Query 001318
Match_columns 1101
No_of_seqs 893 out of 4758
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 21:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.5E-67 3.2E-72 523.4 35.8 479 5-878 17-514 (519)
2 KOG0319 WD40-repeat-containing 100.0 9.1E-57 2E-61 479.8 46.5 574 351-1068 25-622 (775)
3 KOG0275 Conserved WD40 repeat- 100.0 1.7E-58 3.6E-63 443.9 28.7 477 5-717 7-507 (508)
4 KOG0319 WD40-repeat-containing 100.0 1.2E-55 2.6E-60 471.2 43.1 546 344-1013 61-620 (775)
5 KOG0291 WD40-repeat-containing 100.0 3.9E-52 8.5E-57 444.0 62.6 572 339-1066 49-710 (893)
6 KOG0318 WD40 repeat stress pro 100.0 2.2E-50 4.8E-55 414.0 58.8 573 352-1065 25-602 (603)
7 KOG0271 Notchless-like WD40 re 100.0 2.5E-54 5.4E-59 425.2 26.3 376 328-917 98-479 (480)
8 KOG0318 WD40 repeat stress pro 100.0 4.3E-48 9.2E-53 397.2 57.8 538 340-1012 54-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 8E-49 1.7E-53 418.6 49.6 610 346-1066 22-665 (888)
10 KOG0291 WD40-repeat-containing 100.0 7.9E-47 1.7E-51 403.6 59.9 546 349-1074 18-623 (893)
11 KOG0271 Notchless-like WD40 re 100.0 6.6E-51 1.4E-55 401.1 24.4 364 402-1010 110-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 7.5E-48 1.6E-52 411.1 47.1 548 343-1016 63-668 (888)
13 KOG1408 WD40 repeat protein [F 100.0 1.3E-46 2.9E-51 397.6 41.7 637 349-1099 41-752 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 7E-41 1.5E-45 354.4 41.5 553 343-1014 76-715 (1080)
15 KOG1539 WD repeat protein [Gen 100.0 1.1E-37 2.4E-42 337.9 55.4 586 351-1066 39-649 (910)
16 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-41 1.7E-45 335.3 23.0 285 450-917 173-458 (459)
17 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-40 6.2E-45 331.3 24.2 284 342-766 172-458 (459)
18 KOG0286 G-protein beta subunit 100.0 6.9E-39 1.5E-43 306.0 32.1 290 341-766 51-343 (343)
19 KOG1063 RNA polymerase II elon 100.0 8.8E-37 1.9E-41 324.3 46.7 588 337-1065 46-763 (764)
20 KOG0276 Vesicle coat complex C 100.0 1.7E-36 3.7E-41 317.6 44.9 460 343-1004 11-483 (794)
21 KOG1539 WD repeat protein [Gen 100.0 3E-35 6.6E-40 319.1 50.9 547 343-1011 74-647 (910)
22 KOG0273 Beta-transducin family 100.0 1.5E-36 3.2E-41 308.6 38.0 354 334-919 167-523 (524)
23 KOG2106 Uncharacterized conser 100.0 1.1E-35 2.3E-40 304.1 44.5 531 301-1064 76-625 (626)
24 KOG0279 G protein beta subunit 100.0 6E-37 1.3E-41 291.3 31.6 257 341-643 11-269 (315)
25 KOG0286 G-protein beta subunit 100.0 3.7E-36 8.1E-41 287.4 32.7 287 444-917 47-343 (343)
26 KOG0279 G protein beta subunit 100.0 6.2E-36 1.3E-40 284.4 31.5 296 735-1066 12-314 (315)
27 KOG0276 Vesicle coat complex C 100.0 1.2E-34 2.6E-39 303.8 43.7 470 403-1065 9-490 (794)
28 KOG1063 RNA polymerase II elon 100.0 1.1E-34 2.3E-39 308.6 43.3 546 351-1065 20-699 (764)
29 KOG0296 Angio-associated migra 100.0 2.3E-35 5E-40 290.8 34.3 339 402-919 59-398 (399)
