~~~--~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 240 EQIRDILNSITRNYLEQN--IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555554433 333334443322233445555555555555555555443
No 408
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.81 E-value=37 Score=36.54 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
|+..+++|+...+.-...-+.+|+.|+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555665555555555555555554
No 409
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=67.74 E-value=3.1 Score=48.95 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.9
Q ss_pred CceeEEeeccCCCCCccccC
Q 001316 173 VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-++.|+..|+||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46899999999999999984
No 410
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=67.63 E-value=3.1 Score=44.52 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4455665555556668999999999874
No 411
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.29 E-value=1.7e+02 Score=30.88 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 001316 825 LSLQNAKLEKELLAARESMHSRG 847 (1102)
Q Consensus 825 L~~e~~~l~~el~a~k~~~~~we 847 (1102)
+..+.+.+..+++..|..+-.|.
T Consensus 136 i~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 136 IDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777776655553
No 412
>PF12846 AAA_10: AAA-like domain
Probab=67.14 E-value=2.3 Score=47.46 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.3
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999875
No 413
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.78 E-value=1.9e+02 Score=32.12 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
++|+.+...|..|+.....++..+......--. .++.+..+-++......++..||...|..+
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~-------iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLEN-------IIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444443322222 333333344444444444455555444443
No 414
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.77 E-value=33 Score=30.53 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
+..|..++..|..-..+|..||..|.. ++..+..+.++|-++...|+..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~---------------------q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRA---------------------QEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777 77777777777777777666553
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.70 E-value=3.6 Score=46.26 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 455555556778889999999999984
No 416
>PRK00106 hypothetical protein; Provisional
Probab=66.60 E-value=1.9e+02 Score=36.09 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHh
Q 001316 617 KMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQC 696 (1102)
Q Consensus 617 k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql 696 (1102)
++............+.+..++. ...+...+.+++++++...++...+.++.+-.. +|
T Consensus 57 ~I~keA~~EAke~~ke~~lEae---eEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE--------------------~L 113 (535)
T PRK00106 57 HIKKTAKRESKALKKELLLEAK---EEARKYREEIEQEFKSERQELKQIESRLTERAT--------------------SL 113 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HH
Q ss_pred hhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHH
Q 001316 697 NEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKL 776 (1102)
Q Consensus 697 ~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~l 776 (1102)
+++.-.|+.+..++...++.|..++.++..++++++.+.++....++ .-+--......+.-+..+. +++
T Consensus 114 ekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le-~~a~lt~~eak~~l~~~~~----------~~~ 182 (535)
T PRK00106 114 DRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE-RVAALSQAEAREIILAETE----------NKL 182 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH----------HHH
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 777 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKN 817 (1102)
Q Consensus 777 k~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~ 817 (1102)
+.+...+..+ .+.+--.++-.+|+.+...|..-+..
T Consensus 183 ~~~~~~~i~~-----~e~~a~~~a~~~a~~ii~~aiqr~a~ 218 (535)
T PRK00106 183 THEIATRIRE-----AEREVKDRSDKMAKDLLAQAMQRLAG 218 (535)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcc
No 417
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.51 E-value=9 Score=44.69 Aligned_cols=116 Identities=20% Similarity=0.346 Sum_probs=71.1
Q ss_pred CCEEEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecCC------------CCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001316 100 DSISVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNEY------------NPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1102)
Q Consensus 100 ~~I~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~~------------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1102)
..-+.+|++.++.+++ +..|..+....+...++..-. ...-.-+|+.|=|-+..-++|.+.+--||.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 4456788888887655 567777766655555442111 111234455665555555778777777776
Q ss_pred HH-Hhc--CCce--eEEeeccCCCCCcccc--------------CCCC---CCCCchhhHHHHHHHHhhcC
Q 001316 167 KA-AME--GVNG--TVFAYGVTSSGKTHTM--------------HGDQ---NSPGIIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 167 ~~-~l~--G~N~--tIfaYGqTgSGKT~Tm--------------~G~~---~~~GIipr~~~~LF~~i~~~ 215 (1102)
.- .|+ |+.- .|+-||+.|+|||-.- .|+. ..-|==+|.+++||....+.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 42 332 4443 5899999999998642 1211 11244579999999887654
No 418
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=66.48 E-value=3.6 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCccccCC
Q 001316 175 GTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G 193 (1102)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999998764
No 419
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.41 E-value=2.5e+02 Score=32.31 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHH
Q 001316 650 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 729 (1102)
Q Consensus 650 kL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ 729 (1102)
+...+|+-..+..+.|..-+--.+. -+.++|.....||+ +-.|+|..|.-.|..-.---.-|+.
T Consensus 28 ky~ediei~Kekn~~Lqk~lKLneE---------~ltkTi~qy~~QLn-------~L~aENt~L~SkLe~EKq~kerLEt 91 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLKLNEE---------TLTKTIFQYNGQLN-------VLKAENTMLNSKLEKEKQNKERLET 91 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHhhhHH-------HHHHHHHHHhHHHHHhHHHHHHHHH
Confidence 5666777777777777665522222 12334444444443 2345555555555333333444666
Q ss_pred HHHHHHHHHhhhc
Q 001316 730 KVNLLEQQLACQN 742 (1102)
Q Consensus 730 ev~~Lk~ql~~~~ 742 (1102)
||...+-.|+.|+
T Consensus 92 EiES~rsRLaaAi 104 (305)
T PF14915_consen 92 EIESYRSRLAAAI 104 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665564333
No 420
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.29 E-value=80 Score=34.46 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 001316 821 EVTKLSLQNAKLEK 834 (1102)
Q Consensus 821 ev~kL~~e~~~l~~ 834 (1102)
+|.+|...-..|+.
