Query 001316
Match_columns 1102
No_of_seqs 737 out of 3484
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 21:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 1.4E-88 4.9E-93 776.6 24.0 343 97-445 8-360 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 1.4E-87 4.7E-92 768.8 27.0 342 97-452 2-351 (369)
3 3b6u_A Kinesin-like protein KI 100.0 4.5E-87 1.5E-91 764.5 26.9 342 96-438 17-372 (372)
4 2vvg_A Kinesin-2; motor protei 100.0 9.4E-87 3.2E-91 757.7 27.2 329 99-429 3-346 (350)
5 1goj_A Kinesin, kinesin heavy 100.0 1.7E-86 5.9E-91 757.5 29.1 333 97-431 3-343 (355)
6 3bfn_A Kinesin-like protein KI 100.0 4.2E-87 1.4E-91 766.9 24.0 347 96-449 17-373 (388)
7 1t5c_A CENP-E protein, centrom 100.0 9.4E-87 3.2E-91 758.1 25.8 328 99-430 3-340 (349)
8 2owm_A Nckin3-434, related to 100.0 3E-86 1E-90 774.0 28.2 330 96-427 34-422 (443)
9 2zfi_A Kinesin-like protein KI 100.0 1.6E-85 5.6E-90 752.9 26.5 329 99-427 3-363 (366)
10 1bg2_A Kinesin; motor protein, 100.0 3.3E-85 1.1E-89 739.3 25.7 315 97-418 4-325 (325)
11 3lre_A Kinesin-like protein KI 100.0 5.5E-85 1.9E-89 745.7 27.5 322 96-418 6-355 (355)
12 1x88_A Kinesin-like protein KI 100.0 3E-85 1E-89 748.9 22.7 328 97-426 5-358 (359)
13 2wbe_C Bipolar kinesin KRP-130 100.0 1.6E-84 5.3E-89 745.9 24.5 332 96-429 19-372 (373)
14 4a14_A Kinesin, kinesin-like p 100.0 3.9E-84 1.3E-88 736.9 25.9 320 94-416 5-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 8.4E-84 2.9E-88 735.7 26.6 318 101-418 2-350 (354)
16 3nwn_A Kinesin-like protein KI 100.0 5.5E-84 1.9E-88 737.2 23.5 318 97-418 21-359 (359)
17 2h58_A Kinesin-like protein KI 100.0 3.3E-83 1.1E-87 724.5 29.0 318 98-419 2-329 (330)
18 2nr8_A Kinesin-like protein KI 100.0 8.5E-84 2.9E-88 735.4 22.9 321 94-418 17-358 (358)
19 3t0q_A AGR253WP; kinesin, alph 100.0 2.8E-82 9.7E-87 722.4 26.9 320 98-422 3-348 (349)
20 2rep_A Kinesin-like protein KI 100.0 2.4E-82 8.1E-87 727.1 25.8 319 96-418 18-376 (376)
21 1f9v_A Kinesin-like protein KA 100.0 4.3E-82 1.5E-86 719.9 26.9 320 99-423 2-346 (347)
22 1ry6_A Internal kinesin; kines 100.0 5.5E-82 1.9E-86 721.0 26.1 320 101-427 1-340 (360)
23 2heh_A KIF2C protein; kinesin, 100.0 4.2E-82 1.5E-86 725.3 24.9 315 98-421 49-385 (387)
24 3u06_A Protein claret segregat 100.0 1.4E-81 4.8E-86 728.5 27.0 326 97-429 56-394 (412)
25 1v8k_A Kinesin-like protein KI 100.0 9.8E-82 3.3E-86 726.3 25.3 316 98-422 69-406 (410)
26 4etp_A Kinesin-like protein KA 100.0 1.6E-80 5.4E-85 719.9 27.6 322 97-423 56-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 8.7E-80 3E-84 699.0 23.9 309 96-422 18-339 (344)
28 4h1g_A Maltose binding protein 100.0 2.4E-74 8E-79 717.1 26.0 318 97-419 371-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 7.3E-31 2.5E-35 245.3 4.4 99 343-441 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 5.5E-28 1.9E-32 233.3 8.3 98 347-444 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 4E-24 1.4E-28 230.9 5.9 263 98-424 22-295 (298)
32 2ea5_A Cell growth regulator w 99.2 7.9E-12 2.7E-16 109.3 4.3 51 1052-1102 14-64 (68)
33 2yho_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 108.5 5.9 47 1055-1101 20-66 (79)
34 2vje_B MDM4 protein; proto-onc 99.1 2.1E-11 7.2E-16 104.9 1.2 50 1052-1101 6-61 (63)
35 4ic3_A E3 ubiquitin-protein li 99.1 1.4E-10 4.9E-15 102.8 6.0 47 1055-1101 26-72 (74)
36 2ecg_A Baculoviral IAP repeat- 99.0 1.6E-10 5.4E-15 102.8 4.2 47 1055-1101 27-73 (75)
37 2vje_A E3 ubiquitin-protein li 99.0 7E-11 2.4E-15 101.9 0.7 50 1052-1101 7-62 (64)
38 3t6p_A Baculoviral IAP repeat- 98.7 4.2E-09 1.4E-13 119.7 4.4 47 1055-1101 297-343 (345)
39 4ayc_A E3 ubiquitin-protein li 98.3 2.3E-07 7.9E-12 92.0 2.8 44 1054-1098 54-101 (138)
40 1chc_A Equine herpes virus-1 r 98.2 7E-07 2.4E-11 77.1 2.7 48 1053-1101 5-57 (68)
41 2ecn_A Ring finger protein 141 98.1 4.5E-07 1.5E-11 78.8 1.4 49 1051-1101 13-65 (70)
42 2d8t_A Dactylidin, ring finger 98.1 9.5E-07 3.3E-11 77.2 3.4 44 1052-1096 14-61 (71)
43 2ysl_A Tripartite motif-contai 98.1 1.2E-06 4E-11 76.7 3.2 44 1052-1096 19-69 (73)
44 2csy_A Zinc finger protein 183 98.1 1.1E-06 3.9E-11 78.7 3.0 46 1051-1097 13-62 (81)
45 1i84_S Smooth muscle myosin he 98.0 6.2E-06 2.1E-10 108.1 9.7 36 155-191 150-186 (1184)
46 1c1g_A Tropomyosin; contractIl 98.0 0.021 7.3E-07 60.6 38.5 15 610-624 2-16 (284)
47 2y1n_A E3 ubiquitin-protein li 98.0 1.9E-06 6.6E-11 98.6 4.2 47 1054-1101 333-384 (389)
48 2xeu_A Ring finger protein 4; 98.0 1.3E-06 4.6E-11 74.1 2.0 48 1053-1101 3-63 (64)
49 2ecm_A Ring finger and CHY zin 98.0 2E-06 7E-11 70.8 2.8 43 1052-1095 4-54 (55)
50 2ea6_A Ring finger protein 4; 98.0 1.3E-06 4.5E-11 75.2 1.7 45 1051-1096 13-68 (69)
51 2egp_A Tripartite motif-contai 98.0 2.3E-06 7.9E-11 75.9 2.8 45 1051-1096 10-65 (79)
52 3ng2_A RNF4, snurf, ring finge 98.0 1.4E-06 4.8E-11 75.7 1.4 49 1052-1101 9-70 (71)
53 2ct2_A Tripartite motif protei 98.0 2.7E-06 9.2E-11 77.0 3.0 46 1050-1096 12-68 (88)
54 2ecw_A Tripartite motif-contai 98.0 3.6E-06 1.2E-10 75.4 3.7 44 1052-1096 18-71 (85)
55 2kiz_A E3 ubiquitin-protein li 98.0 3.2E-06 1.1E-10 73.2 3.1 49 1051-1100 12-67 (69)
56 2djb_A Polycomb group ring fin 97.9 3.6E-06 1.2E-10 73.7 3.2 46 1051-1097 13-63 (72)
57 1i84_S Smooth muscle myosin he 97.9 1E-05 3.4E-10 106.1 8.4 20 607-626 857-876 (1184)
58 1bor_A Transcription factor PM 97.9 2.8E-06 9.4E-11 71.0 2.0 44 1052-1096 5-49 (56)
59 3fl2_A E3 ubiquitin-protein li 97.9 6.6E-06 2.3E-10 79.8 4.9 41 1055-1096 54-99 (124)
60 1c1g_A Tropomyosin; contractIl 97.9 0.036 1.2E-06 58.8 37.2 24 607-630 13-36 (284)
61 2ecv_A Tripartite motif-contai 97.9 4.1E-06 1.4E-10 75.0 3.1 44 1052-1096 18-71 (85)
62 2ecy_A TNF receptor-associated 97.9 3.7E-06 1.3E-10 72.3 2.6 45 1051-1096 13-62 (66)
63 1e4u_A Transcriptional repress 97.9 2.6E-06 8.8E-11 76.3 1.4 50 1051-1101 9-67 (78)
64 1iym_A EL5; ring-H2 finger, ub 97.9 6.4E-06 2.2E-10 67.9 3.5 43 1052-1095 4-54 (55)
65 2l0b_A E3 ubiquitin-protein li 97.9 4.1E-06 1.4E-10 77.0 2.4 45 1052-1097 39-90 (91)
66 1jm7_A BRCA1, breast cancer ty 97.9 6.7E-06 2.3E-10 77.9 3.6 41 1055-1096 23-70 (112)
67 2yur_A Retinoblastoma-binding 97.8 9E-06 3.1E-10 71.6 4.0 45 1050-1095 12-63 (74)
68 2ect_A Ring finger protein 126 97.8 6.3E-06 2.2E-10 73.1 2.8 45 1052-1097 14-65 (78)
69 2ep4_A Ring finger protein 24; 97.8 6.5E-06 2.2E-10 72.2 2.7 48 1051-1099 13-67 (74)
70 1x4j_A Ring finger protein 38; 97.8 5.4E-06 1.9E-10 73.1 2.1 44 1052-1096 22-72 (75)
71 3ztg_A E3 ubiquitin-protein li 97.8 7.8E-06 2.7E-10 74.9 2.7 44 1050-1094 10-60 (92)
72 1g25_A CDK-activating kinase a 97.8 5.9E-06 2E-10 70.7 1.3 42 1054-1096 4-55 (65)
73 3l11_A E3 ubiquitin-protein li 97.7 9.9E-06 3.4E-10 77.4 2.7 42 1054-1096 16-62 (115)
74 3lrq_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 74.6 3.6 41 1055-1096 24-70 (100)
75 1z6u_A NP95-like ring finger p 97.7 1.2E-05 4E-10 81.0 3.1 43 1054-1097 79-126 (150)
76 1t1h_A Gspef-atpub14, armadill 97.7 1.8E-05 6.1E-10 70.2 3.3 45 1051-1096 6-55 (78)
77 2ckl_B Ubiquitin ligase protei 97.7 1.1E-05 3.7E-10 82.2 1.9 42 1054-1096 55-102 (165)
78 2y43_A E3 ubiquitin-protein li 97.7 1.2E-05 4.2E-10 74.7 2.0 41 1055-1096 24-69 (99)
79 2ckl_A Polycomb group ring fin 97.6 1.6E-05 5.4E-10 75.2 2.5 43 1053-1096 15-62 (108)
80 2ysj_A Tripartite motif-contai 97.6 2.6E-05 8.9E-10 66.2 2.8 39 1051-1090 18-63 (63)
81 1jm7_B BARD1, BRCA1-associated 97.6 2.9E-05 1E-09 74.5 3.3 40 1055-1095 24-66 (117)
82 2ecj_A Tripartite motif-contai 97.6 2E-05 6.8E-10 65.5 1.8 38 1052-1090 14-58 (58)
83 3hct_A TNF receptor-associated 97.5 3.4E-05 1.2E-09 74.2 2.8 45 1051-1096 16-65 (118)
84 1wt6_A Myotonin-protein kinase 97.5 0.00013 4.4E-09 64.3 5.9 50 903-959 11-70 (81)
85 1v87_A Deltex protein 2; ring- 97.4 2.9E-05 1E-09 73.9 1.0 43 1054-1097 26-95 (114)
86 1rmd_A RAG1; V(D)J recombinati 97.3 8.3E-05 2.9E-09 71.1 2.9 41 1055-1096 25-70 (116)
87 2c2l_A CHIP, carboxy terminus 97.3 0.00013 4.3E-09 79.9 4.3 46 1050-1096 205-255 (281)
88 3na7_A HP0958; flagellar bioge 97.2 0.012 4.2E-07 64.1 19.0 31 812-842 89-119 (256)
89 2kre_A Ubiquitin conjugation f 97.2 0.00012 4.1E-09 68.5 2.5 45 1051-1096 27-75 (100)
90 2ecl_A Ring-box protein 2; RNF 97.2 0.00015 5E-09 65.1 2.9 43 1053-1096 15-76 (81)
91 4ap4_A E3 ubiquitin ligase RNF 97.2 8.3E-05 2.8E-09 72.0 1.2 44 1052-1096 6-60 (133)
92 2kr4_A Ubiquitin conjugation f 97.2 0.00015 5.1E-09 65.8 2.6 45 1051-1096 12-60 (85)
93 1wgm_A Ubiquitin conjugation f 97.1 0.00016 5.3E-09 67.5 2.6 44 1052-1096 21-69 (98)
94 3knv_A TNF receptor-associated 97.1 5.3E-05 1.8E-09 75.4 -0.8 43 1051-1094 29-76 (141)
95 2f42_A STIP1 homology and U-bo 97.1 0.00041 1.4E-08 71.5 5.5 49 1047-1096 100-153 (179)
96 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00019 6.7E-09 69.4 2.4 49 1052-1101 71-132 (133)
97 3hcs_A TNF receptor-associated 96.8 0.00055 1.9E-08 69.8 3.6 46 1050-1096 15-65 (170)
98 3vkg_A Dynein heavy chain, cyt 96.8 0.073 2.5E-06 75.2 25.2 65 771-835 2042-2106(3245)
99 3dpl_R Ring-box protein 1; ubi 96.7 0.00069 2.4E-08 64.1 3.1 41 1054-1095 38-100 (106)
100 2v71_A Nuclear distribution pr 96.6 0.18 6.2E-06 52.0 20.3 153 599-796 2-155 (189)
101 4a0k_B E3 ubiquitin-protein li 96.4 0.00059 2E-08 65.7 0.3 41 1054-1095 49-111 (117)
102 2yu4_A E3 SUMO-protein ligase 96.3 0.0015 5.1E-08 60.2 2.7 41 1052-1093 6-59 (94)
103 3na7_A HP0958; flagellar bioge 96.0 0.82 2.8E-05 49.6 22.6 120 687-825 32-151 (256)
104 1wim_A KIAA0161 protein; ring 95.9 0.0015 5E-08 60.0 0.3 41 1052-1093 4-61 (94)
105 2dfs_A Myosin-5A; myosin-V, in 95.9 0.046 1.6E-06 70.8 13.9 69 769-840 975-1043(1080)
106 3htk_C E3 SUMO-protein ligase 95.7 0.0032 1.1E-07 68.3 1.9 44 1052-1096 180-232 (267)
107 2d8s_A Cellular modulator of i 95.6 0.0075 2.6E-07 54.0 3.8 45 1052-1097 14-71 (80)
108 2dfs_A Myosin-5A; myosin-V, in 95.6 0.11 3.8E-06 67.2 15.9 34 156-190 138-172 (1080)
109 3vk6_A E3 ubiquitin-protein li 95.2 0.0069 2.4E-07 56.0 2.0 42 1055-1097 3-50 (101)
110 3vkg_A Dynein heavy chain, cyt 95.0 0.43 1.5E-05 67.7 19.8 190 641-838 1894-2102(3245)
111 2efr_A General control protein 94.7 4 0.00014 40.8 21.6 102 609-738 2-107 (155)
112 3o0z_A RHO-associated protein 94.1 4.8 0.00016 40.6 19.7 107 692-833 32-138 (168)
113 2ocy_A RAB guanine nucleotide 93.9 3.4 0.00012 41.2 18.1 89 713-826 4-92 (154)
114 2bay_A PRE-mRNA splicing facto 93.4 0.027 9.2E-07 47.7 1.7 42 1054-1096 4-50 (61)
115 3oja_B Anopheles plasmodium-re 93.0 0.94 3.2E-05 54.6 15.2 25 713-737 468-492 (597)
116 3ec2_A DNA replication protein 92.8 0.026 8.9E-07 57.1 0.9 52 140-192 5-56 (180)
117 2v71_A Nuclear distribution pr 92.6 11 0.00036 39.0 23.5 61 771-838 95-155 (189)
118 3oja_B Anopheles plasmodium-re 92.6 0.5 1.7E-05 57.0 11.9 37 814-850 538-574 (597)
119 3nmd_A CGMP dependent protein 92.0 0.28 9.6E-06 42.7 6.1 51 686-736 18-68 (72)
120 3o0z_A RHO-associated protein 91.6 11 0.00037 38.1 18.1 47 689-735 8-54 (168)
121 2w58_A DNAI, primosome compone 91.2 0.067 2.3E-06 54.9 1.9 51 141-192 21-72 (202)
122 2qgz_A Helicase loader, putati 90.4 0.091 3.1E-06 58.5 2.0 51 141-192 120-170 (308)
123 4gkw_A Spindle assembly abnorm 90.2 8.6 0.00029 36.8 14.8 49 910-958 102-150 (167)
124 3s9g_A Protein hexim1; cyclin 88.5 2.3 8E-05 38.8 9.2 57 774-837 33-89 (104)
125 2ocy_A RAB guanine nucleotide 87.2 7.3 0.00025 38.9 12.9 93 645-738 43-145 (154)
126 3i00_A HIP-I, huntingtin-inter 86.5 3.7 0.00013 39.4 10.0 73 643-738 12-84 (120)
127 3s4r_A Vimentin; alpha-helix, 86.4 11 0.00037 34.5 12.7 34 923-956 59-92 (93)
128 3t15_A Ribulose bisphosphate c 86.0 0.26 9E-06 54.2 2.1 48 144-191 2-53 (293)
129 4gkw_A Spindle assembly abnorm 86.0 25 0.00085 33.7 17.7 70 695-799 82-154 (167)
130 2jee_A YIIU; FTSZ, septum, coi 85.9 7.7 0.00026 34.5 10.9 60 757-837 6-65 (81)
131 2v4h_A NF-kappa-B essential mo 85.5 13 0.00045 34.8 12.7 27 712-738 35-61 (110)
132 3k1l_B Fancl; UBC, ring, RWD, 84.8 0.21 7.2E-06 56.0 0.6 44 1054-1098 309-375 (381)
133 3u1c_A Tropomyosin alpha-1 cha 83.7 22 0.00075 32.9 13.7 10 821-830 87-96 (101)
134 4b4t_M 26S protease regulatory 83.3 1.1 3.6E-05 52.4 5.6 73 141-213 177-271 (434)
135 1vyx_A ORF K3, K3RING; zinc-bi 82.8 0.57 2E-05 39.4 2.3 44 1052-1095 5-58 (60)
136 2bjv_A PSP operon transcriptio 82.7 0.43 1.5E-05 51.2 1.9 45 141-191 2-46 (265)
137 4etp_B Spindle POLE BODY-assoc 82.4 4.2 0.00014 45.0 9.4 121 98-241 57-183 (333)
138 2jee_A YIIU; FTSZ, septum, coi 82.4 13 0.00045 33.1 10.8 27 712-738 10-36 (81)
139 2r62_A Cell division protease 82.2 0.55 1.9E-05 50.2 2.5 50 141-191 7-61 (268)
140 3hnw_A Uncharacterized protein 82.1 7.9 0.00027 38.0 10.5 67 773-839 70-136 (138)
141 3s84_A Apolipoprotein A-IV; fo 81.9 63 0.0021 35.1 21.2 35 923-957 212-247 (273)
142 3oja_A Leucine-rich immune mol 81.2 27 0.00093 40.7 16.8 40 779-818 443-482 (487)
143 3tnu_B Keratin, type II cytosk 81.1 32 0.0011 33.1 14.4 106 690-840 18-123 (129)
144 4b4t_K 26S protease regulatory 80.8 2.1 7.1E-05 49.9 6.8 113 103-215 117-264 (428)
145 1jbk_A CLPB protein; beta barr 80.6 0.76 2.6E-05 45.4 2.7 30 163-192 32-61 (195)
146 2e7s_A RAB guanine nucleotide 79.9 3 0.0001 40.6 6.4 30 709-738 104-133 (135)
147 1deq_A Fibrinogen (alpha chain 79.9 20 0.00068 40.5 13.8 100 719-842 64-163 (390)
148 3h4m_A Proteasome-activating n 79.9 0.57 2E-05 50.6 1.6 51 141-191 13-68 (285)
149 1l8q_A Chromosomal replication 79.1 0.84 2.9E-05 50.5 2.7 49 141-192 7-55 (324)
150 3cf0_A Transitional endoplasmi 78.9 0.63 2.2E-05 51.2 1.6 51 141-191 11-66 (301)
151 3bas_A Myosin heavy chain, str 78.9 22 0.00076 32.1 11.6 48 773-841 37-84 (89)
152 4b4t_L 26S protease subunit RP 78.4 2.7 9.2E-05 49.1 6.8 75 141-215 177-273 (437)
153 3te6_A Regulatory protein SIR3 78.4 0.64 2.2E-05 52.1 1.4 28 164-191 35-62 (318)
154 1g8p_A Magnesium-chelatase 38 78.2 0.7 2.4E-05 51.2 1.7 44 140-191 19-62 (350)
155 1ixz_A ATP-dependent metallopr 78.0 0.44 1.5E-05 50.8 -0.0 52 140-192 11-67 (254)
156 3tnu_A Keratin, type I cytoske 77.9 33 0.0011 33.1 13.4 48 772-840 78-125 (131)
157 2v66_B Nuclear distribution pr 77.5 48 0.0017 31.2 16.1 63 771-840 42-104 (111)
158 3b9p_A CG5977-PA, isoform A; A 77.5 0.62 2.1E-05 50.6 1.0 51 141-191 17-71 (297)
159 2p65_A Hypothetical protein PF 77.4 0.86 2.9E-05 45.0 1.9 30 163-192 32-61 (187)
160 3swk_A Vimentin; cytoskeleton, 77.2 14 0.00047 33.3 9.6 72 772-843 1-79 (86)
161 2fxo_A Myosin heavy chain, car 77.2 53 0.0018 31.5 17.0 18 652-669 12-29 (129)
162 3cve_A Homer protein homolog 1 76.8 16 0.00054 31.9 9.4 27 712-738 4-30 (72)
163 3hnw_A Uncharacterized protein 76.8 13 0.00044 36.5 10.0 30 709-738 69-98 (138)
164 2fxo_A Myosin heavy chain, car 76.3 56 0.0019 31.4 17.3 25 818-842 95-119 (129)
165 3a7p_A Autophagy protein 16; c 75.9 39 0.0013 33.5 13.0 37 780-837 98-134 (152)
166 2ko5_A Ring finger protein Z; 75.5 0.82 2.8E-05 41.7 1.0 45 1054-1100 29-77 (99)
167 3bos_A Putative DNA replicatio 75.5 1.4 4.9E-05 45.4 3.1 45 142-192 25-70 (242)
168 2kjq_A DNAA-related protein; s 74.9 1.3 4.6E-05 43.6 2.5 18 175-192 37-54 (149)
169 3i00_A HIP-I, huntingtin-inter 74.9 10 0.00035 36.4 8.5 69 719-797 12-80 (120)
170 3tnu_B Keratin, type II cytosk 74.9 33 0.0011 33.0 12.3 20 775-794 100-119 (129)
171 3cvf_A Homer-3, homer protein 74.3 11 0.00037 33.5 7.8 28 711-738 9-36 (79)
172 1d2n_A N-ethylmaleimide-sensit 74.1 1.3 4.5E-05 47.5 2.5 21 171-191 61-81 (272)
173 4b4t_J 26S protease regulatory 74.1 4.3 0.00015 46.9 6.8 74 142-215 145-240 (405)
174 3uk6_A RUVB-like 2; hexameric 73.5 1 3.5E-05 50.4 1.4 45 142-191 41-87 (368)
175 3jsv_C NF-kappa-B essential mo 73.2 12 0.00043 34.0 8.1 33 768-800 58-90 (94)
176 3d8b_A Fidgetin-like protein 1 72.9 0.92 3.1E-05 51.3 0.9 51 141-191 80-134 (357)
177 1x79_B RAB GTPase binding effe 72.8 10 0.00035 35.8 7.8 30 645-674 44-73 (112)
178 2zet_C Melanophilin; complex, 72.1 1.9 6.5E-05 43.2 2.8 65 1027-1092 42-116 (153)
179 1deq_A Fibrinogen (alpha chain 72.1 49 0.0017 37.4 14.2 30 765-794 128-157 (390)
180 2k48_A Nucleoprotein; viral pr 71.8 15 0.00052 33.9 8.4 68 646-742 35-102 (107)
181 1iy2_A ATP-dependent metallopr 71.8 0.66 2.2E-05 50.3 -0.7 51 141-192 36-91 (278)
182 3ol1_A Vimentin; structural ge 71.5 60 0.0021 30.8 13.1 30 709-738 21-50 (119)
183 3swk_A Vimentin; cytoskeleton, 71.1 44 0.0015 30.0 11.3 33 814-846 1-33 (86)
184 2z4s_A Chromosomal replication 70.9 1.7 5.8E-05 50.7 2.6 49 140-192 100-148 (440)
185 2v1u_A Cell division control p 70.3 1 3.5E-05 50.2 0.5 22 171-192 41-62 (387)
186 2qz4_A Paraplegin; AAA+, SPG7, 69.9 0.73 2.5E-05 48.8 -0.8 19 173-191 38-56 (262)
187 1qde_A EIF4A, translation init 69.7 1.9 6.5E-05 44.5 2.3 24 165-190 44-67 (224)
188 3a7o_A Autophagy protein 16; c 69.4 17 0.00058 31.2 7.5 24 709-732 19-42 (75)
189 3ghg_A Fibrinogen alpha chain; 69.4 23 0.0008 41.5 11.2 35 808-842 126-160 (562)
190 3s4r_A Vimentin; alpha-helix, 69.4 62 0.0021 29.4 12.1 78 757-843 9-86 (93)
191 1vec_A ATP-dependent RNA helic 69.3 2.2 7.4E-05 43.4 2.6 25 165-191 33-57 (206)
192 3vfd_A Spastin; ATPase, microt 68.3 1.2 4E-05 50.8 0.4 52 140-191 110-165 (389)
193 2no2_A HIP-I, huntingtin-inter 68.2 79 0.0027 29.6 14.4 68 650-733 26-93 (107)
194 1xwi_A SKD1 protein; VPS4B, AA 68.1 1.3 4.3E-05 49.4 0.6 50 142-191 9-62 (322)
195 1lv7_A FTSH; alpha/beta domain 67.8 1.1 3.6E-05 47.8 -0.1 50 141-191 8-62 (257)
196 2chg_A Replication factor C sm 67.7 2.3 7.8E-05 42.9 2.4 22 171-192 35-56 (226)
197 2gxq_A Heat resistant RNA depe 67.7 2.3 7.7E-05 43.2 2.4 24 166-191 32-55 (207)
198 3syl_A Protein CBBX; photosynt 67.7 1.5 5.2E-05 47.7 1.1 20 172-191 65-84 (309)
199 3ghg_A Fibrinogen alpha chain; 67.4 1E+02 0.0036 36.2 16.0 52 685-739 104-155 (562)
200 2x8a_A Nuclear valosin-contain 67.0 1 3.5E-05 49.1 -0.4 50 142-191 7-61 (274)
201 1fnn_A CDC6P, cell division co 65.5 3.4 0.00012 46.1 3.5 45 142-191 14-61 (389)
202 4emc_A Monopolin complex subun 65.0 22 0.00076 36.4 8.8 27 712-738 10-36 (190)
203 2ct0_A Non-SMC element 1 homol 64.8 4.6 0.00016 35.4 3.4 45 1053-1098 15-66 (74)
204 4b4t_I 26S protease regulatory 64.7 13 0.00043 43.4 8.0 112 104-215 128-274 (437)
205 1sxj_C Activator 1 40 kDa subu 64.6 2.8 9.4E-05 46.7 2.5 42 143-192 23-64 (340)
206 4b4t_H 26S protease regulatory 64.5 3.3 0.00011 48.7 3.1 74 142-215 206-301 (467)
207 3dkp_A Probable ATP-dependent 64.2 2.8 9.7E-05 44.0 2.4 25 165-191 59-83 (245)
208 3mq7_A Bone marrow stromal ant 64.0 69 0.0024 30.2 11.2 26 713-738 37-62 (121)
209 2v4h_A NF-kappa-B essential mo 64.0 52 0.0018 30.9 10.3 28 768-795 80-107 (110)
210 3ly5_A ATP-dependent RNA helic 63.9 2.3 8E-05 45.6 1.7 26 164-191 83-108 (262)
211 3qh9_A Liprin-beta-2; coiled-c 63.7 20 0.00068 31.8 7.1 25 707-731 53-77 (81)
212 3bor_A Human initiation factor 63.7 1.9 6.4E-05 45.4 0.8 25 165-191 60-84 (237)
213 1p9r_A General secretion pathw 63.6 3 0.0001 48.4 2.6 29 164-192 157-185 (418)
214 3ol1_A Vimentin; structural ge 63.6 1E+02 0.0035 29.2 14.0 34 813-846 20-53 (119)
215 3eie_A Vacuolar protein sortin 63.4 1.7 5.8E-05 48.2 0.5 50 142-191 15-68 (322)
216 3u59_A Tropomyosin beta chain; 63.4 91 0.0031 28.6 14.9 31 783-813 56-86 (101)
217 2qp9_X Vacuolar protein sortin 62.7 2 6.9E-05 48.4 0.9 51 141-191 47-101 (355)
218 2v66_B Nuclear distribution pr 62.3 1.1E+02 0.0036 28.9 13.7 25 771-795 77-101 (111)
219 2pl3_A Probable ATP-dependent 61.5 3.4 0.00012 43.0 2.4 25 165-191 55-79 (236)
220 2eqb_B RAB guanine nucleotide 61.4 40 0.0014 31.0 9.0 57 772-828 6-62 (97)
221 1go4_E MAD1 (mitotic arrest de 61.4 35 0.0012 31.6 8.7 64 771-837 19-92 (100)
222 1t6n_A Probable ATP-dependent 61.3 3.3 0.00011 42.6 2.2 24 166-191 45-68 (220)
223 3tnu_A Keratin, type I cytoske 61.2 82 0.0028 30.3 12.0 53 616-672 19-71 (131)
224 3jvv_A Twitching mobility prot 60.4 3.3 0.00011 47.0 2.2 28 165-192 114-141 (356)
225 2eqb_B RAB guanine nucleotide 60.4 1E+02 0.0036 28.3 14.5 27 712-738 9-35 (97)
226 2qby_B CDC6 homolog 3, cell di 60.4 4.2 0.00014 45.4 3.0 46 141-191 16-62 (384)
227 3jsv_C NF-kappa-B essential mo 60.4 61 0.0021 29.6 9.8 67 715-799 16-82 (94)
228 3hu3_A Transitional endoplasmi 60.2 3 0.0001 49.4 1.9 50 142-191 201-255 (489)
229 2ic6_A Nucleocapsid protein; h 60.0 36 0.0012 30.0 8.1 68 646-742 5-72 (78)
230 3b6e_A Interferon-induced heli 59.8 2 6.7E-05 43.8 0.1 24 167-192 43-66 (216)
231 1m1j_A Fibrinogen alpha subuni 59.0 1.6E+02 0.0053 34.1 15.2 100 719-842 62-161 (491)
232 4fi5_A Nucleoprotein; structur 58.9 33 0.0011 32.1 8.1 68 647-743 23-90 (113)
233 1wrb_A DJVLGB; RNA helicase, D 58.9 3.8 0.00013 43.3 2.2 24 166-191 54-77 (253)
234 3cvf_A Homer-3, homer protein 58.9 29 0.001 30.8 7.4 63 645-734 12-74 (79)
235 2efr_A General control protein 58.8 1.5E+02 0.0051 29.5 19.6 30 709-738 29-58 (155)
236 2zan_A Vacuolar protein sortin 58.6 2.2 7.4E-05 49.8 0.2 51 141-191 130-184 (444)
237 2c9o_A RUVB-like 1; hexameric 58.5 4.4 0.00015 47.3 2.8 46 141-191 33-80 (456)
238 2pms_C Pneumococcal surface pr 58.1 84 0.0029 30.2 10.9 20 719-738 10-29 (125)
239 3r2p_A Apolipoprotein A-I; amp 58.0 38 0.0013 34.6 9.5 47 709-772 134-181 (185)
240 3iuy_A Probable ATP-dependent 58.0 4.2 0.00014 42.1 2.3 24 166-191 51-74 (228)
241 1hqc_A RUVB; extended AAA-ATPa 58.0 2.8 9.6E-05 45.8 1.0 20 172-191 36-55 (324)
242 3mq7_A Bone marrow stromal ant 57.8 1.2E+02 0.0041 28.7 11.6 28 823-850 21-48 (121)
243 3fmo_B ATP-dependent RNA helic 57.7 4.1 0.00014 44.7 2.3 27 165-191 122-148 (300)
244 1u0j_A DNA replication protein 57.0 4.8 0.00016 43.9 2.6 30 163-192 90-122 (267)
245 1cii_A Colicin IA; bacteriocin 56.9 1.2E+02 0.0043 34.9 13.8 92 751-842 329-420 (602)
246 3eiq_A Eukaryotic initiation f 56.5 4.7 0.00016 45.3 2.6 25 165-191 70-94 (414)
247 2a01_A Apolipoprotein A-I; fou 56.1 1.2E+02 0.0041 32.2 13.4 41 629-669 78-119 (243)
248 3pfi_A Holliday junction ATP-d 55.8 3.3 0.00011 45.7 1.1 44 143-191 27-72 (338)
249 2qby_A CDC6 homolog 1, cell di 55.5 3.1 0.00011 46.2 0.8 20 172-191 43-62 (386)
250 3ber_A Probable ATP-dependent 55.5 4.7 0.00016 42.8 2.2 24 166-191 74-97 (249)
251 3fe2_A Probable ATP-dependent 55.5 4.4 0.00015 42.5 2.0 24 166-191 60-83 (242)
252 2oxc_A Probable ATP-dependent 55.4 4.9 0.00017 41.8 2.3 24 166-191 55-78 (230)
253 3llm_A ATP-dependent RNA helic 55.2 4.3 0.00015 42.6 1.9 26 164-191 68-93 (235)
254 3u1c_A Tropomyosin alpha-1 cha 55.2 1.3E+02 0.0044 27.7 13.5 16 809-824 82-97 (101)
255 2ic9_A Nucleocapsid protein; h 54.6 46 0.0016 30.5 8.1 68 647-743 6-73 (96)
256 1zxa_A CGMP-dependent protein 54.5 14 0.00047 31.8 4.4 42 697-738 14-55 (67)
257 2e7s_A RAB guanine nucleotide 54.1 29 0.00099 33.8 7.2 58 770-827 24-81 (135)
258 2eyu_A Twitching motility prot 53.7 5 0.00017 43.3 2.1 20 173-192 24-43 (261)
259 1sxj_D Activator 1 41 kDa subu 53.7 4.5 0.00015 44.6 1.8 42 143-192 35-76 (353)
260 3co5_A Putative two-component 52.8 5.4 0.00019 38.5 2.0 20 173-192 26-45 (143)
261 1q0u_A Bstdead; DEAD protein, 52.0 3.7 0.00013 42.3 0.7 24 166-191 35-58 (219)
262 3a7p_A Autophagy protein 16; c 51.7 76 0.0026 31.4 9.8 37 699-735 87-123 (152)
263 2jun_A Midline-1; B-BOX, TRIM, 51.6 3.9 0.00013 37.3 0.7 29 1054-1083 4-35 (101)
264 1joc_A EEA1, early endosomal a 51.5 64 0.0022 30.9 9.3 29 1053-1082 69-101 (125)
265 3fmp_B ATP-dependent RNA helic 51.4 6 0.00021 45.9 2.4 26 165-190 122-147 (479)
266 1m1j_C Fibrinogen gamma chain; 51.3 90 0.0031 35.9 12.0 89 649-737 44-134 (409)
267 1tue_A Replication protein E1; 51.2 4.3 0.00015 42.7 1.0 27 166-192 48-76 (212)
268 3pxg_A Negative regulator of g 51.1 8.2 0.00028 45.2 3.5 42 143-192 178-219 (468)
269 3n70_A Transport activator; si 51.0 5.1 0.00018 38.7 1.5 20 172-191 22-41 (145)
270 1yke_B RNA polymerase II holoe 50.7 1.3E+02 0.0046 29.7 11.7 114 605-738 1-129 (151)
271 3nmd_A CGMP dependent protein 50.6 42 0.0015 29.2 6.9 32 912-943 32-63 (72)
272 1ofh_A ATP-dependent HSL prote 50.4 6.1 0.00021 42.5 2.2 18 174-191 50-67 (310)
273 3pey_A ATP-dependent RNA helic 50.3 6.2 0.00021 43.8 2.2 27 165-191 35-61 (395)
274 3fht_A ATP-dependent RNA helic 50.2 6.5 0.00022 44.0 2.4 27 165-191 55-81 (412)
275 1njg_A DNA polymerase III subu 50.1 5.3 0.00018 40.5 1.5 17 175-191 46-62 (250)
276 2j0s_A ATP-dependent RNA helic 49.8 6.3 0.00021 44.4 2.2 24 166-191 68-91 (410)
277 4emc_A Monopolin complex subun 48.9 21 0.00072 36.5 5.5 46 693-738 12-57 (190)
278 1iqp_A RFCS; clamp loader, ext 48.9 7.2 0.00025 42.3 2.4 22 171-192 43-64 (327)
279 2fiy_A Protein FDHE homolog; F 48.5 5.6 0.00019 44.3 1.4 42 1052-1093 181-231 (309)
280 2fz4_A DNA repair protein RAD2 48.5 6.7 0.00023 41.4 2.0 24 167-192 103-126 (237)
281 1ykh_B RNA polymerase II holoe 48.0 1.1E+02 0.0037 29.6 10.3 96 605-706 1-111 (132)
282 1wt6_A Myotonin-protein kinase 47.9 57 0.0019 28.9 7.3 32 707-738 37-68 (81)
283 4fcw_A Chaperone protein CLPB; 47.8 5.9 0.0002 42.9 1.5 17 175-191 48-64 (311)
284 1x79_B RAB GTPase binding effe 47.6 1.9E+02 0.0063 27.3 13.6 63 773-835 40-106 (112)
285 1w5s_A Origin recognition comp 47.3 9.1 0.00031 43.0 3.0 26 167-192 40-70 (412)
286 1s2m_A Putative ATP-dependent 46.9 7 0.00024 43.8 2.0 24 166-191 52-75 (400)
287 2z0m_A 337AA long hypothetical 46.9 7.6 0.00026 42.1 2.2 24 166-191 25-48 (337)
288 2ce7_A Cell division protein F 46.8 4.8 0.00017 47.5 0.6 51 140-191 11-66 (476)
289 2oap_1 GSPE-2, type II secreti 46.3 7.7 0.00026 46.2 2.2 21 170-192 258-278 (511)
290 1zbd_B Rabphilin-3A; G protein 46.2 4.1 0.00014 39.8 -0.1 49 1027-1082 35-88 (134)
291 3pvs_A Replication-associated 46.0 8.5 0.00029 44.9 2.6 43 144-191 25-67 (447)
292 2i1j_A Moesin; FERM, coiled-co 45.9 18 0.00062 43.6 5.4 29 707-735 348-376 (575)
293 1ic2_A Tropomyosin alpha chain 45.6 1.6E+02 0.0053 25.9 10.9 26 819-844 40-65 (81)
294 2r44_A Uncharacterized protein 45.4 5.5 0.00019 43.8 0.8 18 175-192 47-64 (331)
295 1gvn_B Zeta; postsegregational 45.3 13 0.00044 40.6 3.7 31 161-191 15-50 (287)
296 3u61_B DNA polymerase accessor 45.1 7.5 0.00026 42.6 1.8 19 174-192 48-66 (324)
297 2ewv_A Twitching motility prot 44.7 6.4 0.00022 44.8 1.2 21 172-192 134-154 (372)
298 2i4i_A ATP-dependent RNA helic 44.4 8.6 0.0003 43.2 2.2 24 166-191 46-69 (417)
299 3h1t_A Type I site-specific re 44.1 8.6 0.00029 46.1 2.2 28 164-192 189-216 (590)
300 4ad8_A DNA repair protein RECN 44.1 4.3E+02 0.015 30.8 17.0 14 723-736 228-241 (517)
301 2xnx_M M protein, M1-BC1; cell 43.8 76 0.0026 31.2 8.3 7 781-787 104-110 (146)
302 2dhr_A FTSH; AAA+ protein, hex 43.3 4.1 0.00014 48.4 -0.8 50 141-191 27-81 (499)
303 2chq_A Replication factor C sm 42.9 7 0.00024 42.2 1.1 22 171-192 35-56 (319)
304 2lw1_A ABC transporter ATP-bin 42.5 47 0.0016 29.8 6.3 26 647-672 23-48 (89)
305 1sxj_E Activator 1 40 kDa subu 42.3 7.8 0.00027 42.9 1.4 16 177-192 39-54 (354)
306 4h22_A Leucine-rich repeat fli 42.1 83 0.0028 29.2 7.8 59 721-793 22-80 (103)
307 3m9b_A Proteasome-associated A 41.6 21 0.00073 38.2 4.5 75 651-736 22-96 (251)
308 3fho_A ATP-dependent RNA helic 41.3 11 0.00036 44.6 2.4 25 167-191 151-175 (508)
309 2w83_C C-JUN-amino-terminal ki 41.1 1.5E+02 0.0051 26.0 8.8 51 771-842 9-59 (77)
310 4b3f_X DNA-binding protein smu 41.1 10 0.00034 46.3 2.2 27 165-192 197-223 (646)
311 1nfn_A Apolipoprotein E3; lipi 40.8 3E+02 0.01 28.1 13.0 21 606-626 23-43 (191)
312 1ojl_A Transcriptional regulat 40.6 7.9 0.00027 42.6 1.1 20 172-191 23-42 (304)
313 3he5_B Synzip2; heterodimeric 40.4 69 0.0024 24.8 5.9 24 776-799 8-31 (52)
314 1kd8_A GABH AIV, GCN4 acid bas 40.4 39 0.0014 25.2 4.3 31 816-846 4-34 (36)
315 1in4_A RUVB, holliday junction 40.4 13 0.00044 41.3 2.8 17 175-191 52-68 (334)
316 1xti_A Probable ATP-dependent 40.3 11 0.00037 41.9 2.2 25 165-191 38-62 (391)
317 3oiy_A Reverse gyrase helicase 40.1 10 0.00035 42.9 1.9 24 165-190 29-52 (414)
318 4dzn_A Coiled-coil peptide CC- 40.1 48 0.0016 23.5 4.5 28 709-736 3-30 (33)
319 1rif_A DAR protein, DNA helica 39.9 8 0.00028 41.6 1.0 24 167-192 123-146 (282)
