BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001318
(1101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 159 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 207 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 198 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 256 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 302 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 157 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 205 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 196 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 254 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 300 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 333
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 152 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 200 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 191 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 249 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 295 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 140 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 188 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 221
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 179 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 237 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 283 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 141 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 189 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 180 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 238 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 284 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 136 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 184 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 175 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 233 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 279 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 131 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 179 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 170 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 228 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 274 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 135 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 183 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 174 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 232 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 278 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 917 SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 970
+ TG +T A SD H ++ L+V ++ I++T
Sbjct: 134 -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 971 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
+C+K + + + P++ FS + + + A LD T+
Sbjct: 181 QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 173 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 231 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 277 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS 907
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G+ T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
++WD+ G C L A DP V+ V ++ DGSL + + +I+ G ++
Sbjct: 135 RIWDVKTGKCLKTLPAH--SDP---VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502
++ D V+ + FS K + T D T+K+WD + G + GH+ Y +
Sbjct: 190 LIDDDNPP--VSFVKFSPNGKYILAATL--DNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003
C+K + + + P++ FS + + + A LD
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V+ V +SP+G + + +++I+ + G + I H G++D+A+S + L
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
++ DDKT+K+WD ++G +GH V+ C + I S + D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + G T+ +D + V F+ + +++ D + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644
D S Q L ++ D P S ++F+ +G + +T DN +K+ S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+N++ DD +++I++V + LKGHS + F+ N++VS D + +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 918 SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 971
+ TG +T A SD H ++ L+V ++ I++T +
Sbjct: 138 ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1006
C+K + + + P++ FS + + + A LD T+
Sbjct: 186 CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSD 919
I G +D+ + I+N++ E+ KL+GH+ + A N++ S+ D + +W SD
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446
++WD S L+ D V+ V +SP+G A + ++++ Y G ++ +
Sbjct: 177 RIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 447 EIDAHVGGVNDIAFSHPNKQLCV------------ITCGDDKTIKVWDATNGAKQYIFEG 494
H N++ C+ ++ +D + +W+ +G
Sbjct: 235 --------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 495 HEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYD 528
H V S H ENI I S AL D IK W D
Sbjct: 281 HTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG A V++++ +G ++ Q L H VN +AF P+ Q
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
G + +T G GV F +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 589 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 631
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 36/224 (16%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 399
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLW--- 453
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
G+ T+ + R V F +A DD ++K W
Sbjct: 454 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 494
Query: 589 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 631
+ + QLL ++ G +S R + F+ DG +A +++D +K+
Sbjct: 495 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 39/246 (15%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 71
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ + DDKT+K+W+ NG GH + V V + Q I S + D +K W +
Sbjct: 72 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 128
Query: 529 N-LGSRVDYEAPGRWCTTMAYSADGT---------------------RTYQGFRKRSLGV 566
L + + W +A+S DG +T G GV
Sbjct: 129 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 625
F +A DD ++K W+ + QLL ++ G +S R + F+ DG +A +++
Sbjct: 187 A-FSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASD 241
Query: 626 DNGIKI 631
D +K+
Sbjct: 242 DKTVKL 247
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 34/223 (15%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVWGVAFS-PDGQ-T 153
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 154 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVKLW--- 207
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
G+ T+ + R V F +A DD ++K W
Sbjct: 208 --------NRNGQLLQTLTGHSSSVRG-----------VAFSPDGQTIASASDDKTVKLW 248
Query: 589 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
+ + QLL ++ G + + F DG +A +++D +K+
Sbjct: 249 NRNG-QLLQTL--TGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
SV V +SPDG A V++++ +G ++ Q L H V +AFS P+ Q
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVRGVAFS-PDGQ-T 522
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
+ + DDKT+K+W+ NG GH + V+ V + Q I S + D +K W
Sbjct: 523 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASSDKTVKLW 576
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 442 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501
V++ ++AH V +AFS P+ Q + + DDKT+K+W+ NG GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 62
Query: 502 VCPHHKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGT------ 553
V + Q I S + D +K W + L + + + R +A+S DG
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR---GVAFSPDGQTIASAS 117
Query: 554 ---------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 598
+T G GV F +A DD ++K W+ + QLL +
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNRNG-QLLQT 175
Query: 599 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
+ G + + F+ DG +A +++D +K+
Sbjct: 176 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D+ IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + + V F D + + + ++
Sbjct: 496 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
SS + FS D Q + + D TV ++
Sbjct: 547 GHSSS--VWGVAFSPDGQTIASASSDKTVKLW 576