T Consensus 192 ev~~L~~r~~ELe~ 205 (290)
T COG4026 192 EVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHhcc
Confidence 44444444444433
No 421
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.12 E-value=4.4 Score=45.33 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=25.6
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 162 ~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++++.+.--.-|.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566677777777889999999999999984
No 422
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=65.32 E-value=2.2 Score=35.50 Aligned_cols=38 Identities=29% Similarity=0.695 Sum_probs=15.8
Q ss_pred cccccccc--cceEEe--CCCCcccchhhhhcC-----CCCCCCcccc
Q 001316 1056 CKVCFESP--TAAILL--PCRHFCLCKSCSLAC-----SECPICRTKI 1094 (1102)
Q Consensus 1056 C~IC~~~~--~~~vl~--pCgH~~~C~~C~~~~-----~~CPiCR~~i 1094 (1102)
|++|.+.. ++.-|. +||+. +|..|.... ..||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 55565532 333344 57887 899995543 4599999874
No 423
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.23 E-value=68 Score=33.50 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+++......|.++...|...++.|..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666666666666666655
No 424
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.87 E-value=2.1 Score=49.85 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=4.1
Q ss_pred EEeecCCCC
Q 001316 321 NLIDLAGSE 329 (1102)
Q Consensus 321 ~lVDLAGSE 329 (1102)
+||||+|--
T Consensus 240 tLIDLCGaT 248 (416)
T PF04710_consen 240 TLIDLCGAT 248 (416)
T ss_dssp -EEE-SSSE
T ss_pred cChhhceee
Confidence 466666643
No 425
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=64.73 E-value=63 Score=41.12 Aligned_cols=118 Identities=20% Similarity=0.237 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccccchhhhhHHHH
Q 001316 611 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI-IENGEASMANASMVDMQQTV 689 (1102)
Q Consensus 611 ~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki-~~s~~~s~~~~~~~e~~~~i 689 (1102)
.|+.|++++.... ..|+-+-|+--++-++++...++|...+.+|+.++-...+.. .+.. -+..++
T Consensus 438 ~Lq~ql~es~k~~----e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~----------rik~ev 503 (861)
T PF15254_consen 438 SLQNQLQESLKSQ----ELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETT----------RIKIEV 503 (861)
T ss_pred HHHHHHHHHHHhH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----------HHHHHH
Confidence 4667777665443 445555666666667788888999999999999886655533 1111 122333
Q ss_pred HHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhc
Q 001316 690 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQN 742 (1102)
Q Consensus 690 ~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~ 742 (1102)
.+...++.-.-|.|+.-..+|.+|.--|+..++||.-|++=.-.|+.-+++++
T Consensus 504 ~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 504 EEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333443344445555559999999999999999999887777776654444
No 426
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.37 E-value=7.2 Score=38.87 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=14.9
Q ss_pred CCccccccccccccccceEEeCCCCcc
Q 001316 1049 GDPNSHMCKVCFESPTAAILLPCRHFC 1075 (1102)
Q Consensus 1049 ~~~~~~~C~IC~~~~~~~vl~pCgH~~ 1075 (1102)
+......|.||.... .---|||.|
T Consensus 61 Gv~ddatC~IC~KTK---FADG~GH~C 84 (169)
T KOG3799|consen 61 GVGDDATCGICHKTK---FADGCGHNC 84 (169)
T ss_pred ccCcCcchhhhhhcc---cccccCccc
Confidence 344556899996432 113699984
No 427
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.91 E-value=1.7e+02 Score=34.12 Aligned_cols=123 Identities=20% Similarity=0.143 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLE-------QQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQ 782 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk-------~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~ 782 (1102)
-.+|+..|.-.++++++||++-++|= ++|.-+|... .. ....++++.|-.. -..-.+++-|.++.
T Consensus 489 hdhlkselhllesrneelqkerdrlfvdnslvkrkleiamada--ql---dapapdmdqiwsi---~mek~dd~lq~~q~ 560 (637)
T KOG4421|consen 489 HDHLKSELHLLESRNEELQKERDRLFVDNSLVKRKLEIAMADA--QL---DAPAPDMDQIWSI---FMEKFDDLLQLKQQ 560 (637)
T ss_pred HHHHhhhHHHhhhhhHHHHhhhhhhhhhhHHHHHHHHHhhhhh--hc---cCCCccHHHHHHH---HHHHHHHHHHHHHH
Confidence 34678888899999999999988873 3442222211 00 1112233332100 01123444444444
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 783 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 783 L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
-+...+--+.|.+.|.. --.++..+||+--++++-+..++.+|+++|...|.- ++.||
T Consensus 561 aekalrfyeiefe~ll~-------~e~aaee~lk~~~del~s~~~~~h~ledeles~r~g---ye~qi 618 (637)
T KOG4421|consen 561 AEKALRFYEIEFEHLLN-------CEEAAEEELKAKDDELASLGGALHMLEDELESTRIG---YEEQI 618 (637)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHhhh---HHHHH
Confidence 43333334444444433 445678899999999999999999999999987743 55555
No 428
>PRK01156 chromosome segregation protein; Provisional
Probab=62.82 E-value=4.9e+02 Score=34.52 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=8.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 001316 815 LKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~e 835 (1102)
+..|.+++..|..+...+...
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~ 438 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALREN 438 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 429
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=62.75 E-value=4.3e+02 Score=33.82 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHhhch---HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 607 DQMDLLVEQVKMLAGEIAFSS---SNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~---s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
|.+..|+.|+..|-.+++-.. +.|.+--+.-++-.+=++.+.+.|..++....+...-+.++.