320 3efg_A Protein SLYX homolog; x 39.9 63 0.0021 28.5 6.5 35 757-791 28-62 (78)
321 3c3g_A Alpha/beta peptide with 39.6 47 0.0016 24.4 4.5 28 816-843 3-30 (33)
322 1sxj_B Activator 1 37 kDa subu 39.5 12 0.00041 40.4 2.3 23 170-192 38-60 (323)
323 3hws_A ATP-dependent CLP prote 39.3 9.4 0.00032 42.8 1.4 18 174-191 51-68 (363)
324 1qvr_A CLPB protein; coiled co 39.0 9 0.00031 48.4 1.4 42 143-192 168-209 (854)
325 1n0w_A DNA repair protein RAD5 38.7 12 0.00041 38.7 2.1 30 163-192 10-42 (243)
326 1go4_E MAD1 (mitotic arrest de 38.3 23 0.00079 32.8 3.6 28 772-799 13-40 (100)
327 1jr3_A DNA polymerase III subu 38.3 17 0.00059 40.2 3.4 18 174-191 38-55 (373)
328 3i5x_A ATP-dependent RNA helic 38.2 14 0.00048 43.7 2.8 27 165-191 102-128 (563)
329 1t2k_D Cyclic-AMP-dependent tr 37.9 68 0.0023 26.6 6.2 13 821-833 44-56 (61)
330 2oqq_A Transcription factor HY 37.8 85 0.0029 24.4 5.9 36 757-792 3-38 (42)
331 1m1j_B Fibrinogen beta chain; 37.8 4.9E+02 0.017 30.3 15.5 30 812-841 167-196 (464)
332 3mq9_A Bone marrow stromal ant 37.6 1.9E+02 0.0065 33.2 12.4 96 655-777 375-470 (471)
333 1ci6_A Transcription factor AT 37.4 66 0.0023 27.1 6.1 31 773-803 25-55 (63)
334 1hv8_A Putative ATP-dependent 37.2 12 0.00042 40.9 1.9 25 166-191 37-61 (367)
335 2db3_A ATP-dependent RNA helic 37.2 13 0.00044 42.8 2.2 24 166-191 87-110 (434)
336 1fuu_A Yeast initiation factor 37.2 7.9 0.00027 43.0 0.4 25 165-191 51-75 (394)
337 1w36_D RECD, exodeoxyribonucle 37.1 12 0.00042 45.3 2.1 19 174-192 164-182 (608)
338 2v1x_A ATP-dependent DNA helic 37.0 16 0.00055 44.1 3.1 25 165-191 52-76 (591)
339 3iv1_A Tumor susceptibility ge 36.8 2.1E+02 0.0071 25.3 9.2 62 434-501 13-74 (78)
340 3s9g_A Protein hexim1; cyclin 36.6 2.5E+02 0.0086 25.7 10.1 58 771-835 37-94 (104)
341 1gd2_E Transcription factor PA 36.5 41 0.0014 29.1 4.7 26 774-799 32-57 (70)
342 4a2p_A RIG-I, retinoic acid in 36.1 14 0.00049 43.1 2.4 25 165-191 15-39 (556)
343 2cs3_A Protein C14ORF4, MY039 35.6 7.3 0.00025 34.4 -0.2 29 1053-1082 15-47 (93)
344 3m91_A Proteasome-associated A 35.3 1.2E+02 0.0039 24.7 6.8 17 783-799 14-30 (51)
345 1t6f_A Geminin; coiled-coil, c 35.2 46 0.0016 24.9 4.0 27 709-735 8-34 (37)
346 3s84_A Apolipoprotein A-IV; fo 34.9 4.6E+02 0.016 28.2 27.8 53 686-738 43-97 (273)
347 3cf2_A TER ATPase, transitiona 34.9 17 0.00058 45.6 2.9 51 141-191 200-255 (806)
348 2p5t_B PEZT; postsegregational 34.3 22 0.00074 37.7 3.2 31 161-191 14-49 (253)
349 1um8_A ATP-dependent CLP prote 34.3 14 0.00047 41.6 1.8 18 174-191 72-89 (376)
350 2cvh_A DNA repair and recombin 34.1 16 0.00055 37.0 2.1 29 164-192 7-38 (220)
351 3tbk_A RIG-I helicase domain; 33.9 16 0.00056 42.5 2.4 24 166-191 13-36 (555)
352 2lem_A Apolipoprotein A-I; lip 33.8 1.7E+02 0.0057 30.5 9.9 17 641-657 56-72 (216)
353 2oxj_A Hybrid alpha/beta pepti 33.7 72 0.0025 23.6 4.7 29 710-738 3-31 (34)
354 1fxk_A Prefoldin; archaeal pro 33.7 2.7E+02 0.0091 25.1 11.9 82 766-850 3-102 (107)
355 2jne_A Hypothetical protein YF 33.7 9.8 0.00034 34.9 0.3 39 1053-1096 32-73 (101)
356 3upu_A ATP-dependent DNA helic 33.5 19 0.00063 41.9 2.8 37 151-192 27-63 (459)
357 2w83_C C-JUN-amino-terminal ki 33.5 2.5E+02 0.0084 24.6 9.1 26 774-799 33-58 (77)
358 3b85_A Phosphate starvation-in 33.4 18 0.00062 37.5 2.4 26 164-191 14-39 (208)
359 2w0m_A SSO2452; RECA, SSPF, un 33.4 15 0.00051 37.4 1.8 29 164-192 10-41 (235)
360 3c3g_A Alpha/beta peptide with 33.4 74 0.0025 23.4 4.7 29 710-738 2-30 (33)
361 2zqm_A Prefoldin beta subunit 33.2 2.9E+02 0.0098 25.3 11.2 30 709-738 14-43 (117)
362 3m48_A General control protein 33.0 50 0.0017 24.3 3.8 27 816-842 3-29 (33)
363 1c4o_A DNA nucleotide excision 33.0 22 0.00076 43.5 3.4 83 142-230 2-92 (664)
364 1gs9_A Apolipoprotein E, APOE4 32.8 3.8E+02 0.013 26.7 12.1 20 650-669 55-75 (165)
365 2fwr_A DNA repair protein RAD2 32.7 16 0.00056 42.0 2.1 23 167-191 103-125 (472)
366 2gk6_A Regulator of nonsense t 32.6 16 0.00056 44.3 2.2 25 166-192 189-213 (624)
367 3pwf_A Rubrerythrin; non heme 32.6 40 0.0014 34.0 4.7 15 1085-1099 154-168 (170)
368 3a7o_A Autophagy protein 16; c 32.5 1.6E+02 0.0053 25.4 7.3 60 605-669 9-69 (75)
369 1ci6_A Transcription factor AT 32.5 1.5E+02 0.0052 24.8 7.5 23 777-799 22-44 (63)
370 4gl2_A Interferon-induced heli 32.5 16 0.00055 44.4 2.1 25 165-191 15-39 (699)
371 3mov_A Lamin-B1; LMNB1, B-type 32.3 2.3E+02 0.0079 25.8 9.3 27 773-799 39-65 (95)
372 2lw1_A ABC transporter ATP-bin 32.2 1.6E+02 0.0056 26.2 8.3 26 713-738 20-45 (89)
373 2yy0_A C-MYC-binding protein; 31.7 67 0.0023 26.2 4.9 31 708-738 19-49 (53)
374 3sqw_A ATP-dependent RNA helic 31.6 21 0.0007 42.7 2.8 27 165-191 51-77 (579)
375 1uo4_A General control protein 31.6 55 0.0019 24.2 3.8 29 815-843 3-31 (34)
376 3c8u_A Fructokinase; YP_612366 31.3 23 0.00079 36.1 2.8 29 163-191 9-39 (208)
377 3nbx_X ATPase RAVA; AAA+ ATPas 31.2 18 0.00063 42.8 2.2 25 165-191 34-58 (500)
378 1wp9_A ATP-dependent RNA helic 30.9 18 0.00061 40.9 2.0 24 166-192 18-41 (494)
379 3nw0_A Non-structural maintena 30.7 24 0.00081 37.7 2.8 46 1053-1099 180-232 (238)
380 3b9q_A Chloroplast SRP recepto 30.6 24 0.00081 38.9 2.8 16 176-191 102-117 (302)
381 1lwu_C Fibrinogen gamma chain; 30.6 73 0.0025 35.5 6.8 54 685-738 3-56 (323)
382 1fmh_A General control protein 30.6 76 0.0026 22.5 4.3 28 709-736 2-29 (33)
383 3lw7_A Adenylate kinase relate 30.3 14 0.00048 35.6 0.8 16 176-191 3-18 (179)
384 3m48_A General control protein 30.3 51 0.0017 24.3 3.5 28 711-738 3-30 (33)
385 3c3f_A Alpha/beta peptide with 30.3 89 0.0031 23.1 4.7 29 710-738 3-31 (34)
386 4a74_A DNA repair and recombin 30.2 21 0.00071 36.4 2.2 28 164-191 12-42 (231)
387 2qag_C Septin-7; cell cycle, c 30.2 13 0.00046 42.9 0.8 23 169-191 26-48 (418)
388 4gp7_A Metallophosphoesterase; 30.2 14 0.00047 36.7 0.8 17 176-192 11-27 (171)
389 1ypw_A Transitional endoplasmi 30.1 18 0.00063 45.3 2.0 52 140-191 199-255 (806)
390 1rz3_A Hypothetical protein rb 30.0 25 0.00085 35.7 2.7 18 174-191 22-39 (201)
391 1kd8_B GABH BLL, GCN4 acid bas 30.0 93 0.0032 23.3 4.8 29 816-844 4-32 (36)
392 3he5_A Synzip1; heterodimeric 29.9 1.7E+02 0.0057 22.4 6.4 40 782-821 7-46 (49)
393 1sxj_A Activator 1 95 kDa subu 29.7 19 0.00065 42.5 2.0 19 174-192 77-95 (516)
394 4ag6_A VIRB4 ATPase, type IV s 29.5 13 0.00045 42.0 0.6 18 175-192 36-53 (392)
395 3oja_A Leucine-rich immune mol 29.5 6.9E+02 0.023 28.6 19.9 7 725-731 384-390 (487)
396 2xnx_M M protein, M1-BC1; cell 29.4 3.8E+02 0.013 26.3 10.6 18 778-795 33-50 (146)
397 3c3f_A Alpha/beta peptide with 29.4 85 0.0029 23.2 4.5 28 816-843 4-31 (34)
398 2r8r_A Sensor protein; KDPD, P 29.3 14 0.00046 39.4 0.5 19 174-192 6-24 (228)
399 1x8y_A Lamin A/C; structural p 29.2 3E+02 0.01 24.4 10.0 24 776-799 33-56 (86)
400 3m9b_A Proteasome-associated A 28.8 66 0.0023 34.5 5.7 21 814-834 76-96 (251)
401 2ykg_A Probable ATP-dependent 28.8 22 0.00074 43.3 2.3 24 166-191 22-45 (696)
402 2oxj_A Hybrid alpha/beta pepti 28.7 79 0.0027 23.4 4.2 28 816-843 4-31 (34)
403 3tau_A Guanylate kinase, GMP k 28.7 17 0.00058 37.2 1.2 17 175-191 9-25 (208)
404 2qnr_A Septin-2, protein NEDD5 28.5 14 0.00049 40.5 0.6 24 168-191 12-35 (301)
405 2r2v_A GCN4 leucine zipper; co 28.5 95 0.0032 23.0 4.6 29 815-843 3-31 (34)
406 3pxi_A Negative regulator of g 28.5 29 0.00098 43.0 3.4 43 142-192 177-219 (758)
407 2i1j_A Moesin; FERM, coiled-co 28.4 24 0.00081 42.6 2.6 71 773-843 379-449 (575)
408 2wq1_A General control protein 28.1 88 0.003 23.0 4.4 28 815-842 2-29 (33)
409 1uii_A Geminin; human, DNA rep 27.9 97 0.0033 27.6 5.6 30 770-799 45-74 (83)
410 3iox_A AGI/II, PA; alpha helix 27.9 7.9E+02 0.027 28.8 16.0 26 822-847 82-107 (497)
411 1e9r_A Conjugal transfer prote 27.8 14 0.00047 42.5 0.3 18 174-191 53-70 (437)
412 3tr0_A Guanylate kinase, GMP k 27.8 16 0.00055 36.7 0.8 16 176-191 9-24 (205)
413 3cve_A Homer protein homolog 1 27.6 3E+02 0.01 23.9 9.8 56 770-825 13-68 (72)
414 3lfu_A DNA helicase II; SF1 he 27.6 18 0.00062 43.6 1.3 21 172-192 20-40 (647)
415 2dr3_A UPF0273 protein PH0284; 27.4 21 0.00072 36.8 1.7 27 166-192 12-41 (247)
416 3sop_A Neuronal-specific septi 27.3 16 0.00056 39.5 0.8 19 173-191 1-19 (270)
417 3m91_A Proteasome-associated A 27.0 1.6E+02 0.0054 23.9 6.3 36 813-848 9-44 (51)
418 3e70_C DPA, signal recognition 27.0 33 0.0011 38.3 3.2 17 175-191 130-146 (328)
419 1r6b_X CLPA protein; AAA+, N-t 27.0 26 0.0009 43.3 2.7 28 165-192 198-225 (758)
420 1kd8_B GABH BLL, GCN4 acid bas 26.9 1.1E+02 0.0037 23.0 4.7 29 710-738 3-31 (36)
421 3onj_A T-snare VTI1; helix, HA 26.9 3.6E+02 0.012 24.4 10.7 31 704-734 30-60 (97)
422 2dgc_A Protein (GCN4); basic d 26.9 65 0.0022 27.2 4.3 31 708-738 30-60 (63)
423 1kgd_A CASK, peripheral plasma 26.6 17 0.00058 36.3 0.7 16 176-191 7-22 (180)
424 3pxi_A Negative regulator of g 26.6 27 0.00092 43.3 2.7 16 176-191 523-538 (758)
425 2a26_A Calcyclin-binding prote 26.5 99 0.0034 25.0 5.0 43 620-667 6-48 (50)
426 1wlq_A Geminin; coiled-coil; 2 26.5 1.2E+02 0.0043 26.9 6.0 47 753-799 16-66 (83)
427 2jlq_A Serine protease subunit 26.5 19 0.00065 41.7 1.2 25 166-191 12-36 (451)
428 2bni_A General control protein 26.4 75 0.0026 23.5 3.8 29 815-843 3-31 (34)
429 3a00_A Guanylate kinase, GMP k 26.3 17 0.00057 36.5 0.6 15 177-191 4-18 (186)
430 1qvr_A CLPB protein; coiled co 26.2 33 0.0011 43.2 3.4 17 175-191 589-605 (854)
431 2wt7_A Proto-oncogene protein 26.2 1.4E+02 0.0049 24.9 6.3 39 777-836 22-60 (63)
432 2hy6_A General control protein 26.1 89 0.003 23.1 4.1 28 815-842 3-30 (34)
433 3e1s_A Exodeoxyribonuclease V, 26.0 25 0.00085 42.4 2.1 26 165-192 197-222 (574)
434 1fxk_A Prefoldin; archaeal pro 25.8 3.4E+02 0.012 24.4 9.5 30 709-738 9-38 (107)
435 1r6b_X CLPA protein; AAA+, N-t 25.7 30 0.001 42.7 2.9 17 175-191 489-505 (758)
436 2xzl_A ATP-dependent helicase 25.7 24 0.00084 44.2 2.0 25 166-192 369-393 (802)
437 2vrw_B P95VAV, VAV1, proto-onc 25.6 30 0.001 39.3 2.7 64 1026-1090 325-398 (406)
438 2wjy_A Regulator of nonsense t 25.5 26 0.00087 44.0 2.2 25 166-192 365-389 (800)
439 4a4z_A Antiviral helicase SKI2 25.2 30 0.001 44.6 2.7 23 166-190 48-70 (997)
440 1zp6_A Hypothetical protein AT 25.1 18 0.00063 35.9 0.7 17 175-191 10-26 (191)
441 2og2_A Putative signal recogni 25.0 35 0.0012 38.6 3.0 16 176-191 159-174 (359)
442 3trf_A Shikimate kinase, SK; a 25.0 21 0.0007 35.4 1.0 15 176-190 7-21 (185)
443 1lvg_A Guanylate kinase, GMP k 24.9 18 0.00061 36.9 0.5 16 176-191 6-21 (198)
444 2zuo_A MVP, major vault protei 24.9 1.1E+03 0.038 29.4 19.0 59 772-835 698-756 (861)
445 1ly1_A Polynucleotide kinase; 24.7 21 0.00072 34.8 1.0 15 176-190 4-18 (181)
446 2k0a_A PRE-mRNA-splicing facto 24.7 20 0.00067 33.2 0.7 34 1055-1093 31-66 (109)
447 2b8t_A Thymidine kinase; deoxy 24.6 16 0.00056 38.5 0.1 19 175-193 13-31 (223)
448 1ye8_A Protein THEP1, hypothet 24.5 19 0.00063 36.4 0.5 15 177-191 3-17 (178)
449 2oca_A DAR protein, ATP-depend 24.5 23 0.00077 41.3 1.4 23 168-192 124-146 (510)
450 2orw_A Thymidine kinase; TMTK, 24.4 14 0.00048 37.5 -0.4 17 176-192 5-21 (184)
451 3ky9_A Proto-oncogene VAV; cal 24.2 18 0.00063 43.5 0.5 53 1026-1082 497-554 (587)
452 3iij_A Coilin-interacting nucl 24.1 21 0.0007 35.3 0.8 17 175-191 12-28 (180)
453 1uo4_A General control protein 24.0 82 0.0028 23.3 3.6 29 710-738 3-31 (34)
454 1gk4_A Vimentin; intermediate 24.0 3.7E+02 0.013 23.6 12.3 47 773-840 28-74 (84)
455 1qhx_A CPT, protein (chloramph 24.0 22 0.00076 34.8 1.0 17 175-191 4-20 (178)
456 1x8y_A Lamin A/C; structural p 23.8 3.8E+02 0.013 23.7 9.6 23 774-796 52-74 (86)
457 2wvr_A Geminin; DNA replicatio 23.7 1.7E+02 0.006 30.1 7.4 30 770-799 114-143 (209)
458 1rj9_A FTSY, signal recognitio 23.6 23 0.00079 39.0 1.1 17 175-191 103-119 (304)
459 3r2p_A Apolipoprotein A-I; amp 23.6 4.7E+02 0.016 26.2 11.0 12 727-738 109-120 (185)
460 4a2q_A RIG-I, retinoic acid in 23.5 31 0.0011 43.0 2.4 24 166-191 257-280 (797)
461 2no2_A HIP-I, huntingtin-inter 23.4 4.5E+02 0.015 24.4 12.5 25 712-736 19-43 (107)
462 4a2w_A RIG-I, retinoic acid in 23.3 30 0.001 44.1 2.2 24 166-191 257-280 (936)
463 1j8m_F SRP54, signal recogniti 23.1 54 0.0018 35.9 4.0 17 176-192 100-116 (297)
464 2wq1_A General control protein 23.0 1.5E+02 0.005 21.9 4.7 29 710-738 2-30 (33)
465 3sja_C Golgi to ER traffic pro 22.9 3.5E+02 0.012 23.0 7.9 51 722-795 6-56 (65)
466 2q6q_A Spindle POLE BODY compo 22.9 3.6E+02 0.012 23.1 8.8 30 709-738 4-33 (74)
467 2yy0_A C-MYC-binding protein; 22.9 1.1E+02 0.0037 25.0 4.7 29 771-799 19-47 (53)
468 2ga8_A Hypothetical 39.9 kDa p 22.9 43 0.0015 37.9 3.1 21 171-191 21-41 (359)
469 1m1j_C Fibrinogen gamma chain; 22.8 4.1E+02 0.014 30.5 11.3 17 715-731 48-64 (409)
470 1lkx_A Myosin IE heavy chain; 22.8 39 0.0013 41.7 3.0 35 156-191 76-111 (697)
471 3lnc_A Guanylate kinase, GMP k 22.8 26 0.00089 36.3 1.3 16 176-191 29-44 (231)
472 1gm5_A RECG; helicase, replica 22.7 30 0.001 43.2 2.1 21 171-191 386-406 (780)
473 2j41_A Guanylate kinase; GMP, 22.7 23 0.00078 35.5 0.8 16 176-191 8-23 (207)
474 2l7b_A Apolipoprotein E, APO-E 22.6 4.9E+02 0.017 28.6 11.6 54 685-738 112-167 (307)
475 3k8w_A Flagellin homolog; flag 22.6 4.9E+02 0.017 28.9 11.4 78 757-834 25-108 (326)
476 2b9c_A Striated-muscle alpha t 22.5 5.5E+02 0.019 25.1 11.5 77 774-850 34-110 (147)
477 2px0_A Flagellar biosynthesis 22.4 22 0.00075 39.0 0.6 18 175-192 106-123 (296)
478 2bdt_A BH3686; alpha-beta prot 22.3 23 0.00079 35.2 0.7 16 176-191 4-19 (189)
479 3iv1_A Tumor susceptibility ge 22.3 4E+02 0.014 23.4 9.1 53 767-833 21-73 (78)
480 3q8t_A Beclin-1; autophagy, AT 22.3 4.4E+02 0.015 23.9 13.8 91 694-826 4-94 (96)
481 2zxx_A Geminin; coiled-coil, c 22.3 4.1E+02 0.014 23.5 8.6 37 753-799 12-48 (79)
482 2w6a_A ARF GTPase-activating p 22.2 2E+02 0.0067 24.0 5.9 36 777-833 26-61 (63)
483 1uaa_A REP helicase, protein ( 22.2 26 0.00089 42.7 1.3 20 173-192 14-33 (673)
484 2qen_A Walker-type ATPase; unk 22.2 34 0.0012 37.0 2.2 18 175-192 32-49 (350)
485 1oyw_A RECQ helicase, ATP-depe 22.2 20 0.00069 42.4 0.3 25 165-191 33-57 (523)
486 2ehv_A Hypothetical protein PH 22.2 23 0.00079 36.6 0.7 17 176-192 32-48 (251)
487 2oqq_A Transcription factor HY 22.1 2.5E+02 0.0086 21.8 6.1 17 820-836 24-40 (42)
488 1z60_A TFIIH basal transcripti 22.0 35 0.0012 28.5 1.7 35 1055-1090 17-58 (59)
489 2v6i_A RNA helicase; membrane, 21.9 31 0.001 39.7 1.7 16 176-191 4-19 (431)
490 1odf_A YGR205W, hypothetical 3 21.7 50 0.0017 36.0 3.3 37 155-191 10-48 (290)
491 3ghg_C Fibrinogen gamma chain; 21.7 7.1E+02 0.024 28.5 12.8 47 692-738 89-135 (411)
492 3c9i_A Tail needle protein GP2 21.7 2.5E+02 0.0084 29.0 8.0 55 684-738 81-135 (242)
493 3kta_A Chromosome segregation 21.6 24 0.00082 34.8 0.7 16 176-191 28-43 (182)
494 1w9i_A Myosin II heavy chain; 21.6 43 0.0015 41.8 3.0 35 156-191 154-189 (770)
495 2gza_A Type IV secretion syste 21.4 23 0.00078 39.9 0.5 21 169-191 172-192 (361)
496 2pt7_A CAG-ALFA; ATPase, prote 21.4 23 0.00078 39.5 0.5 21 169-191 168-188 (330)
497 2k48_A Nucleoprotein; viral pr 21.3 2.5E+02 0.0086 26.0 7.2 69 605-673 33-102 (107)
498 3kl4_A SRP54, signal recogniti 21.3 61 0.0021 37.6 4.1 43 149-191 62-114 (433)
499 1wle_A Seryl-tRNA synthetase; 21.2 7.2E+02 0.025 29.2 13.3 108 599-734 33-149 (501)
500 1g6u_A Domain swapped dimer; d 21.1 1.2E+02 0.004 23.2 4.1 27 715-741 20-46 (48)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.4e-88 Score=776.59 Aligned_cols=343 Identities=41% Similarity=0.633 Sum_probs=292.6
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeC----CCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYAD----GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~----~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1102)
..+++|+|+||+||++++|...+...++..+ ...+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 4578999999999999999887766544433 2344332 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcC-CCceeEEEeehhhhhcceeeecCCCCCCcceEE
Q 001316 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR 248 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ir 248 (1102)
||+||||||||||||||||+|+.. .+|||||++++||..+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 999999999999999999999654 5699999999999999764 456899999999999999999999998899999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCC
Q 001316 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327 (1102)
Q Consensus 249 e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAG 327 (1102)
+++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+||||||
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAG 241 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN--QKKLSGKLYLVDLAG 241 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT--CCEEEEEEEEEECCC
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC--CCEeEEEEEEEECCC
Confidence 998 57899999999999999999999999999999999999999999999999999876433 346789999999999
Q ss_pred CCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHH
Q 001316 328 SES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1102)
Q Consensus 328 SEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETl 406 (1102)
||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||+
T Consensus 242 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl 321 (365)
T 2y65_A 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETK 321 (365)
T ss_dssp CCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHH
Confidence 999 5689999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHH
Q 001316 407 NTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLK 445 (1102)
Q Consensus 407 sTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk 445 (1102)
+||+||+|||+|+|.|.+|+..+.+.++++|++|+..|+
T Consensus 322 ~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 322 STLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888887665
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.4e-87 Score=768.77 Aligned_cols=342 Identities=34% Similarity=0.537 Sum_probs=305.1
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEec-CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRN-EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~-~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N 174 (1102)
+.+++|+|+||+||++++|...+..+.+..++. ++... .....+.|.||+||+++++|++||+. +.|+|+++|+|||
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 457899999999999999987776655554444 33322 22344789999999999999999998 6899999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCC-ceeEEEeehhhhhcceeeecCCCCC---CcceEEeC
Q 001316 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~-~~~~v~vS~lEIYnE~i~DLL~~~~---~~l~ire~ 250 (1102)
+||||||||||||||||+|++.++|||||++++||..+..... ..|.|+|||+|||||+|+|||+|.. ..+.|+++
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~ 160 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEEC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEEC
Confidence 9999999999999999999999999999999999999987654 5899999999999999999999753 57999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCC
Q 001316 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1102)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1102)
+ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++..... .....|+|+||||||||
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSE 238 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIARGKLSFVDLAGSE 238 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSS
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC--CcEEEEEEEEEeCCCCC
Confidence 8 56899999999999999999999999999999999999999999999999999876543 45678999999999999
Q ss_pred C-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 330 r-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 239 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~T 317 (369)
T 3cob_A 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317 (369)
T ss_dssp CCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHH
Confidence 9 5689999999999999999999999999999875 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 452 (1102)
Q Consensus 409 LrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~~~~ 452 (1102)
|+||+|||+|+|.|.+|... ++|..|+.+|..++
T Consensus 318 LrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~ 351 (369)
T 3cob_A 318 LTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWK 351 (369)
T ss_dssp HHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC-
T ss_pred HHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHH
Confidence 99999999999999999864 45666666665544
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=4.5e-87 Score=764.50 Aligned_cols=342 Identities=39% Similarity=0.611 Sum_probs=287.2
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecCC-----CCCcceeeceecCCCCChhHHHhhhhHHHHHH
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~~-----~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~ 168 (1102)
....++|+|+||+||++++|...+...++. .+...+.+... ...+.|.||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 456789999999999999998777654443 33445544322 23568999999999999999999999999999
Q ss_pred HhcCCceeEEeeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC-Cc
Q 001316 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QN 244 (1102)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~ 244 (1102)
+|+|||+||||||||||||||||+|... .+|||||++++||..+...++..|.|+|||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 9999999999999999999999999754 5699999999999999988888999999999999999999999864 67
Q ss_pred ceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC-CCCcEEEEEEEE
Q 001316 245 LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNL 322 (1102)
Q Consensus 245 l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~~~~~~~skL~l 322 (1102)
+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+....+. ....+..|+|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~l 256 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNL 256 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEE
Confidence 9999998 57899999999999999999999999999999999999999999999999999876432 224567899999
Q ss_pred eecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCC
Q 001316 323 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS 401 (1102)
Q Consensus 323 VDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~ 401 (1102)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 257 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp EECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999 56899999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccccCHHHHHHHHH
Q 001316 402 MEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQ 438 (1102)
Q Consensus 402 ~~ETlsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~ 438 (1102)
++||++||+||+|||+|+|+|.+|+... ..++++|+
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~~~~-~~~~~~~~ 372 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNEDPK-DALLREFQ 372 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred HHHHHHHHHHHHHHhhccccceecCChH-HHHHHhcC
Confidence 9999999999999999999999998543 35665553
No 4
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=9.4e-87 Score=757.72 Aligned_cols=329 Identities=39% Similarity=0.620 Sum_probs=272.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecC----------CCCCcceeeceecCCCCChhHHHhhhhHHHH
Q 001316 99 GDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNE----------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~----------~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV 166 (1102)
.++|+|+||+||++++|...+...++. .+...+.+.. ....+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 579999999999999998777644333 3344444332 1235689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc-CCCceeEEEeehhhhhcceeeecCCCCCCcc
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l 245 (1102)
+++|+|||+||||||||||||||||+|+..++|||||++++||+.+.. ..+..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 999999999999999999999999999999999999999999999984 45679999999999999999999984 4579
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEee
Q 001316 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1102)
Q Consensus 246 ~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1102)
.|++++ .|+||.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|++............|+|+|||
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVD 241 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEe
Confidence 999998 6789999999999999999999999999999999999999999999999999987665444556789999999
Q ss_pred cCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHH
Q 001316 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1102)
Q Consensus 325 LAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ 403 (1102)
|||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 242 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 999999 5689999999999999999999999999999976 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccC
Q 001316 404 ETHNTLKFASRAKRVEIYASRNKIID 429 (1102)
Q Consensus 404 ETlsTLrfA~rak~I~~~~~~n~~~~ 429 (1102)
||++||+||+|||+|+|+|.+|+..+
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999998644
No 5
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.7e-86 Score=757.50 Aligned_cols=333 Identities=40% Similarity=0.621 Sum_probs=304.8
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
...++|+|+||+||+++.|...+...++ ..++.++........+.|.||+||+++++|++||+.++.|+|+++|+|||+
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 82 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNG 82 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCE
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcc
Confidence 3468999999999999999877765444 344455555555566789999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCC----CCCCCchhhHHHHHHHHhhcC-CCceeEEEeehhhhhcceeeecCCCCCCcceEEeC
Q 001316 176 TVFAYGVTSSGKTHTMHGD----QNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRED 250 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~----~~~~GIipr~~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~ 250 (1102)
||||||||||||||||+|+ +..+|||||++++||..|... .+..|.|+|||+|||||+|+|||+|....+.|+++
T Consensus 83 tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~ 162 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEE 162 (355)
T ss_dssp EEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEE
T ss_pred eEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEc
Confidence 9999999999999999996 466899999999999999764 35689999999999999999999999889999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCC
Q 001316 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1102)
Q Consensus 251 ~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSE 329 (1102)
+ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... +....|+|+||||||||
T Consensus 163 ~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSE 240 (355)
T 1goj_A 163 KNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET--GSAKSGQLFLVDLAGSE 240 (355)
T ss_dssp TTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT--TEEEEEEEEEEECCCCS
T ss_pred CCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC--CceeeeEEEEEECCCCC
Confidence 8 67999999999999999999999999999999999999999999999999999876433 45678999999999999
Q ss_pred C-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 330 r-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 241 r~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~T 320 (355)
T 1goj_A 241 KVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLST 320 (355)
T ss_dssp CCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHH
Confidence 9 568999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccCHH
Q 001316 409 LKFASRAKRVEIYASRNKIIDEK 431 (1102)
Q Consensus 409 LrfA~rak~I~~~~~~n~~~~~~ 431 (1102)
|+||+|||+|+|+|.+|+..+..