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 28/160 (17%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 191 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW- 976
+G + LQ TG H ++ + I + + VK W
Sbjct: 250 RNG------QLLQTLTG-------------HSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 977 -------VPRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
S+ + FS D Q + + D TV ++
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 396 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + + V F D + + + ++
Sbjct: 455 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
SS + FS D Q + + D TV ++
Sbjct: 506 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 535
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 18/178 (10%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + V F D + + + ++
Sbjct: 168 RNG------QLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 218
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC------RINPSAYLPAG 1029
SS + FS D Q + + D TV +++ L+ +N A+ P G
Sbjct: 219 GHSSS--VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + V F D + + + ++
Sbjct: 414 RNG------QLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT 464
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
SS + FS D Q + + D TV ++
Sbjct: 465 GHSSS--VRGVAFSPDGQTIASASDDKTVKLW 494
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + + V F D + + + ++
Sbjct: 86 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
SS + FS D Q + + D TV ++
Sbjct: 137 GHSSS--VWGVAFSPDGQTIASASDDKTVKLW 166
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N R ++ L GHS + G+AFS + S+ D + +W+
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 918 SDGWEKQKNRFLQIPTGRTPT 938
+G + LQ TG + +
Sbjct: 332 RNG------QHLQTLTGHSSS 346
Score = 36.6 bits (83), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D IA DD +++++N +++ L GHS + G+AFS + S+ D + +W+
Sbjct: 314 DGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
+G + LQ TG + + + V F D + + + ++
Sbjct: 373 RNG------QLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 978 PRESSAPITHATFSCDSQLVYACFLDATVCVF 1009
SS + FS D Q + + D TV ++
Sbjct: 424 GHSSS--VWGVAFSPDDQTIASASDDKTVKLW 453
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 392
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 393 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 452
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 572 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 601
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 918 SDGWEKQK 925
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 514 FSTALDGKIKAW 525
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 392
D+ KT + N+ +DFHP + +L G + LW ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 393 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 452
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 572 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 601
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D + DD +I+I++ + + L+GH ++ F L +++S D L +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 918 SDGWEKQK 925
S ++ +K
Sbjct: 257 SSTYKVEK 264
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 514 FSTALDGKIKAW 525
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 506 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 544
+NI++I + + D + W + G DY E P G +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 545 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 583
S G G +L V +D + R ++A D
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 584 SIKFWDMDSVQLLTSIDADGGLPASPRI 611
+I+ WD+++ +L+ ++ L R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 507
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 392
D+ KT + N+ +DFHP + +L G + LW ++ +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 393 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 452
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 572 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 601
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 514 FSTALDGKIKAW 525
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
L++ H GGV + ++H +++ D+T++VWD G ++FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 506 HKENIQFIFSTALDGKIKAW 525
+NI++I + + D + W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 507
+ H + + H K+ I+ D TI++WD NG Y +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR--CISASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551
+ +F+ S A DG I+ W ++ + Y T Y +D
Sbjct: 360 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
++N + G DD I++Y+ + +L GH + L ++H +LVS D + VW
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 188
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
V++ D T+ VWD YI GH +YS H+ + S + D I+ W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER--KRCISASXDTTIRIWDLE 340
Query: 529 N 529
N
Sbjct: 341 N 341
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
NI+ G D+++ +++V + L GH+ RI + H +S+ D+ + +W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 392
D+ KT + N+ +DFHP + +L G + +W ++ + +R+ +V
Sbjct: 4 DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 393 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 452
P++A G + R W GS +++++Y+ G++V ++ +AH
Sbjct: 54 -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 511
+ IA HP K V++ DD T+K+W+ N A + FEGHE V V + K+
Sbjct: 98 DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 512 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571
F S LD +K W +LG P TT ++R + V +
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 572 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 601
++ + A DD +IK WD + + +++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 513
GVN + + + +IT DD TIK+WD + EGH + V H + I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 514 FSTALDGKIKAW 525
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925
DD +I+I++ + + L+GH ++ F L +++S D L +W+S ++ +K
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 384 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 442
R+ VWD+ + + L+ LV +VN V D A +++++ + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 443 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502
R ++ H G+ + + + V++ D TI++WD GA + EGHE V +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562
+K I S A DGKIK W +L + +D AP GT + +
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 590
S V + + + +++ D +I WD
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 469 VITCGDDKTIKVWDA---TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
++TC D++I VWD T+ + + GH A V V + ++I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKYIVSASGDRTIKVW 281
Query: 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS 584
+ + RT G KR + +Q+ ++R + +G D +
Sbjct: 282 --------------------NTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNT 317
Query: 585 IKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
I+ WD++ L ++ L IRF+
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRC--IRFD 345
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 36/199 (18%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW------LYD 528
D TIK+WD + I GH V +C + E + I + + D ++ W + +
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERV--IITGSSDSTVRVWDVNTGEMLN 207
Query: 529 NLGSRVDYEAPGRW-------CTT--------MAYSADGT--RTYQGFRKRSLGVVQFDT 571
L + R+ C+ MA D T R G R ++ VV FD
Sbjct: 208 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-AVNVVDFD- 265
Query: 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
++A D +IK W+ + + + +++ A + R L+ ++DN I++
Sbjct: 266 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRL 320
Query: 632 LATSDG--IRLLRTFENLA 648
G +R+L E L
Sbjct: 321 WDIECGACLRVLEGHEELV 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 470 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 527
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 583
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 584 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 621
SIK WD++ Q + S + P + ++ DG L