T Consensus 331 ~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~ 396 (739)
T PF07111_consen 331 DSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQT 396 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777776666544 222222221112122223344456666666666666666666
No 430
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.64 E-value=2.8e+02 Score=32.43 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 726 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~ 726 (1102)
.-|+|-.+-..+.-|-.+|..-+.. -+-...+|..+|. .++|.++.++.......=++..
T Consensus 16 kyqklaqeysklraqakvlke~vie-------------e~gk~~kl~eelk-------~k~a~irrieaendsl~frndq 75 (637)
T KOG4421|consen 16 KYQKLAQEYSKLRAQAKVLKEAVIE-------------EQGKEAKLREELK-------QKAASIRRIEAENDSLGFRNDQ 75 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcchhHHHHHHH-------HHHHHHHHHHHhccccccchHH
Confidence 4455666655555555555443322 1222344444443 4466666666665555666666
Q ss_pred HHHHHHHHHHHHhhhccCCcCCCC----------CCCCChHHHHHHHHh----------hhhhHHHHHHHHHHHHHhHHH
Q 001316 727 LQEKVNLLEQQLACQNGDKSAGSS----------GQGTSDEYVDELRKK----------VQSQETENEKLKLEHVQLSEE 786 (1102)
Q Consensus 727 L~~ev~~Lk~ql~~~~~~~~~~~~----------~~~~~e~~~~el~~~----------~~~q~~E~e~lk~~~~~L~ee 786 (1102)
|...|..++..+..--..++.-+. +.+.....|+.+.+. |--.++|.+ +|-....-+-
T Consensus 76 l~rrvenfqfe~pt~~aa~k~~~~k~~~~~tqsdsaaaaaarid~~ee~l~~~~aq~erlvgeiaene--rqhavemael 153 (637)
T KOG4421|consen 76 LERRVENFQFEIPTHEAAKKKDKDKGGRRGTQSDSAAAAAARIDAAEEALIFEEAQKERLVGEIAENE--RQHAVEMAEL 153 (637)
T ss_pred HHHHHHHhccCCCCCccccccccccCCCCCCCCCcccccccccchHHHHHHHHHHHhhHHHHHHHhhh--HhhHHHHHHH
Confidence 666666665433110011111111 111222333333222 222233332 3333444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001316 787 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL 832 (1102)
Q Consensus 787 ~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l 832 (1102)
-.+|..++.+|..+.....-...+|+|-.|-|+++++|+...+..+
T Consensus 154 sekia~emr~lede~~r~~mrtkaaavatkpledelekieekkeel 199 (637)
T KOG4421|consen 154 SEKIADEMRDLEDETERIAMRTKAAAVATKPLEDELEKIEEKKEEL 199 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchhHHHHHHHHHHHH
Confidence 5567778888888887777788889999999999999987777665
No 431
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.52 E-value=2.2e+02 Score=30.45 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhh--hccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQLAC--QNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql~~--~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+.+..++..+..|+.+++. .++..........+....++++-.+ .++=++....|.+-|..|..+++.+..
T Consensus 23 ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~r-------LeEEqqR~~~L~qvN~lLReQLEq~~~ 95 (182)
T PF15035_consen 23 AKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIR-------LEEEQQRSEELAQVNALLREQLEQARK 95 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555521 1222222211122333455544322 344556667777777777766666655
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 800 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 800 e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
.-.+|.+++.+|..+-.++.++|..+.
T Consensus 96 --------------~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 96 --------------ANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667799999999999998888544
No 432
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=62.33 E-value=0.96 Score=41.50 Aligned_cols=37 Identities=27% Similarity=0.857 Sum_probs=33.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~ 1096 (1102)
..|.|| +..|--|-.|+ |..|+..-..|.+|.+.|..
T Consensus 55 ~kC~iC----k~~vHQ~GshY--C~tCAY~KgiCAMCGKki~n 91 (100)
T KOG3476|consen 55 AKCRIC----KQLVHQPGSHY--CQTCAYKKGICAMCGKKILN 91 (100)
T ss_pred chhHHH----HHHhcCCcchh--HhHhhhhhhHHHHhhhHhhc
Confidence 489999 88888898896 99999999999999998865
No 433
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.19 E-value=2.5e+02 Score=31.04 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHH
Q 001316 613 VEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRL 692 (1102)
Q Consensus 613 ~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l 692 (1102)
-+-.+||...+-+..+.|..+....+. .......+++++.+...++..++.+-..+...... ....++=..+..|
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~----~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E-~LAr~al~~~~~l 97 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQ----AIARQKQLERKLEEAQARAEKLEEKAELALQAGNE-DLAREALEEKQSL 97 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHH
Confidence 334456666666666666555544433 22344568888888888888888888555443321 1222455566667
Q ss_pred HHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 693 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 693 ~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.++..+.-.+..-......|+.++...+..|.+++.+...++...
T Consensus 98 e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 98 EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788777777777777888888888888888888888887777544
No 434
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.14 E-value=44 Score=40.44 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=27.0
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+.++.++.+++....++..|.+|..+|+++.
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888889999999999999999998755
No 435
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.09 E-value=97 Score=33.96 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 001316 725 KKLQEKVNLLEQQL 738 (1102)
Q Consensus 725 ~~L~~ev~~Lk~ql 738 (1102)
+...++...++.++
T Consensus 130 ~~~~~~~~~lk~~~ 143 (216)
T KOG1962|consen 130 EKAMKENEALKKQL 143 (216)
T ss_pred HHHHHHHHHHHHhh
Confidence 44555666666665
No 436
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.08 E-value=1.1e+02 Score=34.62 Aligned_cols=25 Identities=12% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQ 737 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~q 737 (1102)
.+++|++.+.||.+|+..+.+.++.