T Consensus 321 L~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 321 LRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHHhhccCCceeCCCCCHH
Confidence 99999999999999999876653
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-87 Score=766.94 Aligned_cols=347 Identities=34% Similarity=0.525 Sum_probs=256.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCe-EEEeeCCCEEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~---~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
....++|+|+|||||++++|...+.. ++...++..+.+.. ......|.||+||+++++|++||+.++.|+|+++|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 45678999999999999999765443 33334444433222 123467999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc----CCCceeEEEeehhhhhcceeeecCCCCCCcceE
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD----TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~----~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~i 247 (1102)
|||+||||||||||||||||+|+++++|||||++.+||..+.. .....|.|+|||+|||||+|+|||+|....+.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 9999999999999999999999999999999999999999974 345689999999999999999999999889999
Q ss_pred EeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecC
Q 001316 248 REDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLA 326 (1102)
Q Consensus 248 re~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLA 326 (1102)
++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|++...... .....|+|+|||||
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~skL~lVDLA 255 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP-FRQREGKLYLIDLA 255 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-CCEEEEEEEEEECC
T ss_pred EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-CceeEEEEEEEECC
Confidence 9998 578999999999999999999999999999999999999999999999999998764432 34578999999999
Q ss_pred CCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHH
Q 001316 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1102)
Q Consensus 327 GSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ET 405 (1102)
|||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ET 334 (388)
T 3bfn_A 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334 (388)
T ss_dssp CTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHH
T ss_pred CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHH
Confidence 9999 5689999999999999999999999999999876 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001316 406 HNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELD 449 (1102)
Q Consensus 406 lsTLrfA~rak~I~~~~~~n~~~~~~~~i~~~~~ei~~Lk~el~ 449 (1102)
++||+||+|||+|+|+|.+|+..+...+. ++..++++|.
T Consensus 335 lsTLrfA~rak~I~n~p~~n~~~~~~~l~-----~~k~~~~~l~ 373 (388)
T 3bfn_A 335 VSALNFAARSKEVINRPFTNESLQPHALG-----PVKLSQKELL 373 (388)
T ss_dssp HHHHHHHCSEEEEC------------------------------
T ss_pred HHHHHHHHHHhhCcCcCcccCCCCHHHHH-----HHHHHHHHhh
Confidence 99999999999999999999987775442 3344445554
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.4e-87 Score=758.10 Aligned_cols=328 Identities=46% Similarity=0.762 Sum_probs=291.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCe--EEEeeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001316 99 GDSISVTIRFRPLSEREFQRGDE--IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~--~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~t 176 (1102)
.++|+|+||+||++++|...+.. +.|..++..+... ...+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 68999999999999999765543 4455666665543 3457899999999999999999999999999999999999
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCCC--CcceEEeCC-CC
Q 001316 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDA-QG 253 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~~--~~l~ire~~-~g 253 (1102)
|||||||||||||||+|+++++|||||++++||..++..++..|.|+|||+|||||+|+|||++.. .+|.|++++ .|
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999999999999999999999999998889999999999999999999998753 579999998 57
Q ss_pred cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC---CCcEEEEEEEEeecCCCCC
Q 001316 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE---YDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 254 ~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~---~~~~~~skL~lVDLAGSEr 330 (1102)
++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...... .+.+..|+|+|||||||||
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 240 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER 240 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc
Confidence 8999999999999999999999999999999999999999999999999998765432 2356789999999999999
Q ss_pred -cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCC-CCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHH
Q 001316 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1102)
Q Consensus 331 -~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k-~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsT 408 (1102)
.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||||+|+ +++||++|
T Consensus 241 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsT 318 (349)
T 1t5c_A 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTA 318 (349)
T ss_dssp TC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHH
T ss_pred ccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHH
Confidence 5689999999999999999999999999999875 3699999999999999999999999999999996 58999999
Q ss_pred HHHHHHhcccccccccccccCH
Q 001316 409 LKFASRAKRVEIYASRNKIIDE 430 (1102)
Q Consensus 409 LrfA~rak~I~~~~~~n~~~~~ 430 (1102)
|+||+|||+|+|.|.+|+..+.
T Consensus 319 L~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 319 LQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHhhcccCceeccCCCC
Confidence 9999999999999999987654
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3e-86 Score=774.00 Aligned_cols=330 Identities=38% Similarity=0.606 Sum_probs=278.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEecC----------------CCCCcceeeceecCCC------
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE----------------YNPATAYAFDRVFGPH------ 151 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~~----------------~~~~~~f~FD~VF~~~------ 151 (1102)
.+.+++|+|+|||||++++|...+..+++..++. .+.+.. ....+.|+||+|||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 4567899999999999999988877666554432 222111 1135789999999864
Q ss_pred -CChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC----CCceeEEEeeh
Q 001316 152 -ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT----PGREFLLRVSY 226 (1102)
Q Consensus 152 -~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~----~~~~~~v~vS~ 226 (1102)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..|... ++..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999754 46799999999
Q ss_pred hhhhcceeeecCCCC-----CCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEE
Q 001316 227 LEIYNEVINDLLDPT-----GQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1102)
Q Consensus 227 lEIYnE~i~DLL~~~-----~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~ 300 (1102)
+|||||+|+|||+|. ...|.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999873 2359999998 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCC--CCCcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCC------------
Q 001316 301 LMIESSDHGD--EYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA------------ 365 (1102)
Q Consensus 301 i~v~~~~~~~--~~~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~------------ 365 (1102)
|.|++..... .......|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 9998865321 22346789999999999999 56899999999999999999999999999987542
Q ss_pred ---------CCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001316 366 ---------SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1102)
Q Consensus 366 ---------~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~ 427 (1102)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|.+|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999996 599999999999999999999999984
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.6e-85 Score=752.87 Aligned_cols=329 Identities=39% Similarity=0.611 Sum_probs=280.0
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----CCCcceeeceecCCC--------CChhHHHhhhhHHHH
Q 001316 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----NPATAYAFDRVFGPH--------ANSQEVYDVAARPVV 166 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----~~~~~f~FD~VF~~~--------~~q~~Vy~~~~~plV 166 (1102)
.++|+|+||+||++++|...+..+++..++..+.+... ...+.|.||+|||++ ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999999888777777666665544322 235689999999987 899999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCC--CCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCCCCC
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG 242 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~--~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~ 242 (1102)
+++|+|||+||||||||||||||||+|+. .++|||||++++||..|... .+..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999999865 346899999999999999999999864
Q ss_pred -CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCC--CcEEEE
Q 001316 243 -QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFS 318 (1102)
Q Consensus 243 -~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~--~~~~~s 318 (1102)
..|.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++....... .....|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 579999998 6899999999999999999999999999999999999999999999999999886543322 345689
Q ss_pred EEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC-----------CCCCccCCCCcchhhhhccCCCC
Q 001316 319 QLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----------KASHVPYRDSKLTRLLQSSLSGH 386 (1102)
Q Consensus 319 kL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~-----------k~~hvPYRdSkLTrLLqdsLgGn 386 (1102)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 568999999999999999999999999999873 35699999999999999999999
Q ss_pred ccceEEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001316 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1102)
Q Consensus 387 skt~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~ 427 (1102)
|+|+|||||||+..+++||++||+||+|||+|+|.|.++..
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~~ 363 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC-----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 99999999999999999999999999999999999988753
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.3e-85 Score=739.35 Aligned_cols=315 Identities=44% Similarity=0.690 Sum_probs=289.1
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~ 175 (1102)
..+++|+|+||+||++++|...+...++ ..++.++... .+.|.||+||+++++|++||+.+++|+|+++|+|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 3478999999999999999887765443 4455555543 3689999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCC---CCchhhHHHHHHHHhhc-CCCceeEEEeehhhhhcceeeecCCCCCCcceEEeCC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~---~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~ire~~ 251 (1102)
||||||||||||||||+|+..+ +|||||++++||+.|.. .++..|.|+|||+|||||+|+|||++....+.|++++
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~ 159 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK 159 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence 9999999999999999997544 59999999999999975 4567999999999999999999999998999999998
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCCCC
Q 001316 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1102)
Q Consensus 252 -~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr 330 (1102)
.|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++..... .....|+|+|||||||||
T Consensus 160 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skl~lVDLAGSEr 237 (325)
T 1bg2_A 160 NRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT--EQKLSGKLYLVDLAGSEK 237 (325)
T ss_dssp TSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSCC
T ss_pred CCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--CcEEEEEEEEEECCCCCc
Confidence 57899999999999999999999999999999999999999999999999999876543 346789999999999999
Q ss_pred -cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHH
Q 001316 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1102)
Q Consensus 331 -~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTL 409 (1102)
.++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++||
T Consensus 238 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL 316 (325)
T 1bg2_A 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTL 316 (325)
T ss_dssp CCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred ccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHH
Confidence 5689999999999999999999999999999874 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 001316 410 KFASRAKRV 418 (1102)
Q Consensus 410 rfA~rak~I 418 (1102)
+||+|||+|
T Consensus 317 ~fa~rak~I 325 (325)
T 1bg2_A 317 LFGQRAKTI 325 (325)
T ss_dssp HHHHTSCCC
T ss_pred HHHHHhccC
Confidence 999999987
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.5e-85 Score=745.72 Aligned_cols=322 Identities=37% Similarity=0.593 Sum_probs=259.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecC---------------------CCCCcceeeceecCCCCC
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNE---------------------YNPATAYAFDRVFGPHAN 153 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~---------------------~~~~~~f~FD~VF~~~~~ 153 (1102)
.+..++|+|+||+||++.+|...+...++. .++..++... ......|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 456789999999999999998877654433 3333333221 123457999999999999
Q ss_pred hhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcCC-CceeEEEeehhhhhcc
Q 001316 154 SQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNE 232 (1102)
Q Consensus 154 q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~~-~~~~~v~vS~lEIYnE 232 (1102)
|++||+.++.|+|+++|+|||+||||||||||||||||+|+..++|||||++++||..+.... ...|.|.|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998654 4689999999999999
Q ss_pred eeeecCCCCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC
Q 001316 233 VINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE 311 (1102)
Q Consensus 233 ~i~DLL~~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~ 311 (1102)
+|+|||++. .++.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 479999998 689999999999999999999999999999999999999999999999999998764432
Q ss_pred -CCcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCC--CCCccCCCCcchhhhhccCCCCc
Q 001316 312 -YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHG 387 (1102)
Q Consensus 312 -~~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k--~~hvPYRdSkLTrLLqdsLgGns 387 (1102)
...+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 2345679999999999999 5789999999999999999999999999999854 46999999999999999999999
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001316 388 HVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 388 kt~~I~~isP~~~~~~ETlsTLrfA~rak~I 418 (1102)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=3e-85 Score=748.87 Aligned_cols=328 Identities=37% Similarity=0.602 Sum_probs=275.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEec-----CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRN-----EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~-----~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
..+++|+|+||+||++++|...+...++. ++...+.+. .....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 45789999999999999998776654433 333333321 11234689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCC-----------CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecC
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL 238 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL 238 (1102)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999999764 369999999999999975 56799999999999999999999
Q ss_pred CCCC---CcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC-C
Q 001316 239 DPTG---QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1102)
Q Consensus 239 ~~~~---~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~-~ 311 (1102)
+|.. ..+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+...... .
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 243 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence 9864 469999997 47899999999999999999999999999999999999999999999999998765322 2
Q ss_pred CCcEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccce
Q 001316 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1102)
Q Consensus 312 ~~~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~ 390 (1102)
...+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+
T Consensus 244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEE
Confidence 2345789999999999999 5689999999999999999999999999999864 6999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001316 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1102)
Q Consensus 391 ~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~ 426 (1102)
|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999986
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-84 Score=745.87 Aligned_cols=332 Identities=39% Similarity=0.637 Sum_probs=279.0
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCe-EEEeeCCCEEEecC---CCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~---~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
....++|+|+||+||++++|...+.. ++...++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 35578999999999999999765543 33334455544332 234578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCC-----------CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP 240 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~~~-----------~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~ 240 (1102)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... +..|.|+|||+|||||+|+|||++
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 177 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLST 177 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCT
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCC
Confidence 9999999999999999999999754 6799999999999999764 468999999999999999999987
Q ss_pred CC-CcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCC-CCcE
Q 001316 241 TG-QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1102)
Q Consensus 241 ~~-~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~-~~~~ 315 (1102)
.. ..+++++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+....+.. ....
T Consensus 178 ~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 257 (373)
T 2wbe_C 178 DDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML 257 (373)
T ss_dssp TSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEE
T ss_pred CCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcce
Confidence 64 568898884 358999999999999999999999999999999999999999999999999998754332 2345
Q ss_pred EEEEEEEeecCCCCC-cccccc-hhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEE
Q 001316 316 IFSQLNLIDLAGSES-SKTETT-GLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1102)
Q Consensus 316 ~~skL~lVDLAGSEr-~kt~~~-g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~ 393 (1102)
..|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+|||
T Consensus 258 ~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa 336 (373)
T 2wbe_C 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIA 336 (373)
T ss_dssp EEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEE
T ss_pred eEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEE
Confidence 789999999999999 467776 9999999999999999999999999864 6999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Q 001316 394 TVTPASSSMEETHNTLKFASRAKRVEIYASRNKIID 429 (1102)
Q Consensus 394 ~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~~~~ 429 (1102)
||||+..+++||++||+||+|||+|+|+|.+|+...
T Consensus 337 ~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 337 TISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999998643
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.9e-84 Score=736.90 Aligned_cols=320 Identities=39% Similarity=0.631 Sum_probs=264.8
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEE--eeCCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhc
Q 001316 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAW--YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1102)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~--~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~ 171 (1102)
.+....++|+|+||+||++++|...+...++ .++...+.. ...+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp ----CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE---TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe---cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999876654333 233334443 24578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCC------CCCCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCC--CC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT--GQ 243 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~G~------~~~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~--~~ 243 (1102)
|||+||||||||||||||||+|+ .+++|||||++++||+.+...+...|.|+|||+|||||+|+|||++. ..
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 99999999999999999999997 46799999999999999998888999999999999999999999864 35
Q ss_pred cceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCC------CCCcEE
Q 001316 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EYDGVI 316 (1102)
Q Consensus 244 ~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~------~~~~~~ 316 (1102)
.+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ....+.
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 79999998 57899999999999999999999999999999999999999999999999999875321 224567
Q ss_pred EEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcC--CCCCccCCCCcchhhhhccCCCCccceEEE
Q 001316 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1102)
Q Consensus 317 ~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~--k~~hvPYRdSkLTrLLqdsLgGnskt~~I~ 393 (1102)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|||||+|+|||
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 89999999999999 568999999999999999999999999999975 346999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhc
Q 001316 394 TVTPASSSMEETHNTLKFASRAK 416 (1102)
Q Consensus 394 ~isP~~~~~~ETlsTLrfA~rak 416 (1102)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999997
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=8.4e-84 Score=735.69 Aligned_cols=318 Identities=40% Similarity=0.631 Sum_probs=263.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----------CCCcceeeceecC--------CCCChhHHHhhhh
Q 001316 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----------NPATAYAFDRVFG--------PHANSQEVYDVAA 162 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----------~~~~~f~FD~VF~--------~~~~q~~Vy~~~~ 162 (1102)
+|+|+||+||++++|...+..+++..++..++.... ...+.|.||+||| +.++|++||+.++
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~ 81 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLG 81 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhh
Confidence 799999999999999988877777777776654321 2356899999994 5678999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc--CCCceeEEEeehhhhhcceeeecCCC
Q 001316 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1102)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~~ 240 (1102)
.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+.. ..+..|.|+|||+|||||+|+|||+|
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC-
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCC
Confidence 9999999999999999999999999999999999999999999999999864 34578999999999999999999998
Q ss_pred CC--CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCC--CCCCcE
Q 001316 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEYDGV 315 (1102)
Q Consensus 241 ~~--~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~--~~~~~~ 315 (1102)
.+ ..+.|++++ .|+||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.... ......
T Consensus 162 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 241 (354)
T 3gbj_A 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241 (354)
T ss_dssp -----CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEE
T ss_pred CCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCe
Confidence 63 579999998 5899999999999999999999999999999999999999999999999999876432 222446
Q ss_pred EEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhc-----CCCCCccCCCCcchhhhhccCCCCccc
Q 001316 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGHV 389 (1102)
Q Consensus 316 ~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~-----~k~~hvPYRdSkLTrLLqdsLgGnskt 389 (1102)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+|
T Consensus 242 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (354)
T 3gbj_A 242 KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKT 321 (354)
T ss_dssp EEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEE
T ss_pred eEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeE
Confidence 789999999999999 57899999999999999999999999999986 345799999999999999999999999
Q ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001316 390 SLICTVTPASSSMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 390 ~~I~~isP~~~~~~ETlsTLrfA~rak~I 418 (1102)
+|||||||+..+++||++||+||.||+.-
T Consensus 322 ~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 322 AMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999863
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-84 Score=737.22 Aligned_cols=318 Identities=36% Similarity=0.563 Sum_probs=261.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEec-----------CCCCCcceeeceecCCCCChhHHHhhhhHHH
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRN-----------EYNPATAYAFDRVFGPHANSQEVYDVAARPV 165 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----------~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~pl 165 (1102)
..+++|+|+|||||+++.|.. .+.+..++..+.+. .......|.||+||+ +++|++||+.+++|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 457899999999999876532 22233333333321 122345799999997 589999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccCCCCC---CCCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCCCC-
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT- 241 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~---~~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~~~- 241 (1102)
|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+...++..|.|+|||+|||||+|+|||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 9999999999999999999999999999754 479999999999999999889999999999999999999999853
Q ss_pred -----CCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEE
Q 001316 242 -----GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316 (1102)
Q Consensus 242 -----~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 316 (1102)
...+.+++++.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|.............
T Consensus 177 ~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~ 256 (359)
T 3nwn_A 177 YVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYI 256 (359)
T ss_dssp TSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCE
T ss_pred ccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCcccc
Confidence 346889999999999999999999999999999999999999999999999999999999998876554445667
Q ss_pred EEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEee
Q 001316 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTV 395 (1102)
Q Consensus 317 ~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~i 395 (1102)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||
T Consensus 257 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~i 336 (359)
T 3nwn_A 257 TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNI 336 (359)
T ss_dssp EEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEE
T ss_pred cccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEe
Confidence 89999999999999 56899999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccc
Q 001316 396 TPASSSMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 396 sP~~~~~~ETlsTLrfA~rak~I 418 (1102)
||+..+++||++||+||+|||+|
T Consensus 337 sP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 337 YGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCchhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-83 Score=724.48 Aligned_cols=318 Identities=37% Similarity=0.553 Sum_probs=272.5
Q ss_pred CCCCEEEEEEeCCCChhhhhcCC---eEEEeeCC-CEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001316 98 SGDSISVTIRFRPLSEREFQRGD---EIAWYADG-DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~---~~~~~~~~-~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~ 173 (1102)
.+++|+|+||+||++++|...+. .+.+.+++ ..+........+.|.||+||+++++|++||+. +.|+|+++|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCC
Confidence 46899999999999999864322 23343333 33333333445689999999999999999997 589999999999
Q ss_pred ceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC-CCceeEEEeehhhhhcceeeecCCCCC-CcceEE--e
Q 001316 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR--E 249 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~-~~~~~~v~vS~lEIYnE~i~DLL~~~~-~~l~ir--e 249 (1102)
|+||||||||||||||||+|++.++|||||++++||..++.. ++..|.|+|||+|||||+|+|||++.. ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999999999999999999999999764 456899999999999999999998753 344444 5
Q ss_pred CC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEeecCCC
Q 001316 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1102)
Q Consensus 250 ~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGS 328 (1102)
++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++..... +....|+|+|||||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGS 238 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST--GLRTTGKLNLVDLAGS 238 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT--TEEEEEEEEEEECCCC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC--CcEEEEEEEEEeCCCC
Confidence 65 57899999999999999999999999999999999999999999999999999876432 4567899999999999
Q ss_pred CC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHH
Q 001316 329 ES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407 (1102)
Q Consensus 329 Er-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETls 407 (1102)
|| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++
T Consensus 239 Er~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~ 317 (330)
T 2h58_A 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLY 317 (330)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHH
Confidence 99 5689999999999999999999999999999864 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q 001316 408 TLKFASRAKRVE 419 (1102)
Q Consensus 408 TLrfA~rak~I~ 419 (1102)
||+||+|||+|+
T Consensus 318 TL~fA~rak~i~ 329 (330)
T 2h58_A 318 SLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhCc
Confidence 999999999986
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=8.5e-84 Score=735.45 Aligned_cols=321 Identities=35% Similarity=0.554 Sum_probs=263.0
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecC-----------CCCCcceeeceecCCCCChhHHHhhhh
Q 001316 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE-----------YNPATAYAFDRVFGPHANSQEVYDVAA 162 (1102)
Q Consensus 94 ~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-----------~~~~~~f~FD~VF~~~~~q~~Vy~~~~ 162 (1102)
.+...+|+|+|+|||||+.+.+. ..+.+..++..+.... ......|.||+||+ +++|++||+.++
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 44567899999999999876431 2233444555543321 12235699999995 899999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccCCCCCC---CCchhhHHHHHHHHhhcCCCceeEEEeehhhhhcceeeecCC
Q 001316 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLD 239 (1102)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~---~GIipr~~~~LF~~i~~~~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1102)
.|+|+++|+|||+||||||||||||||||+|+..+ +|||||++++||+.++..++..|.|+|||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999999998764 899999999999999988888999999999999999999998
Q ss_pred CC------CCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCC
Q 001316 240 PT------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1102)
Q Consensus 240 ~~------~~~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~ 313 (1102)
+. ..++.|++++.|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|+.........
T Consensus 173 ~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 252 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 252 (358)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred CccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC
Confidence 63 357999999999999999999999999999999999999999999999999999999999999876544445
Q ss_pred cEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEE
Q 001316 314 GVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1102)
Q Consensus 314 ~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I 392 (1102)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 56789999999999999 56899999999999999999999999999999887899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 001316 393 CTVTPASSSMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 393 ~~isP~~~~~~ETlsTLrfA~rak~I 418 (1102)
|||+|+..+++||++||+||+|||+|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.8e-82 Score=722.41 Aligned_cols=320 Identities=33% Similarity=0.506 Sum_probs=260.6
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEee-C---CC-EEEecCC---CCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWYA-D---GD-KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~-~---~~-~~~~~~~---~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
.+|+|+|+|||||+++.|...+..+.+.. + +. .+.+... ...+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence 46899999999999999987766555532 1 22 2222211 1245799999999999999999974 6899999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCCCCC-----
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG----- 242 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~----- 242 (1102)
|+|||+||||||||||||||||+|+ .+|||||++++||..+... .+..|.|+|||+|||||+|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 4699999999999998753 356899999999999999999998643
Q ss_pred ------CcceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCc
Q 001316 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1102)
Q Consensus 243 ------~~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~ 314 (1102)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++..... +.