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 622 VSTNDNGIKILATSDGIR 639
DN +++ + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 376 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 431
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 123 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 174
Query: 432 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 175 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 229
Query: 492 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 538
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 230 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 283
Query: 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568
P CT++A+SADG + G+ + V Q
Sbjct: 284 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469
V+ V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 470 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 527
++ DKTIK+W+ T G +Y + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 583
N + ++ + T+ S DG+ G + + + K+ + G D
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 584 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 621
SIK WD++ Q + S + P + ++ DG L
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 622 VSTNDNGIKILATSDGIR 639
DN +++ + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 38/210 (18%)
Query: 376 GSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYSRHIV 431
GSR++ + K+W+ LG C +Q + V+ V +SP+ S + + + +V
Sbjct: 146 GSRDKTI----KLWNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK-LV 197
Query: 432 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491
++++ H+ H G +N + S P+ LC + G D +WD G Y
Sbjct: 198 KVWNLANCKLKTNHI---GHTGYLNTVTVS-PDGSLCA-SGGKDGQAMLWDLNEGKHLYT 252
Query: 492 FEGHE-------AP-VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-----DYEA 538
+G + +P Y +C +I+ L+GKI + D L V E
Sbjct: 253 LDGGDIINALCFSPNRYWLCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEP 306
Query: 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568
P CT++A+SADG + G+ + V Q
Sbjct: 307 PQ--CTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 507
+ H V + F HP + +++ +D TIKVWD G + +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567
+ + + S + D IK W + + RT G ++ V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627
+ ++A D +IK W++ + + + G +R N+DG L+A +ND
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 628 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 663
++ ++AT + LR ++ S E+S +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919
+++ +D++I++++ + + LKGH+ + ++F H+ +L S AD + +W
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 920 GWE 922
G+E
Sbjct: 181 GFE 183
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
+++C DDKT++VWD N HE V S+ H + ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529
DKTIK+WD + G GH+ V V H +FI S A D ++ W Y N
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGGKFILSCADDKTLRVWDYKN 369
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 914 CVW 916
VW
Sbjct: 343 NVW 345
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 89/503 (17%), Positives = 175/503 (34%), Gaps = 74/503 (14%)
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
L + H V FS ++ + +CG DKT++V+ A G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565
+ +FI + ++D K+K W + + + TY ++ +
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--------------------NSMTGELVHTYDEHSEQ-VN 709
Query: 566 VVQFDTTKNRFLAA--GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623
F + + L A D +K WD++ + ++ G + RF+ D LLA
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM--FGHTNSVNHCRFSPDDKLLASC 767
Query: 624 TNDNGIKIL-ATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXX 682
+ D +K+ ATS R + + E+ + +
Sbjct: 768 SADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKI 827
Query: 683 XXM-VSIPGMNGDVRS-------LADVKPR----ITEESNDKSKVWKLTELSEPNQCRSL 730
+ G+ G++ + D P+ + S ++W S+ CR
Sbjct: 828 FLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG- 886
Query: 731 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790
+ + ++F+ G++ L + + LW+ ++ +NS+ V +
Sbjct: 887 ------HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENE 940
Query: 791 SGIMMTNDV------------TDSNPEEAVPCFALSKNDSYV-MSASGGKISLFNXXXXX 837
++ + + D E V C LS + Y+ G I +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 838 XXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897
+ +I+ DD+ IQ++N ++D+ L+GH + +
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLIS-SSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL 1058
Query: 898 SHALNVLVSSGADSQLCVWSSDG 920
+S+L WS DG
Sbjct: 1059 L----------KNSRLLSWSFDG 1071
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
+D IA D ++Q++ E ++K H + AFS + + D ++ +W
Sbjct: 631 EDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Query: 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECV 973
+S E + T + Q + F H L+ + L +++ + EC
Sbjct: 691 NSMTGE-------LVHTYDEHSEQVNC-CHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 974 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1026
+S + H FS D +L+ +C D T+ ++ A + R IN +
Sbjct: 743 NTMFGHTNS--VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNXXX-XXXXXXXXXXXXXXXXXXXHPQDNNII 862
E+ V C A S +D ++ + S K+ ++N + + ++
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922
A G D ++++++ E ++ + GH+ + FS +L S AD L +W +
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 923 KQKN 926
++K+
Sbjct: 783 ERKS 786
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
+SP L VA S++ V++++ +V + H+ V+ + FS +T D
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMFSPDGSSF--LTSSD 908
Query: 475 DKTIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524
D+TI++W+ K +F+ +E V +V H +Q I +G+
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLI-----NGRT-- 959
Query: 525 WLYDNLGSRVDY--EAPGRWCTT---MAYSADG-------------TRTYQGF--RKRSL 564
++DY EA C + Y A G R +Q K+++
Sbjct: 960 -------GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 624
+QF + +++ DD I+ W+ QL I G R K+ LL+ S
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNW---QLDKCIFLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 625 NDNGIKI 631
D +K+
Sbjct: 1070 -DGTVKV 1075
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 25/123 (20%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
D T+KVW+ G K+ F H+ V S C + +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSV 593
+ A+S D T LA GDD I+ W++ +
Sbjct: 1128 ELRGHNGCVRCSAFSVDST----------------------LLATGDDNGEIRIWNVSNG 1165
Query: 594 QLL 596
+LL
Sbjct: 1166 ELL 1168
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
IA G ++ +I+I + + + H K + + F+ L+SS D+++ VW+ W
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN---W 1038
Query: 922 EKQKNRFLQ 930
+ K FL+
Sbjct: 1039 QLDKCIFLR 1047
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 884 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 939
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 234
Query: 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 999
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 235 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 289
Query: 1000 CFL------DATVCVFSAANLKLR 1017
F+ D TV ++ NLKL+
Sbjct: 290 EFILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 463 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 515
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 191 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 249
Query: 516 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 561
A D K+ W N + VD C + SAD T R
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
Query: 562 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 606
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 914 CVW 916
VW
Sbjct: 347 HVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 884 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 939
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 236
Query: 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 999