T Consensus 80 s~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 80 SENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555544
No 437
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.07 E-value=2.4e+02 Score=30.66 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 806 ELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 806 ~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
+||-.|..+...+...+..+..+...+...
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~ 113 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQ 113 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 438
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.04 E-value=60 Score=33.95 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
..|+..+.+.+.+|..|+..+..|+.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555556665555553
No 439
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=61.82 E-value=4.9 Score=39.63 Aligned_cols=65 Identities=20% Similarity=0.526 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001316 1027 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1092 (1102)
Q Consensus 1027 ~~~~l~~~l~e~k~~~~~~~~~~~~~~~~C~IC~~~~-----~~~vl~pCgH~~~C~~C~~~~~-----~CPiCR~ 1092 (1102)
.+.+|+.+|+....+..........+.+.|.+|.... ...+..-|+|. +|..|..... .|.+|..
T Consensus 28 Ri~kLk~~L~~e~~r~~~~~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 28 RIRKLKQELQKEKMRREALGNSQKYGERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSTTHCCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 4556666663322221111111222566899997753 34555667776 7777754431 2777765
No 440
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.81 E-value=2.6e+02 Score=31.10 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.+|..++..|..+...|+..+.++..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444
No 441
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.20 E-value=1.2e+02 Score=27.18 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=8.3
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 001316 718 QNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 718 ~~~e~ei~~L~~ev~~Lk~ 736 (1102)
+.+..-|.-||-||..||+
T Consensus 14 qqAvdTI~LLQmEieELKE 32 (79)
T COG3074 14 QQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 442
>PHA00729 NTP-binding motif containing protein
Probab=60.95 E-value=6.3 Score=43.40 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=24.2
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+++.++..+..|--..|+.+|.+|+||||...
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 35566666665444689999999999999765
No 443
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=60.78 E-value=9 Score=36.37 Aligned_cols=30 Identities=30% Similarity=0.673 Sum_probs=23.2
Q ss_pred cccccccccccc--cceEEeCCCCcccchhhhh
Q 001316 1052 NSHMCKVCFESP--TAAILLPCRHFCLCKSCSL 1082 (1102)
Q Consensus 1052 ~~~~C~IC~~~~--~~~vl~pCgH~~~C~~C~~ 1082 (1102)
....|.+|...- ...++.||||. +...|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 456899998844 55667899998 7888864
No 444
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=60.74 E-value=5.1 Score=45.95 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.6
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++..++.+ .+.|+..|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555553 4567889999999999874
No 445
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=60.74 E-value=1.7e+02 Score=33.82 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++...+++|+...+.....+..+..+.++.
T Consensus 142 ~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~ 171 (301)
T PF06120_consen 142 ELAVAQERLEQMQSKASETQATLNDLTEQR 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555544
No 446
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=60.69 E-value=4.1 Score=43.44 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+...+..|.+..++-||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444445668899999999999998763
No 447
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.68 E-value=3.2e+02 Score=31.67 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001316 818 LAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 818 l~eev~kL~~e~~~l~~el~ 837 (1102)
|-..+++|..++..|..+|.
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33466666666766666665
No 448
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=60.64 E-value=1.4e+02 Score=27.61 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=45.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 792 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~ 792 (1102)
+.|.|...-.|...+-.++..++.+- +++..++.+|+.|++..++.+..|+....++..
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~---------------------~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQK---------------------DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776533 456667889999999999999999888776654
Q ss_pred H
Q 001316 793 Q 793 (1102)
Q Consensus 793 e 793 (1102)
.
T Consensus 61 ~ 61 (79)
T PF08581_consen 61 Q 61 (79)
T ss_dssp H
T ss_pred H
Confidence 3
No 449
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.60 E-value=5.5 Score=46.88 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=27.6
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 151 ~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..|..+|+.+...+.. .+| ..+|..|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence 35688999877665433 344 56788999999999986
No 450
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.35 E-value=3.8 Score=52.06 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=23.2
Q ss_pred CccCCCCcchhhhhccCCCCccceEEEeeCCC
Q 001316 367 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 398 (1102)
Q Consensus 367 hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~ 398 (1102)
.-+|+|-.|-.+|-+..+|..-|++=.+.+.+
T Consensus 892 ~~f~yd~vl~e~l~~~IdgkmpvlfkknLsSa 923 (1525)
T COG5219 892 TNFFYDLVLNECLYKNIDGKMPVLFKKNLSSA 923 (1525)
T ss_pred ehhHHHHHHHHHHHhccCcccchhhhhhhhhh
Confidence 34677777888888888888777776666543
No 451
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=60.19 E-value=50 Score=38.70 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=41.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
..|+.++.....++..|..+.+........|..|-+.-..|-.-+.+.+..+..+...+-..