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 237 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT--GE 237 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT--CC
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC--CC
Confidence 467788775 47999999999999999999999999999999999999999999999999999876543 34
Q ss_pred EEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCC--CCccCCCCcchhhhhccCCCCccceE
Q 001316 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSL 391 (1102)
Q Consensus 315 ~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~--~hvPYRdSkLTrLLqdsLgGnskt~~ 391 (1102)
...|+|+||||||||| .+++++|.|++|+.+||+||++||+||.+|++++. .|||||||||||||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 6789999999999999 56899999999999999999999999999987543 59999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001316 392 ICTVTPASSSMEETHNTLKFASRAKRVEIYA 422 (1102)
Q Consensus 392 I~~isP~~~~~~ETlsTLrfA~rak~I~~~~ 422 (1102)
||||||+..+++||++||+||+|+++|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998653
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-82 Score=727.15 Aligned_cols=319 Identities=34% Similarity=0.504 Sum_probs=250.3
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--------eCCCEEEecC-------------CCCCcceeeceecCCCCCh
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--------ADGDKIVRNE-------------YNPATAYAFDRVFGPHANS 154 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~--------~~~~~~~~~~-------------~~~~~~f~FD~VF~~~~~q 154 (1102)
.+.+++|+|+|||||++++|...+...+.. .++..+.+.. ....+.|.||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 466899999999999999997654321111 1223333221 1234579999999999999
Q ss_pred hHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCC----CCCchhhHHHHHHHHhhcC--CCceeEEEeehhh
Q 001316 155 QEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN----SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLE 228 (1102)
Q Consensus 155 ~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~----~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lE 228 (1102)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||..++.. .+..|.|+|||+|
T Consensus 98 ~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 98 DEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred hhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 9999985 5899999999999999999999999999999754 6899999999999999753 3568999999999
Q ss_pred hhcceeeecCCCC-----CCcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEE
Q 001316 229 IYNEVINDLLDPT-----GQNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1102)
Q Consensus 229 IYnE~i~DLL~~~-----~~~l~ire~~---~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~ 300 (1102)
||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 256 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence 9999999999875 2468899883 5789999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcEEEEEEEEeecCCCCC-cccccch----hhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcc
Q 001316 301 LMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG----LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKL 375 (1102)
Q Consensus 301 i~v~~~~~~~~~~~~~~skL~lVDLAGSEr-~kt~~~g----~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkL 375 (1102)
|.|+...... .....|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|++++ .|||||||||
T Consensus 257 i~v~~~~~~~--~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkL 333 (376)
T 2rep_A 257 LQISGEHSSR--GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKL 333 (376)
T ss_dssp EEEEEEESSS--CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-SCCCGGGSHH
T ss_pred EEEEEEecCC--CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHH
Confidence 9999876543 345689999999999999 5688888 999999999999999999999999854 6999999999
Q ss_pred hhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001316 376 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1102)
Q Consensus 376 TrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak~I 418 (1102)
||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 334 T~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 334 TYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 21
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.3e-82 Score=719.85 Aligned_cols=320 Identities=32% Similarity=0.495 Sum_probs=263.4
Q ss_pred CCCEEEEEEeCCCCh-hhhhcCCeEEEe-eC---CC-EEEec---CCCCCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 99 GDSISVTIRFRPLSE-REFQRGDEIAWY-AD---GD-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 99 ~~~I~V~vRvRP~~~-~E~~~~~~~~~~-~~---~~-~~~~~---~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
+++|+|+|||||+++ .|......+.+. .+ +. .+... .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 589999999999987 443222222222 11 22 22222 223457899999999999999999985 6999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCCCCCC----
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQ---- 243 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~~---- 243 (1102)
|+|||+||||||||||||||||+|+ ++|||||++++||..|... .+..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 4799999999999999753 3568999999999999999999987643
Q ss_pred -----cceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEE
Q 001316 244 -----NLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316 (1102)
Q Consensus 244 -----~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 316 (1102)
.+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... +...
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 236 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT--GAHS 236 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC----CCEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC--Ccee
Confidence 47788765 57899999999999999999999999999999999999999999999999999875432 3467
Q ss_pred EEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCC--CCCccCCCCcchhhhhccCCCCccceEEE
Q 001316 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1102)
Q Consensus 317 ~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k--~~hvPYRdSkLTrLLqdsLgGnskt~~I~ 393 (1102)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 89999999999999 5689999999999999999999999999999865 47999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001316 394 TVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1102)
Q Consensus 394 ~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 423 (1102)
||||+..+++||++||+||+||++|++.+.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999987663
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=5.5e-82 Score=721.01 Aligned_cols=320 Identities=31% Similarity=0.456 Sum_probs=269.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeE-EEeeCCCEEEecCC---------CCCcceeeceecCCCCChhHHHhhhhHHHHHHHh
Q 001316 101 SISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1102)
Q Consensus 101 ~I~V~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~~---------~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l 170 (1102)
+|+|+||+||++++|...+... +...++.++.+... ...+.|.||+||+++++|++||+.++.|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 6999999999999998776543 33445555543321 1235799999999999999999999999999999
Q ss_pred c-CCceeEEeeccCCCCCccccCCCC-----CCCCchhhHHHHHHHHhhc-CCCceeEEEeehhhhhcceeeecCCCCCC
Q 001316 171 E-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1102)
Q Consensus 171 ~-G~N~tIfaYGqTgSGKT~Tm~G~~-----~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIYnE~i~DLL~~~~~ 243 (1102)
+ |||+||||||||||||||||+|+. ..+|||||++++||..++. ..+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999999974 6789999999999999975 3456899999999999999999998764
Q ss_pred cceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEE
Q 001316 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNL 322 (1102)
Q Consensus 244 ~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~l 322 (1102)
.+.+++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.... .....|+|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-----~~~~~skL~l 234 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-----KNTSLGKIAF 234 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----CCcceeEEEE
Confidence 56778887 68999999999999999999999999999999999999999999999999998743 2356799999
Q ss_pred eecCCCCC-cccccch-hhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCC
Q 001316 323 IDLAGSES-SKTETTG-LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1102)
Q Consensus 323 VDLAGSEr-~kt~~~g-~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~ 400 (1102)
|||||||| .++++.| .+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 313 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTIS 313 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcc
Confidence 99999999 4566665 578999999999999999999998764 69999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccccccccc
Q 001316 401 SMEETHNTLKFASRAKRVEIYASRNKI 427 (1102)
Q Consensus 401 ~~~ETlsTLrfA~rak~I~~~~~~n~~ 427 (1102)
+++||++||+||+|||+|+|.+..|+.
T Consensus 314 ~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 314 CCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp GHHHHHHHHHHHHHHCC----------
T ss_pred cHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999997766654
No 23
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=4.2e-82 Score=725.29 Aligned_cols=315 Identities=37% Similarity=0.553 Sum_probs=256.1
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCC----C-----CCcceeeceecCCCCChhHHHhhhhHHHHH
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~----~-----~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~ 167 (1102)
..++|+|+||+||++++|...+...++. ++...+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 3789999999999999998777644333 44444433211 1 235799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCCccccCCC------CCCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCC
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~G~------~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1102)
++|+|||+||||||||||||||||+|+ ...+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 999999999999999999999999996 346899999999999998643 356899999999999999999999
Q ss_pred CCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEE
Q 001316 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1102)
Q Consensus 240 ~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~s 318 (1102)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|+.. ....|
T Consensus 209 ~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------~~~~s 280 (387)
T 2heh_A 209 KK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-------GRMHG 280 (387)
T ss_dssp TT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-------SSEEE
T ss_pred CC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-------Ceeee
Confidence 75 479999998 5799999999999999999999999999999999999999999999999999864 13679
Q ss_pred EEEEeecCCCCCc-ccc-cchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhcc-CCCCccceEEEee
Q 001316 319 QLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1102)
Q Consensus 319 kL~lVDLAGSEr~-kt~-~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqds-LgGnskt~~I~~i 395 (1102)
+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+|||||
T Consensus 281 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred EEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 9999999999994 454 56788899999999999999999999985 469999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccc
Q 001316 396 TPASSSMEETHNTLKFASRAKRVEIY 421 (1102)
Q Consensus 396 sP~~~~~~ETlsTLrfA~rak~I~~~ 421 (1102)
||+..+++||++||+||+|||+|++.
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999864
No 24
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.4e-81 Score=728.54 Aligned_cols=326 Identities=34% Similarity=0.544 Sum_probs=270.6
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCC-------CCcceeeceecCCCCChhHHHhhhhHHHHHHH
Q 001316 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYN-------PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~-------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~ 169 (1102)
+.+|+|+|+|||||+.+.|...+...+...++.++.+.... ..+.|.||+||+++++|++||+. +.|+|+++
T Consensus 56 ~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~ 134 (412)
T 3u06_A 56 DLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSA 134 (412)
T ss_dssp HHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred HhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHH
Confidence 34689999999999999997666555555666665443211 24679999999999999999985 56999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCCCCCCcceE
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~~~~~~l~i 247 (1102)
|+|||+||||||||||||||||+|.++++|||||++++||..|... .+..|.|+|||+|||||.|+|||++....+.+
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i 214 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI 214 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCE
T ss_pred HCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCcee
Confidence 9999999999999999999999999999999999999999999753 45799999999999999999999987766666
Q ss_pred E--eCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEee
Q 001316 248 R--EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1102)
Q Consensus 248 r--e~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVD 324 (1102)
+ +++ .|+||.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... .....|+|+|||
T Consensus 215 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~kL~lVD 292 (412)
T 3u06_A 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK--QEISVGSINLVD 292 (412)
T ss_dssp EECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT--TEEEEEEEEEEE
T ss_pred eeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC--CCEEEEEEEEEE
Confidence 5 444 57999999999999999999999999999999999999999999999999998876433 456789999999
Q ss_pred cCCCCCcccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHH
Q 001316 325 LAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1102)
Q Consensus 325 LAGSEr~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~E 404 (1102)
|||||+.+ .|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+++|
T Consensus 293 LAGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~E 368 (412)
T 3u06_A 293 LAGSESPK---TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 368 (412)
T ss_dssp CCCCCC-------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHH
Confidence 99999864 4689999999999999999999999985 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccc-ccccccccC
Q 001316 405 THNTLKFASRAKRVEI-YASRNKIID 429 (1102)
Q Consensus 405 TlsTLrfA~rak~I~~-~~~~n~~~~ 429 (1102)
|++||+||+|++.|+. .+++|.+.+
T Consensus 369 Tl~TLrfA~rv~~i~~~~~~~n~~~~ 394 (412)
T 3u06_A 369 SVKSLRFAASVNSCKMTKAKRNRYLN 394 (412)
T ss_dssp HHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhhcccccccccccCC
Confidence 9999999999999984 455565443
No 25
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=9.8e-82 Score=726.30 Aligned_cols=316 Identities=36% Similarity=0.545 Sum_probs=260.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecCC----C-----CCcceeeceecCCCCChhHHHhhhhHHHHH
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~~----~-----~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~ 167 (1102)
..++|+|+||+||++.+|...+...++ ..++..+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 378999999999999999877765443 344444433211 1 235799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCCccccCCCC------CCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecCC
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL~ 239 (1102)
++|+|||+||||||||||||||||+|+. ..+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 9999999999999999999999999963 46899999999999998643 356899999999999999999999
Q ss_pred CCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEE
Q 001316 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1102)
Q Consensus 240 ~~~~~l~ire~~-~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~s 318 (1102)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.... ...|
T Consensus 229 ~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~s 300 (410)
T 1v8k_A 229 KK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-------RLHG 300 (410)
T ss_dssp TT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-------SEEE
T ss_pred CC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-------ccee
Confidence 75 479999998 67899999999999999999999999999999999999999999999999998641 3679
Q ss_pred EEEEeecCCCCCc-ccc-cchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhcc-CCCCccceEEEee
Q 001316 319 QLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1102)
Q Consensus 319 kL~lVDLAGSEr~-kt~-~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqds-LgGnskt~~I~~i 395 (1102)
+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+ |||||+|+|||||
T Consensus 301 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~i 379 (410)
T 1v8k_A 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379 (410)
T ss_dssp EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred EEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence 9999999999994 454 567889999999999999999999999754 69999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccccccc
Q 001316 396 TPASSSMEETHNTLKFASRAKRVEIYA 422 (1102)
Q Consensus 396 sP~~~~~~ETlsTLrfA~rak~I~~~~ 422 (1102)
||+..+++||++||+||+|||+|..+|
T Consensus 380 SP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 380 SPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999997665
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-80 Score=719.91 Aligned_cols=322 Identities=32% Similarity=0.502 Sum_probs=269.1
Q ss_pred CCCCCEEEEEEeCCCChh-hhhcCCeEEEe-eCC---C-EEEec---CCCCCcceeeceecCCCCChhHHHhhhhHHHHH
Q 001316 97 RSGDSISVTIRFRPLSER-EFQRGDEIAWY-ADG---D-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1102)
Q Consensus 97 ~~~~~I~V~vRvRP~~~~-E~~~~~~~~~~-~~~---~-~~~~~---~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~ 167 (1102)
+.+|+|+|+|||||+.+. |......+.+. .+. . .+... .....+.|.||+||+++++|++||+.+ .|+|+
T Consensus 56 elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~ 134 (403)
T 4etp_A 56 ELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQ 134 (403)
T ss_dssp HHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHH
T ss_pred HcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHH
Confidence 346899999999999877 33333333332 221 1 12211 122346799999999999999999975 58999
Q ss_pred HHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc--CCCceeEEEeehhhhhcceeeecCCCCC---
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~--~~~~~~~v~vS~lEIYnE~i~DLL~~~~--- 242 (1102)
++|+|||+||||||||||||||||+|+ .+|||||++++||..|.. ..+..|.|+|||+|||||.|+|||++..
T Consensus 135 ~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 212 (403)
T 4etp_A 135 SSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNK 212 (403)
T ss_dssp HHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC-----
T ss_pred HHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccc
Confidence 999999999999999999999999996 469999999999999975 4567999999999999999999998753
Q ss_pred ------CcceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCc
Q 001316 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1102)
Q Consensus 243 ------~~l~ire~~--~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~ 314 (1102)
..+.|++++ .|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... +.
T Consensus 213 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 290 (403)
T 4etp_A 213 EDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT--GA 290 (403)
T ss_dssp ---CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT--CC
T ss_pred cccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC--CC
Confidence 356787776 46899999999999999999999999999999999999999999999999999876433 34
Q ss_pred EEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCC--CCccCCCCcchhhhhccCCCCccceE
Q 001316 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSL 391 (1102)
Q Consensus 315 ~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~--~hvPYRdSkLTrLLqdsLgGnskt~~ 391 (1102)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+|
T Consensus 291 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~m 370 (403)
T 4etp_A 291 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLM 370 (403)
T ss_dssp EEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEE
T ss_pred eeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEE
Confidence 5789999999999999 57899999999999999999999999999987543 59999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001316 392 ICTVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1102)
Q Consensus 392 I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~ 423 (1102)
||||||+..+++||++||+||+|+++|++.+.
T Consensus 371 i~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 371 FVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999987663
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=8.7e-80 Score=699.00 Aligned_cols=309 Identities=29% Similarity=0.472 Sum_probs=245.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEee---CCCEEEecCCCCCcceeeceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001316 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYA---DGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1102)
Q Consensus 96 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~~~~---~~~~~~~~~~~~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G 172 (1102)
....++|+|+|||||+++.|......++..+ ++..+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp -CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 4556899999999999987744333344333 24444442 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCC------CCCCchhhHHHHHHHHhhcCC---CceeEEEeehhhhhcceeeecCCCCCC
Q 001316 173 VNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTP---GREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~G~~------~~~GIipr~~~~LF~~i~~~~---~~~~~v~vS~lEIYnE~i~DLL~~~~~ 243 (1102)
||+||||||||||||||||+|+. +++|||||++++||+.|.... ...|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 568999999999999997543 347999999999999999999987653
Q ss_pred cceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCCcEEEEEEEEe
Q 001316 244 NLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLI 323 (1102)
Q Consensus 244 ~l~ire~~~g~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lV 323 (1102)
... .+..+.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++. ...|+|+||
T Consensus 174 ~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~skl~lV 240 (344)
T 3dc4_A 174 MPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK--------THHSRMNIV 240 (344)
T ss_dssp SBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------SCEEEEEEE
T ss_pred Ccc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------CcEEEEEEE
Confidence 221 1334568999999999999999999999999999999999999999999999753 146999999
Q ss_pred ecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCH
Q 001316 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSM 402 (1102)
Q Consensus 324 DLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~ 402 (1102)
||||||| .++++.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..++
T Consensus 241 DLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~ 319 (344)
T 3dc4_A 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319 (344)
T ss_dssp ECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGH
T ss_pred ECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhH
Confidence 9999999 5689999999999999999999999999999875 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccc
Q 001316 403 EETHNTLKFASRAKRVEIYA 422 (1102)
Q Consensus 403 ~ETlsTLrfA~rak~I~~~~ 422 (1102)
+||++||+||+||+.....+
T Consensus 320 ~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 320 SETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999886554
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.4e-74 Score=717.10 Aligned_cols=318 Identities=34% Similarity=0.548 Sum_probs=252.5
Q ss_pred CCCCCEEEEEEeC----CCChhhhhcCCeEEEeeCCC--------EEEec-C---CCCCcceeeceecCCCCChhHHHhh
Q 001316 97 RSGDSISVTIRFR----PLSEREFQRGDEIAWYADGD--------KIVRN-E---YNPATAYAFDRVFGPHANSQEVYDV 160 (1102)
Q Consensus 97 ~~~~~I~V~vRvR----P~~~~E~~~~~~~~~~~~~~--------~~~~~-~---~~~~~~f~FD~VF~~~~~q~~Vy~~ 160 (1102)
...+.++|||||| |....|...|..++.+.... .+++. . ....+.|.||+||+++++|++||+.
T Consensus 371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 3458999999999 55555555554443332211 22221 1 1235689999999999999999997
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC--CCceeEEEeehhhhhcceeeecC
Q 001316 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1102)
Q Consensus 161 ~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~--~~~~~~v~vS~lEIYnE~i~DLL 238 (1102)
+ .|+|+++|+|||+||||||||||||||||+|. ++|||||++++||+.|+.. .+..|.|+|||+|||||+|+|||
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl 527 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL 527 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESS
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECC
Confidence 5 58999999999999999999999999999995 5799999999999999753 45689999999999999999999
Q ss_pred CCC---CCcceEEeCC-CC-cEeeCceEEEeCChHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCC
Q 001316 239 DPT---GQNLRVREDA-QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1102)
Q Consensus 239 ~~~---~~~l~ire~~-~g-~~v~gl~e~~V~s~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~ 313 (1102)
+|. ...+.++++. .| ++|.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++..... .
T Consensus 528 ~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~--~ 605 (715)
T 4h1g_A 528 NPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT--K 605 (715)
T ss_dssp SCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT--C
T ss_pred CCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC--C
Confidence 875 3456777655 44 899999999999999999999999999999999999999999999999999876543 3
Q ss_pred cEEEEEEEEeecCCCCC-cccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEE
Q 001316 314 GVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1102)
Q Consensus 314 ~~~~skL~lVDLAGSEr-~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I 392 (1102)
....|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+||
T Consensus 606 ~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i 685 (715)
T 4h1g_A 606 ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMF 685 (715)
T ss_dssp CEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEE
T ss_pred CEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEE
Confidence 46789999999999999 56899999999999999999999999999998888899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccc
Q 001316 393 CTVTPASSSMEETHNTLKFASRAKRVE 419 (1102)
Q Consensus 393 ~~isP~~~~~~ETlsTLrfA~rak~I~ 419 (1102)
|||||+..+++||++||+||+|||+|+
T Consensus 686 ~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 686 VNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=7.3e-31 Score=245.30 Aligned_cols=99 Identities=42% Similarity=0.622 Sum_probs=95.2
Q ss_pred hHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001316 343 GSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYA 422 (1102)
Q Consensus 343 ~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~ 422 (1102)
+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||+|+..+++||++||+||.|||.|++.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 35799999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHH
Q 001316 423 SRNKIIDEKSLIKKYQREI 441 (1102)
Q Consensus 423 ~~n~~~~~~~~i~~~~~ei 441 (1102)
.+|+..+.+.++++|++||
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999999887
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=5.5e-28 Score=233.26 Aligned_cols=98 Identities=42% Similarity=0.608 Sum_probs=91.8
Q ss_pred hhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001316 347 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1102)
Q Consensus 347 NkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETlsTLrfA~rak~I~~~~~~n~ 426 (1102)
|+||++||+||.+|++++..||||||||||+||+|+|||||+|+|||||+|+..+++||++||+||+|||.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 001316 427 IIDEKSLIKKYQREISSL 444 (1102)
Q Consensus 427 ~~~~~~~i~~~~~ei~~L 444 (1102)
..+.+.++++|++++..+
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 998888877777665444
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4e-24 Score=230.88 Aligned_cols=263 Identities=10% Similarity=0.117 Sum_probs=171.8
Q ss_pred CCCCEEEEEEeCCCC-hhhhhcCCeEEEeeCCCEEEecCCCCCcceeeceecCCCCChh--HHHhhhhHHHHHHHhc-CC
Q 001316 98 SGDSISVTIRFRPLS-EREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQ--EVYDVAARPVVKAAME-GV 173 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~~q~--~Vy~~~~~plV~~~l~-G~ 173 (1102)
-+|+|||+||+||.. + +...+.++++. +.++ . ..+.|.||+||++.+.|+ +||+. +.++|+.+++ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~-~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQG-L-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEET-T-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeec-C-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 469999999999964 3 22234455544 3332 2 347899999999999999 99996 8899999999 99
Q ss_pred ceeEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhc-CCCceeEEEeehhhhh-cceeeecCCC--CCCcceEEe
Q 001316 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIY-NEVINDLLDP--TGQNLRVRE 249 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~-~~~~~~~v~vS~lEIY-nE~i~DLL~~--~~~~l~ire 249 (1102)
|+||||||||||||| ||++..+|..... .. ..|.+.+||+||| ||.++|||.. .+..+.|+.
T Consensus 93 NvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~ 158 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 158 (298)
T ss_dssp CEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEE
T ss_pred ceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEe
Confidence 999999999999999 9999999987633 22 7899999999999 9999999963 334667777
Q ss_pred CCC-CcEeeCceEEEeCC-hHHHHHHHHHHhhhcccCCCccccCCCCceeEEEEEEEEecCCCCCC-cEEEEEEEEeecC
Q 001316 250 DAQ-GTYVEGIKEEVVLS-PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD-GVIFSQLNLIDLA 326 (1102)
Q Consensus 250 ~~~-g~~v~gl~e~~V~s-~~e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~v~~~~~~~~~~-~~~~skL~lVDLA 326 (1102)
+.. +++|.|++.+.|.+ ++|+..++..+..- ..|. +.-.|..+.+...+.....+ .-..--++|+.+.
T Consensus 159 ~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 159 KFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELN 229 (298)
T ss_dssp EECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEEC
T ss_pred cCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeC
Confidence 764 56899999999999 89988776322211 1221 22345555554421111101 0011246777764
Q ss_pred CCCCcccccchhhhhhhHHHhhhHHHHHHHHHHhhcCCCCCccCCCCcchhhhhccCCCCccceEEEeeCCCCCCHHHHH
Q 001316 327 GSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1102)
Q Consensus 327 GSEr~kt~~~g~r~kE~~~INkSL~aLg~vI~aL~~~k~~hvPYRdSkLTrLLqdsLgGnskt~~I~~isP~~~~~~ETl 406 (1102)
-. ++...|.+.+ ..+ -+-.|+++-+|+.-|. ..+-++++++.-...+ -
T Consensus 230 ~~-------------------~~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~----~ 277 (298)
T 2o0a_A 230 NL-------------------KSIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNV----N 277 (298)
T ss_dssp SH-------------------HHHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGH----H
T ss_pred CH-------------------HHHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCch----h
Confidence 21 1122333322 222 3456788888887764 5688999999864322 2
Q ss_pred HHHHHHHHhccccccccc
Q 001316 407 NTLKFASRAKRVEIYASR 424 (1102)
Q Consensus 407 sTLrfA~rak~I~~~~~~ 424 (1102)
.-|..+++..++.|..+.
T Consensus 278 ~lL~~s~~i~~~~~~~~~ 295 (298)
T 2o0a_A 278 KLLTISEEVQTQLCKRKK 295 (298)
T ss_dssp HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcccc
Confidence 377888888877765433
No 32
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=7.9e-12 Score=109.29 Aligned_cols=51 Identities=37% Similarity=0.862 Sum_probs=48.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1102 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if~ 1102 (1102)
+...|+||++++++++|+||||+++|..|+..+..||+||++|...+++|.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 456899999999999999999999999999999999999999999999984
No 33
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.14 E-value=3.2e-11 Score=108.51 Aligned_cols=47 Identities=30% Similarity=0.876 Sum_probs=45.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1101 (1102)
.|+||++...+++++||||.+||..|+..+..||+||.+|...+++|
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 79999999999999999999999999999999999999999999998
No 34
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=2.1e-11 Score=104.90 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=45.3
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcCC----CCCCCcccccceeecc
Q 001316 1052 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLACS----ECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~--pCgH~~~C~~C~~~~~----~CPiCR~~i~~~i~if 1101 (1102)
....|+||++++++++++ ||||+++|..|+..+. .||+||++|...++||
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 455899999999998888 9999999999987764 8999999999999998
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.05 E-value=1.4e-10 Score=102.84 Aligned_cols=47 Identities=34% Similarity=0.913 Sum_probs=45.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1101 (1102)
.|.||++...+.+++||||.+||..|......||+||.+|...++||
T Consensus 26 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp BCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-10 Score=102.76 Aligned_cols=47 Identities=36% Similarity=0.949 Sum_probs=45.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1101 (1102)
.|.||++...+.+++||||.+||..|......||+||.+|...++||
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 37
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.97 E-value=7e-11 Score=101.95 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=44.7
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001316 1052 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~--pCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~if 1101 (1102)
+...|+||++++++++++ ||||+++|..|+... ..||+||++|...+++|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 344799999999999998 999999999997665 35999999999999998
No 38
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.73 E-value=4.2e-09 Score=119.73 Aligned_cols=47 Identities=34% Similarity=0.994 Sum_probs=46.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~~~CPiCR~~i~~~i~if 1101 (1102)
.|+||++...+.+++||||.|||..|...+..||+||.+|...++||
T Consensus 297 ~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp BCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 79999999999999999999999999999999999999999999998
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.28 E-value=2.3e-07 Score=91.96 Aligned_cols=44 Identities=36% Similarity=0.760 Sum_probs=37.8
Q ss_pred cccccccccccceEEeCCCCcccchhhhhc----CCCCCCCccccccee
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRL 1098 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~i 1098 (1102)
..|+||++...+.+++||||. ||..|... ...||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 479999999999999999997 99999643 356999999997654
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.15 E-value=7e-07 Score=77.09 Aligned_cols=48 Identities=27% Similarity=0.864 Sum_probs=40.3
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhhhc----CCCCCCCcccccceeecc
Q 001316 1053 SHMCKVCFESPTA-AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~-~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~if 1101 (1102)
...|.||++...+ ++++||||. ||..|... ...||+||..+...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4579999999988 589999999 99999643 367999999999876654
No 41
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=4.5e-07 Score=78.85 Aligned_cols=49 Identities=27% Similarity=0.776 Sum_probs=40.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~if 1101 (1102)
.....|.||++...+ +++||||. ||..|.... ..||+||.+|.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345689999999999 88999999 999997643 56999999998765554
No 42
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=9.5e-07 Score=77.18 Aligned_cols=44 Identities=27% Similarity=0.870 Sum_probs=38.0
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34579999999999999999999 999997653 569999999864
No 43
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.2e-06 Score=76.73 Aligned_cols=44 Identities=23% Similarity=0.788 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1096 (1102)
....|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45589999999999999999999 999995432 369999999864
No 44
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.1e-06 Score=78.66 Aligned_cols=46 Identities=26% Similarity=0.714 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1097 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1097 (1102)
.....|.||++...+.+++||||. ||..|... ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 345689999999999999999999 99999643 35699999998743
No 45
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.05 E-value=6.2e-06 Score=108.10 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=26.0
Q ss_pred hHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCcccc
Q 001316 155 QEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 155 ~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
-.||. ++......++ .|.|-||+..|-+|||||.+.
T Consensus 150 PHi~a-ia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 150 PHIYA-IADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCHHH-HHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred ccHhh-hHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35675 3333333333 799999999999999999763
No 46
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.05 E-value=0.021 Score=60.59 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHHh
Q 001316 610 DLLVEQVKMLAGEIA 624 (1102)
Q Consensus 610 d~l~eq~k~l~~e~a 624 (1102)
|-|+..+..+..++.
T Consensus 2 ~~~~~~~~~l~~~~~ 16 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKE 16 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHH
Confidence 334444443333333
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.04 E-value=1.9e-06 Score=98.59 Aligned_cols=47 Identities=32% Similarity=0.812 Sum_probs=40.9
Q ss_pred cccccccccccceEEeCCCCcccchhhhh-----cCCCCCCCcccccceeecc
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~-----~~~~CPiCR~~i~~~i~if 1101 (1102)
..|.||++...+.+++||||. ||..|.. ....||+||.+|.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 589999999999999999999 8999964 3577999999998876553
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.03 E-value=1.3e-06 Score=74.07 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=38.5
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001316 1053 SHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1101 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~--~~i~if 1101 (1102)
...|.||++...+. +++||||. ||..|... ...||+||..+. ..+++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 34799999977664 88999999 99999643 357999999987 456665
No 49
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.02 E-value=2e-06 Score=70.85 Aligned_cols=43 Identities=35% Similarity=0.802 Sum_probs=35.5
Q ss_pred cccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCccccc
Q 001316 1052 NSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKIS 1095 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~ 1095 (1102)
+...|.||++...+ ++++||||. ||..|.... ..||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34579999998755 899999998 999995432 67999999885
No 50
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.3e-06 Score=75.25 Aligned_cols=45 Identities=27% Similarity=0.798 Sum_probs=36.7
Q ss_pred ccccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
.....|.||++...+. +++||||. ||..|... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3455899999987765 88999998 99999643 3679999999865
No 51
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.99 E-value=2.3e-06 Score=75.93 Aligned_cols=45 Identities=33% Similarity=0.756 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----------CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----------CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----------~~~CPiCR~~i~~ 1096 (1102)
.....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345689999999999999999998 99999653 3569999999864
No 52
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.99 E-value=1.4e-06 Score=75.66 Aligned_cols=49 Identities=24% Similarity=0.709 Sum_probs=38.4
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc--eeecc
Q 001316 1052 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD--RLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~--~i~if 1101 (1102)
....|.||++...+. +++||||. ||..|... ...||+||..+.. ..++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 445899999987765 89999998 99999643 3679999999874 34444
No 53
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2.7e-06 Score=77.02 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=37.5
Q ss_pred Cccccccccccccccc----eEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001316 1050 DPNSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1096 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~----~vl~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1096 (1102)
......|.||++...+ .+++||||. ||..|.... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3445689999999888 899999998 999995432 579999998753
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.97 E-value=3.6e-06 Score=75.40 Aligned_cols=44 Identities=25% Similarity=0.725 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----------~~~CPiCR~~i~~ 1096 (1102)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999999999999999998 99999543 4579999999874
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=3.2e-06 Score=73.16 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=38.7
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001316 1051 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1100 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~i 1100 (1102)
.....|.||++.. ..++++||||. ||..|... ...||+||..|...++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 3456899997754 56788999999 99999543 36699999999876654
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=3.6e-06 Score=73.70 Aligned_cols=46 Identities=26% Similarity=0.668 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCcccccce
Q 001316 1051 PNSHMCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISDR 1097 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1097 (1102)
.....|.||++...+.+.+ ||||. ||..|... ...||+||..|...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3456899999999988887 99999 99999533 46799999998764
No 57
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.93 E-value=1e-05 Score=106.14 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHHHhhc
Q 001316 607 DQMDLLVEQVKMLAGEIAFS 626 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~ 626 (1102)
.+++.|+++++.+...+...
T Consensus 857 ~El~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555554443
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=2.8e-06 Score=70.97 Aligned_cols=44 Identities=34% Similarity=0.748 Sum_probs=37.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-CCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-SECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-~~CPiCR~~i~~ 1096 (1102)
+...|.||++...+.+++||||. ||..|.... ..||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 34579999999999999999998 999997543 569999998763
No 59
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.92 E-value=6.6e-06 Score=79.79 Aligned_cols=41 Identities=32% Similarity=0.693 Sum_probs=36.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
.|.||++...+.+++||||. ||..|... ...||+||.++..