30 KOG0292 Vesicle coat complex C 100.0 4.1E-34 9E-39 310.8 46.5 492 344-1011 8-517 (1202)
31 KOG0295 WD40 repeat-containing 100.0 1.1E-35 2.3E-40 292.9 24.9 273 338-645 101-373 (406)
32 KOG0296 Angio-associated migra 100.0 6.3E-34 1.4E-38 280.7 34.5 333 337-877 56-398 (399)
33 KOG0315 G-protein beta subunit 100.0 7.9E-34 1.7E-38 265.0 31.7 295 467-898 11-309 (311)
34 KOG0263 Transcription initiati 100.0 3.3E-35 7.1E-40 319.4 25.5 275 332-637 364-651 (707)
35 KOG0265 U5 snRNP-specific prot 100.0 3.6E-34 7.8E-39 275.2 28.7 296 400-875 40-336 (338)
36 KOG0295 WD40 repeat-containing 100.0 7.3E-35 1.6E-39 287.0 24.5 301 402-918 103-405 (406)
37 KOG0315 G-protein beta subunit 100.0 8.4E-34 1.8E-38 264.8 29.5 281 511-937 11-301 (311)
38 KOG0292 Vesicle coat complex C 100.0 5.8E-32 1.2E-36 294.2 47.7 546 306-1016 18-598 (1202)
39 KOG0273 Beta-transducin family 100.0 5.2E-34 1.1E-38 290.1 29.7 255 344-643 234-489 (524)
40 KOG0285 Pleiotropic regulator 100.0 9.4E-34 2E-38 277.7 25.7 245 341-637 147-391 (460)
41 KOG0265 U5 snRNP-specific prot 100.0 4.1E-33 8.9E-38 267.9 27.0 254 337-637 39-298 (338)
42 KOG2106 Uncharacterized conser 100.0 1.9E-31 4.1E-36 273.2 40.4 436 334-918 142-625 (626)
43 KOG0263 Transcription initiati 100.0 6.5E-34 1.4E-38 309.3 23.3 274 737-1068 377-652 (707)
44 KOG0645 WD40 repeat protein [G 100.0 3.9E-32 8.4E-37 257.4 32.2 246 340-635 9-261 (312)
45 KOG2048 WD40 repeat protein [G 100.0 2E-29 4.3E-34 268.6 55.5 545 345-1064 25-600 (691)
46 KOG2048 WD40 repeat protein [G 100.0 7.8E-30 1.7E-34 271.7 52.0 504 407-1068 25-551 (691)
47 KOG0284 Polyadenylation factor 100.0 7.2E-34 1.6E-38 283.9 18.7 284 344-768 95-380 (464)
48 KOG0285 Pleiotropic regulator 100.0 3.3E-32 7.2E-37 266.9 25.3 293 402-834 146-439 (460)
49 KOG0645 WD40 repeat protein [G 100.0 3.1E-31 6.7E-36 251.3 30.3 293 735-1065 11-311 (312)
50 KOG0282 mRNA splicing factor [ 100.0 1.1E-32 2.3E-37 282.1 20.1 290 402-875 209-503 (503)
51 KOG0293 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 270.2 23.4 288 447-920 219-514 (519)
52 KOG0266 WD40 repeat-containing 100.0 3E-31 6.6E-36 301.6 32.8 289 737-1065 158-454 (456)
53 KOG0266 WD40 repeat-containing 100.0 3.9E-31 8.4E-36 300.8 32.9 257 344-647 158-420 (456)
54 KOG0284 Polyadenylation factor 100.0 2.7E-32 5.8E-37 272.7 19.6 285 737-1068 95-383 (464)
55 KOG0316 Conserved WD40 repeat- 100.0 2.8E-31 6E-36 245.8 24.5 246 340-637 12-259 (307)
56 KOG0281 Beta-TrCP (transducin 100.0 1.6E-32 3.4E-37 267.7 16.0 232 344-637 196-430 (499)
57 KOG1445 Tumor-specific antigen 100.0 9.4E-30 2E-34 266.7 37.0 623 335-1016 69-848 (1012)
58 KOG0282 mRNA splicing factor [ 100.0 1.1E-31 2.4E-36 274.6 18.8 264 335-645 203-471 (503)
59 KOG0316 Conserved WD40 repeat- 100.0 2.7E-30 5.8E-35 239.3 25.6 286 401-834 11-299 (307)
60 KOG0281 Beta-TrCP (transducin 100.0 7.9E-32 1.7E-36 262.8 15.9 272 451-922 196-480 (499)