T Consensus 252 ~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 252 AALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 33444444455556666666666666666677777777777777777788877777777666
No 452
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=60.06 E-value=6 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.8
Q ss_pred cCC-ceeEEeeccCCCCCccccC
Q 001316 171 EGV-NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~-N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|- ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3566669999999999874
No 453
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=59.83 E-value=3.9e+02 Score=32.36 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=37.7
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+..+++|.-+++..-++|..++|.|.....+++.+++...-.|..++
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~ 353 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAG 353 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 35566666666667788999999999999999999988888777666
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.51 E-value=3.6 Score=39.84 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEeeccCCCCCcccc
Q 001316 177 VFAYGVTSSGKTHTM 191 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1102)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999875
No 455
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.33 E-value=4.9e+02 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=24.7
Q ss_pred HHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 628 SNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 628 s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
...+++.|+| ..-+++|..+|.+.+.++..|...+
T Consensus 50 ~~y~~kve~a-------~~~~~~L~~~ia~~eael~~l~s~l 84 (660)
T KOG4302|consen 50 EIYKRKVEEA-------SESKARLLQEIAVIEAELNDLCSAL 84 (660)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666 4456678888888888888877777
No 456
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.27 E-value=3.7 Score=44.12 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.9
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47789999999999974
No 457
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.24 E-value=11 Score=41.97 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=47.6
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHh---cCCc--eeEEeeccCCCCCccccC--------------CCC---CCCC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM---EGVN--GTVFAYGVTSSGKTHTMH--------------GDQ---NSPG 199 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l---~G~N--~tIfaYGqTgSGKT~Tm~--------------G~~---~~~G 199 (1102)
..|-.|=+-+..-++|-+.+--|+...-+ =|+. -.|+.||+.|+|||...- |+. ..-|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44455555555566677766666665444 1333 258999999999975431 211 1236
Q ss_pred chhhHHHHHHHHhhcC
Q 001316 200 IIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1102)
=-||.++|+|....+.
T Consensus 232 egprmvrdvfrlaken 247 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKEN 247 (408)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 6799999999987654
No 458
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=3.7 Score=45.43 Aligned_cols=44 Identities=25% Similarity=0.638 Sum_probs=32.4
Q ss_pred ccccccccccccc----------ceEEeCCCCcccchhhhhcC------CCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPT----------AAILLPCRHFCLCKSCSLAC------SECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~----------~~vl~pCgH~~~C~~C~~~~------~~CPiCR~~i~~ 1096 (1102)
+...|.||-.+-- ++.-+.|+|. |=+.|...- +.||.|...|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4568999976433 3345799998 888896542 669999998864
No 459
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.98 E-value=37 Score=43.03 Aligned_cols=7 Identities=43% Similarity=0.842 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 001316 498 RLTKLIL 504 (1102)
Q Consensus 498 ~l~~l~l 504 (1102)
.|.+|+|
T Consensus 819 ~lLeLvL 825 (1102)
T KOG1924|consen 819 KLLELVL 825 (1102)
T ss_pred HHHHHHH
Confidence 3444443
No 460
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.94 E-value=6.7 Score=44.96 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=26.3
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.||.+++ ++++... +...+-.|....++-||++|+|||+++.
T Consensus 12 ~~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 12 ALLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CcHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHH
Confidence 45777765 3343332 2222223443458889999999999874
No 461
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=58.76 E-value=11 Score=48.55 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=36.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHh-hcCCCceeEEEeehhhhhc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII-QDTPGREFLLRVSYLEIYN 231 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i-~~~~~~~~~v~vS~lEIYn 231 (1102)
.+..+.+|.|+.|+| +||||||-+-| +| ++..|+..- ....+.-+.|+||=+---|
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 345678999999887 99999998843 44 555555542 1122346677777655443
No 462
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.74 E-value=2e+02 Score=34.40 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 801 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~ 801 (1102)
+.+|.+-++..+...+-+.+.|..|+..+.++-
T Consensus 39 ~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 39 LRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666666666543
No 463
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=58.21 E-value=1.2e+02 Score=27.28 Aligned_cols=17 Identities=47% Similarity=0.470 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 821 EVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 821 ev~kL~~e~~~l~~el~ 837 (1102)
+..+|+.++..|.++|.
T Consensus 48 e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 48 ENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666655
No 464
>PF14992 TMCO5: TMCO5 family
Probab=58.12 E-value=3.2e+02 Score=31.26 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001316 648 IQNLEREIQEKRRQMRILEQRIIENGE 674 (1102)
Q Consensus 648 ~qkL~~el~dk~eei~~l~qki~~s~~ 674 (1102)
.+.|-+.|.++++.|..|+.-|.....
T Consensus 20 Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 20 NQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345667777777777777777755544
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=57.88 E-value=5.5 Score=46.13 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=19.8
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++..++.+ ...|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555554 3566777999999997764
No 466
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=57.82 E-value=4.3e+02 Score=32.22 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc--ccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHH----
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENG--EA--SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQL---- 717 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~--~~--s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL---- 717 (1102)
.|+.-.+.|+...++.+....+.+.... .+ .|.. ...-..+.|+.|+.||-+...+|. .|+..+
T Consensus 242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~-~a~~~~~lI~~Le~qLa~~~aeL~-------~L~~~~~p~s 313 (434)
T PRK15178 242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKE-TITAIYQLIAGFETQLAEAKAEYA-------QLMVNGLDQN 313 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHH-HHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcCCCC
Confidence 3444444555555555555444442221 11 2221 111234566677777766655554 343333
Q ss_pred ---HhhhHHHHHHHHHHHHHHHHH
Q 001316 718 ---QNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 718 ---~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.....+|..|+.+|+..+.++
T Consensus 314 PqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 314 PLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555555444
No 467
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=57.63 E-value=5.7 Score=42.27 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=16.5
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444443333 45668999999999875
No 468
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.38 E-value=2.8e+02 Score=30.05 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=19.1
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
......++.++...+.++..|+-+-..|.++.