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 237 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 291
Query: 1000 CFL------DATVCVFSAANLKLR 1017
F+ D TV ++ NLKL+
Sbjct: 292 EFILATGSADKTVALWDLRNLKLK 315
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 463 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 515
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 193 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 251
Query: 516 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 561
A D K+ W N + VD C + SAD T R
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Query: 562 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 606
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 914 CVW 916
VW
Sbjct: 349 HVW 351
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469
V V+ S DG ++++ G R+ + H V +AFS N+Q +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 470 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 526
++ D+TIK+W+ K I EG E + C N I S + D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 573
N R + +T+A S DG+ G + + + K
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 574 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 602
NR+ L A + IK WD++S ++ + D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 33/133 (24%)
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--PHHK 507
H G V+ +A S P+ LC + G D + +WD G K Y E + ++++C P+
Sbjct: 559 GHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPN-- 613
Query: 508 ENIQFIFSTALDGKIKAW------LYDNLGSRVDYEAPGR---------------WCTTM 546
++ A + IK W + ++L +VD +A +CT++
Sbjct: 614 ---RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKVIYCTSL 668
Query: 547 AYSADGTRTYQGF 559
+SADG+ + G+
Sbjct: 669 NWSADGSTLFSGY 681
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
D +++WD G F GH V SV +N Q I S + D IK W + LG
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGE-- 504
Query: 535 DYEAPGRWCT-TMAYSADGTRTYQGFRKRSLGVVQF--DTTKNRFLAAGDDFSIKFWDMD 591
C T++ +G R + + V+F +T + ++A D ++K W++
Sbjct: 505 --------CKYTISEGGEGHRDW-------VSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 592 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640
+ +L +++ G ++ + + DG L A D + + ++G +L
Sbjct: 550 NCKLRSTLAGHTGYVST--VAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
D +++++N+ +++S L GH+ ++ +A S ++ S G D + +W
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + + +DAH VN ++F+ P + + T DKT+
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 884 KLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFL---QIPTGRTPTA 939
+L+GH K GL+++ LN L+S+ D +C+W + K+ +R + I TG T
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-HRVIDAKNIFTGHTAVV 238
Query: 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 999
+ D + + V + +L I++T K P + T A +C S Y+
Sbjct: 239 E-DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---PSHTVDAHT-AEVNCLSFNPYS 293
Query: 1000 CFL------DATVCVFSAANLKLR 1017
F+ D TV ++ NLKL+
Sbjct: 294 EFILATGSADKTVALWDLRNLKLK 317
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 36/179 (20%)
Query: 463 PNKQLCVITCGDDKTIKVWDATNGAKQY-------IFEGHEAPVYSVCPHHKENIQFIFS 515
PN +++ DD TI +WD K++ IF GH A V V H F S
Sbjct: 195 PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GS 253
Query: 516 TALDGKIKAWLYDNLGSR-----VDYEAPGRWCTTM---------AYSADGTRTYQGFRK 561
A D K+ W N + VD C + SAD T R
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 562 RSLGVVQFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 606
L + F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 914 CVW 916
VW
Sbjct: 351 HVW 353
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 396
++ R N SS ++ F+ Q +L G N G+I +WD+ C+
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 397 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 449
PG SV+ VI W+ +F A S + I+ EV HL
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 450 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 501
+ G+ + HP V T +D +I +WD N Q + +GH+ + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 543
+ H++ + S+ D + W ++ + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 857 QDNNIIAIGMDDSSIQIY--NVRVDEVKS--KLKGHSKRITGLAFSHAL-NVLVSSGADS 911
+N IIA +D+ S+++Y N + + S + HS + + F+ NVL S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 912 QLCVWSSDGWEKQKNRFLQIPTGRTP 937
++ +W N+ + P+ TP
Sbjct: 137 EIFIW-------DMNKCTESPSNYTP 155
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 855 HPQDNNIIAIGM---DDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHA-LNVLVSSG 908
HP+++ +A +D SI I+++R +++ +GH K I L + H ++L+SSG
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 909 ADSQLCVWSSDGWEK 923
D+ + +W+ + E+
Sbjct: 283 RDNTVLLWNPESAEQ 297
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 503
H + H V+D+A S N I+ DKT+++WD G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 504 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 549
P +++ I S + +IK W L + S + E W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 29/50 (58%)
Query: 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D +++++++R + GH + +AFS ++S+GA+ ++ +W+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 587
L + + A+S DG LA GDD I+
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 588 WDMDSVQLLTS 598
W++ QLL S
Sbjct: 1154 WNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 671
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 805 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 862
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 508
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1001 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1056
Query: 509 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 566
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1057 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1099
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1100 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1148
Query: 627 NGIKILATSDG 637
I+I SDG
Sbjct: 1149 GEIRIWNVSDG 1159
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 779
Query: 535 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 833
Query: 579 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
A + ++ W++DS L D G L + F+
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 891
Query: 615 KDGCLLAVSTNDNGIKILAT 634
DG +++D I++ T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
Query: 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 968
S TG+ + Q F H L+ ++ L +++
Sbjct: 685 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1026
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 732 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1032
Query: 922 EKQKNRFLQ 930
+ FLQ
Sbjct: 1033 QTGDYVFLQ 1041
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V + ++ DG + ++Q++++ GD V + AH V D ++
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
+++ D T+KVW+ G + F H+ V S C + +F ST+ D K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 587
L + + A+S DG LA GDD I+
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 588 WDMDSVQLLTS 598
W++ QLL S
Sbjct: 1161 WNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468
+V +S DG + +Q++ G+++ L+I AH V AFS +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKL---LDIKAHEDEVLCCAFSSDDSY-- 678
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525
+ TC DK +K+WD+ G + ++ H V +K N + + + D +K W
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 805 EEAVPCFALSKNDSYVMSASGGK-ISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNII- 862
E+ V C A S +DSY+ + S K + +++ + N+++
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
A G +D ++++++ E ++ + GH+ + FS +L S AD L +W
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 35/191 (18%)
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE 508
H V I F+ K L I+ +D I+VW+ G Y+F + H+ V
Sbjct: 1008 GHKKAVRHIQFTADGKTL--ISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLLQDS 1063
Query: 509 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--AYSADGTRTYQGFRKRSLGV 566
+ S + DG +K W + + R++ + T + A S+D T+