61 PLN00181 protein SPA1-RELATED; 100.0 6.1E-29 1.3E-33 306.0 40.0 310 367-918 457-792 (793)
62 KOG0278 Serine/threonine kinas 100.0 1.1E-30 2.3E-35 244.0 17.4 288 402-922 9-300 (334)
63 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 2.9E-33 268.7 35.8 246 342-637 6-251 (289)
64 cd00200 WD40 WD40 domain, foun 100.0 1.5E-28 3.3E-33 268.3 36.1 285 447-917 4-289 (289)
65 KOG0643 Translation initiation 100.0 1.5E-29 3.4E-34 239.0 23.1 295 402-920 5-318 (327)
66 KOG0640 mRNA cleavage stimulat 100.0 5.5E-29 1.2E-33 239.6 26.8 270 339-637 106-385 (430)
67 PLN00181 protein SPA1-RELATED; 100.0 1.6E-28 3.6E-33 302.1 37.6 321 710-1064 457-792 (793)
68 KOG0275 Conserved WD40 repeat- 100.0 4.3E-30 9.3E-35 248.2 18.1 291 737-1063 212-507 (508)
69 KOG0641 WD40 repeat protein [G 100.0 1.6E-27 3.5E-32 219.0 31.1 276 337-637 24-305 (350)
70 KOG0278 Serine/threonine kinas 100.0 1.8E-29 3.9E-34 235.8 17.4 297 735-1080 11-314 (334)
71 KOG0313 Microtubule binding pr 100.0 5.1E-28 1.1E-32 240.2 25.5 306 403-919 101-418 (423)
72 KOG0310 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 245.7 26.3 286 737-1068 25-312 (487)
73 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.7E-32 222.9 26.2 277 447-911 15-294 (313)
74 KOG0313 Microtubule binding pr 100.0 1.9E-27 4.2E-32 236.1 25.9 258 335-644 95-385 (423)
75 KOG0288 WD40 repeat protein Ti 100.0 1.9E-28 4.1E-33 245.8 17.8 261 331-642 160-423 (459)
76 KOG0299 U3 snoRNP-associated p 100.0 3.6E-27 7.8E-32 240.3 26.0 268 341-641 138-416 (479)
77 KOG0643 Translation initiation 100.0 1E-26 2.3E-31 219.9 26.3 235 339-625 4-251 (327)
78 KOG1407 WD40 repeat protein [F 100.0 1E-26 2.2E-31 219.3 26.0 278 402-868 15-293 (313)
79 KOG0277 Peroxisomal targeting 100.0 2.7E-27 5.9E-32 222.3 21.8 287 349-718 12-308 (311)
80 KOG0283 WD40 repeat-containing 100.0 1.8E-27 3.9E-32 262.0 23.9 272 343-637 265-578 (712)
81 KOG1445 Tumor-specific antigen 100.0 1E-25 2.2E-30 236.7 35.6 510 488-1077 71-856 (1012)
82 KOG0640 mRNA cleavage stimulat 100.0 2.2E-27 4.7E-32 228.7 20.8 247 737-1011 171-425 (430)
83 KOG0973 Histone transcription 100.0 5E-27 1.1E-31 265.1 27.3 304 737-1068 12-358 (942)
84 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.8E-31 259.9 30.7 243 343-644 206-449 (537)
85 KOG0283 WD40 repeat-containing 100.0 6E-27 1.3E-31 257.9 26.0 273 736-1014 265-578 (712)
86 KOG0288 WD40 repeat protein Ti 100.0 1.1E-27 2.4E-32 240.4 16.5 286 402-874 170-458 (459)
87 KOG0277 Peroxisomal targeting 100.0 5E-27 1.1E-31 220.5 19.1 253 337-634 52-308 (311)
88 KOG0310 Conserved WD40 repeat- 100.0 2.1E-26 4.6E-31 236.7 25.4 247 343-637 24-270 (487)
89 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-25 7.2E-30 216.5 32.4 289 737-1068 13-306 (311)
90 KOG0973 Histone transcription 100.0 1.7E-26 3.6E-31 260.9 26.2 280 344-637 12-357 (942)