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666555
No 469
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=57.11 E-value=19 Score=40.06 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=32.8
Q ss_pred EeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC
Q 001316 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 263 ~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1102)
.+.+++++...+...... ..+. + ..-|.-++.|.|..... -.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~~---------~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPHV---------LNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCCC---------CceEEEeCCCccc
Confidence 345788888888765432 2111 1 23455677777765432 2489999999864
No 470
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=56.98 E-value=3.7 Score=38.18 Aligned_cols=33 Identities=27% Similarity=0.903 Sum_probs=27.1
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRT 1092 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCR~ 1092 (1102)
+|+|| +..+-||.-+-+|+.|++.. ..|.||..
T Consensus 29 kC~IC-----DS~VRP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 29 KCVIC-----DSYVRPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred ccccc-----ccccccceeeeeehhcCCccccCceEEecC
Confidence 79999 55567999999999998765 55999986
No 471
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.83 E-value=4.6e+02 Score=32.30 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 001316 814 ELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~e 835 (1102)
+-..|.+++..|+..|.++..+
T Consensus 166 ~~~~L~~qi~~L~~~n~~i~~e 187 (475)
T PRK10361 166 ERHTLAHEIRNLQQLNAQMAQE 187 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777666
No 472
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=56.35 E-value=4.4e+02 Score=31.97 Aligned_cols=35 Identities=6% Similarity=0.136 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 808 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 808 Asaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.+.-.....+|.|+-..|-....++-+-+...|..
T Consensus 339 haR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKka 373 (488)
T PF06548_consen 339 HARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKA 373 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555444444433
No 473
>PF13479 AAA_24: AAA domain
Probab=56.28 E-value=5.4 Score=43.26 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.8
Q ss_pred ceeEEeeccCCCCCccccCC
Q 001316 174 NGTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G 193 (1102)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998754
No 474
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=55.99 E-value=7.9 Score=39.49 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..++.+. ..++..|+||||||+++.
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHH
Confidence 34444442 345677999999999875
No 475
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.99 E-value=9.9 Score=45.25 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999974
No 476
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=55.82 E-value=4.3 Score=33.49 Aligned_cols=43 Identities=28% Similarity=0.749 Sum_probs=24.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceee
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLF 1099 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~ 1099 (1102)
-|.-|.-..++.| -|.--.+|-.|-..| ..||+|..++...|+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 5889988888877 577556999997766 459999998876653
No 477
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.74 E-value=2.3e+02 Score=31.52 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=41.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 791 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~ 791 (1102)
..|++.+....+...|..++..|+.++ ..-+.|...+...+..|..++++|+++...+..-...|.
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~--------------e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREI--------------ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555444 011124445555556666677777777777777766666
Q ss_pred HHHHHHHH
Q 001316 792 VQNQKLAE 799 (1102)
Q Consensus 792 ~e~~kl~~ 799 (1102)
--+..+..
T Consensus 105 p~m~~m~~ 112 (251)
T PF11932_consen 105 PLMEQMID 112 (251)
T ss_pred HHHHHHHH
Confidence 66666655
No 478
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=55.73 E-value=4.5 Score=53.23 Aligned_cols=44 Identities=36% Similarity=0.869 Sum_probs=32.8
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhhh--------------cCCCCCCCcccccce
Q 001316 1053 SHMCKVCFESP---TAAILLPCRHFCLCKSCSL--------------ACSECPICRTKISDR 1097 (1102)
Q Consensus 1053 ~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~--------------~~~~CPiCR~~i~~~ 1097 (1102)
+..|+||+.+. ..++-+-|+|. |=-.|-. .+-.||+|..+|...
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 45899999865 45677899999 7777732 234599999998764
No 479
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.61 E-value=4.8e+02 Score=32.10 Aligned_cols=182 Identities=20% Similarity=0.159 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 726 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~ 726 (1102)
|+|.+.++-+-.+++++-|.-. .....++|+.... ..-.....|+.+..+...+ +.-.+..+-...++......+
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~-~s~VegS~S~~~l-~~ek~r~~lee~~~~e~~e---~rk~v~k~~~l~q~~~~~~~e 306 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQ-LSDVEGSWSGQNL-ALEKQRSRLEEQVAEETTE---KRKAVKKRDDLIQSRKQVSFE 306 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999888664 3444455553222 3344445454444442222 222333333333333333444
Q ss_pred HHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhh---h---hhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 001316 727 LQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV---Q---SQETENEKLKLEHVQLSEENSGLHVQNQKLAEE 800 (1102)
Q Consensus 727 L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~---~---~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e 800 (1102)
|+ +..++-.+- .++..--++..++|.--+ + .-.+++.-++++.+.+.-++..+..-+-.+..+
T Consensus 307 L~-K~kde~~~n----------~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr 375 (613)
T KOG0992|consen 307 LE-KAKDEIKQN----------DDKVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADDR 375 (613)
T ss_pred HH-HHHHHHhcc----------chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 43 221111111 000001111222221000 0 112344556667777777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 801 ASYAKELASAAAVELKN-LAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 801 ~~~ak~lAsaa~~elk~-l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
.+...+++.+++.+++. +...-.|+..-.-.|..||..+|..+.
T Consensus 376 ~se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~ 420 (613)
T KOG0992|consen 376 FSEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAIL 420 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999987777753 455555566666666667766665543
No 480
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.59 E-value=1.4e+02 Score=34.99 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch---hhhhHHHHHHHHHHhhhhhhhHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGEASMANAS---MVDMQQTVTRLMSQCNEKAFELE 704 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~---~~e~~~~i~~l~~ql~ek~~el~ 704 (1102)
..+=++.++...+.++...++++........-... .....+.+++|+.++.+...+|.