Sbjct: 1064 RL---LSWSFDGTVKVW--NVITGRIERDFTCHQGTVLSCAISSDATK------------ 1106
Query: 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
F + D + K W D + L + G F+ DG LLA ++
Sbjct: 1107 ---------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA--FSLDGILLATGDDN 1155
Query: 627 NGIKILATSDG 637
I+I SDG
Sbjct: 1156 GEIRIWNVSDG 1166
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 53/260 (20%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
+S D S + V+I+ G V + D H VN F++ + L + T +
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTY---DEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
D +K+WD + GH V + C ++ + + S + DG ++ W + R
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPDD-ELLASCSADGTLRLWDVRSANERK 786
Query: 535 ----------------DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578
D E + C+ +SADG + + + V+ FD + LA
Sbjct: 787 SINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK---VLLFDIHTSGLLA 840
Query: 579 ------------------------AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 614
A + ++ W++DS L D G L + F+
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS 898
Query: 615 KDGCLLAVSTNDNGIKILAT 634
DG +++D I++ T
Sbjct: 899 PDGSSFLTASDDQTIRVWET 918
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
QD IA D ++Q++ E +K H + AFS + + + AD ++ +W
Sbjct: 632 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
Query: 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-----FHQDQIHFLVV---HETQLAIFETT 968
S TG+ + Q F H L+ ++ L +++
Sbjct: 692 DS-------------ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1026
+ EC +S + H FS D +L+ +C D T+ ++ + R IN +
Sbjct: 739 QKECRNTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
+A G +D +I+I + + V S GH K + + F+ L+SS DS + VW+ W
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN---W 1039
Query: 922 EKQKNRFLQ 930
+ FLQ
Sbjct: 1040 QTGDYVFLQ 1048
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 914 CVW 916
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 469 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 521
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 522 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 567
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 568 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 606
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 506
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 542
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRW 89
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 475
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 476 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 522
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
SLFG + I+ + +DAH VN ++F+ P + + T DKT+
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 480 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
+WD N K + FE H+ ++ V PH N + S+ D ++ W +G
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
P I+A G D ++ ++++R ++K + H I + +S H +L SSG D +L
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 914 CVW 916
VW
Sbjct: 345 NVW 347
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 469 VITCGDDKTIKVWDATNGAKQ-------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 521
+++ DD T+ +WD G K+ IF GH A V V H F S A D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 522 IKAW-LYDNLGSR----VDYEAPGRWCTTM---------AYSADGTRTYQGFRKRSLGVV 567
+ W N S+ VD C + SAD T R L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 568 QFDTTKNRFL-------------AAGDDFSIKFWDMDSV-QLLTSIDADGGLP 606
F++ K+ ++G D + WD+ + + ++ DA+ G P
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 494 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551
GH APV + CPH N I S + D + W + G + P
Sbjct: 79 GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 611
T +G KR V T +N L+AG D I WD+ + + ++ D +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 612 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661
+++DG L+ S D ++++ G + + R E ++P
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 907
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 908 GADSQLCVW 916
G D+ + VW
Sbjct: 151 GCDNVILVW 159
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 502
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 107/303 (35%), Gaps = 73/303 (24%)
Query: 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 443
RN VW+ A S + A D V V WS DGS V +V IY ++R
Sbjct: 113 RNVYVWN--ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 444 QHLEIDAHVG-----------GVNDIAFSH-----PNKQLCVI----------------- 470
A VG G A H N Q+ +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 471 ---TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAW 525
+ G+D +++WDA + ++ H A V +V CP + N+ +D +I W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-WQSNLLATGGGTMDKQIHFW 289
Query: 526 LYDNLGSRVDYEAPGRWCTTMAYS--ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583
G+RV+ G T++ +S + + GF +L +
Sbjct: 290 -NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI----------------- 331
Query: 584 SIKFWDMDSVQLLTSIDADGGLPA-SPRIRFNK---DGCLLAVSTNDNGIKILATSDGIR 639
W S L +D +PA R+ ++ DG +L+ + +D +K DG
Sbjct: 332 ----WSYSSSGLTKQVD----IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383
Query: 640 LLR 642
+ R
Sbjct: 384 VKR 386
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 506
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 542
+ + S + DGK+ W +N GRW
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN----------GRW 91
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 475
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 23 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 476 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 522
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 506
+AH ++D + K+L TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN----------GRWSQIAVHA 96
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 475
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRLATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 476 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 522
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKV 125
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 462 HPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKENIQFIFSTALDG 520
HPN+Q V T G D + +WD G + + HEA ++ V H N + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 521 KIKAW 525
+ W
Sbjct: 304 SLWHW 308
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 506
+AH ++D + K++ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 542
+ + S + DGK+ W +N GRW
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN----------GRW 89
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID---AHVGGVNDIAFSHPNKQLCVITCGDD 475
G S ++I+ G H ID H G V + ++HP + +C D
Sbjct: 21 GKRMATCSSDKTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 476 KTIKVWDATNG--AKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKI 522
+ +W NG ++ + H A V SV PH + + S+ DGK+
Sbjct: 77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS--DGKV 125
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 69/294 (23%)
Query: 371 GLWEVGSRERLVL-----RNFKVW--DLGACSMPL--QAALVKDPGVSVNRVI-WSPDGS 420
G+W R+ +++ R KVW + G C L + V+ + RV+ S D +
Sbjct: 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480
L +++ G + + HV V + + V++ D +KV
Sbjct: 221 L----------RVWDIETGQCLHVLM---GHVAAVRCVQYDGRR----VVSGAYDFMVKV 263
Query: 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQF----IFSTALDGKIKAWLYDNLGSRVDY 536
WD + +GH VYS +QF + S +LD I+ W D
Sbjct: 264 WDPETETCLHTLQGHTNRVYS--------LQFDGIHVVSGSLDTSIRVW---------DV 306
Query: 537 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQL 595
E + + T G + + G+ K+ L +G+ D ++K WD+ + Q
Sbjct: 307 E-----------TGNCIHTLTGHQSLTSGM----ELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 596 LTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKI--LATSDGIRLLRTFEN 646
L ++ + A ++FNK+ + S++D +K+ L T + IR L T E+
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 469 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