T Consensus 54 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 79999999999999999999 99999532 2479999999975
No 60
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.91 E-value=0.036 Score=58.76 Aligned_cols=24 Identities=0% Similarity=-0.056 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHhhchHHH
Q 001316 607 DQMDLLVEQVKMLAGEIAFSSSNL 630 (1102)
Q Consensus 607 d~~d~l~eq~k~l~~e~a~~~s~L 630 (1102)
++++.+..++..|..++......+
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443333
No 61
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=4.1e-06 Score=75.01 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----------~~~CPiCR~~i~~ 1096 (1102)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999999999999999998 99999543 4679999998874
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=3.7e-06 Score=72.28 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
.....|.||++...+.+.+||||. ||..|... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345689999999999999999999 99999542 3569999999875
No 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.89 E-value=2.6e-06 Score=76.29 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=38.3
Q ss_pred ccccccccccccc--cceEEeC--CCCcccchhhhhcC-----CCCCCCcccccceeecc
Q 001316 1051 PNSHMCKVCFESP--TAAILLP--CRHFCLCKSCSLAC-----SECPICRTKISDRLFAF 1101 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~--~~~vl~p--CgH~~~C~~C~~~~-----~~CPiCR~~i~~~i~if 1101 (1102)
.+...|.||++.. .+.+++| |||. ||..|...+ ..||+||+++.....+|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3455899999976 4567777 9999 999996544 46999999998754443
No 64
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.88 E-value=6.4e-06 Score=67.92 Aligned_cols=43 Identities=33% Similarity=0.737 Sum_probs=34.9
Q ss_pred cccccccccccccc---eEEeC-CCCcccchhhhhc----CCCCCCCccccc
Q 001316 1052 NSHMCKVCFESPTA---AILLP-CRHFCLCKSCSLA----CSECPICRTKIS 1095 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~---~vl~p-CgH~~~C~~C~~~----~~~CPiCR~~i~ 1095 (1102)
+...|.||++...+ ++.+| |||. ||..|... ...||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 44589999998776 78887 9998 99999654 356999999873
No 65
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.87 E-value=4.1e-06 Score=76.97 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=36.4
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001316 1052 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1097 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~---~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1097 (1102)
....|.||++.... ++.+||||. ||..|... ...||+||..|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 45589999987766 888999998 99999543 35699999998653
No 66
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.85 E-value=6.7e-06 Score=77.89 Aligned_cols=41 Identities=34% Similarity=0.936 Sum_probs=35.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-------~~CPiCR~~i~~ 1096 (1102)
.|.||++...+.+++||||. ||..|.... ..||+||..+..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 79999999999999999998 999995432 369999998864
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.85 E-value=9e-06 Score=71.63 Aligned_cols=45 Identities=27% Similarity=0.757 Sum_probs=37.2
Q ss_pred CccccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCccccc
Q 001316 1050 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKIS 1095 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~~------~~CPiCR~~i~ 1095 (1102)
......|.||++...+.+++| |||. ||..|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345568999999999999999 9998 999995332 47999999754
No 68
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.83 E-value=6.3e-06 Score=73.09 Aligned_cols=45 Identities=31% Similarity=0.803 Sum_probs=35.2
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001316 1052 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1097 (1102)
Q Consensus 1052 ~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~ 1097 (1102)
....|.||++.. ..++++||||. ||..|... ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 455899997654 55677899998 99999543 36799999998763
No 69
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=6.5e-06 Score=72.25 Aligned_cols=48 Identities=23% Similarity=0.613 Sum_probs=37.2
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceee
Q 001316 1051 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLF 1099 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~---~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~~i~ 1099 (1102)
.....|.||++.. ..++++||+|. ||..|... ...||+||.+|.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455899999875 45667799999 99999543 3579999999987544
No 70
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=5.4e-06 Score=73.06 Aligned_cols=44 Identities=30% Similarity=0.690 Sum_probs=34.6
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~---~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
....|.||++.... ++.+||+|. ||..|... ...||+||..|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44589999976543 588899998 99999543 3679999998864
No 71
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.79 E-value=7.8e-06 Score=74.87 Aligned_cols=44 Identities=27% Similarity=0.755 Sum_probs=37.1
Q ss_pred CccccccccccccccceEEeC-CCCcccchhhhhc------CCCCCCCcccc
Q 001316 1050 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLA------CSECPICRTKI 1094 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~------~~~CPiCR~~i 1094 (1102)
......|.||++...+.+++| |||. ||..|... ...||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345568999999999999999 9999 99999532 24799999987
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=5.9e-06 Score=70.74 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=32.7
Q ss_pred cccccccc-cccce----EEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1054 HMCKVCFE-SPTAA----ILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~-~~~~~----vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
..|.||++ ...+. +++||||. ||..|.... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 33333 67899999 999995443 569999999864
No 73
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.74 E-value=9.9e-06 Score=77.43 Aligned_cols=42 Identities=38% Similarity=0.947 Sum_probs=36.4
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
..|.||++...+.+.+||||. ||..|.... ..||+||..+..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 379999999999999999999 999996543 369999999863
No 74
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.73 E-value=1.4e-05 Score=74.64 Aligned_cols=41 Identities=32% Similarity=0.702 Sum_probs=35.6
Q ss_pred ccccccccccceEE-eCCCCcccchhhhhc----C-CCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAIL-LPCRHFCLCKSCSLA----C-SECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~----~-~~CPiCR~~i~~ 1096 (1102)
.|.||++...+.++ ++|||. ||..|... . ..||+||.++..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 79999999999999 999999 99999543 2 579999998753
No 75
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.72 E-value=1.2e-05 Score=80.97 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=36.9
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1097 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~~ 1097 (1102)
..|.||++...+.+++||||. ||..|.... ..||+||..+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 379999999999999999998 999995432 3699999998754
No 76
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.69 E-value=1.8e-05 Score=70.16 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
.....|.||++-..+.|++||||. ||..|... ...||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 445689999999999999999999 99999532 3569999999864
No 77
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.67 E-value=1.1e-05 Score=82.20 Aligned_cols=42 Identities=31% Similarity=0.870 Sum_probs=35.6
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILL-PCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
..|.||++...+.+.+ ||||. ||..|... ...||+||.+|..
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4899999999999888 99998 99999533 3569999999853
No 78
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.66 E-value=1.2e-05 Score=74.66 Aligned_cols=41 Identities=29% Similarity=0.850 Sum_probs=35.5
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
.|.||++...+.+++ ||||. ||..|... ...||+||..+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 799999999999888 99999 99999543 3569999998874
No 79
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.64 E-value=1.6e-05 Score=75.21 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=36.9
Q ss_pred ccccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
...|.||++...+.+.+ ||||. ||..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 34799999999999998 99999 999995432 679999999875
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=2.6e-05 Score=66.18 Aligned_cols=39 Identities=23% Similarity=0.815 Sum_probs=32.7
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCC
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPIC 1090 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiC 1090 (1102)
.....|.||++...+.+++||||. ||..|... ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345589999999999999999999 99999432 3479998
No 81
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.58 E-value=2.9e-05 Score=74.52 Aligned_cols=40 Identities=30% Similarity=0.845 Sum_probs=36.0
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhcC--CCCCCCccccc
Q 001316 1055 MCKVCFESPTAAILL-PCRHFCLCKSCSLAC--SECPICRTKIS 1095 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~--~~CPiCR~~i~ 1095 (1102)
.|.||++...+.+++ ||||. ||..|.... ..||+||.++.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 799999999999999 99999 999997655 56999999985
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=2e-05 Score=65.51 Aligned_cols=38 Identities=32% Similarity=0.864 Sum_probs=32.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCC
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPIC 1090 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-------~~~CPiC 1090 (1102)
....|.||++...+.+++||||. ||..|... ...||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45589999999999999999999 99999543 2569998
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.51 E-value=3.4e-05 Score=74.18 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
.....|.||++...+.+.+||||. ||..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345589999999999999999999 999996432 489999999875
No 84
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=97.49 E-value=0.00013 Score=64.26 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhcc
Q 001316 903 ARKQREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 959 (1102)
Q Consensus 903 ~~~e~q~aLeael~~k~~~eeEl~----------~~lee~k~~~~~Le~eL~~m~vlv~kL~ke~~~ 959 (1102)
+++++|++|+++|++||.+++||. +++.+++++..+|..|+ .+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~-------~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHV-------RQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 788999999999999999999997 89999999999999999 777777654
No 85
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.42 E-value=2.9e-05 Score=73.91 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=33.2
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhhhc---------CCCCCCCcccccce
Q 001316 1054 HMCKVCFESPTA------------------AILLPCRHFCLCKSCSLA---------CSECPICRTKISDR 1097 (1102)
Q Consensus 1054 ~~C~IC~~~~~~------------------~vl~pCgH~~~C~~C~~~---------~~~CPiCR~~i~~~ 1097 (1102)
..|.||++.... ++++||+|. ||..|... ...||+||..+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 479999998643 348899998 99999432 34699999988653
No 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.32 E-value=8.3e-05 Score=71.06 Aligned_cols=41 Identities=29% Similarity=0.750 Sum_probs=36.0
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1096 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~ 1096 (1102)
.|.||++...+.+.+||||. ||..|... ...||+||.+|..
T Consensus 25 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 25 SCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp BCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 79999999999999999999 99999532 3579999999864
No 87
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.29 E-value=0.00013 Score=79.86 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=38.2
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1050 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
.+....|+||++-..+.|++||||. ||..|...+ ..||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3455689999999999999999999 999995432 339999999863
No 88
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.22 E-value=0.012 Score=64.05 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=19.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 812 AVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 812 ~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.-|+.+|..+++.+..++..+++++....+.
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666667776666666666665554444
No 89
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.20 E-value=0.00012 Score=68.53 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
+....|+||++-.++-|++||||. ||..|... ...||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345589999999999999999999 99999533 3569999998764
No 90
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00015 Score=65.09 Aligned_cols=43 Identities=19% Similarity=0.577 Sum_probs=31.6
Q ss_pred ccccccccccccc--------------eEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTA--------------AILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~--------------~vl~-pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
...|.||++.... ++++ +|+|. ||..|... ...||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 3468888887654 4444 59999 99999542 3569999998753
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.18 E-value=8.3e-05 Score=72.05 Aligned_cols=44 Identities=27% Similarity=0.813 Sum_probs=36.1
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
+...|.||++...+. +++||||. ||..|... -..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 345899999988776 99999998 99999643 3569999998874
No 92
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.16 E-value=0.00015 Score=65.77 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
+....|.||++-.++-|++||||. ||..|... ...||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345689999999999999999999 99999433 4679999998764
No 93
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.14 E-value=0.00016 Score=67.53 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCC-Ccccchhhhhc----CCCCCCCcccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCR-HFCLCKSCSLA----CSECPICRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCg-H~~~C~~C~~~----~~~CPiCR~~i~~ 1096 (1102)
....|+||++-.++-|++||| |. ||..|... ...||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 445899999999999999999 98 99999543 3569999998764
No 94
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.13 E-value=5.3e-05 Score=75.40 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=36.2
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccc
Q 001316 1051 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKI 1094 (1102)
Q Consensus 1051 ~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i 1094 (1102)
.....|.||++-..+.|.++|||. ||..|.... ..||+||.+|
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345589999999999999999999 999995443 3699999975
No 95
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.10 E-value=0.00041 Score=71.55 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCCCccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1047 GNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1047 ~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
....+....|+||++-..+.|++||||. ||..|...+ ..||+|+.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3455677799999999999999999998 999994321 359999998764
No 96
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.05 E-value=0.00019 Score=69.40 Aligned_cols=49 Identities=24% Similarity=0.709 Sum_probs=38.8
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc--eeecc
Q 001316 1052 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD--RLFAF 1101 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~-------vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~~--~i~if 1101 (1102)
+...|.||++..... ++.+|||. ||..|... ...||+||..|.. .+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 445899999977664 88999999 99999543 4679999999874 45555
No 97
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.82 E-value=0.00055 Score=69.83 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=38.8
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001316 1050 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1096 (1102)
Q Consensus 1050 ~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~-----~~CPiCR~~i~~ 1096 (1102)
......|.||++-..+.|..||||. ||..|.... ..||+||.+|..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3455689999999999999999999 999996432 489999999875
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.81 E-value=0.073 Score=75.18 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
.++++|+.++..+..|++.|+.+++........|..|.+.-+.|-.-+.+.+..+..+...|-..
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 45678888999999999999999999999999999999999999999999999999888888665
No 99
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.72 E-value=0.00069 Score=64.09 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=31.9
Q ss_pred ccccccccccc------------------ceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001316 1054 HMCKVCFESPT------------------AAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1095 (1102)
Q Consensus 1054 ~~C~IC~~~~~------------------~~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~ 1095 (1102)
..|.||++... .++++||+|. ||..|... ...||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 46999987654 2577899999 99999543 356999999863
No 100
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.61 E-value=0.18 Score=52.02 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=82.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001316 599 HPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQ-NLEREIQEKRRQMRILEQRIIENGEASM 677 (1102)
Q Consensus 599 ~~~~~~~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~q-kL~~el~dk~eei~~l~qki~~s~~~s~ 677 (1102)
+|++....|++.--++........+.+...+|..+.+.+ .+++ .|+.+|...+-.+..|..++.+...
T Consensus 2 ~~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS--------rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~--- 70 (189)
T 2v71_A 2 AMDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGS--------RELEAELEAQLVQAEQRNRDLQADNQRLKY--- 70 (189)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456677778888887777777777777777776666555 2333 3555555555555555554432221
Q ss_pred ccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChH
Q 001316 678 ANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDE 757 (1102)
Q Consensus 678 ~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~ 757 (1102)
| +..++.-++...- +-...+..||.++......+..|+..|-.|.+.
T Consensus 71 ------E----~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~-------------------- 117 (189)
T 2v71_A 71 ------E----VEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA-------------------- 117 (189)
T ss_dssp ------H----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred ------H----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 1 1111111110000 001133444444444444444444444444432
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHH
Q 001316 758 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQK 796 (1102)
Q Consensus 758 ~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~k 796 (1102)
-++|.......+.-++++..++....|.+..|+.++.-
T Consensus 118 -NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 118 -NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444444555666789999999999999999999873
No 101
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.40 E-value=0.00059 Score=65.68 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=0.0
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001316 1054 HMCKVCFESPTA------------------AILLPCRHFCLCKSCSLA----CSECPICRTKIS 1095 (1102)
Q Consensus 1054 ~~C~IC~~~~~~------------------~vl~pCgH~~~C~~C~~~----~~~CPiCR~~i~ 1095 (1102)
..|.||++...+ ++++||+|. ||..|... ...||+||+.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 379999887543 345699999 99999654 356999999853
No 102
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.35 E-value=0.0015 Score=60.22 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=33.8
Q ss_pred cccccccccccccceEEeC-CCCcccchhhhhc----------CCCCCC--Cccc
Q 001316 1052 NSHMCKVCFESPTAAILLP-CRHFCLCKSCSLA----------CSECPI--CRTK 1093 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~----------~~~CPi--CR~~ 1093 (1102)
....|+||++-..+-|+.| |||. ||..|... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3457999999999999997 9999 99999432 237999 9855
No 103
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.98 E-value=0.82 Score=49.56 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhh
Q 001316 687 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 766 (1102)
Q Consensus 687 ~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~ 766 (1102)
.++..|+.++....-.+....++...++.++...+.++..++..+...+.++. ... +...+..|.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~------~v~------~~kE~~aL~--- 96 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS------EIK------SERELRSLN--- 96 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCS------SSSHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccC------CHHHHHHHH---
Confidence 34445555555555555555666777788888888888888888888888882 111 112333333
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001316 767 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 825 (1102)
Q Consensus 767 ~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL 825 (1102)
.||+.++.+...|.++...+..+.+.+..+....+........+|..+..+++.-
T Consensus 97 ----kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 151 (256)
T 3na7_A 97 ----IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENE 151 (256)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777776666666655444444444444444444443333
No 104
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.88 E-value=0.0015 Score=60.05 Aligned_cols=41 Identities=24% Similarity=0.672 Sum_probs=29.6
Q ss_pred cccccccccccccceE---EeCCCCcccchhhhhc------------CCCCCC--Cccc
Q 001316 1052 NSHMCKVCFESPTAAI---LLPCRHFCLCKSCSLA------------CSECPI--CRTK 1093 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~v---l~pCgH~~~C~~C~~~------------~~~CPi--CR~~ 1093 (1102)
+...|.||++...... +.||||. ||..|... .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3457999998755432 2389999 99999322 135999 9988
No 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.86 E-value=0.046 Score=70.82 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 769 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 769 q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
+..|.+.++.+...|+++...|+.+++++.++.+...+.....- ..|.++|..|..+|++|++++....
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777776666555444443 2666889999999999988876544
No 106
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0032 Score=68.29 Aligned_cols=44 Identities=18% Similarity=0.432 Sum_probs=35.8
Q ss_pred cccccccccccccceEEe-CCCCcccchhhhhcC------CCCCC--Ccccccc
Q 001316 1052 NSHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC------SECPI--CRTKISD 1096 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~------~~CPi--CR~~i~~ 1096 (1102)
....|+||++-.++-|.. .|||. ||..|...+ ..||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 445899999999999985 99998 999995432 35999 9997653
No 107
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.0075 Score=54.02 Aligned_cols=45 Identities=20% Similarity=0.722 Sum_probs=33.8
Q ss_pred cccccccccccc--cceEEeCCC-----Ccccchhhhhc------CCCCCCCcccccce
Q 001316 1052 NSHMCKVCFESP--TAAILLPCR-----HFCLCKSCSLA------CSECPICRTKISDR 1097 (1102)
Q Consensus 1052 ~~~~C~IC~~~~--~~~vl~pCg-----H~~~C~~C~~~------~~~CPiCR~~i~~~ 1097 (1102)
....|.||++.. .+.+++||. |. |...|... -..||+||..+.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 445899999754 456789997 98 99999432 14799999988643
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.57 E-value=0.11 Score=67.22 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=24.9
Q ss_pred HHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCccc
Q 001316 156 EVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 156 ~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~T 190 (1102)
.||. ++......++ .+.|-||+.-|-+|||||.+
T Consensus 138 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 138 HIFA-VAEEAYKQMARDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCccch
Confidence 4665 3333333333 79999999999999999976
No 109
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.18 E-value=0.0069 Score=55.98 Aligned_cols=42 Identities=24% Similarity=0.711 Sum_probs=29.6
Q ss_pred cccccccccc-ceEEeCCCCcccchhhhhc-----CCCCCCCcccccce
Q 001316 1055 MCKVCFESPT-AAILLPCRHFCLCKSCSLA-----CSECPICRTKISDR 1097 (1102)
Q Consensus 1055 ~C~IC~~~~~-~~vl~pCgH~~~C~~C~~~-----~~~CPiCR~~i~~~ 1097 (1102)
.|.+|--.-. -.-++||.|. ||..|+.. ...||+|+.+|...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777733221 1235699996 99999843 46799999999764
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.03 E-value=0.43 Score=67.72 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHH-------
Q 001316 641 PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRIL------- 713 (1102)
Q Consensus 641 ~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~l------- 713 (1102)
|..-=..+.-...-+..|.+++.....|+..- -. -..|....|.+|+.+|.++..+|++|+.+...+
T Consensus 1894 P~syLeli~~y~~ll~~K~~el~~~~~rl~~G-L~-----KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A 1894 PRHYLDFINQVVLLINEKRDQLEEEQLHLNIG-LK-----KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666677777777777776666211 10 111444555555555555555555553322211
Q ss_pred -------HHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCC-----CCCChHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001316 714 -------QEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSG-----QGTSDEYVDELRKKVQSQETENEKLKLEHV 781 (1102)
Q Consensus 714 -------qeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~-----~~~~e~~~~el~~~~~~q~~E~e~lk~~~~ 781 (1102)
|+...+.+.+++.-.+++...+....+ ++.++.+.. ..+.++.+.+.+.+|..-..++.++..+..
T Consensus 1968 ~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~--dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~ 2045 (3245)
T 3vkg_A 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYA--DLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIA 2045 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222233333333333333211 122222220 011222233334455555666777777888
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 782 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 782 ~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
.|.++++.+..|-+.|..++......-..|..-+..|+.|-.+=..+...+..++..
T Consensus 2046 ~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2046 TYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888887888888877777777777777654
No 111
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.66 E-value=4 Score=40.82 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHH
Q 001316 609 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 688 (1102)
Q Consensus 609 ~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~ 688 (1102)
|+.|-.|+|.. . ..-.+.|+++.+ ++.++..-++-.+..+.|+...... +...
T Consensus 2 ~~~lE~qlkea-a------e~ad~KyeEvaR-----------~E~dLEraEERae~aE~k~~eLEee---------L~~v 54 (155)
T 2efr_A 2 MKQLEDKVEEL-L------SKNYHLENEVAR-----------LKKLLERAEERAELSEGKSAELEEE---------LKTV 54 (155)
T ss_dssp HHHHHHHHHHH-H------HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
T ss_pred HHHHHHHHHHH-H------HHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Confidence 56777888877 2 444556666655 6677777777777777776333221 1100
Q ss_pred HHHHHHHhhhhhhhHHHh----hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 689 VTRLMSQCNEKAFELEIK----SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 689 i~~l~~ql~ek~~el~~k----~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-..|+ .|+-.+-.+.++ ...++.|+++|.+++.+...-...|..|+..+
T Consensus 55 ~~nlK-sLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i 107 (155)
T 2efr_A 55 TNNLK-SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 107 (155)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00010 011111111111 23566777777777777666666666666444
No 112
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.11 E-value=4.8 Score=40.64 Aligned_cols=107 Identities=20% Similarity=0.108 Sum_probs=63.1
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQET 771 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~ 771 (1102)
|+.+-.|....+..-...++-||+.+...+.....|+.++..|+-+|
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L--------------------------------- 78 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL--------------------------------- 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 33333333333333344566788888888888888999998888877
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 833 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~ 833 (1102)
+.=+.....-.+-...|+..+..|..+....+..-+.+..|.+.|.+.+.-|..+++-++
T Consensus 79 --~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 79 --EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111122222233333444455555555555555555566666777777777776666666
No 113
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.95 E-value=3.4 Score=41.23 Aligned_cols=89 Identities=25% Similarity=0.282 Sum_probs=53.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 792 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~ 792 (1102)
|-.+|=.+......|..++..++..|.. ....+...+.++.++..|..++.....
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~-------------------------~~~ri~~lE~~r~~~~~l~~~~~~~~~ 58 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIAS-------------------------QKAAIENYNQLKEDYNTLKRELSDRDD 58 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHTTHHHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455667777888888888888877710 011122234444555556666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001316 793 QNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 826 (1102)
Q Consensus 793 e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~ 826 (1102)
++.+|..+....+.+=..|.-+.+.++.+|+.|+
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776665555555556555555555555554
No 114
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=93.40 E-value=0.027 Score=47.71 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=35.6
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccc
Q 001316 1054 HMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISD 1096 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~-pCgH~~~C~~C~~~~----~~CPiCR~~i~~ 1096 (1102)
..|.||++-..+-|+. +|||. ||..|.... ..||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999999999999 99998 999995432 569999998743
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.00 E-value=0.94 Score=54.56 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQ 737 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~q 737 (1102)
+++.+...+..+..++.+++..++.
T Consensus 468 l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333333344444444444444443
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.80 E-value=0.026 Score=57.12 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=36.1
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++||.....+..|..+++ .+..++.++--.-...++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 35788887665556777775 44555655433334567889999999999874
No 117
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.61 E-value=11 Score=38.98 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 838 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a 838 (1102)
.|+..|+..+..|..-...|+..|+-|.. + +-++.+=+.++..+.....-.|+-|+.||..
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdlEr----~---~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDLER----A---KRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH----H---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666665 2 2234455777888999999999999999985
No 118
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.56 E-value=0.5 Score=56.97 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 814 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
+++.+..+++++..+.....+.++..+.....+.+++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 119
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.00 E-value=0.28 Score=42.67 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
.-+|.+|+..|.+|.-++..+.+-++.++.+|.+++++|..|+.+++.++.
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345899999999999999999999999999999999999999999988763
No 120
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.60 E-value=11 Score=38.10 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 689 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 689 i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
|..|+.||++..--|..++-....++.+-.+.......+...+-.|+
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq 54 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ 54 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665544444454444333333333333333333
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.25 E-value=0.067 Score=54.93 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCCccccC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++||.+...+..+..++. .+..++...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 4678876655545666776 34445554433332 678999999999999863
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.39 E-value=0.091 Score=58.53 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.2
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3678775543334555665 45556655444445678899999999999875
No 123
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.21 E-value=8.6 Score=36.83 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 001316 910 ALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVG 958 (1102)
Q Consensus 910 aLeael~~k~~~eeEl~~~lee~k~~~~~Le~eL~~m~vlv~kL~ke~~ 958 (1102)
.|++.+.+|+.+.+-|+..+--+++.++.-.-.++.....+++|+-+.+
T Consensus 102 ELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE 150 (167)
T 4gkw_A 102 ELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENE 150 (167)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4778899999999998855555555444433333333445577766654
No 124
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.49 E-value=2.3 Score=38.79 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.+|-|++-.|+.....++.++..+.. +.......+.+|+.+|++|..+|.+|.++-.
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~-------~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRL-------ESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444443 2333356778889999999999999988743
No 125
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.24 E-value=7.3 Score=38.86 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhhhhHHHHHHHHHHhh----hhhhhHHHh----hHhHHHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIEN--GEASMANASMVDMQQTVTRLMSQCN----EKAFELEIK----SADNRILQ 714 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s--~~~s~~~~~~~e~~~~i~~l~~ql~----ek~~el~~k----~a~~~~lq 714 (1102)
+.++..|..++.+...++..|..++..- .|... -.....+.+++.+|...|= +.--+-+.+ ---+..|+
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~a-E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~ 121 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA-EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 121 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777877777766222 11100 0011233444444444331 111111111 11577899
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 715 EQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 715 eqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++|.+++..+..|+.+|..||..+
T Consensus 122 ~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 122 EQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999766
No 126
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=86.50 E-value=3.7 Score=39.40 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhH
Q 001316 643 GSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCS 722 (1102)
Q Consensus 643 ~~k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ 722 (1102)
+.-.+|+.|.++|..+..++..++. |.+..|..|+.++++.+.+|+... .+.+.+-.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~----------------E~q~~v~ql~~~i~~Le~eL~e~r-------~~~q~a~~ 68 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKT----------------ESQRVVLQLKGHVSELEADLAEQQ-------HLRQQAAD 68 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3345788888888888888877754 778888899999988877776443 23556677
Q ss_pred HHHHHHHHHHHHHHHH
Q 001316 723 ENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 723 ei~~L~~ev~~Lk~ql 738 (1102)
++..|+.+++.|+...
T Consensus 69 e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 69 DCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888887544
No 127
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=86.42 E-value=11 Score=34.54 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 001316 923 DEYRKKVEESKRREEALENDLANMWVLVAKLKKE 956 (1102)
Q Consensus 923 eEl~~~lee~k~~~~~Le~eL~~m~vlv~kL~ke 956 (1102)
.+|++.++++...-+.|+.|+.||+..+..+++.
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788889999999999999999999999888764
No 128
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.03 E-value=0.26 Score=54.22 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=32.0
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCc----eeEEeeccCCCCCcccc
Q 001316 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVN----GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N----~tIfaYGqTgSGKT~Tm 191 (1102)
||.+|+..---..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5555554444456666777777776654222 36788999999999865
No 129
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=85.97 E-value=25 Score=33.69 Aligned_cols=70 Identities=27% Similarity=0.330 Sum_probs=44.9
Q ss_pred HhhhhhhhHHHhhHhHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHH
Q 001316 695 QCNEKAFELEIKSADNRILQE---QLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQET 771 (1102)
Q Consensus 695 ql~ek~~el~~k~a~~~~lqe---qL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~ 771 (1102)
.|.+-+++..+-+.|++.|++ -|.++++....|-..|..|+..|
T Consensus 82 ~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKEL--------------------------------- 128 (167)
T 4gkw_A 82 LLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKEL--------------------------------- 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHH---------------------------------
Confidence 333334444444556666665 46778888888888888888666
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++-|.+...-...+.+|..||+.+.+
T Consensus 129 --EdEklK~~E~MdSFE~LkvENE~vke 154 (167)
T 4gkw_A 129 --ENEKLKAAENMDSFEKLSMENENLKE 154 (167)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 44444455566677777777776665
No 130
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.85 E-value=7.7 Score=34.54 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 836 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el 836 (1102)
+-++.|..++++=+..|.-|+-++..|.++|..|..+++.+.. ..+.|..+|.+|.+|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~---------------------~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH---------------------QREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHH
Confidence 4556666777777777788888888888888888888888777 7778888888888886
Q ss_pred H
Q 001316 837 L 837 (1102)
Q Consensus 837 ~ 837 (1102)
.
T Consensus 65 ~ 65 (81)
T 2jee_A 65 N 65 (81)
T ss_dssp H
T ss_pred H
Confidence 5
No 131
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.48 E-value=13 Score=34.81 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..++.|.++...|.+|+.++..++..+
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777666666544
No 132
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=84.82 E-value=0.21 Score=56.02 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=30.9
Q ss_pred cccccccccccc------eE--EeCCCCcccchhhhhc---------------CCCCCCCccccccee
Q 001316 1054 HMCKVCFESPTA------AI--LLPCRHFCLCKSCSLA---------------CSECPICRTKISDRL 1098 (1102)
Q Consensus 1054 ~~C~IC~~~~~~------~v--l~pCgH~~~C~~C~~~---------------~~~CPiCR~~i~~~i 1098 (1102)
..|.|||+.... .+ -.+|+|. |-..|-.. ...||.||.+|...+
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 479999985443 11 2379998 99999321 145999999987643
No 133
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.69 E-value=22 Score=32.90 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 001316 821 EVTKLSLQNA 830 (1102)
Q Consensus 821 ev~kL~~e~~ 830 (1102)
+|.-|...++
T Consensus 87 ev~~L~Rriq 96 (101)
T 3u1c_A 87 EVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444433333
No 134
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.25 E-value=1.1 Score=52.44 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc--C--CceeEEeeccCCCCCccccC--------------CC---CCCC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~--G--~N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~ 198 (1102)
.-+||.|-|-+..-+++.+.+..|+.. ..|. | +--.|+-||+.|+|||++.- |. ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 357888888776667777777777752 3343 2 23468999999999997642 11 1234
Q ss_pred CchhhHHHHHHHHhh
Q 001316 199 GIIPLAIKDVFSIIQ 213 (1102)
Q Consensus 199 GIipr~~~~LF~~i~ 213 (1102)
|--.+.++.+|....
T Consensus 257 Gese~~ir~lF~~A~ 271 (434)
T 4b4t_M 257 GEGAKLVRDAFALAK 271 (434)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 666666777776554
No 135
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=82.75 E-value=0.57 Score=39.36 Aligned_cols=44 Identities=20% Similarity=0.458 Sum_probs=30.4
Q ss_pred cccccccccccccceEEeCCCCc----ccchhhhh------cCCCCCCCccccc
Q 001316 1052 NSHMCKVCFESPTAAILLPCRHF----CLCKSCSL------ACSECPICRTKIS 1095 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~pCgH~----~~C~~C~~------~~~~CPiCR~~i~ 1095 (1102)
....|.||++...+-++.||.+. .+=..|.. ....||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999987766678997642 24345622 2356999999875
No 136
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.69 E-value=0.43 Score=51.16 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=22.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3789998865433333332 222322 23467888999999999865
No 137
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.41 E-value=4.2 Score=44.97 Aligned_cols=121 Identities=9% Similarity=0.139 Sum_probs=81.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceeeceecCCCC-ChhHHHhhhhHHHHHHHh-cCCce
Q 001316 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHA-NSQEVYDVAARPVVKAAM-EGVNG 175 (1102)
Q Consensus 98 ~~~~I~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~VF~~~~-~q~~Vy~~~~~plV~~~l-~G~N~ 175 (1102)
-+|.||+++=+-+-. .+..+.+.....+|. .....+.|.|++|++... +-.+++..-.+..++-++ .+.|+
T Consensus 57 lKG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nf 129 (333)
T 4etp_B 57 QKGTMRVYAYVMEQN-----LPENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNF 129 (333)
T ss_dssp HHTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCE
T ss_pred hcCcEEEEEEECccc-----CCccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCe
Confidence 357888888776622 222333333333443 233567899999996654 355666668899999999 99999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhhHHHHHHHHhhcC---CCceeEEEeehhhhhcce-eeecCCCC
Q 001316 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT---PGREFLLRVSYLEIYNEV-INDLLDPT 241 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~G~~~~~GIipr~~~~LF~~i~~~---~~~~~~v~vS~lEIYnE~-i~DLL~~~ 241 (1102)
.||..|..- .+..-..|+..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 130 slIsis~~~----------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 130 NLISLSTTP----------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EEEEEESSC----------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred eEEEecCCC----------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 999988642 123455666666554 135788999998887776 69999875
No 138
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.40 E-value=13 Score=33.08 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=16.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.|...++.+-..|.-||.||..||++-
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666654
No 139
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.18 E-value=0.55 Score=50.23 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=31.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHH-HHHh----cCCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAM----EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l----~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+.||.+.+.+...+.+.+. +..+- ...+ ......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 47889999877766666542 22211 0111 122345899999999999976
No 140
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.10 E-value=7.9 Score=38.00 Aligned_cols=67 Identities=28% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 839 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~ 839 (1102)
.-++++++..|..+...+..|+..|..+...+..-...+.-++..|.+++..|..++.+|+.++...