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666433332111100 11233456666666666555544
No 481
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.38 E-value=8 Score=41.98 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=13.9
Q ss_pred CceeEEeeccCCCCCcccc
Q 001316 173 VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999874
No 482
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=55.18 E-value=7.4e+02 Score=34.18 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=12.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhHH
Q 001316 681 SMVDMQQTVTRLMSQCNEKAFELE 704 (1102)
Q Consensus 681 ~~~e~~~~i~~l~~ql~ek~~el~ 704 (1102)
...|.+++..++...+.+..-+++
T Consensus 820 t~~E~~~Ek~~~~~~~~~~rke~E 843 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDKLRKEIE 843 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666665555544444443333
No 483
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=55.12 E-value=60 Score=39.10 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAA 849 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~q 849 (1102)
+.|+.+|.+....-.|..+++..|+.++.++.-+|..--++--+.||+-...|+-++.++.+++.++. -.|.|
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~-------~~E~~ 99 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCE-------KLETQ 99 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHH-------HHHHH
Confidence 34577888888888899999999999999988888888888889999999999999999988888765 34556
Q ss_pred hhhhcc
Q 001316 850 MQTVNG 855 (1102)
Q Consensus 850 iqwv~d 855 (1102)
||.|-|
T Consensus 100 i~~i~d 105 (604)
T KOG3564|consen 100 IQLIKD 105 (604)
T ss_pred HHHHHH
Confidence 665544
No 484
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.08 E-value=90 Score=37.94 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAA-VELKNLAGEVTKLSLQNAKLEKEL 836 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~-~elk~l~eev~kL~~e~~~l~~el 836 (1102)
+.+..+++.+...|..+|+.|..||+.|...-..-....+.|. .+-..+..+.+.|..+.+++...|
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888664444333333332 333444444444444444444443
No 485
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=55.02 E-value=3.1 Score=47.51 Aligned_cols=44 Identities=30% Similarity=0.647 Sum_probs=33.7
Q ss_pred ccccccccccceE-EeCCCCcccchhhhh----cCCCCCCCcccccceee
Q 001316 1055 MCKVCFESPTAAI-LLPCRHFCLCKSCSL----ACSECPICRTKISDRLF 1099 (1102)
Q Consensus 1055 ~C~IC~~~~~~~v-l~pCgH~~~C~~C~~----~~~~CPiCR~~i~~~i~ 1099 (1102)
.|.+|..=..++. +.-|-|- ||..|.. .+..||.|...|.+..+
T Consensus 17 tC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 17 TCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCccc
Confidence 7999977555543 3579999 9999943 35779999999988754
No 486
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.88 E-value=5.7e+02 Score=32.75 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=71.8
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHH
Q 001316 708 ADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN 787 (1102)
Q Consensus 708 a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~ 787 (1102)
...+.+-+.|......++-+..++.+|.+.+ .+... ...-|...+-++-.+++.|+.-+..+.+.+
T Consensus 384 tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~-----------~~~~~---~~krl~~~l~~~tk~reqlk~lV~~~~k~~ 449 (716)
T KOG4593|consen 384 TKLKELHETLARRLQKRALLLTQERDLNRAI-----------LGSKD---DEKRLAEELPQVTKEREQLKGLVQKVDKHS 449 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccc---hHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555566555555655555555555444 11111 112233334455667888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 788 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 788 ~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
-..+.-+..+..+....+........++|+|...+....+.+.....+
T Consensus 450 ~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e 497 (716)
T KOG4593|consen 450 LEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREE 497 (716)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888887777766665555555444443
No 487
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=54.83 E-value=5.2 Score=38.55 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 488
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=54.60 E-value=3.7 Score=45.67 Aligned_cols=125 Identities=17% Similarity=0.255 Sum_probs=67.5
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce-eEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCce
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG-TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGRE 219 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~-tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~ 219 (1102)
...+|...+-+...+.+.+.+ ..++.|..+ -++-||..|+|||.++- .++.......
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~G--- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQG--- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhcC---
Confidence 355677766555545554433 567777765 36779999999988763 2333332222
Q ss_pred eEEEeehhhhhcceeeec------CCCCCCcceEEeCCCCcEeeCceEEEeC-ChHHHHHHHHHHhhhcccCCCccccCC
Q 001316 220 FLLRVSYLEIYNEVINDL------LDPTGQNLRVREDAQGTYVEGIKEEVVL-SPGHALSFIAAGEEHRHVGSNNFNLLS 292 (1102)
Q Consensus 220 ~~v~vS~lEIYnE~i~DL------L~~~~~~l~ire~~~g~~v~gl~e~~V~-s~~e~~~ll~~g~~~R~~~~t~~N~~S 292 (1102)
+-.+||..+.+.|| |...+...- +|+.+|+--.-. +...+..+|.-|...| ....-+.++|
T Consensus 81 ----LRlIev~k~~L~~l~~l~~~l~~~~~kFI-------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATS 148 (249)
T PF05673_consen 81 ----LRLIEVSKEDLGDLPELLDLLRDRPYKFI-------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATS 148 (249)
T ss_pred ----ceEEEECHHHhccHHHHHHHHhcCCCCEE-------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEec
Confidence 33456665555444 222221111 244444422211 2445556665555443 5566677788
Q ss_pred CCceeEE
Q 001316 293 SRSHTIF 299 (1102)
Q Consensus 293 SRSH~If 299 (1102)
.|-|.|=
T Consensus 149 NRRHLv~ 155 (249)
T PF05673_consen 149 NRRHLVP 155 (249)
T ss_pred chhhccc
Confidence 8888774
No 489
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=54.51 E-value=3 Score=45.29 Aligned_cols=38 Identities=29% Similarity=0.760 Sum_probs=26.3
Q ss_pred cccc--ccccccceEEeC-CCCcccchhhhhcC-----CCCC--CCccc
Q 001316 1055 MCKV--CFESPTAAILLP-CRHFCLCKSCSLAC-----SECP--ICRTK 1093 (1102)
Q Consensus 1055 ~C~I--C~~~~~~~vl~p-CgH~~~C~~C~~~~-----~~CP--iCR~~ 1093 (1102)
.|.. -+....-.++-| |.|. +|+.|..+. ..|| .|.+-
T Consensus 15 vCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 15 VCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred ccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4554 333445566668 9999 999997654 5699 88763