V++ D +I+VWD G + GH++ + K+NI + S D +K W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNI--LVSGNADSTVKIW--- 344
Query: 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 588
D + + +T QG K V KN + + DD ++K W
Sbjct: 345 ------DIK-----------TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 589 DMDS---VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
D+ + ++ L ++++ G RIR + + AV + +
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 32/148 (21%)
Query: 466 QLC---VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 522
Q C +++ DD T+KVW A G GH V+S ++NI I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV---------------- 566
K W + + G T R G R +L V
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 567 -----VQFDTTKNRFLAAGDDFSIKFWD 589
VQ+D R ++ DF +K WD
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWD 265
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921
+ G D+SI++++V L GH +G+ N+LVS ADS + + W
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI-----W 344
Query: 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950
+ + + LQ G + T +QF+++
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 859 NNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCV 915
+NI+ G DS+++I++++ + L+G H +T L F+ N +++S D + +
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL 386
Query: 916 W 916
W
Sbjct: 387 W 387
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----IDAHVGGVNDIAFSHPN 464
++ V W P SL V I++ + ++ I+ H V +A+S N
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--N 117
Query: 465 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHKENIQFIFSTALDG 520
+ TC DK++ +W+ ++Y + + H V V H E + + S++ D
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 521 KIKAWL-YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579
++ W YD+ D+E C + +GT F K GV R +
Sbjct: 176 TVRIWKDYDD-----DWE-----CVAVLNGHEGTVWSSDFDKTE-GVF-------RLCSG 217
Query: 580 GDDFSIKFW 588
DD +++ W
Sbjct: 218 SDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 359 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418
+LL G+ + +W ++E R F++ DL A+++ V V WS D
Sbjct: 71 SLLAAGSFDSTVSIW---AKEESADRTFEM-DL--------LAIIEGHENEVKGVAWSND 118
Query: 419 GSLFGVAYSRHIVQIY-SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 477
G V I+ + G+E + H V + + HP++ L + DD T
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDD-T 176
Query: 478 IKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527
+++W + + + GHE V+S E + + S + D ++ W Y
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 856 PQDNNIIAIGMDDSSIQIYNVR-------VDEVKSKLKGHSKRITGLAFS-HALNVLVSS 907
P ++N+IA G +D ++ ++ + + E L+GH+KR+ +A+ A NVL+S+
Sbjct: 91 PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 908 GADSQLCVW 916
G D+ + VW
Sbjct: 151 GXDNVILVW 159
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 491 IFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 548
+ GH APV + PH N I S + D + W + G + P
Sbjct: 76 LVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP--------- 123
Query: 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 608
T +G KR V T +N L+AG D I WD+ + + ++ D
Sbjct: 124 ----VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 609 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661
+ +++DG L+ S D ++++ G + + R E ++P
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSV 502
+ ++ H V +A+ HP Q +++ G D I VWD GA + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 509
H G ++ + F+ NK L ++ DD T+++W NG Q F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 510 IQFIFSTALDGKIKAW 525
+ S ++DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 752
G+ S+A + RI E + K WKLT ++E +L +++ L +++ GN+
Sbjct: 64 GEKNSVARL-ARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122
Query: 753 ILALASNAIHLLW 765
I+ N LW
Sbjct: 123 IVTGVENGELRLW 135
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 506
+AH ++D + K+ TC DKTIK+++ + I GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKRXA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549
+ + S + DGK+ W +N GRW ++
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN----------GRWSQIAVHA 96
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 31/168 (18%)
Query: 463 PNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAPVYSVCPHHKENIQFIFSTA 517
P+++ +IT D+T +WD T G + IF GH A V S+ + N S +
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-SINSLNANMFISGS 225
Query: 518 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577
D ++ W + ++ RTY G + + V+F RF
Sbjct: 226 CDTTVRLW-------------------DLRITSRAVRTYHG-HEGDINSVKFFPDGQRFG 265
Query: 578 AAGDDFSIKFWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLL 620
DD + + +DM + L + D LP + F+ G LL
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 471 TCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528
TC D+++K++D NG + I GHE PV+ V H + S + D K+ W +
Sbjct: 30 TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
Query: 529 NLGSRVDYEAPGR 541
N +E G
Sbjct: 90 NGTWEKSHEHAGH 102
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478
G+ S V+I+ G ++ ++ H G V +A++HP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 479 KVWDATNGA--KQYIFEGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
+W NG K + GH++ V SVC PH I S+ DG I S +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS--DGAI---------SLL 132
Query: 535 DYEAPGRW 542
Y G+W
Sbjct: 133 TYTGEGQW 140
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 454 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHH 506
GV +A S P + D+ ++VWD+ G ++ GH+ VYSV
Sbjct: 208 GVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV--F 264
Query: 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
+ Q + S +LD +K W N ++ D + P S TY G + L V
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN--------SGTCEVTYIGHKDFVLSV 316
Query: 567 VQFDTTKN--RFLAAGDDFSIKFWDMDS 592
TT+N L+ D + FWD S
Sbjct: 317 A---TTQNDEYILSGSKDRGVLFWDKKS 341
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 32/183 (17%)
Query: 455 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF 514
+ + FS K L T +D+ I++WD N I +GHE +YS+ + + +
Sbjct: 126 IRSVCFSPDGKFLA--TGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLV 181
Query: 515 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574
S + D ++ W + C+ DG T V
Sbjct: 182 SGSGDRTVRIW-----------DLRTGQCSLTLSIEDGVTT-----------VAVSPGDG 219
Query: 575 RFLAAGD-DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNG 628
+++AAG D +++ WD ++ L+ +D++ G + + F +DG + + D
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 629 IKI 631
+K+
Sbjct: 280 VKL 282
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D +A G +D I+I+++ ++ L+GH + I L + + + LVS D + +W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW- 192
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQS 941
D Q + L I G T A S
Sbjct: 193 -DLRTGQCSLTLSIEDGVTTVAVS 215
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 32/198 (16%)
Query: 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC--P 504
++ H V+D+A S N ++ D ++++W+ NG QY F GH V SV P
Sbjct: 62 RLEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564
+++ I S D ++ W G T++ +G +
Sbjct: 120 DNRQ----IVSGGRDNALRVW-----------NVKGECMHTLS---------RGAHTDWV 155
Query: 565 GVVQFDTTKNR--FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 622
V+F + + ++ G D +K WD+ + +L+T D G + + DG L A
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDGSLCAS 213
Query: 623 STNDNGIKILATSDGIRL 640
S D ++ + G L
Sbjct: 214 SDKDGVARLWDLTKGEAL 231
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920
D S++++N++ + + K GH+K + +AFS +VS G D+ L VW+ G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 472
V +SPD + +++++ G E L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 473 GDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502
G D +KVWD G +GH V SV
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/160 (17%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917
D +I G D+ ++++++ + + LKGH+ +T + S ++ SS D +