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666666666666666666666666666666777777779999999999998887643
No 141
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=81.94 E-value=63 Score=35.14 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHhhhhh
Q 001316 923 DEYRKKVEESKRREEALENDLANMWV-LVAKLKKEV 957 (1102)
Q Consensus 923 eEl~~~lee~k~~~~~Le~eL~~m~v-lv~kL~ke~ 957 (1102)
.++..++++++.+..-+-.++..=|+ +++.++..+
T Consensus 212 ~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 212 GHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Confidence 44555666666665555555544443 334444444
No 142
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.17 E-value=27 Score=40.73 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=17.1
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 779 EHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 818 (1102)
Q Consensus 779 ~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l 818 (1102)
+...|.++++++..+++.+..+...|+..-..|.+.-..|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence 3334444444454445444444444433333333333333
No 143
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.13 E-value=32 Score=33.08 Aligned_cols=106 Identities=13% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhh
Q 001316 690 TRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQ 769 (1102)
Q Consensus 690 ~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q 769 (1102)
.+|..+...+.-.+.--..++..++-+++..+.++..|+.....|+..+ .+...+ .
T Consensus 18 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l---------------------~e~e~~---~ 73 (129)
T 3tnu_B 18 EELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAI---------------------ADAEQR---G 73 (129)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH---H
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------------HHHHHH---H
Confidence 3333333333333333233444455555555555555555555555444 122211 1
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
..++.++......|+.+...+..++..... +...|+.=+-.|+.|+.+=|
T Consensus 74 ~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~---------------------EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 74 ELALKDARNKLAELEEALQKAKQDMARLLR---------------------EYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 223455666666666666666666666666 55566666666666655433
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.78 E-value=2.1 Score=49.91 Aligned_cols=113 Identities=23% Similarity=0.393 Sum_probs=64.2
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEe--c-CCC---------CCcceeeceecCCCCChhHHHhhhhHHHHH-H
Q 001316 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVR--N-EYN---------PATAYAFDRVFGPHANSQEVYDVAARPVVK-A 168 (1102)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~--~-~~~---------~~~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~ 168 (1102)
+.+|++......+ ...|..+....+...++. . ... ....-+||.|-|-+.--+.+.+.+..|+.. .
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 4566766655444 344555544443332221 1 111 112356777777655555666656555542 2
Q ss_pred Hhc--CC--ceeEEeeccCCCCCccccC--------------CC---CCCCCchhhHHHHHHHHhhcC
Q 001316 169 AME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 169 ~l~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~GIipr~~~~LF~~i~~~ 215 (1102)
.+. |. .-.|+-||+.|+|||+..- |. ....|--++.++++|......
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 333 32 2359999999999998752 11 234577888888999877643
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.65 E-value=0.76 Score=45.37 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344555555667789999999999999873
No 146
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.87 E-value=3 Score=40.64 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-+..|+++|.+++..+..||..+..||..+
T Consensus 104 r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 104 LNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999999999988654
No 147
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.86 E-value=20 Score=40.49 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 001316 719 NKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 798 (1102)
Q Consensus 719 ~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~ 798 (1102)
....+|..|+..|+.+++-- .+...|+..+. +.+|+.+....+.-......+..|.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~--------------~~~~~y~~~~~----------~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNS--------------KDSNTLTKNIV----------ELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHH----------HHHHHHHHhhccchHHHHHHHHHHH
Confidence 34455666666666666422 23445666666 5666666666666667777777788
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 799 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 799 ~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
....|-|.....-+..|+.|..-|+.+-.++.|||..+...+.+
T Consensus 120 ~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 120 SRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888888899999999999999999999988655544
No 148
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.86 E-value=0.57 Score=50.55 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-----HHhcCCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-----AAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-----~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.|.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 478899887665555555544443221 111123456899999999999865
No 149
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.09 E-value=0.84 Score=50.45 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=29.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+||.++. ...+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 588988653 2334444442 333333211 123468899999999999874
No 150
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.94 E-value=0.63 Score=51.23 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 367888887655555565554444321 1111 23456899999999999875
No 151
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=78.91 E-value=22 Score=32.07 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 841 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~ 841 (1102)
+.+|+..+..|..++..|..+ +.+.++.+.+|...+..|+.+|.....
T Consensus 37 rkele~~~~~l~~ek~~L~~q---------------------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGS---------------------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888777766 455667899999999999998875543
No 152
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.40 E-value=2.7 Score=49.10 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=49.7
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCccccC--------------CC---CCCC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~ 198 (1102)
..+||.|-|-+..-+++.+.+.-|+.. ..|.++ .-.|+-||+.|+|||++.- |+ ....
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 356788877665556666666666642 344332 3468999999999998642 11 2345
Q ss_pred CchhhHHHHHHHHhhcC
Q 001316 199 GIIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 199 GIipr~~~~LF~~i~~~ 215 (1102)
|--...+..+|......
T Consensus 257 Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 257 GESARIIREMFAYAKEH 273 (437)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 77778888888877653
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=78.36 E-value=0.64 Score=52.09 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
-+-..+..|-..+|+-||++|+|||.++
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3334445778889999999999999886
No 154
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.17 E-value=0.7 Score=51.23 Aligned_cols=44 Identities=18% Similarity=0.440 Sum_probs=29.2
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..|.||.+++. +.+... +...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 35889988764 233322 233344445556999999999999875
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.04 E-value=0.44 Score=50.76 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=29.3
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+-
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 35788988875443333322 221110 1122222 2238999999999999863
No 156
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.94 E-value=33 Score=33.08 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
+++++......|+.+...+..++..... +...|+.=+-.|+.|+.+=|
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~---------------------EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQ---------------------EYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666 55556666666666655433
No 157
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.49 E-value=48 Score=31.22 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
.|+..|+.....|..-.+.|+..|+-|.. -+-++.+=|.+++.+.....-.|+-|+.||..+.
T Consensus 42 ~El~~lr~~~~~l~~~iReLEq~NDDLER-------~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 42 DDLSQTRAIKEQLHKYVRELEQANDDLER-------AKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666667777776666 2223455677888899999999999999988544
No 158
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=77.49 E-value=0.62 Score=50.63 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=32.4
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1102)
...||.+.+.+..-..+.+.+..|+.. .++.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887554444555544444331 12222 3467999999999999875
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.42 E-value=0.86 Score=45.01 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 163 ~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344555555667788999999999998763
No 160
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.22 E-value=14 Score=33.34 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-----HHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEAS-----YAKELA--SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~-----~ak~lA--saa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
||++|++....+.-++.+|..+++.+..... |--+++ ..+..+|..|...|+.+..-..-|+.++.+-++.+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999888876543 333333 34667788888888888888888887777655544
No 161
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=77.18 E-value=53 Score=31.54 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001316 652 EREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 652 ~~el~dk~eei~~l~qki 669 (1102)
..+++.+++++..|..++
T Consensus 12 e~E~~~~~eel~~lke~l 29 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEAL 29 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555555
No 162
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=76.83 E-value=16 Score=31.86 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+.++|++.+.++.+|+..|..|+.+|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356778888889999999998888888
No 163
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.78 E-value=13 Score=36.53 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.-.++++....+.++.++.+|+..|+.+|
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666666555
No 164
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.29 E-value=56 Score=31.37 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 818 LAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 818 l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.++....|...+.++++++..-+..
T Consensus 95 eee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 95 EEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555556666665555544433
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.89 E-value=39 Score=33.48 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=21.6
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 780 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 780 ~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
...|.+|+..|..++..+.. ++.+|..+|..|=+-+.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~---------------------kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQ---------------------KLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 33445555555555555555 66677777766655533
No 166
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=75.52 E-value=0.82 Score=41.67 Aligned_cols=45 Identities=27% Similarity=0.781 Sum_probs=35.8
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001316 1054 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1100 (1102)
Q Consensus 1054 ~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~----~~CPiCR~~i~~~i~i 1100 (1102)
..|..|+-..++.| .|.-.++|-.|-..| ..||||..++...|++
T Consensus 29 ~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 37999999999777 465444999997765 4599999998887765
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.51 E-value=1.4 Score=45.41 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=27.7
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCccccC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l-~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
++||.+++. ..+..++. .+..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~-----~l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIG-----ALKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHH-----HHHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567766552 23344444 223333 3356778999999999998764
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.93 E-value=1.3 Score=43.57 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999874
No 169
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.89 E-value=10 Score=36.36 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 001316 719 NKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 797 (1102)
Q Consensus 719 ~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl 797 (1102)
+++..|..|..+|..|+..+.... .+...++..|+.++.+=.+|.+..+..+.....++..|..+++.+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~----------~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMK----------TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777662111 133456666666666666777777777777777777777777765
No 170
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.86 E-value=33 Score=33.01 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHhHHHHH
Q 001316 775 KLKLEHVQLSEENSGLHVQN 794 (1102)
Q Consensus 775 ~lk~~~~~L~ee~~~L~~e~ 794 (1102)
..-++|..|..-|-.|..|.
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555554
No 171
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.27 E-value=11 Score=33.48 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..+.++|++.+.++.+|+..|..|+.+|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~L 36 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSL 36 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456677888888888888888888877
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.14 E-value=1.3 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.3
Q ss_pred cCCceeEEeeccCCCCCcccc
Q 001316 171 EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999876
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.05 E-value=4.3 Score=46.87 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=50.9
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhc--CC--ceeEEeeccCCCCCccccC--------------CC---CCCCC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~--G~--N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~G 199 (1102)
-+||.|-|-+.--+++.+.+.-|+.. ..|. |. .-.|+-||+.|+|||+..- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 56788877666666777777777652 3444 32 3469999999999998742 11 23457
Q ss_pred chhhHHHHHHHHhhcC
Q 001316 200 IIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1102)
--.+.++++|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7788899999887654
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.52 E-value=1 Score=50.40 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=29.8
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCce--eEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG--TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~--tIfaYGqTgSGKT~Tm 191 (1102)
+.||.+++. +.+.. ....++..+..|... .|+-||++|+|||+..
T Consensus 41 ~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 567777763 33322 233355555566654 8999999999999876
No 175
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=73.23 E-value=12 Score=34.04 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Q 001316 768 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEE 800 (1102)
Q Consensus 768 ~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e 800 (1102)
...+.++++..++..|.+....|..++.+|..+
T Consensus 58 aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 58 AERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666665553
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=72.88 E-value=0.92 Score=51.25 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=32.2
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHH----hcCCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAA----MEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~----l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
...||.+++.+..-..+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35788888754444445544444432111 2344567999999999999876
No 177
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=72.78 E-value=10 Score=35.81 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGE 674 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~ 674 (1102)
+.|++.|...+..-+..+..|.+...++..
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544433
No 178
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.09 E-value=1.9 Score=43.15 Aligned_cols=65 Identities=28% Similarity=0.540 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccccccccccccc-----cceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001316 1027 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESP-----TAAILLPCRHFCLCKSCSLACS-----ECPICRT 1092 (1102)
Q Consensus 1027 ~~~~l~~~l~e~k~~~~~~~~~~~~~~~~C~IC~~~~-----~~~vl~pCgH~~~C~~C~~~~~-----~CPiCR~ 1092 (1102)
.+.+|+.+++.+..+..........+.+.|.+|.... ...+..-|.|. +|..|....+ .|-+|+.
T Consensus 42 Ri~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 42 RLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHH
Confidence 4455555555553332222111223567899998863 34444556665 6777753322 2666654
No 179
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.07 E-value=49 Score=37.37 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 001316 765 KVQSQETENEKLKLEHVQLSEENSGLHVQN 794 (1102)
Q Consensus 765 ~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~ 794 (1102)
++..|+..|.-|+.-+..+..+.++|+.-.
T Consensus 128 ~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 128 KVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555444
No 180
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=71.79 E-value=15 Score=33.94 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
..+++|++++..-|.|+.+..||+..+...--.. -+ ++|+. -+....++..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~D--PD-----------evNK~----------------tl~~R~~~Vs 85 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVD--PD-----------DVNKS----------------TLQNRRAAVS 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-----------HHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-----------HHHHH----------------HHHHHHHHHH
Confidence 3456788888888899999999987665532111 11 22222 2234466677
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001316 726 KLQEKVNLLEQQLACQN 742 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql~~~~ 742 (1102)
.|+.++..||++|+++.
T Consensus 86 alq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 86 TLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888885443
No 181
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.79 E-value=0.66 Score=50.25 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=28.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCCccccC
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l~G~----N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+-
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 4778888775543333322 221110 1122222 2238999999999999863
No 182
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.54 E-value=60 Score=30.82 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.++.|+.||.....+.+.|..+++.++..+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666444
No 183
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=71.14 E-value=44 Score=29.99 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001316 814 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 846 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~el~a~k~~~~~w 846 (1102)
||..|...+..+..+|+++.-++...+..+..|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edf 33 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 33 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999998877775544
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.94 E-value=1.7 Score=50.66 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=28.4
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+||.... ...+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCC-CCchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 4588987542 223333333 22223322 2213468899999999999874
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.31 E-value=1 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+....|+-||++|+|||+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455689999999999998763
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.85 E-value=0.73 Score=48.81 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred CceeEEeeccCCCCCcccc
Q 001316 173 VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm 191 (1102)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999876
No 187
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=69.65 E-value=1.9 Score=44.51 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1102)
.+..++.|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3456678866 67889999999987
No 188
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=69.41 E-value=17 Score=31.24 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVN 732 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~ 732 (1102)
-...||+.|..++.||..|++.+.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888877663
No 189
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.37 E-value=23 Score=41.47 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 808 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 808 Asaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
...-+..|++|..-|+.+-.++.|||-.+.++.+.
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333577888889999999999999998877765
No 190
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.36 E-value=62 Score=29.44 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 836 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el 836 (1102)
+.+..|+.++...|. ++-.|+.+|..|+.+...+... ....+...-..+|..|...|+.+..++++++-++
T Consensus 9 e~mq~LNdRlAsyId-------KVR~LEqqN~~Le~~i~~l~~~--~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 9 VELQELNDRFANLID-------KVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp CCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777766665544 4455566666666666665542 2334556667889999999999999999999997
Q ss_pred HHHHHhh
Q 001316 837 LAARESM 843 (1102)
Q Consensus 837 ~a~k~~~ 843 (1102)
......+
T Consensus 80 dnl~~~~ 86 (93)
T 3s4r_A 80 DNLAEDI 86 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7544443
No 191
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.34 E-value=2.2 Score=43.39 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455677866 677889999999764
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=68.29 E-value=1.2 Score=50.85 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=31.9
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+.||.+.+.+.--+.+...+..++.. .++.| ....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4577898887554444444444443331 11122 2357999999999999875
No 193
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=68.20 E-value=79 Score=29.56 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHH
Q 001316 650 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQE 729 (1102)
Q Consensus 650 kL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ 729 (1102)
.+.+..+.++.+|..+.+....- .-+-...+..|+.+|..+. .++..+++.|.........|-.
T Consensus 26 e~e~~k~eL~~~~~~~~~~~~~k---------~~eq~~~le~lk~eL~~~~-------~el~~lq~~l~~~~~~~~~l~~ 89 (107)
T 2no2_A 26 DLEREKKELEDSLERISDQGQRK---------TQEQLEVLESLKQELATSQ-------RELQVLQGSLETSAQSEANWAA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554222111 0123344555555555443 3444455555444444444444
Q ss_pred HHHH
Q 001316 730 KVNL 733 (1102)
Q Consensus 730 ev~~ 733 (1102)
.+..
T Consensus 90 ~~~~ 93 (107)
T 2no2_A 90 EFAE 93 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.05 E-value=1.3 Score=49.41 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1102)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 56788877554444555544444331 334442 246889999999999876
No 195
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.80 E-value=1.1 Score=47.78 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=28.7
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~----G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+.||.+.+.+..-+.+.+ .+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888875544344433 2221110 0111 22446899999999999876
No 196
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.72 E-value=2.3 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=17.0
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|....|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999998763
No 197
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=67.70 E-value=2.3 Score=43.20 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..+++|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 445677866 677789999999873
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.67 E-value=1.5 Score=47.70 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.4
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001316 172 GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999875
No 199
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.37 E-value=1e+02 Score=36.16 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLA 739 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~ 739 (1102)
....+.++..+|+++-..|+++-... + .+|+...+-|++++.+|++|+-.+.
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQ--l-snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEK--V-QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666665543211 2 5566677777777777777777664
No 200
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.96 E-value=1 Score=49.05 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=28.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKT~Tm 191 (1102)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777766555455555555555432 2344333 22899999999999875
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=65.47 E-value=3.4 Score=46.13 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=26.9
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCc-e--eEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-G--TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N-~--tIfaYGqTgSGKT~Tm 191 (1102)
|.++.+++ .+...+.+. ..+..++.|.. . .++-||++|+|||+++
T Consensus 14 ~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPH----REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTT----CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44555544 333333222 23445554533 3 6899999999999876
No 202
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=64.97 E-value=22 Score=36.36 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=12.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+|+||...+..|..|+.|+..|.++|
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql 36 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKL 36 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666
No 203
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.81 E-value=4.6 Score=35.36 Aligned_cols=45 Identities=16% Similarity=0.431 Sum_probs=29.5
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhhc------CCCCCCCccccccee
Q 001316 1053 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSLA------CSECPICRTKISDRL 1098 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl-~pCgH~~~C~~C~~~------~~~CPiCR~~i~~~i 1098 (1102)
-..|.||++-...-.. ..|+|. |=..|..+ -..||+||..+...+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3479999876543332 257776 66777431 257999999876544
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.68 E-value=13 Score=43.38 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=64.1
Q ss_pred EEEEeCCCChhh-hhcCCeEEEeeCCCEEEe---cCCCC---------CcceeeceecCCCCChhHHHhhhhHHHHH-HH
Q 001316 104 VTIRFRPLSERE-FQRGDEIAWYADGDKIVR---NEYNP---------ATAYAFDRVFGPHANSQEVYDVAARPVVK-AA 169 (1102)
Q Consensus 104 V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~---~~~~~---------~~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~ 169 (1102)
.+|++......+ +..|+.+....+...++. ....+ ...-+||.|-|-+.--+++.+.+.-|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 345666555444 455665555444333221 11111 12345677766555555566655555531 23
Q ss_pred hc--C--CceeEEeeccCCCCCccccC--------------CC---CCCCCchhhHHHHHHHHhhcC
Q 001316 170 ME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 170 l~--G--~N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~GIipr~~~~LF~~i~~~ 215 (1102)
+. | +--.|+-||+.|+|||...- |. ....|--.+.++.+|......
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 33 2 23579999999999997641 21 234588889999999887654
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.55 E-value=2.8 Score=46.68 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=25.8
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+.+++ |+.+.+ .+-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4566664 344433 33333445533337889999999999874
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.45 E-value=3.3 Score=48.66 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=49.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCccccC--------------CC---CCCCC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm~--------------G~---~~~~G 199 (1102)
.+||.|-|-+.--+++.+.+.-|+.. ..+.++ --.|+-||+.|+|||+..- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 67888877666556666666666542 344433 3469999999999997641 11 23457
Q ss_pred chhhHHHHHHHHhhcC
Q 001316 200 IIPLAIKDVFSIIQDT 215 (1102)
Q Consensus 200 Iipr~~~~LF~~i~~~ 215 (1102)
--.+.++.+|......
T Consensus 286 esek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 286 EGARMVRELFEMARTK 301 (467)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888876543
No 207
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.25 E-value=2.8 Score=43.95 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456778877 688899999999873
No 208
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.02 E-value=69 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=17.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
-|+-|..++++-..-...|..|+.-|
T Consensus 37 AQe~l~~~eaQAaTCNqTV~tL~~SL 62 (121)
T 3mq7_A 37 AQKGFQDVEAQAATANHTVMALMASL 62 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777655
No 209
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.99 E-value=52 Score=30.86 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 001316 768 SQETENEKLKLEHVQLSEENSGLHVQNQ 795 (1102)
Q Consensus 768 ~q~~E~e~lk~~~~~L~ee~~~L~~e~~ 795 (1102)
+..+.++++-.++..|.++...|..+++
T Consensus 80 aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 80 AERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544
No 210
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.94 E-value=2.3 Score=45.56 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.++..++.|.| +++.++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34456677866 678899999999873
No 211
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=63.72 E-value=20 Score=31.77 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKV 731 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev 731 (1102)
.+++..+|+||..+++++.-|+.++
T Consensus 53 K~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 53 KAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4689999999999999999888876
No 212
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.72 E-value=1.9 Score=45.38 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678876 678899999999873
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.58 E-value=3 Score=48.37 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+++..++..-.+.|...|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555666566788999999999999974
No 214
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.58 E-value=1e+02 Score=29.20 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001316 813 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 846 (1102)
Q Consensus 813 ~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~w 846 (1102)
.+|.+|...++.+..++++|.-++..++..+..+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999999999988877765444
No 215
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=63.41 E-value=1.7 Score=48.19 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=30.9
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1102)
+.||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888877554444455444444321 122332 246899999999999875
No 216
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.36 E-value=91 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=11.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 783 LSEENSGLHVQNQKLAEEASYAKELASAAAV 813 (1102)
Q Consensus 783 L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~ 813 (1102)
|..+.......+..+......+...+..|..
T Consensus 56 lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 56 TEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444433
No 217
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.70 E-value=2 Score=48.44 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=31.6
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~---N~tIfaYGqTgSGKT~Tm 191 (1102)
...||.|.+.+..-..+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888887655445555544444321 223332 235888999999999875
No 218
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.32 E-value=1.1e+02 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.077 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQ 795 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~ 795 (1102)
.-++++..++....|.+..|+.|+.
T Consensus 77 ~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 77 VSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888876
No 219
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=61.52 E-value=3.4 Score=43.05 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678876 567789999999874
No 220
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.40 E-value=40 Score=30.99 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 828 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e 828 (1102)
+.+.++.++..|..++.....++.+|..+....+.+=..|..+.+.++.+|+.|++.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888877777777777777777777777766543
No 221
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.39 E-value=35 Score=31.62 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASY----------AKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 837 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~----------ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~ 837 (1102)
.+|+.|+.+...|.+++..|+.++.+..-...| ..-. |+.-.....+++++|++++.+|...+.
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NP---a~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNP---TSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777652110000 0111 333344556788888888888877654
No 222
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.26 E-value=3.3 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=18.5
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..+++|.| ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 456677876 667789999999864
No 223
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.25 E-value=82 Score=30.29 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=16.9
Q ss_pred HHHHHHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 616 VKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 616 ~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s 672 (1102)
+..|...++.+...|....++- .+.+-+++.|..+|.....+...|+..+...
T Consensus 19 ~eel~~~~~~~~~~l~~~k~Ei----~elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 19 TEELNREVATNSELVQSGKSEI----SELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444455544443222221 2234455666666666655556666555443
No 224
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.43 E-value=3.3 Score=46.97 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+.+++.--.+.|...|+||||||.+|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4445555555688899999999999983
No 225
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.42 E-value=1e+02 Score=28.27 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.++++|...+.+......++..|...|
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444444444555555554444
No 226
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.41 E-value=4.2 Score=45.41 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.8
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G-~N~tIfaYGqTgSGKT~Tm 191 (1102)
.|.++.+++ ++...+.+.. .+..++.| ....|+-||++|+|||+.+
T Consensus 16 ~~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455555554 3333333332 34444444 3458999999999999876
No 227
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.35 E-value=61 Score=29.59 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHH
Q 001316 715 EQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQN 794 (1102)
Q Consensus 715 eqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~ 794 (1102)
+-|..+...|..|.+++...+..+ +.+.-|++++.-.......=+.....+.+++..|..++
T Consensus 16 eaL~~kq~~id~lke~~~q~~~~~------------------E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 16 EALVAKQELIDKLKEEAEQHKIVM------------------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444555555555555555433 34444443333222333333455566666666666666
Q ss_pred HHHHH
Q 001316 795 QKLAE 799 (1102)
Q Consensus 795 ~kl~~ 799 (1102)
..|..
T Consensus 78 ~~lq~ 82 (94)
T 3jsv_C 78 EQLQR 82 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66555
No 228
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=60.24 E-value=3 Score=49.36 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=30.1
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHH-HHh----cCCceeEEeeccCCCCCcccc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAM----EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l----~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..||.+.+....-..+++.+..++-. .++ ......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 45666665544445555544443221 111 234567999999999999865
No 229
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=59.99 E-value=36 Score=30.02 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHH
Q 001316 646 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENK 725 (1102)
Q Consensus 646 ~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~ 725 (1102)
..+++|+.++..-+.|+.+..||+..+...--.. .+| +|+. -+....+...
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D--PDe-----------vNK~----------------~~~~R~~~V~ 55 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELD--PDD-----------VNKS----------------TLQSRRAAVS 55 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCH-----------HHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcH-----------HHHH----------------HHHHHHHHHH
Confidence 3577889999999999999999997665532111 112 2222 2234456677
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001316 726 KLQEKVNLLEQQLACQN 742 (1102)
Q Consensus 726 ~L~~ev~~Lk~ql~~~~ 742 (1102)
.|+.++..|+++|+.+.
T Consensus 56 ~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 56 ALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888885443
No 230
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.79 E-value=2 Score=43.77 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..+++|.+ ++.+|+||+|||++..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 34556755 5678999999999863
No 231
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.02 E-value=1.6e+02 Score=34.15 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 001316 719 NKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 798 (1102)
Q Consensus 719 ~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~ 798 (1102)
.-...|.+|+..|..+.+-- .....|+..+. +-+++.+....+.-.........|.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~--------------~~s~~y~~~~~----------~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKY--------------KTSNRVIVETI----------NILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------------THHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhc--------------chHHHHHHHHH----------HHHHHHHhhhccchhHHHHHHHHHH
Confidence 44456777777777776422 23445666666 6667777777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 799 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 799 ~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
....|-|+....-+..|+.|..-|+.+-.++.|||..+.++.+.
T Consensus 118 ~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 118 RRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988999999999999999999999998877765
No 232
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=58.89 E-value=33 Score=32.13 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 726 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~ 726 (1102)
.+++|+.+|..-+.|+.+..||+..+...--.. -+ ++|+ .-|....+....
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~D--PD-----------evNK----------------~tl~~R~~~Vs~ 73 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKD--PD-----------ELNK----------------RTLTDREGVAVS 73 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-----------HHHH----------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-----------HHHH----------------HHHHHHHHHHHH
Confidence 477889999999999999999987665532111 11 2222 223345677778
Q ss_pred HHHHHHHHHHHHhhhcc
Q 001316 727 LQEKVNLLEQQLACQNG 743 (1102)
Q Consensus 727 L~~ev~~Lk~ql~~~~~ 743 (1102)
|+.+|..|+++|+.+..
T Consensus 74 lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 74 IQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999976655
No 233
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.87 E-value=3.8 Score=43.27 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..+++|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345677876 567789999999874
No 234
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=58.85 E-value=29 Score=30.76 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHH
Q 001316 645 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSEN 724 (1102)
Q Consensus 645 k~Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei 724 (1102)
-.++|.++..+.++++.+..|++.+..+.... +-..++...+.++|.-|..+.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q---------------------------~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAER---------------------------ERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHhhHHHHH
Confidence 35677888888888888888888775443211 111234455666666777777
Q ss_pred HHHHHHHHHH
Q 001316 725 KKLQEKVNLL 734 (1102)
Q Consensus 725 ~~L~~ev~~L 734 (1102)
.+|+..+..|
T Consensus 65 ~elRqgLakL 74 (79)
T 3cvf_A 65 SELREGLARL 74 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666554
No 235
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.80 E-value=1.5e+02 Score=29.54 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.....+++..+++.|.+|+.++...-..+
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556667777777777777776655544
No 236
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=58.62 E-value=2.2 Score=49.79 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=29.9
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G---~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+.||.|.+.+..-..+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888877443333333333333221 22333 2356889999999999876
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.53 E-value=4.4 Score=47.27 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.5
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHHHHhcCCc--eeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN--GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N--~tIfaYGqTgSGKT~Tm 191 (1102)
.|.||.|.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 4444432 2345566666654 36888999999999875
No 238
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=58.08 E-value=84 Score=30.17 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001316 719 NKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 719 ~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..+..+++|+.+|+.|+..+
T Consensus 10 ~l~~KvAElekkv~~lek~l 29 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQEL 29 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44677888999999999877
No 239
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=58.03 E-value=38 Score=34.55 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=26.7
Q ss_pred hHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHH
Q 001316 709 DNRILQEQLQ-NKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETE 772 (1102)
Q Consensus 709 ~~~~lqeqL~-~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E 772 (1102)
....|+.+|. -.+.--..|+..++.||.++ .+|.++++.++.+.+.|
T Consensus 134 ~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l-----------------~Py~ee~k~kl~~~lee 181 (185)
T 3r2p_A 134 KLHELQEKLSPLGEEMRDRARAHVDALRTHL-----------------APYSDELRQRLAARLEA 181 (185)
T ss_dssp HHTTTTTTSHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhhHHHHHHHHHHHHHH
Confidence 3444444442 22333455777777788777 47888887555544433
No 240
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=58.01 E-value=4.2 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456778764 77789999999874
No 241
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.98 E-value=2.8 Score=45.80 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001316 172 GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+....|+-||++|+|||+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 34567888999999999875
No 242
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.84 E-value=1.2e+02 Score=28.67 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 823 TKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 823 ~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
..+.+-...|+.+|..+++.+..|++|-
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQA 48 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQA 48 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566678888999999988888654
No 243
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=57.72 E-value=4.1 Score=44.73 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|-+..++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 445677774456889999999999873
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=56.96 E-value=4.8 Score=43.90 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHhcCC---ceeEEeeccCCCCCccccC
Q 001316 163 RPVVKAAMEGV---NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 163 ~plV~~~l~G~---N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...+..+++|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44567788887 3489999999999998753
No 245
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=56.89 E-value=1.2e+02 Score=34.88 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001316 751 GQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 830 (1102)
Q Consensus 751 ~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~ 830 (1102)
..+...+++.++++.....++|.+.|+|.+..-..+...+.+-.+.+..-.+....-...|...++++.++-+.+.++.+
T Consensus 329 ~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a 408 (602)
T 1cii_A 329 RNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLS 408 (602)
T ss_dssp CCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556678888888889999999999998888888888888888877776666666666777777777777777766666
Q ss_pred HHHHHHHHHHHh
Q 001316 831 KLEKELLAARES 842 (1102)
Q Consensus 831 ~l~~el~a~k~~ 842 (1102)
.+.++.+.++..
T Consensus 409 ~~~~KiAE~KrK 420 (602)
T 1cii_A 409 GINQKIAEEKRK 420 (602)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHh
Confidence 666665544433
No 246
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.49 E-value=4.7 Score=45.32 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3456678887 678899999999873
No 247
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=56.15 E-value=1.2e+02 Score=32.22 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001316 629 NLKRLVDQSVNDPDGSKVQIQNLEREIQEKRR-QMRILEQRI 669 (1102)
Q Consensus 629 ~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~e-ei~~l~qki 669 (1102)
.+..|.+.-..+.++.+.+++-...+++.+-+ .++.+.+++
T Consensus 78 ~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L 119 (243)
T 2a01_A 78 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKV 119 (243)
T ss_dssp HHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555566666666666665555555443 444444444
No 248
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.78 E-value=3.3 Score=45.73 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=26.9
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCCcccc
Q 001316 143 AFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.||.+.+. +.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 56766653 333332 222344333 344567999999999999865
No 249
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.55 E-value=3.1 Score=46.21 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001316 172 GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568999999999999876
No 250
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.53 E-value=4.7 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445677866 566789999999874
No 251
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=55.47 E-value=4.4 Score=42.54 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| +++.++||||||.+.