No 490
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=54.14 E-value=1e+02 Score=35.51 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=63.7
Q ss_pred CCchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccc
Q 001316 604 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-----SMA 678 (1102)
Q Consensus 604 ~~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~-----s~~ 678 (1102)
.+.-|+|+|++.+-++-..+++..-.+..+.-+- +-+|.....|..++.++.+++.....-|...|.- ..+
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el----Er~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ng 184 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIREL----ERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNG 184 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCC
Confidence 4456778887777777777666554443332222 2244445567777777777766655555322220 000
Q ss_pred ----------cchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 679 ----------NASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 679 ----------~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
......++++-+.+-..-. .-.|--+|.....+..+|..+|..|+.||
T Consensus 185 d~~~~~~~~~~~~~~~vs~e~a~~L~~aG------------~g~LDvRLkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 185 DTSDEPNNVGHPKRALVSQEAAQLLESAG------------DGSLDVRLKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred ccccCccccCCCcccccchhhhhhhcccC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122232222211111 22333456677788888999999999888
No 491
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=54.11 E-value=42 Score=42.50 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-+|.+-+...+.--..|++.+..++.-.
T Consensus 669 ~iL~~F~~n~~~kmkkl~~~~k~A~~af 696 (830)
T KOG1923|consen 669 VILSEFLDNNKPKMKKLRKDFKDAAEAF 696 (830)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777776666544
No 492
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=54.07 E-value=6.2 Score=49.39 Aligned_cols=41 Identities=29% Similarity=0.751 Sum_probs=32.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-------CCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiCR~~i~~ 1096 (1102)
+|.||......-+.+-|.|. ||..|... +..||+|+..+..
T Consensus 23 Ec~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 23 ECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred cCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 89999887777777889999 99999654 3569999976543
No 493
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.05 E-value=1.2e+02 Score=27.55 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 651 LEREIQEKRRQMRILEQ 667 (1102)
Q Consensus 651 L~~el~dk~eei~~l~q 667 (1102)
|.+-|++|.++|+.|+.
T Consensus 3 l~~~l~EKDe~Ia~L~e 19 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLME 19 (74)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 45678889999988884
No 494
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=53.79 E-value=7.5 Score=45.10 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=19.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
++..++.+ ...|+..|.||||||.+|.
T Consensus 136 ~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 136 VIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 44444443 2357888999999999984
No 495
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=53.77 E-value=5.8 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.6
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.++.++..|..|||||+||.
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHH
Confidence 367888889999999999985
No 496
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.74 E-value=12 Score=42.55 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56677999999999985
No 497
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=53.57 E-value=6.1 Score=45.06 Aligned_cols=48 Identities=27% Similarity=0.591 Sum_probs=24.1
Q ss_pred ccccccccccccceEEeCC-----CCcccchhhhhcC----CCCCCCcccccceeecc
Q 001316 1053 SHMCKVCFESPTAAILLPC-----RHFCLCKSCSLAC----SECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pC-----gH~~~C~~C~~~~----~~CPiCR~~i~~~i~if 1101 (1102)
...|+||-..+.-.+|..= +|+ +|..|...- -.||.|...-...+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 3589999999888887665 455 899995432 45999998877766554
No 498
>PF13166 AAA_13: AAA domain
Probab=53.50 E-value=6e+02 Score=32.61 Aligned_cols=188 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND---PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 683 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~---~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~ 683 (1102)
+..+.+.++++.+...+......+....+-.... ........+.+...+....+.++.+.+.+..-...........
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~ 359 (712)
T PF13166_consen 280 EEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELE 359 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 763 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~ 763 (1102)
++...+..+...++ .+...+.+....+..+..+...++..+
T Consensus 360 ~~~~~~~~l~~~i~--------------~~n~~i~~~n~~~~~~~~~~~~~~~~~------------------------- 400 (712)
T PF13166_consen 360 EINEDIDELNSIID--------------ELNELIEEHNEKIDNLKKEQNELKDKL------------------------- 400 (712)
T ss_pred chhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q ss_pred HhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 764 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 764 ~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
....+.+++.....+..+...+......+..+...++........++++|..++.....-..++..+|..
T Consensus 401 -----~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~ 470 (712)
T PF13166_consen 401 -----WLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKR 470 (712)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 499
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=53.41 E-value=5.9 Score=44.24 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=0.0
Q ss_pred eEEeeccCCCCCccc
Q 001316 176 TVFAYGVTSSGKTHT 190 (1102)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1102)
+|+-||++|+|||++
T Consensus 153 nVLFyGppGTGKTm~ 167 (368)
T COG1223 153 NVLFYGPPGTGKTMM 167 (368)
T ss_pred eeEEECCCCccHHHH
No 500
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.77 E-value=9.4 Score=40.32 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccc
Q 001316 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1102)
...++.++.|.| ++..++||+|||.+
T Consensus 27 ~~~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 27 ARAIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHHHhcCCc--EEEECCCCCcHHHH
Done!