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL-- 222
Query: 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 977
W+ K L P Q + F ++ E + IF+ + + +
Sbjct: 223 ---WDLTKGEALSEMAAGAPINQ----ICFSPNRYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 978 PRESSAP-----ITHATFSCDSQLVYACFLDATVCVFSAA 1012
P + +S D +Y+ + D + V+ +
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 493 EGHEAPVYSVC--PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 550
+ H+ ++SV + KEN + + + +LD +K W + + R+D + +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD--ERLD----------LQWSL 76
Query: 551 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTSIDADGGLPAS 608
+G LGVV D + +AA D I+ WD+++ + + SIDA G +
Sbjct: 77 EG---------HQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDA 125
Query: 609 PRIRFNKDGCLLAVSTNDNGIKILATSDG 637
+ F+ D LA T+ + I G
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 505 HHKENIQFIFSTALDGKIKAW 525
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 505 HHKENIQFIFSTALDGKIKAW 525
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 250
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
F+T D L+D R D E M YS D + V F
Sbjct: 251 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 290
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ LA DDF+ WD
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 172
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 173 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
+T+ G + + + F N F DD + + +D+ +
Sbjct: 231 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 269
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
Q L + D + + F+K G LL +D
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 220 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 275 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 329
Query: 505 HHKENIQFIFSTALDGKIKAW 525
++ + + + D +K W
Sbjct: 330 GVTDDGMAVATGSWDSFLKIW 350
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 443
R ++W S ++ L + +V +V WSP G+ A I+ D+
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFE 96
Query: 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503
++ H V +A++ P+ L + TC DK++ VW+ + E E SV
Sbjct: 97 CVTTLEGHENEVKSVAWA-PSGNL-LATCSRDKSVWVWE--------VDEEDEYECVSVL 146
Query: 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563
H ++++ + + + YD+ ++ E W T +G + +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDT-VKLYREEEDDWVCCA--------TLEG-HEST 196
Query: 564 LGVVQFDTTKNRFLAAGDDFSIKFW 588
+ + FD + R + DD +++ W
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469
V V+W P L A V++Y D V ++ H V +AF ++L
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSGQRL-- 209
Query: 470 ITCGDDKTIKVWDATNGAKQYI 491
+C DD+T+++W +QY+
Sbjct: 210 ASCSDDRTVRIW------RQYL 225
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 505 HHKENIQFIFSTALDGKIKAW 525
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510
H G V ++ + P+ +L ++ D + K+WD G + F GHE+ + ++C N
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN- 239
Query: 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570
F+T D L+D R D E M YS D + V F
Sbjct: 240 --AFATGSD-DATCRLFD---LRADQE-------LMTYSHDNIIC-------GITSVSFS 279
Query: 571 TTKNRFLAAGDDFSIKFWD 589
+ LA DDF+ WD
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 27/213 (12%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473
++P G+ +I IY+ + VR E+ H G ++ F N+ ++T
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSS 161
Query: 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 533
D T +WD G + F GH V S+ + + S A D K W R
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL--SLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593
+T+ G + + + F N F DD + + +D+ +
Sbjct: 220 --------------------QTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 594 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626
Q L + D + + F+K G LL +D
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 387 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 444
K+WD+ G C +N + + P+G+ F +++ E+
Sbjct: 209 KLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504
+ D + G+ ++FS + L + DD VWDA + + GH+ V C
Sbjct: 264 YSH-DNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCL 318
Query: 505 HHKENIQFIFSTALDGKIKAW 525
++ + + + D +K W
Sbjct: 319 GVTDDGMAVATGSWDSFLKIW 339
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 135 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 222
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAMYTLSAQDEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K ++ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 129 --TIKGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 182 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIML 216
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ +I G DKTIKVW G GH V V P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 217 WNLAAKKAMYTLSAQDEVFSLAF 239
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
W+ D + + + H V IY G V+ H E+ H G V I ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 475 DKTIKVW 481
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 857 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 910
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 911 SQLCVWSSDG 920
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 534
DKT+++WD G F GH++ V SV K + I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVWTI------- 136
Query: 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594
G+ T+ D + R + + D ++AG+D +K W+++ Q
Sbjct: 137 ----KGQCLATLLGHNDWVS-----QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 595 LLTSIDAD--------GGLPASPRIRFNKDGCLLAVSTNDNGIKI 631
I+AD L ASP DG L+A + D I +
Sbjct: 188 ----IEADFIGHNSNINTLTASP------DGTLIASAGKDGEIXL 222
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 452 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHEAPV--YSVCPHHK- 507
VG +D+ +K+ I G DKTIKVW G GH V V P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 508 -ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566
++ I S D +KAW + D+ T+ S DGT + + +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 567 VQFDTTKNRF-LAAGDD-FSIKF 587
K + L+A D+ FS+ F
Sbjct: 223 WNLAAKKAXYTLSAQDEVFSLAF 245
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474
W+ D + + + H V IY G V+ H E+ H G V + ++ + + ++TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 475 DKTIKVW 481
D+ VW
Sbjct: 73 DRNAYVW 79
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 857 QDNNIIAIGMDDSSIQIYN------VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 910
+D IAI ++ + IY V+V E LK H+ ++TG+ ++ N +V+ G D
Sbjct: 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHE----LKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 911 SQLCVWSSDG 920
VW+ G
Sbjct: 74 RNAYVWTLKG 83
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 388 VWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 445
VWD+ G C +QA + VN V + P G F ++Y EV +
Sbjct: 224 VWDMRSGQC---VQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY 278
Query: 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502
+ ++ + G + + FS + L +D TI VWD G++ I GHE V ++
Sbjct: 279 SK-ESIIFGASSVDFSLSGRLL--FAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 518
A S N + ++T D T +WD +G F GH A V + E S
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 519 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV--VQFDTTKNRF 576
D K W D + + Q F V V++ + + F
Sbjct: 219 DKKAMVW---------DMRSG--------------QCVQAFETHESDVNSVRYYPSGDAF 255
Query: 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636
+ DD + + +D+ + + + + + + + F+ G LL ND I +
Sbjct: 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Query: 637 GIRL 640
G R+
Sbjct: 316 GSRV 319
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 447 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 506 HKENIQFIFSTALDGKIKAW 525
+ + + S +LDG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 447 EID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505