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHHH
Confidence 345667876 566679999999874
No 252
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=55.40 E-value=4.9 Score=41.80 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345677876 566789999999873
No 253
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=55.21 E-value=4.3 Score=42.57 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=18.8
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.++..+..|- .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3455566664 4677899999999765
No 254
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.19 E-value=1.3e+02 Score=27.68 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=7.0
Q ss_pred HHHHHHHHhhHHHHHH
Q 001316 809 SAAAVELKNLAGEVTK 824 (1102)
Q Consensus 809 saa~~elk~l~eev~k 824 (1102)
+.|..+..+|.-.+.-
T Consensus 82 ~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 82 AKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 255
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=54.64 E-value=46 Score=30.45 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHH
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 726 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~ 726 (1102)
.++.|+.++..-+.|+.+..||+..+...--.. -+ ++|+. -|.........
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D--PD-----------evNk~----------------~~~~R~~~V~~ 56 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELD--PD-----------DVNKS----------------TLQSRRAAVSA 56 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-----------HHHHH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-----------HHHHH----------------HHHHHHHHHHH
Confidence 467888999999999999999997665532111 11 22222 22344566777
Q ss_pred HHHHHHHHHHHHhhhcc
Q 001316 727 LQEKVNLLEQQLACQNG 743 (1102)
Q Consensus 727 L~~ev~~Lk~ql~~~~~ 743 (1102)
|+.+|..|+++|+.+..
T Consensus 57 lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 57 LETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888865554
No 256
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=54.45 E-value=14 Score=31.80 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=31.5
Q ss_pred hhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 697 NEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 697 ~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+++...+..|...++.|+..|+.++.+|.+|+.+++.++.-+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455666778889999999999999999999999888655
No 257
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.06 E-value=29 Score=33.81 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL 827 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~ 827 (1102)
+.+.+.++.++..|..+..-...++.+|..+....+.+=..|..+.+.++.+|+.|++
T Consensus 24 ~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 24 IENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677666666677777777776666666666666666666666665543
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.74 E-value=5 Score=43.32 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.5
Q ss_pred CceeEEeeccCCCCCccccC
Q 001316 173 VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-...|.-.|+||||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34577889999999999884
No 259
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.72 E-value=4.5 Score=44.58 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=26.1
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|+.+++... +...+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~--------~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDH--------AVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCT--------THHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHH--------HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 4666665332 22333344445533448999999999999863
No 260
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=52.78 E-value=5.4 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.1
Q ss_pred CceeEEeeccCCCCCccccC
Q 001316 173 VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.+..|+-||.+|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34558889999999998764
No 261
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=52.00 E-value=3.7 Score=42.27 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345667766 467789999999873
No 262
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.74 E-value=76 Score=31.43 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=16.3
Q ss_pred hhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 699 KAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 699 k~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
+..++++|...+..+++.+.+...+...++.++..|+
T Consensus 87 Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 87 LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444
No 263
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=51.58 E-value=3.9 Score=37.31 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=22.9
Q ss_pred ccccccccc-ccceEE--eCCCCcccchhhhhc
Q 001316 1054 HMCKVCFES-PTAAIL--LPCRHFCLCKSCSLA 1083 (1102)
Q Consensus 1054 ~~C~IC~~~-~~~~vl--~pCgH~~~C~~C~~~ 1083 (1102)
..|.||.+. ...++. ++|+|. ||..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999964 555665 899999 99999553
No 264
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.53 E-value=64 Score=30.86 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=19.8
Q ss_pred ccccccccccccce----EEeCCCCcccchhhhh
Q 001316 1053 SHMCKVCFESPTAA----ILLPCRHFCLCKSCSL 1082 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~----vl~pCgH~~~C~~C~~ 1082 (1102)
...|.+|...+.-. ---.||+. ||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v-fC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI-FCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE-ECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeE-EChHHhC
Confidence 34799998765421 12378888 9999954
No 265
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.39 E-value=6 Score=45.94 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1102)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44566777667789999999999977
No 266
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.34 E-value=90 Score=35.95 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHH
Q 001316 649 QNLEREIQEKRRQMRILEQRIIENGEA--SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKK 726 (1102)
Q Consensus 649 qkL~~el~dk~eei~~l~qki~~s~~~--s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~ 726 (1102)
+.+-.+|..+.+++..|.+.|...-.. .+..-....+.+...++..++.+.+.-+....+.++.|+++|......|..
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHH
Confidence 344455566666666666666443221 111111223445555566666555433333355777788887776666666
Q ss_pred HHHHHHHHHHH
Q 001316 727 LQEKVNLLEQQ 737 (1102)
Q Consensus 727 L~~ev~~Lk~q 737 (1102)
|+..|..|...
T Consensus 124 l~~~i~~l~~~ 134 (409)
T 1m1j_C 124 LKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 267
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.23 E-value=4.3 Score=42.73 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHhcCCc--eeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVN--GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N--~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..++.|.- -+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344555532 469999999999998864
No 268
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=51.11 E-value=8.2 Score=45.19 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=27.1
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.||.|++. +.. ...++..+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHH----HHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46766654 222 2234444444556678899999999998764
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=50.99 E-value=5.1 Score=38.72 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001316 172 GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999999865
No 270
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=50.68 E-value=1.3e+02 Score=29.68 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=67.2
Q ss_pred CchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCC---------------CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 605 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDP---------------DGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 605 ~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~---------------~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
|+|=+=.|++++..|+.-+.-...-|++-..-+.-.| +....++..|.++|-.|..+|+.|--.+
T Consensus 1 MaDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL 80 (151)
T 1yke_B 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (151)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555667888888888777777777776544333322 1223456668888888888888776655
Q ss_pred HHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 670 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 670 ~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
...+. +..+....|.+|..++.+.+-+|+ .+..+-..|.++|+.+-..+
T Consensus 81 Pg~~~------seeeQ~~ri~~Le~E~~~~~~el~--------------~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 81 PGVDV------SAEEQLRKIDMLQKKLVEVEDEKI--------------EAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp TTSSS------CHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 43322 233555677777777776554444 44444444555555544444
No 271
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.58 E-value=42 Score=29.17 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 912 EAALAEKEFLEDEYRKKVEESKRREEALENDL 943 (1102)
Q Consensus 912 eael~~k~~~eeEl~~~lee~k~~~~~Le~eL 943 (1102)
..+|++|+.+=+++.+++++....+..|..+|
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888899999999999999998888
No 272
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=50.42 E-value=6.1 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 273
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.30 E-value=6.2 Score=43.77 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345667774456788899999999864
No 274
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=50.23 E-value=6.5 Score=44.04 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345667775566788899999999874
No 275
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=50.09 E-value=5.3 Score=40.54 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999875
No 276
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=49.78 E-value=6.3 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.6
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 345677877 677889999999764
No 277
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.95 E-value=21 Score=36.53 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 693 MSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 693 ~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+.||+.-..-...-..+|..|.++|..++.||..|+++|+.|+.+.
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344443333333356888999999999999999999999999877
No 278
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=48.88 E-value=7.2 Score=42.27 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.1
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999998763
No 279
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=48.50 E-value=5.6 Score=44.28 Aligned_cols=42 Identities=19% Similarity=0.581 Sum_probs=31.1
Q ss_pred cccccccccccccceEEeC----CCC-cccchhhhhc--C--CCCCCCccc
Q 001316 1052 NSHMCKVCFESPTAAILLP----CRH-FCLCKSCSLA--C--SECPICRTK 1093 (1102)
Q Consensus 1052 ~~~~C~IC~~~~~~~vl~p----CgH-~~~C~~C~~~--~--~~CPiCR~~ 1093 (1102)
....|+||-..+.-.++.. =|+ ++.|..|... + .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4558999999998877753 343 4589999543 2 469999986
No 280
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.49 E-value=6.7 Score=41.40 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34566655 6677899999999853
No 281
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.98 E-value=1.1e+02 Score=29.64 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=57.8
Q ss_pred CchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCC---------------CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 605 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND---------------PDGSKVQIQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 605 ~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~---------------~~~~k~Q~qkL~~el~dk~eei~~l~qki 669 (1102)
|+|=+=.|++++..|+.-+.-...-|++-..-+.-. |+....++..|.++|-.|..+|+.|--.+
T Consensus 1 MaDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsL 80 (132)
T 1ykh_B 1 MTDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (132)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566677777777776666666665433222111 11223456678888888888888877666
Q ss_pred HHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHh
Q 001316 670 IENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIK 706 (1102)
Q Consensus 670 ~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k 706 (1102)
...+. +..+....|.+|..++.+.+-+|+.+
T Consensus 81 P~~~~------see~Q~~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 81 PGVDV------SAEEQLRKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp TTTTC------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53332 33355667888888777766655543
No 282
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.90 E-value=57 Score=28.92 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=29.8
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.+++-..+.+|++.+.++.+|..++..|+.++
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999999999988
No 283
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=47.84 E-value=5.9 Score=42.90 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999875
No 284
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.64 E-value=1.9e+02 Score=27.32 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV----TKLSLQNAKLEKE 835 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev----~kL~~e~~~l~~e 835 (1102)
.++++.+++.|.+..+.=+..+..|...++-++.-+..-..+|..=.+.| .+|..+|.-|..+
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 37777788888888777777777777777777766655444444444433 6666666555444
No 285
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=47.27 E-value=9.1 Score=43.00 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=19.8
Q ss_pred HHHhcC---CceeEEe--eccCCCCCccccC
Q 001316 167 KAAMEG---VNGTVFA--YGVTSSGKTHTMH 192 (1102)
Q Consensus 167 ~~~l~G---~N~tIfa--YGqTgSGKT~Tm~ 192 (1102)
..+..| -...++. ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 455555 4567888 9999999998763
No 286
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=46.91 E-value=7 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 445667766 677899999999764
No 287
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=46.85 E-value=7.6 Score=42.08 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..+++|.+ ++..++||+|||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345667765 567789999999875
No 288
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=46.80 E-value=4.8 Score=47.46 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=28.5
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHH-HHHhcC----CceeEEeeccCCCCCcccc
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVV-KAAMEG----VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV-~~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1102)
..++||.|.+.+..-+++.+. +..+- ...+.+ ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 346788887754433333331 11110 011222 2245899999999999875
No 289
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=46.29 E-value=7.7 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.6
Q ss_pred hcCCceeEEeeccCCCCCccccC
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.|.+ |...|+||||||.+|.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6778999999999863
No 290
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=46.22 E-value=4.1 Score=39.85 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcccccccccccccc-----ceEEeCCCCcccchhhhh
Q 001316 1027 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSL 1082 (1102)
Q Consensus 1027 ~~~~l~~~l~e~k~~~~~~~~~~~~~~~~C~IC~~~~~-----~~vl~pCgH~~~C~~C~~ 1082 (1102)
.+.+|+.+++.++.... ..+.+.|.+|..... ..+..-|.|. +|..|+.
T Consensus 35 ri~kL~~~l~~~k~~~~------~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~ 88 (134)
T 1zbd_B 35 RIGRLVDRLETMRKNVA------GDGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGV 88 (134)
T ss_dssp HHHHHHHHHHHHHHTCC------SCSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEE
T ss_pred HHHHHHHHHHHHHHHhc------cCCCccccccCCCcccccCCCCCCCCCCcc-cccccCC
Confidence 34455555555553321 135678999987663 2333445555 5666643
No 291
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=45.98 E-value=8.5 Score=44.89 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=27.2
Q ss_pred eceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 144 FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
||.|++ |+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 25 l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 25 LAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 455543 4555421 233444444565568999999999999875
No 292
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.93 E-value=18 Score=43.61 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=9.3
Q ss_pred hHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 707 SADNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 707 ~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
..+.+..++-|...+..+..|.++....+
T Consensus 348 ~~~~~~~~~~l~~~~~~~~~l~e~~~~~~ 376 (575)
T 2i1j_A 348 QEEMERSQANLLEAQDMILRLEEQLRQLQ 376 (575)
T ss_dssp HHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444
No 293
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.61 E-value=1.6e+02 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 819 AGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 819 ~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
+++|.-|...+..++.+|..+.+.+.
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777766655543
No 294
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.36 E-value=5.5 Score=43.85 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 368889999999998763
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.26 E-value=13 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=22.1
Q ss_pred hhHHHHHHHhcCC-----ceeEEeeccCCCCCcccc
Q 001316 161 AARPVVKAAMEGV-----NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 161 ~~~plV~~~l~G~-----N~tIfaYGqTgSGKT~Tm 191 (1102)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 5555666666553 246888999999999864
No 296
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=45.12 E-value=7.5 Score=42.58 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999863
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=44.70 E-value=6.4 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.-...|...|+||||||.+|.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 344678889999999999984
No 298
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=44.41 E-value=8.6 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 345677876 467889999999864
No 299
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.13 E-value=8.6 Score=46.07 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++..+..|.+.++++ ++||||||++++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444445576655554 999999999975
No 300
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=44.06 E-value=4.3e+02 Score=30.77 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 001316 723 ENKKLQEKVNLLEQ 736 (1102)
Q Consensus 723 ei~~L~~ev~~Lk~ 736 (1102)
|..+|.+++..|+.
T Consensus 228 E~e~L~~~~~~L~~ 241 (517)
T 4ad8_A 228 EEEGLNTELSRLSN 241 (517)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55666666666654
No 301
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=43.76 E-value=76 Score=31.16 Aligned_cols=7 Identities=43% Similarity=0.658 Sum_probs=2.5
Q ss_pred HHhHHHH
Q 001316 781 VQLSEEN 787 (1102)
Q Consensus 781 ~~L~ee~ 787 (1102)
..|.+++
T Consensus 104 aKLeEek 110 (146)
T 2xnx_M 104 AKLEEEK 110 (146)
T ss_dssp HHHGGGT
T ss_pred HHHHHHH
Confidence 3333333
No 302
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=43.31 E-value=4.1 Score=48.41 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=28.0
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~----N~tIfaYGqTgSGKT~Tm 191 (1102)
.++||.|.+.+..-..+.+ ++..+-. ..+..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4778888775433333332 1111110 122222 224899999999999876
No 303
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.94 E-value=7 Score=42.21 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=17.0
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001316 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4544458999999999998763
No 304
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.47 E-value=47 Score=29.82 Aligned_cols=26 Identities=8% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 647 QIQNLEREIQEKRRQMRILEQRIIEN 672 (1102)
Q Consensus 647 Q~qkL~~el~dk~eei~~l~qki~~s 672 (1102)
.++.|..+|..++.++..|+.+|...
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34566666666666666666666443
No 305
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.33 E-value=7.8 Score=42.86 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEeeccCCCCCccccC
Q 001316 177 VFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm~ 192 (1102)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999863
No 306
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.10 E-value=83 Score=29.16 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHH
Q 001316 721 CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQ 793 (1102)
Q Consensus 721 e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e 793 (1102)
+++-..|.=+|+.||.+| .+.++.+.+++..+.....|++.+|.....|..+...|..+
T Consensus 22 DNEKsal~YqVdlLKD~L--------------Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDML--------------LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777766 23344455555444444455555555555555555544443
No 307
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.59 E-value=21 Score=38.21 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHH
Q 001316 651 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEK 730 (1102)
Q Consensus 651 L~~el~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~e 730 (1102)
+.+++...+++++.|..++..+.+....... ...+.+|+ .++....+-|+.|.+.|+++..++..|++|
T Consensus 22 ~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~----~~~l~eL~-------~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 22 DAAELEQLRREAAVLREQLENAVGSHAPTRS----ARDIHQLE-------ARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp ------------------------------C----CHHHHHHH-------HHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhcccCcccchh----hhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777666666444221110000 11122333 333344667888999999999999999999
Q ss_pred HHHHHH
Q 001316 731 VNLLEQ 736 (1102)
Q Consensus 731 v~~Lk~ 736 (1102)
|+.|++
T Consensus 91 lerL~s 96 (251)
T 3m9b_A 91 VDRLGQ 96 (251)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 998885
No 308
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=41.25 E-value=11 Score=44.55 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.3
Q ss_pred HHHhcCCceeEEeeccCCCCCcccc
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..++.|.+..++..++||||||++.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4566774556788899999999873
No 309
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.10 E-value=1.5e+02 Score=25.98 Aligned_cols=51 Identities=31% Similarity=0.434 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.|++.|-.+...|.+-+..|+.--.-|-. +|+.|..++.-|..|+.+.+..
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~---------------------rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIA---------------------KVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHHHHH
Confidence 35666667777777777766665555555 8888999999999888877655
No 310
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=41.06 E-value=10 Score=46.32 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 35555543333 4567999999999964
No 311
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=40.85 E-value=3e+02 Score=28.11 Aligned_cols=21 Identities=5% Similarity=-0.068 Sum_probs=10.6
Q ss_pred chhhhHHHHHHHHHHHHHhhc
Q 001316 606 SDQMDLLVEQVKMLAGEIAFS 626 (1102)
Q Consensus 606 ~d~~d~l~eq~k~l~~e~a~~ 626 (1102)
..+.|.++.-+..-.+.+...
T Consensus 23 ~s~~e~v~~~~~~y~~~l~~~ 43 (191)
T 1nfn_A 23 GQRWELALGRFWDYLRWVQTL 43 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 345665555555544444443
No 312
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.57 E-value=7.9 Score=42.58 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001316 172 GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 313
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.45 E-value=69 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 776 LKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 776 lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
|+.+...|..++-+|+..-+.|..
T Consensus 8 lrkkiarlkkdnlqlerdeqnlek 31 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEK 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHH
Confidence 456666777777777777777666
No 314
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=40.44 E-value=39 Score=25.23 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARESMHSR 846 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~~~~w 846 (1102)
+-|+++|+.|..++..|+.|...-|+.+...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 4567788888888888888877666665544
No 315
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.38 E-value=13 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999986
No 316
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.33 E-value=11 Score=41.93 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3456677866 566789999999874
No 317
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.14 E-value=10 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~T 190 (1102)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445677865 67889999999984
No 318
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=40.10 E-value=48 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
++..+++.+.+...||+.|.=|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666666777777777777664
No 319
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=39.94 E-value=8 Score=41.57 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=16.5
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++.|.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 344555444 338999999998864
No 320
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.90 E-value=63 Score=28.49 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLH 791 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~ 791 (1102)
..|++|++-+-.|..+|++|++....|.+....+.
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677887788888888888887777776655444
No 321
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.58 E-value=47 Score=24.39 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=22.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
.-|+++|+.|..+|..|+.|...-|+.+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4577799999999999999987666543
No 322
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.55 E-value=12 Score=40.38 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=17.1
Q ss_pred hcCCceeEEeeccCCCCCccccC
Q 001316 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 170 l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.|.-..++-||+.|+|||+...
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34443348999999999998763
No 323
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=39.29 E-value=9.4 Score=42.77 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 324
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.03 E-value=9 Score=48.38 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=27.6
Q ss_pred eeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 143 ~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.||.|++.+ + ....++..+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 466666533 2 23334444455655567889999999999875
No 325
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.75 E-value=12 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred HHHHHHHhcC-C--ceeEEeeccCCCCCccccC
Q 001316 163 RPVVKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 163 ~plV~~~l~G-~--N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-+-+|.++.| + ...+.-+|++|+|||+.+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 3556777754 3 3467789999999998863
No 326
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.27 E-value=23 Score=32.78 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+++.++++...|..|+.+|..+...|.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666665
No 327
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=38.26 E-value=17 Score=40.16 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999876
No 328
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=38.16 E-value=14 Score=43.73 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|-+-.+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 445667665567889999999999874
No 329
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.92 E-value=68 Score=26.64 Aligned_cols=13 Identities=46% Similarity=0.432 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001316 821 EVTKLSLQNAKLE 833 (1102)
Q Consensus 821 ev~kL~~e~~~l~ 833 (1102)
+|..|..++..|.
T Consensus 44 ~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 44 EVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444443
No 330
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=37.83 E-value=85 Score=24.37 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV 792 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~ 792 (1102)
.|+++|..+...-..-+.+|+.+.+.|..||.+|..
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466666644433333345556666666666665543
No 331
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.81 E-value=4.9e+02 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=19.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 812 AVELKNLAGEVTKLSLQNAKLEKELLAARE 841 (1102)
Q Consensus 812 ~~elk~l~eev~kL~~e~~~l~~el~a~k~ 841 (1102)
...|..|...++.+.....+|+..+....+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777777777777665443
No 332
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.57 E-value=1.9e+02 Score=33.24 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001316 655 IQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 734 (1102)
Q Consensus 655 l~dk~eei~~l~qki~~s~~~s~~~~~~~e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~L 734 (1102)
+++..+++..+..+............ .+|+.+.+++..+...+-+..--..-+-.||+-|..+.++-. ++|+.|
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 448 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTH---LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEEL 448 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHH---HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHH
Q 001316 735 EQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLK 777 (1102)
Q Consensus 735 k~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk 777 (1102)
+-++ .+++.+|+.+.+|++++|
T Consensus 449 ~~~~---------------------~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 449 EGEI---------------------TTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------------------HHHHHHHHHHHHHHHHhc
No 333
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.44 E-value=66 Score=27.06 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASY 803 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ 803 (1102)
++.+..+...|..+|..|..++..|..|..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555553333
No 334
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.25 E-value=12 Score=40.86 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.. .++..++||||||.++
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 345566632 3567899999999874
No 335
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=37.23 E-value=13 Score=42.80 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.+ +++.++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445678866 577889999999864
No 336
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.19 E-value=7.9 Score=43.02 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667866 567799999999874
No 337
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=37.10 E-value=12 Score=45.29 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568889999999999874
No 338
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.04 E-value=16 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3456778877 677889999999864
No 339
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.83 E-value=2.1e+02 Score=25.30 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001316 434 IKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTK 501 (1102)
Q Consensus 434 i~~~~~ei~~Lk~el~~~~~~~~~~~~~~e~~~l~~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 501 (1102)
-.+++..+..-+.||..+++ ..+|+..=+++|++.-.+++..-.+.+.....|..+.++|.+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrr------T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKR------TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666553 233444434444444444443333333444444444444443
No 340
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.60 E-value=2.5e+02 Score=25.71 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
-|.=+|+..+..|.+++.+|........ ....+.+.++.-|..+-..|..+|....++
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~-------~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLD-------ARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch-------hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444566677777777766665533321 122334455666777777777777766553
No 341
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.54 E-value=41 Score=29.13 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
.+|+.++..|...+..|..+|+.|..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 342
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=36.06 E-value=14 Score=43.12 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677876 567789999999874
No 343
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=35.62 E-value=7.3 Score=34.45 Aligned_cols=29 Identities=28% Similarity=0.718 Sum_probs=23.9
Q ss_pred ccccccccccccceEEeCC----CCcccchhhhh
Q 001316 1053 SHMCKVCFESPTAAILLPC----RHFCLCKSCSL 1082 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pC----gH~~~C~~C~~ 1082 (1102)
...|.+|.++--++-|+.| .|. ||..|..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr 47 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSR 47 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccH
Confidence 4479999999988888888 466 9999954
No 344
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.30 E-value=1.2e+02 Score=24.72 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=9.1
Q ss_pred hHHHHHhHHHHHHHHHH
Q 001316 783 LSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 783 L~ee~~~L~~e~~kl~~ 799 (1102)
|..+...|...|.+|.+
T Consensus 14 l~~~l~~L~~rN~rL~~ 30 (51)
T 3m91_A 14 LEARIDSLAARNSKLME 30 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555555
No 345
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.19 E-value=46 Score=24.88 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLE 735 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk 735 (1102)
+|..|...+..++.+|+.|+++...|.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 677888888999999999999988776
No 346
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=34.93 E-value=4.6e+02 Score=28.24 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHh-hHhHHHHHHHHHhhhHH-HHHHHHHHHHHHHHH
Q 001316 686 QQTVTRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSE-NKKLQEKVNLLEQQL 738 (1102)
Q Consensus 686 ~~~i~~l~~ql~ek~~el~~k-~a~~~~lqeqL~~~e~e-i~~L~~ev~~Lk~ql 738 (1102)
++.+.+++.+|.-..-+|..+ ...+..++++|.---.+ ...++..++.|+.+|
T Consensus 43 ~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 43 GDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555544444433 33555555555433222 234555555666555
No 347
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=34.88 E-value=17 Score=45.59 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.5
Q ss_pred ceeeceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCCcccc
Q 001316 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 141 ~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G~N----~tIfaYGqTgSGKT~Tm 191 (1102)
...||.|-|-+..-+++.+.+.-|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777777666666676666556542 3555554 36999999999999764
No 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.27 E-value=22 Score=37.70 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=20.1
Q ss_pred hhHHHHHHHhcCCc-----eeEEeeccCCCCCcccc
Q 001316 161 AARPVVKAAMEGVN-----GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 161 ~~~plV~~~l~G~N-----~tIfaYGqTgSGKT~Tm 191 (1102)
+...++..++.|+. ..|+..|+.|||||+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33334445554433 35889999999999753
No 349
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.27 E-value=14 Score=41.57 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999875
No 350
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.05 E-value=16 Score=37.03 Aligned_cols=29 Identities=24% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCCccccC
Q 001316 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm~ 192 (1102)
+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 45677775 554 467889999999998764
No 351
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=33.93 E-value=16 Score=42.49 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445677876 566789999999874
No 352
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=33.76 E-value=1.7e+02 Score=30.51 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=8.0
Q ss_pred CCCchHHHHHHHHHHHH
Q 001316 641 PDGSKVQIQNLEREIQE 657 (1102)
Q Consensus 641 ~~~~k~Q~qkL~~el~d 657 (1102)
..+.+.++-....+++.
T Consensus 56 ~~~l~~~l~p~~~e~~~ 72 (216)
T 2lem_A 56 VSQLQERLGPLTRDFWD 72 (216)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 34444555544444443
No 353
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.69 E-value=72 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|..|.+.+.+.-.++.+|+.||.+|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44566677777888999999999999765
No 354
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.68 E-value=2.7e+02 Score=25.11 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHhhHHHHHHHHH
Q 001316 766 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASA------------------AAVELKNLAGEVTKLSL 827 (1102)
Q Consensus 766 ~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsa------------------a~~elk~l~eev~kL~~ 827 (1102)
+++.+.+..++.++...+......|..++..+.... .+|... ...=..+|.+..+.+..
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~---~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~ 79 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL---EELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQL 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777766655521 122221 34445667777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Q 001316 828 QNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 828 e~~~l~~el~a~k~~~~~we~qi 850 (1102)
+...++.++...+..+..|..++
T Consensus 80 ~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 80 REKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776554
No 355
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.66 E-value=9.8 Score=34.91 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=26.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC---CCCCCCcccccc
Q 001316 1053 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISD 1096 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~---~~CPiCR~~i~~ 1096 (1102)
...|++| ...+.+-=++. .|..|.... ..||-|.+++..
T Consensus 32 ~~~CP~C----q~eL~~~g~~~-hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQC----QHVLDQDNGHA-RCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSS----CSBEEEETTEE-EETTTCCEEEEEEECTTTCSBCEE
T ss_pred cccCccC----CCcceecCCEE-ECccccchhhccccCcchhhHHHH
Confidence 3589999 44444444443 699997655 449999998754
No 356
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.55 E-value=19 Score=41.91 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=24.5
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 151 ~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..|..++..+. ..+..| .+.++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 446776665433 233333 3488999999999998763
No 357
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.47 E-value=2.5e+02 Score=24.65 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++|-.++..|.-++..|..|+..+..
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55555566666666666666655555
No 358
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.42 E-value=18 Score=37.52 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 164 plV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555644 445799999999876
No 359
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=33.39 E-value=15 Score=37.40 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=19.9
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCCccccC
Q 001316 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm~ 192 (1102)
+.++.++. |+. ..+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 34566664 332 356678999999998764
No 360
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.39 E-value=74 Score=23.36 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|..|.+.+.+.-.++.+|+.||.+|+.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566677777888899999999999755
No 361
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.20 E-value=2.9e+02 Score=25.31 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
....++.+++....++..|+.++..++.-+
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666665443
No 362
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.98 E-value=50 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
.-|+++|+.|..+|..|++|...-|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346779999999999999997765544
No 363
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.96 E-value=22 Score=43.55 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=47.6
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCC---CCCCchh----hHHHHHHHHhhc
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIP----LAIKDVFSIIQD 214 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~G~~---~~~GIip----r~~~~LF~~i~~ 214 (1102)
|.|.. |.|..+|..-+.. ++..+-.|... ....|.|||||||||..-- ..|-||- ....+|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 44544 4788888777654 45566666533 3467999999999996310 1121111 223445554443
Q ss_pred C-CCceeEEEeehhhhh
Q 001316 215 T-PGREFLLRVSYLEIY 230 (1102)
Q Consensus 215 ~-~~~~~~v~vS~lEIY 230 (1102)
. ++..+...+||+.-|
T Consensus 76 ~~~~~~V~~fps~yd~~ 92 (664)
T 1c4o_A 76 LFPENAVEYFISYYDYY 92 (664)
T ss_dssp HCTTSEEEECCCGGGTS
T ss_pred HCCCCeEEEcCchhhcc
Confidence 2 444666777874444
No 364
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=32.77 E-value=3.8e+02 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHH
Q 001316 650 NLEREIQE-KRRQMRILEQRI 669 (1102)
Q Consensus 650 kL~~el~d-k~eei~~l~qki 669 (1102)
.|.+|++. ..+-++.+...+
T Consensus 55 el~qel~~~l~~~ld~l~~~~ 75 (165)
T 1gs9_A 55 QVTQELRALMDETMKELKAYK 75 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 46566655 445555555544
No 365
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=32.70 E-value=16 Score=42.05 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHhcCCceeEEeeccCCCCCcccc
Q 001316 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 167 ~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..++.|.+ ++..|+||+|||++.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34566644 667799999999985
No 366
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=32.61 E-value=16 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|..++. +..++..|+.|||||+|+.
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 344443 3456789999999999974
No 367
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.59 E-value=40 Score=34.03 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=11.4
Q ss_pred CCCCCCcccccceee
Q 001316 1085 SECPICRTKISDRLF 1099 (1102)
Q Consensus 1085 ~~CPiCR~~i~~~i~ 1099 (1102)
..||+|..+-..+.+
T Consensus 154 ~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCHHHcee
Confidence 479999988766554
No 368
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.50 E-value=1.6e+02 Score=25.44 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=39.3
Q ss_pred CchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001316 605 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRI 669 (1102)
Q Consensus 605 ~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q-~qkL~~el~dk~eei~~l~qki 669 (1102)
++.+-|-|+.+++.|..|+--.-.+.-+|.|...- +.+ .++|++||=..+-|.-.|.+|+
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~l-----k~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIAL-----KNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 44455666778888887777766666555554421 333 5678888888888888888876
No 369
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.49 E-value=1.5e+02 Score=24.83 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=13.4
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHH
Q 001316 777 KLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 777 k~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+.+...|..+...|..+|..|..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666555
No 370
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.46 E-value=16 Score=44.41 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+|..+++|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 577899999999875
No 371
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.29 E-value=2.3e+02 Score=25.78 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
++.+......|+.+...+..++.....
T Consensus 39 ~~~~q~~i~~lE~eL~~~r~e~~~ql~ 65 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAEIRDQMQQQLN 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444
No 372
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.22 E-value=1.6e+02 Score=26.15 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 713 LQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 713 lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.|..|...+.+|+.|+.++..|..+|
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999888
No 373
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.66 E-value=67 Score=26.23 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 708 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 708 a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+|...|+..+.+...++.+|.++++.|+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777788888888888888888777
No 374
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.63 E-value=21 Score=42.69 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 445666555556788899999999874
No 375
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.56 E-value=55 Score=24.21 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=22.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
+.-|+++|+.|..+|..|++|...-|+.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34577799999999999999987666543
No 376
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=31.32 E-value=23 Score=36.13 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=18.7
Q ss_pred HHHHHHHhc--CCceeEEeeccCCCCCcccc
Q 001316 163 RPVVKAAME--GVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 163 ~plV~~~l~--G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 23345667899999999876
No 377
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.16 E-value=18 Score=42.77 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
++..++.| ..|+-||++|+|||+..