EID AHV + + F + L I+ D +K+W +G+ GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 506 HKENIQFIFSTALDGKIKAW 525
+ + + S +LDG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 509
AH G VN + F+ L +T G D +++W+++NG + G VC + K+
Sbjct: 243 AHNGKVNGLCFTSDGLHL--LTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 510 IQFIFSTA 517
++F S
Sbjct: 295 LKFTVSCG 302
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 626
N+ A G F I WDM D ++LL +I ADG + A P + R K+ + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 627 NG 628
+G
Sbjct: 107 SG 108
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 33.9 bits (76), Expect = 0.56, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I WDM D ++LL +I ADG + A P
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALP 85
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ WSS
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEWSS 364
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 455 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-SVCPHHKENIQFI 513
V D+ FS P+ VIT G D+ I +D +G E + PV + + Q
Sbjct: 209 VRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 267
Query: 514 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573
+ D I+ W TT T Q + +GVV T
Sbjct: 268 ATVGADATIRVWD----------------VTTSKCVQKWTLDKQQLGNQQVGVVA--TGN 309
Query: 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN 625
R ++ D ++ F+++ ++L +I L +P I + DG ++ S++
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
HP+ ++ A G + ++ + N++ + HS+ ITGLA+S H+ L S D +
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294
Query: 914 CVWSSD 919
V +D
Sbjct: 295 AVLDAD 300
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419
L+ G+ D+ WEV + + + + + V D V WS DG
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPK----------AQQMHTGPVLD-------VCWSDDG 98
Query: 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479
S A +++ Q ++I H V I + CV+T DKT+K
Sbjct: 99 SKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 480 VWD 482
WD
Sbjct: 155 FWD 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQL 913
HPQ + + G ++ ++ + + + HS+ +TGL FS H++ L S D L
Sbjct: 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282
Query: 914 CV 915
V
Sbjct: 283 AV 284
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 448 IDAHVGGVNDIAFSHPNKQLCV--------ITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499
+D H G V H + C+ ++CG+D+T+++W NG+ + + +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269
Query: 500 YSV 502
+SV
Sbjct: 270 WSV 272
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 384 RNFKVWDLGACSMPLQA--ALVKDPGV---SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438
+ KVW G+ LQA A V D V S N+ + + + + +++ +S
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIH 183
Query: 439 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498
D VR H+ V+D F I+C +D IK+ D G +EGHE+
Sbjct: 184 NDVVR-------HLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESF 227
Query: 499 VYSV 502
VY +
Sbjct: 228 VYCI 231
>pdb|3KXV|A Chain A, Structure Of Complement Factor H Variant Q1139a
Length = 133
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|2XQW|C Chain C, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 133
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGGITSFP 26
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 61 DSTGKCGPPPPIDNGDITSFP 81
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 626
N+ A G F I W+M D ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 574 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASPRI----RFNKDGCLLAVSTND 626
N+ A G F I W +MD ++LL +I ADG + A P + R K+ + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 627 NG 628
+G
Sbjct: 103 SG 104
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 609
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 82
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 83
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 609
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALP 81
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 609
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALP 81
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFW---DMDSVQLLTSIDADGGLPASP 609
N+ A G F I W +MD ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALP 81
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 78
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 80
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 81
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 574 NRFLAAGDDFSIKFWDM---DSVQLLTSIDADGGLPASP 609
N+ A G F I W+M D ++LL +I ADG + A P
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALP 82
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
+A+GM+ S++++ +V + K +L H + L F++ VS+G D+ L W
Sbjct: 239 LAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 861 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 219
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 861 IIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918
I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW S
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 208
>pdb|3RJ3|D Chain D, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|E Chain E, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
pdb|3RJ3|F Chain F, Complement Components Factor H Ccp19-20 (S1191l Mutant) And
C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1069 GKWGVPPPVDNGSTSSMP 1086
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|3R62|A Chain A, Structure Of Complement Regulator Factor H Mutant, T1184r.
pdb|3R62|B Chain B, Structure Of Complement Regulator Factor H Mutant, T1184r
Length = 129
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1069 GKWGVPPPVDNGSTSSMP 1086
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|2BZM|A Chain A, Solution Structure Of The Primary Host Recognition Region Of
Complement Factor H
pdb|3OXU|D Chain D, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|E Chain E, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|F Chain F, Complement Components Factor H Ccp19-20 And C3d In Complex
Length = 129
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1069 GKWGVPPPVDNGSTSSMP 1086
GK G PPP+DNG +S P
Sbjct: 5 GKCGPPPPIDNGDITSFP 22
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
II++ +D ++ Y + DEV + GH+K IT L +N L+S D ++ W
Sbjct: 312 IISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIXEW 362
>pdb|2G7I|A Chain A, Structure Of Human Complement Factor H Carboxyl Terminal
Domains 19- 20: A Basis For Atypical Hemolytic Uremic
Syndrome
Length = 125
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1069 GKWGVPPPVDNGSTSSMP 1086
GK G PPP+DNG +S P
Sbjct: 1 GKCGPPPPIDNGDITSFP 18
>pdb|3KZJ|A Chain A, Structure Of Complement Factor H Variant R1203a
Length = 133
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 6 DSTGKCGPPPPIDNGDITSFP 26
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 183 DSTGKCGPPPPIDNGDITSFP 203
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 858 DNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916
++ I++ G I ++VRV E + L GHS+ + GL ++ L S G D+ + VW
Sbjct: 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Query: 917 SS 918
S
Sbjct: 178 PS 179
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911
++ N +A+G + +Q+++V+ + + HS R+ L+++ + ++SSG+ S
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRS 128
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 1066 ESEGKWGVPPPVDNGSTSSMP 1086
+S GK G PPP+DNG +S P
Sbjct: 1086 DSTGKCGPPPPIDNGDITSFP 1106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,646,754
Number of Sequences: 62578
Number of extensions: 1364898
Number of successful extensions: 3644
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 2927
Number of HSP's gapped (non-prelim): 609
length of query: 1101
length of database: 14,973,337
effective HSP length: 109
effective length of query: 992
effective length of database: 8,152,335
effective search space: 8087116320
effective search space used: 8087116320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)