T Consensus 34 l~~al~~~--~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSG--ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHT--CEEEEECCSSSSHHHHH
T ss_pred HHHHHhcC--CeeEeecCchHHHHHHH
Confidence 34444555 36788999999999875
No 378
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=30.86 E-value=18 Score=40.86 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4566777 45567899999998863
No 379
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=30.73 E-value=24 Score=37.68 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=26.5
Q ss_pred ccccccccccccceEEeC-CCCcccchhhhhc------CCCCCCCcccccceee
Q 001316 1053 SHMCKVCFESPTAAILLP-CRHFCLCKSCSLA------CSECPICRTKISDRLF 1099 (1102)
Q Consensus 1053 ~~~C~IC~~~~~~~vl~p-CgH~~~C~~C~~~------~~~CPiCR~~i~~~i~ 1099 (1102)
-..|.+|++-..--+.-| |+|. |=..|... -..||.|+.+...-++
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 448999965444333222 4444 44455322 2479999998766543
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=30.61 E-value=24 Score=38.88 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999997
No 381
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.59 E-value=73 Score=35.50 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+++.+..|..++.+.+..+.-..+.+..|+++|......|..|+.+|..|+..+
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666654333333355677788888877778888877777777655
No 382
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.56 E-value=76 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
+...|...+..+++++-.|+.||..|+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456777788899999999999988875
No 383
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.32 E-value=14 Score=35.64 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999853
No 384
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.32 E-value=51 Score=24.29 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 711 RILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 711 ~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
..|.+.+.+.-.++.+|+.||.+|+.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3566677788889999999999999654
No 385
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.28 E-value=89 Score=23.06 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|..|.+.+.+.-.++.+|+.||.+|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44566667777788899999999999755
No 386
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.25 E-value=21 Score=36.41 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCCcccc
Q 001316 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 164 plV~~~l~-G~N--~tIfaYGqTgSGKT~Tm 191 (1102)
+-+|.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45666774 432 45778899999999876
No 387
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.24 E-value=13 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.8
Q ss_pred HhcCCceeEEeeccCCCCCcccc
Q 001316 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999754
No 388
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=30.24 E-value=14 Score=36.74 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.2
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999999874
No 389
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.09 E-value=18 Score=45.35 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred cceeeceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCCcccc
Q 001316 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 140 ~~f~FD~VF~~~~~q~~Vy~~~~~plV~-~~l~G----~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578898888777666776655554442 22322 2246899999999999765
No 390
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.02 E-value=25 Score=35.71 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=14.8
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346778899999999875
No 391
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.97 E-value=93 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARESMH 844 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~~~ 844 (1102)
+-|+++|+.|..++..|+.|...-|+.+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45677899999999999988776666544
No 392
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.90 E-value=1.7e+02 Score=22.43 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=20.7
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001316 782 QLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE 821 (1102)
Q Consensus 782 ~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~ee 821 (1102)
.|+.+...|+.|++-|...--.-|+|..-..-|+.+|..+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444455555555555554443
No 393
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=29.75 E-value=19 Score=42.54 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...|+-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999998863
No 394
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.52 E-value=13 Score=42.04 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
.-++..|+||||||++|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 345667999999999874
No 395
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.52 E-value=6.9e+02 Score=28.59 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 001316 725 KKLQEKV 731 (1102)
Q Consensus 725 ~~L~~ev 731 (1102)
.+.+.++
T Consensus 384 ~~~~~~~ 390 (487)
T 3oja_A 384 AELDGTL 390 (487)
T ss_dssp HHHHHHH
T ss_pred hhhhhhH
Confidence 3334333
No 396
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=29.43 E-value=3.8e+02 Score=26.30 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHhHHHHHH
Q 001316 778 LEHVQLSEENSGLHVQNQ 795 (1102)
Q Consensus 778 ~~~~~L~ee~~~L~~e~~ 795 (1102)
..+..|..++..|..+.+
T Consensus 33 a~~~~le~e~~kl~~e~~ 50 (146)
T 2xnx_M 33 ATALEKELEEKKKALELA 50 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555544433
No 397
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.37 E-value=85 Score=23.16 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=21.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
.-|+++|+.|..+|..|+.|...-|+.+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4467799999999999999877665543
No 398
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=29.26 E-value=14 Score=39.39 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCCccccC
Q 001316 174 NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm~ 192 (1102)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999986
No 399
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.23 E-value=3e+02 Score=24.38 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 776 LKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 776 lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+......|+.+...+..+++....
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~ 56 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLD 56 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444433333
No 400
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.83 E-value=66 Score=34.48 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 001316 814 ELKNLAGEVTKLSLQNAKLEK 834 (1102)
Q Consensus 814 elk~l~eev~kL~~e~~~l~~ 834 (1102)
+|+++..++.+|+.|+.+|.+
T Consensus 76 ~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 76 TLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 444455588999889988876
No 401
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=28.79 E-value=22 Score=43.27 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||+|||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345667876 567789999999863
No 402
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.72 E-value=79 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=21.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 816 KNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 816 k~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
.-|+++|+.|..+|..|++|...-|+.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3467799999999999999877655543
No 403
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=28.66 E-value=17 Score=37.23 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 404
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=28.55 E-value=14 Score=40.48 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHhcCCceeEEeeccCCCCCcccc
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 405
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.47 E-value=95 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=22.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
++-|+++|+.|..++..++.|+..-++.+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45677799999999999999987666543
No 406
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.46 E-value=29 Score=43.04 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=27.4
Q ss_pred eeeceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 142 f~FD~VF~~~~~q~~Vy~~~~~plV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.||.|.+. +... ..++..+..+....|+-||++|+|||....
T Consensus 177 ~~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 177 DSLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 346666653 2222 234444445666678999999999998753
No 407
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.45 E-value=24 Score=42.57 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=4.2
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
.+.|.++...+.+++++|..+-.+-.++=..--.-+..+..+..-|.+++++-..+..+|..++..|++..
T Consensus 379 ~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~ 449 (575)
T 2i1j_A 379 KEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQ 449 (575)
T ss_dssp ---------------------------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333222211111112222333444445555555555555555555555543
No 408
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.11 E-value=88 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
++-|+++|+.|..++..|+.|...-++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3457779999999999999997765544
No 409
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.87 E-value=97 Score=27.63 Aligned_cols=30 Identities=43% Similarity=0.418 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
..|+++|......|.+++..|..+|+.|..
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665555
No 410
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.87 E-value=7.9e+02 Score=28.76 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001316 822 VTKLSLQNAKLEKELLAARESMHSRG 847 (1102)
Q Consensus 822 v~kL~~e~~~l~~el~a~k~~~~~we 847 (1102)
+.+...+.+.-++++.+-+..++.|+
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~e 107 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445544444445554
No 411
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=27.80 E-value=14 Score=42.46 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 001316 174 NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 174 N~tIfaYGqTgSGKT~Tm 191 (1102)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 466788999999999986
No 412
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=27.76 E-value=16 Score=36.71 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 413
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.64 E-value=3e+02 Score=23.87 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 825 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL 825 (1102)
..++.+|+..+..|......=..+-..+..|.+.+.+.-.-+.-||..|...+.+|
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444444555555555544444
No 414
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.56 E-value=18 Score=43.57 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.5
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001316 172 GVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 172 G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346678899999999999975
No 415
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.40 E-value=21 Score=36.78 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHhcC-C--ceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G-~--N~tIfaYGqTgSGKT~Tm~ 192 (1102)
+|.++.| + ...+.-+|++|+|||..+.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4555533 3 2467789999999998753
No 416
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=27.33 E-value=16 Score=39.46 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.0
Q ss_pred CceeEEeeccCCCCCcccc
Q 001316 173 VNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm 191 (1102)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999765
No 417
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.04 E-value=1.6e+02 Score=23.92 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001316 813 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 848 (1102)
Q Consensus 813 ~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~ 848 (1102)
..+..|...+..|.++|.+|..-|..++..+..-..
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999988877654433
No 418
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=27.03 E-value=33 Score=38.29 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|.-.|++|+|||.|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46677899999999987
No 419
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.99 E-value=26 Score=43.31 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
++..+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444445555668889999999999874
No 420
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.92 E-value=1.1e+02 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+..|.+.+.+.-.+..+|+.||.+|+.-+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45566677777888889999999999766
No 421
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.89 E-value=3.6e+02 Score=24.41 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=23.5
Q ss_pred HHhhHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001316 704 EIKSADNRILQEQLQNKCSENKKLQEKVNLL 734 (1102)
Q Consensus 704 ~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~L 734 (1102)
+.+.+.++.++..|.+++.-+..|.-|+..+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566677778888888888888888887666
No 422
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.87 E-value=65 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 708 ADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 708 a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+-+..|+.++.....++..|..+|..|++++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777778889999999999998776
No 423
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=26.64 E-value=17 Score=36.26 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999865
No 424
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.63 E-value=27 Score=43.30 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|+-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999875
No 425
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=26.48 E-value=99 Score=24.99 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHHHhhchHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001316 620 AGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQ 667 (1102)
Q Consensus 620 ~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~q 667 (1102)
..|+.....+|++|.++|.+ .-=+..|..+++..+.+|..++.
T Consensus 6 ~eeL~~DL~El~~Ll~~AkR-----~rVk~~L~~ei~~lE~ei~~~~~ 48 (50)
T 2a26_A 6 SEELQKDLEEVKVLLEKATR-----KRVRDALTAEKSKIETEIKNKMQ 48 (50)
T ss_dssp HHHHHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566666788888899876 33355788888888888876654
No 426
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.45 E-value=1.2e+02 Score=26.92 Aligned_cols=47 Identities=34% Similarity=0.384 Sum_probs=25.4
Q ss_pred CCChHHHHHHH---H-hhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 753 GTSDEYVDELR---K-KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 753 ~~~e~~~~el~---~-~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
..++.|-.++- + -|..=..|+++|......+.++...|..+|..|.+
T Consensus 16 ~pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 16 NPSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455655553 1 12222345666666666666666666666666655
No 427
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=26.45 E-value=19 Score=41.73 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=18.8
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.+. +++.|+||||||...
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 3456778664 567799999999873
No 428
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.45 E-value=75 Score=23.52 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARESM 843 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~~ 843 (1102)
++-|+++|+.|..+|..|+.|...-|+.+
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34577799999999999999987666543
No 429
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.26 E-value=17 Score=36.49 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.6
Q ss_pred EEeeccCCCCCcccc
Q 001316 177 VFAYGVTSSGKTHTM 191 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1102)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 430
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=26.23 E-value=33 Score=43.21 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 431
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.21 E-value=1.4e+02 Score=24.89 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001316 777 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 836 (1102)
Q Consensus 777 k~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el 836 (1102)
+.....|..+...|..+|..|.. +|..|..+...|..-|
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~---------------------ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQT---------------------EIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34455666777777777777776 5666666666665544
No 432
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.07 E-value=89 Score=23.11 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 001316 815 LKNLAGEVTKLSLQNAKLEKELLAARES 842 (1102)
Q Consensus 815 lk~l~eev~kL~~e~~~l~~el~a~k~~ 842 (1102)
++-|+++|+.|..+|..|+.+...-++.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3457779999999999999987755544
No 433
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=26.04 E-value=25 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.|..++. +..++..|..|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444444 3567779999999999874
No 434
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.84 E-value=3.4e+02 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
....++.+++.....+..|+.++..++.-+
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665555433
No 435
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.71 E-value=30 Score=42.75 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 436
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=25.69 E-value=24 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 344443 3346789999999999975
No 437
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=25.60 E-value=30 Score=39.33 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHH-----HhhhcCCCCcccccccccccccc-----ceEEeCCCCcccchhhhhcCCCCCCC
Q 001316 1026 PLVARLKARMQEMKEK-----EQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSLACSECPIC 1090 (1102)
Q Consensus 1026 ~~~~~l~~~l~e~k~~-----~~~~~~~~~~~~~~C~IC~~~~~-----~~vl~pCgH~~~C~~C~~~~~~CPiC 1090 (1102)
.|++.+...+..+++. .|.+....+..++.|.+|..-.. ..-.--||.. +|..|....+.||.-
T Consensus 325 ~W~~~i~~ai~~~~~~~~~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~-~h~~C~~~~~~C~~~ 398 (406)
T 2vrw_B 325 KWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAP-AHKECLGRVPPCGRH 398 (406)
T ss_dssp HHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCE-ECGGGGGGSCCC---
T ss_pred HHHHHHHHHHhhhhhccccCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCc-cchhhhhhCCCCCCC
Confidence 4666666665555422 24444455678889999954332 1222346666 677787766645443
No 438
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=25.53 E-value=26 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
|..++.+ ..++..|+.|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 3444443 456789999999999975
No 439
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.18 E-value=30 Score=44.57 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=17.8
Q ss_pred HHHHhcCCceeEEeeccCCCCCccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~T 190 (1102)
|..++.|. .++..|+||||||.+
T Consensus 48 I~~il~g~--~vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGD--SVFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTC--EEEEECCTTSCSHHH
T ss_pred HHHHHcCC--CEEEEECCCCcHHHH
Confidence 45667775 478899999999964
No 440
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=25.11 E-value=18 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999865
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.02 E-value=35 Score=38.63 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5778899999999997
No 442
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=24.99 E-value=21 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCccc
Q 001316 176 TVFAYGVTSSGKTHT 190 (1102)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1102)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 443
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=24.90 E-value=18 Score=36.89 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||..|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999887
No 444
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=24.86 E-value=1.1e+03 Score=29.45 Aligned_cols=59 Identities=29% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001316 772 ENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 835 (1102)
Q Consensus 772 E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~e 835 (1102)
|.|+.|.+.-.|..+....++.-+...+ |...|.|+-+|-.+ +-+.++|.++..+++.+
T Consensus 698 ~aE~~r~~Llel~a~s~aves~g~a~Ae----A~a~aea~~Ie~ea-~v~~a~l~a~a~~i~~~ 756 (861)
T 2zuo_A 698 EAEKARKELLELEAMSMAVESTGNAKAE----AESRAEAARIEGEG-SVLQAKLKAQALAIETE 756 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhhcchhHHH----HHHHHHHHHHhhHH-HHHHHHhhhHHHhhhhH
Confidence 3455566655555555555544444443 44455555444433 22344444444444443
No 445
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=24.68 E-value=21 Score=34.82 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCccc
Q 001316 176 TVFAYGVTSSGKTHT 190 (1102)
Q Consensus 176 tIfaYGqTgSGKT~T 190 (1102)
.|+..|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999984
No 446
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.67 E-value=20 Score=33.23 Aligned_cols=34 Identities=29% Similarity=0.841 Sum_probs=25.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC--CCCCCCccc
Q 001316 1055 MCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTK 1093 (1102)
Q Consensus 1055 ~C~IC~~~~~~~vl~pCgH~~~C~~C~~~~--~~CPiCR~~ 1093 (1102)
.|+|| +..+.|+.-+-.|.+|.+.. ..|.+|...
T Consensus 31 kC~iC-----Ds~Vrp~~~VrICdeCs~G~~~~rCIiCg~~ 66 (109)
T 2k0a_A 31 KCPIC-----DSYVRPKRKVRVCENCSFGKQAKNCIICNLN 66 (109)
T ss_dssp CCTTT-----CCCCCCCEECEEEHHHHTSSTTSBCTTTSSS
T ss_pred ccccc-----CCccCCcceEEECCcCCCCCcCCceEEcCCC
Confidence 79999 34556666666899998765 569999843
No 447
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=24.58 E-value=16 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCCccccCC
Q 001316 175 GTVFAYGVTSSGKTHTMHG 193 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~G 193 (1102)
..++-||.+|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999998753
No 448
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.54 E-value=19 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 001316 177 VFAYGVTSSGKTHTM 191 (1102)
Q Consensus 177 IfaYGqTgSGKT~Tm 191 (1102)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 449
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.50 E-value=23 Score=41.32 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=16.6
Q ss_pred HHhcCCceeEEeeccCCCCCccccC
Q 001316 168 AAMEGVNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 168 ~~l~G~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++.|.+ ++..|+||+|||.+..
T Consensus 124 ~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 124 EGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHhcCC--cEEEeCCCCCHHHHHH
Confidence 3444544 5677999999999864
No 450
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.44 E-value=14 Score=37.46 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999875
No 451
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=24.19 E-value=18 Score=43.49 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH-----HHhhhcCCCCccccccccccccccceEEeCCCCcccchhhhh
Q 001316 1026 PLVARLKARMQEMKE-----KEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSL 1082 (1102)
Q Consensus 1026 ~~~~~l~~~l~e~k~-----~~~~~~~~~~~~~~~C~IC~~~~~~~vl~pCgH~~~C~~C~~ 1082 (1102)
.|+..+...+....+ ..|.|....+..++.|.+| ...+.+.-.++..|..|..
T Consensus 497 ~Wi~~I~~ai~~~~~~~~~~~~H~F~~~~~~~~t~C~~C----~~~l~gl~~qg~~C~~C~~ 554 (587)
T 3ky9_A 497 KWMEQFEMAISNIYPENATANGHDFQMFSFEETTSCKAC----QMLLRGTFYQGYRCHRCRA 554 (587)
T ss_dssp HHHHHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTT----CSBCCSSSCCEEEETTTCC
T ss_pred HHHHHHHHHhhhhccccccccCCceeEEeCCCCcccccc----cccccccccCCcCCCCCCC
Confidence 467777766665552 3466777778889999999 4444444445555655543
No 452
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.13 E-value=21 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|+..|..|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999854
No 453
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.04 E-value=82 Score=23.32 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|..|.+.+.+.-.++.+|+.||.+|+.-|
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34566677778888999999999999654
No 454
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.00 E-value=3.7e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001316 773 NEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 840 (1102)
Q Consensus 773 ~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k 840 (1102)
+.++......|+.+...+..++..... +...|+.=+-+|+.|+.+=|
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~---------------------EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLR---------------------EYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhHHHHHHHH
Confidence 345555555666666666666665555 55556666666666655433
No 455
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=23.97 E-value=22 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|+..|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999864
No 456
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.84 E-value=3.8e+02 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQK 796 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~k 796 (1102)
+..-+++..|..-|-.|..|..-
T Consensus 52 ~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 52 QQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 45556666777777777766543
No 457
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.71 E-value=1.7e+02 Score=30.14 Aligned_cols=30 Identities=43% Similarity=0.418 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 770 ETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 770 ~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
..|+++|..+...|.++...|..+|+.|.+
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666767777777777777777766666
No 458
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.63 E-value=23 Score=39.01 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCcccc
Q 001316 175 GTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm 191 (1102)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999997
No 459
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.60 E-value=4.7e+02 Score=26.21 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 001316 727 LQEKVNLLEQQL 738 (1102)
Q Consensus 727 L~~ev~~Lk~ql 738 (1102)
++..++.|+.+|
T Consensus 109 ~~~~~e~lr~~l 120 (185)
T 3r2p_A 109 WQEEMELYRQKV 120 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 344555555555
No 460
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.54 E-value=31 Score=42.99 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 445677866 567789999999874
No 461
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.38 E-value=4.5e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=12.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q 001316 712 ILQEQLQNKCSENKKLQEKVNLLEQ 736 (1102)
Q Consensus 712 ~lqeqL~~~e~ei~~L~~ev~~Lk~ 736 (1102)
..++--.+.+-.+.+|..+|..+++
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~~ 43 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERISD 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555553
No 462
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.35 E-value=30 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001316 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 166 V~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 345577876 566789999999874
No 463
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.11 E-value=54 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999874
No 464
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.03 E-value=1.5e+02 Score=21.85 Aligned_cols=29 Identities=7% Similarity=0.136 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 710 NRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 710 ~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
|..|.+.+.+.-.++.+|+.||.+|+.-+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44566677777888899999999998654
No 465
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.93 E-value=3.5e+02 Score=23.01 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHH
Q 001316 722 SENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ 795 (1102)
Q Consensus 722 ~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~ 795 (1102)
.+...|+.|+..|+..+ . .....+++.. --+|+++..+|.++.+.+..++.
T Consensus 6 ~~~~~l~~E~~~lk~E~------~-----stSaQDeFAK------------WaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFN------N-----SISAQDNYAK------------WTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHH------T-----TSCTTTTHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------h-----ccchHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567889999999888 1 2222233332 34567777777777766665554
No 466
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=22.92 E-value=3.6e+02 Score=23.07 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 709 DNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 709 ~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
.|+.|..+|.++..||..|..=|..|+-+|
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888888888888888888
No 467
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.92 E-value=1.1e+02 Score=24.97 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 771 TENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 771 ~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
+++|.|+++...|...+..|..+++.+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444443
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=22.87 E-value=43 Score=37.93 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.8
Q ss_pred cCCceeEEeeccCCCCCcccc
Q 001316 171 EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.|.-..|+-+|+.|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667899999999999875
No 469
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.82 E-value=4.1e+02 Score=30.49 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=7.1
Q ss_pred HHHHhhhHHHHHHHHHH
Q 001316 715 EQLQNKCSENKKLQEKV 731 (1102)
Q Consensus 715 eqL~~~e~ei~~L~~ev 731 (1102)
++|+.+.++...|...+
T Consensus 48 ~elsn~ts~v~~Lvk~i 64 (409)
T 1m1j_C 48 QQATNSTGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 470
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.81 E-value=39 Score=41.65 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCCcccc
Q 001316 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.||. ++......+ ..+.|-||+.-|.+|||||.+.
T Consensus 76 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYA-LANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4664 333333333 3799999999999999999986
No 471
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=22.78 E-value=26 Score=36.26 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=9.2
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 472
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.70 E-value=30 Score=43.21 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=16.5
Q ss_pred cCCceeEEeeccCCCCCcccc
Q 001316 171 EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 171 ~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.|....++..|+||||||...
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHH
T ss_pred ccCCCcEEEEcCCCCCHHHHH
Confidence 444456788999999999875
No 473
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=22.68 E-value=23 Score=35.54 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999865
No 474
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=22.62 E-value=4.9e+02 Score=28.57 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhhhhhhhHHHh-hHhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHH
Q 001316 685 MQQTVTRLMSQCNEKAFELEIK-SADNRILQEQLQNKCSEN-KKLQEKVNLLEQQL 738 (1102)
Q Consensus 685 ~~~~i~~l~~ql~ek~~el~~k-~a~~~~lqeqL~~~e~ei-~~L~~ev~~Lk~ql 738 (1102)
+++.+.+++.+|.-..-++..+ ...+..++++|.---.+. ..+...++.|+.+|
T Consensus 112 L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L 167 (307)
T 2l7b_A 112 LGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 167 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444444444444444444333 225556666664444333 44555666777776
No 475
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=22.55 E-value=4.9e+02 Score=28.89 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHH
Q 001316 757 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAA------VELKNLAGEVTKLSLQNA 830 (1102)
Q Consensus 757 ~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~------~elk~l~eev~kL~~e~~ 830 (1102)
+.--.+-.++..|+..++.|.+-...-..-.+.-+.-+..+..-...+++|+-.++ .+.+++..|+..|..+..
T Consensus 25 Pag~aia~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~ 104 (326)
T 3k8w_A 25 AAGLAISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQ 104 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444555677888888888766555555555556666666677777888887764 577778887777777766
Q ss_pred HHHH
Q 001316 831 KLEK 834 (1102)
Q Consensus 831 ~l~~ 834 (1102)
.+..
T Consensus 105 ~iAN 108 (326)
T 3k8w_A 105 RVAE 108 (326)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 476
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.47 E-value=5.5e+02 Score=25.10 Aligned_cols=77 Identities=8% Similarity=0.015 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 850 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~~el~a~k~~~~~we~qi 850 (1102)
++..+....|...-..-...+..|....+-|+.+|.-|..-....+-++.-+..+..+.+..+..+...+..-+.++
T Consensus 34 dE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 34 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455444555556666666666777777666555555555555555555555555554444444444333
No 477
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=22.38 E-value=22 Score=39.01 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356677999999999974
No 478
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.32 E-value=23 Score=35.24 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999876
No 479
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.30 E-value=4e+02 Score=23.45 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001316 767 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 833 (1102)
Q Consensus 767 ~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~ 833 (1102)
.+-.+|++-|++....|.+-..+|..-+.+|.. |-..|...++.|...++.|+
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~--------------E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQ--------------EVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777776666 33344445555555554443
No 480
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=22.28 E-value=4.4e+02 Score=23.88 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhccCCcCCCCCCCCChHHHHHHHHhhhhhHHHH
Q 001316 694 SQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETEN 773 (1102)
Q Consensus 694 ~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql~~~~~~~~~~~~~~~~~e~~~~el~~~~~~q~~E~ 773 (1102)
.......-+|..-..+...+-+.|.+.+.+.+.+..+|..++..+ ..+...-.....+.
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~---------------------~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA---------------------ERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---------------------HHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001316 774 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 826 (1102)
Q Consensus 774 e~lk~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~ 826 (1102)
..++..+..+.++...|+.++.-... .+++|.
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~---------------------qLdkL~ 94 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQM---------------------QLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHhh
No 481
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.27 E-value=4.1e+02 Score=23.48 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHhhhhhHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 001316 753 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 799 (1102)
Q Consensus 753 ~~~e~~~~el~~~~~~q~~E~e~lk~~~~~L~ee~~~L~~e~~kl~~ 799 (1102)
..++.|-.++- |+-+.....-.++|..|..++..+.+
T Consensus 12 ~Pse~YWk~lA----------E~RR~AL~eaL~EN~~Lh~~ie~~~e 48 (79)
T 2zxx_A 12 NPSSQYWKEVA----------EQRRKALYEALKENEKLHKEIEQKDS 48 (79)
T ss_dssp CTTCTHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777665 55555555666666666666666666
No 482
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.22 E-value=2e+02 Score=24.01 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001316 777 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 833 (1102)
Q Consensus 777 k~~~~~L~ee~~~L~~e~~kl~~e~~~ak~lAsaa~~elk~l~eev~kL~~e~~~l~ 833 (1102)
+.+.+.|..-|..|+.|+..+.. ++.+|+.+|..|.
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~---------------------~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQR---------------------EIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHH---------------------HHHHHHhhhhhhc
No 483
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.19 E-value=26 Score=42.70 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.3
Q ss_pred CceeEEeeccCCCCCccccC
Q 001316 173 VNGTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 173 ~N~tIfaYGqTgSGKT~Tm~ 192 (1102)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46778899999999999975
No 484
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.18 E-value=34 Score=37.03 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccC
Q 001316 175 GTVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 175 ~tIfaYGqTgSGKT~Tm~ 192 (1102)
..++.||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678899999999998763
No 485
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.18 E-value=20 Score=42.45 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001316 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 165 lV~~~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+|..+++|.+ ++..++||+|||.+.
T Consensus 33 ~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 3456778876 456679999999864
No 486
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.17 E-value=23 Score=36.57 Aligned_cols=17 Identities=41% Similarity=0.409 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCccccC
Q 001316 176 TVFAYGVTSSGKTHTMH 192 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm~ 192 (1102)
.+.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998873
No 487
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.11 E-value=2.5e+02 Score=21.80 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001316 820 GEVTKLSLQNAKLEKEL 836 (1102)
Q Consensus 820 eev~kL~~e~~~l~~el 836 (1102)
+.|.-|+++|..|.+-+
T Consensus 24 ervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 24 ERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHh
Confidence 37788888888877754
No 488
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=22.02 E-value=35 Score=28.53 Aligned_cols=35 Identities=23% Similarity=0.692 Sum_probs=24.7
Q ss_pred ccccccccccceE---EeCCCCcccchhhhh----cCCCCCCC
Q 001316 1055 MCKVCFESPTAAI---LLPCRHFCLCKSCSL----ACSECPIC 1090 (1102)
Q Consensus 1055 ~C~IC~~~~~~~v---l~pCgH~~~C~~C~~----~~~~CPiC 1090 (1102)
.|-.|.....+.. ---|++. ||.+|.. .+..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 5888887765433 2356776 9999943 45779999
No 489
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.88 E-value=31 Score=39.73 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999884
No 490
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=21.73 E-value=50 Score=36.01 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=23.0
Q ss_pred hHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCCcccc
Q 001316 155 QEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 155 ~~Vy~~~~~plV~~~l--~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
..+++.++..+..... .+-...|.-.|.+|||||+.+
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 3455555554444322 233456777899999999875
No 491
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.71 E-value=7.1e+02 Score=28.53 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 692 LMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 692 l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
+..+..+.+--+.-....++.||.+|......|..|...|..|....
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344433333333466778899998888888888888888877644
No 492
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.70 E-value=2.5e+02 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001316 684 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLLEQQL 738 (1102)
Q Consensus 684 e~~~~i~~l~~ql~ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~Lk~ql 738 (1102)
++...|..++..|+.|+....-...++..+.-+|-..|..|..|+-+|..|..++
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 5556666777777777665555555777777888888888888888888888777
No 493
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.62 E-value=24 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 001316 176 TVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 176 tIfaYGqTgSGKT~Tm 191 (1102)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5567899999999765
No 494
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.56 E-value=43 Score=41.76 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=25.8
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCCcccc
Q 001316 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 156 ~Vy~~~~~plV~~~-l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
.||. ++......+ -.+.|-||+..|.+|||||.+.
T Consensus 154 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 154 HIFA-ISDVAYRSMLDDRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred cHHH-HHHHHHHHHHhhcCCcEEEEecCCCCcchHHH
Confidence 4665 333333333 3799999999999999999986
No 495
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=21.38 E-value=23 Score=39.95 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=15.2
Q ss_pred HhcCCceeEEeeccCCCCCcccc
Q 001316 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+-.|.+ |.-.|+||||||+++
T Consensus 172 i~~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCC--EEEEESSSSCHHHHH
T ss_pred HhcCCE--EEEECCCCCCHHHHH
Confidence 335654 444599999999986
No 496
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=21.37 E-value=23 Score=39.47 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=15.6
Q ss_pred HhcCCceeEEeeccCCCCCcccc
Q 001316 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 169 ~l~G~N~tIfaYGqTgSGKT~Tm 191 (1102)
+-.|- .+.-.|+||||||+++
T Consensus 168 i~~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTC--CEEEEESTTSCHHHHH
T ss_pred ccCCC--EEEEECCCCCCHHHHH
Confidence 33565 4556799999999876
No 497
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.35 E-value=2.5e+02 Score=26.01 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred CchhhhHHHHHHHHHHHHHhhchHHHHHHHhhhcCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 605 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRIIENG 673 (1102)
Q Consensus 605 ~~d~~d~l~eq~k~l~~e~a~~~s~Lk~l~e~a~~~~~~~k~Q-~qkL~~el~dk~eei~~l~qki~~s~ 673 (1102)
+..+|+.|.+..+..-+.+.-..--|+...++.+.+|++...+ +++=+..+...+.-|+.|++.+..+.
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=21.28 E-value=61 Score=37.62 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCChhHHHhhhhHHHHHHHhcCC----------ceeEEeeccCCCCCcccc
Q 001316 149 GPHANSQEVYDVAARPVVKAAMEGV----------NGTVFAYGVTSSGKTHTM 191 (1102)
Q Consensus 149 ~~~~~q~~Vy~~~~~plV~~~l~G~----------N~tIfaYGqTgSGKT~Tm 191 (1102)
....+..+.+..++..-+..++.+. ...|+..|.+|+|||+|+
T Consensus 62 ~~~~~~~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 62 PSVLERKEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHH
No 499
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.15 E-value=7.2e+02 Score=29.16 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHhhchHH-----HHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001316 599 HPIGGMTSDQMDLLVEQVKMLAGEIAFSSSN-----LKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG 673 (1102)
Q Consensus 599 ~~~~~~~~d~~d~l~eq~k~l~~e~a~~~s~-----Lk~l~e~a~~~~~~~k~Q~qkL~~el~dk~eei~~l~qki~~s~ 673 (1102)
+.....++=++.++|+....+...+...... + .++-.|-.+-+....+++.|..
T Consensus 33 ~~~~~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~---------------~~~~~ld~~~r~~~~~~~~l~~------ 91 (501)
T 1wle_A 33 EGYSALPLLDMESLCAYPEDAARALDLRKGELRSKDL---------------PGIISTWQELRQLREQIRSLEE------ 91 (501)
T ss_dssp TTSSCCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGH---------------HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred CcCCCCCccCHHHHHhCHHHHHHHHHHcCCCcchhHH---------------HHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred ccccccchhhhhHHHHHHHHHHhh----hhhhhHHHhhHhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001316 674 EASMANASMVDMQQTVTRLMSQCN----EKAFELEIKSADNRILQEQLQNKCSENKKLQEKVNLL 734 (1102)
Q Consensus 674 ~~s~~~~~~~e~~~~i~~l~~ql~----ek~~el~~k~a~~~~lqeqL~~~e~ei~~L~~ev~~L 734 (1102)
....++++|..++..-+ +..-+.+.-.++.+.+++++.+.+.+..++++++..+
T Consensus 92 -------~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 92 -------EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp -------HHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.12 E-value=1.2e+02 Score=23.18 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 001316 715 EQLQNKCSENKKLQEKVNLLEQQLACQ 741 (1102)
Q Consensus 715 eqL~~~e~ei~~L~~ev~~Lk~ql~~~ 741 (1102)
+.|.+.+++...|++++..|+-+++.+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!