91 PTZ00421 coronin; Provisional 99.9 2E-25 4.4E-30 251.7 34.7 265 738-1021 20-299 (493)
92 KOG0274 Cdc4 and related F-box 99.9 8.8E-26 1.9E-30 254.2 31.4 287 405-889 206-494 (537)
93 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-25 7E-30 216.6 30.9 247 804-1069 13-266 (311)
94 KOG0308 Conserved WD40 repeat- 99.9 7.1E-27 1.5E-31 247.4 20.7 253 344-637 20-287 (735)
95 KOG0647 mRNA export protein (c 99.9 8.7E-26 1.9E-30 217.8 25.7 248 344-636 26-282 (347)
96 KOG0772 Uncharacterized conser 99.9 4.2E-26 9E-31 234.8 24.9 297 735-1065 164-487 (641)
97 KOG2096 WD40 repeat protein [G 99.9 3.2E-25 7E-30 214.8 28.0 305 603-1011 84-401 (420)
98 PTZ00421 coronin; Provisional 99.9 4.8E-25 1E-29 248.7 33.6 263 344-637 19-292 (493)
99 KOG0300 WD40 repeat-containing 99.9 1.4E-25 3E-30 216.7 23.6 248 341-637 144-430 (481)
100 KOG2096 WD40 repeat protein [G 99.9 8.7E-25 1.9E-29 211.8 27.2 314 401-875 80-400 (420)
101 KOG0308 Conserved WD40 repeat- 99.9 3.1E-26 6.6E-31 242.7 18.6 373 406-1021 20-402 (735)
102 KOG0305 Anaphase promoting com 99.9 3.7E-25 8E-30 238.3 27.1 273 350-767 182-460 (484)
103 KOG0299 U3 snoRNP-associated p 99.9 3.8E-25 8.2E-30 225.7 25.2 293 402-824 137-444 (479)
104 KOG0772 Uncharacterized conser 99.9 2.4E-25 5.2E-30 229.3 23.8 305 490-920 161-488 (641)
105 KOG0268 Sof1-like rRNA process 99.9 3.5E-26 7.5E-31 225.6 16.6 284 403-880 62-348 (433)
106 KOG0305 Anaphase promoting com 99.9 2.3E-25 5E-30 239.9 24.4 257 330-637 201-463 (484)
107 KOG0289 mRNA splicing factor [ 99.9 1.2E-24 2.7E-29 219.7 27.4 279 607-1011 221-505 (506)
108 KOG0301 Phospholipase A2-activ 99.9 3.8E-25 8.3E-30 236.4 25.0 238 341-635 10-249 (745)
109 KOG0294 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 210.5 26.9 241 802-1068 40-284 (362)
110 PTZ00420 coronin; Provisional 99.9 2.8E-24 6.2E-29 242.7 33.5 235 364-637 50-295 (568)
111 KOG0647 mRNA export protein (c 99.9 1.6E-24 3.4E-29 209.2 25.8 207 403-637 23-230 (347)
112 KOG0264 Nucleosome remodeling 99.9 2.4E-25 5.2E-30 227.7 20.9 270 336-636 115-405 (422)
113 KOG1963 WD40 repeat protein [G 99.9 9.6E-23 2.1E-27 225.4 39.8 518 411-1071 20-589 (792)
114 KOG0289 mRNA splicing factor [ 99.9 4.6E-24 1E-28 215.6 26.9 282 453-918 220-505 (506)
115 PTZ00420 coronin; Provisional 99.9 1.6E-23 3.4E-28 236.7 32.6 224 825-1068 53-296 (568)
116 KOG0639 Transducin-like enhanc 99.9 1.4E-23 3.1E-28 215.2 28.9 255 337-637 411-665 (705)
117 KOG0300 WD40 repeat-containing 99.9 2.3E-24 5.1E-29 208.3 21.8 329 575-1014 126-478 (481)
118 KOG0268 Sof1-like rRNA process 99.9 2.9E-25 6.4E-30 219.1 15.2 243 340-637 61-304 (433)
119 KOG0301 Phospholipase A2-activ 99.9 4.9E-24 1.1E-28 228.0 24.9 276 735-1066 11-289 (745)
120 KOG0641 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 184.8 32.5 247 736-1012 87-349 (350)
121 KOG0294 WD40 repeat-containing 99.9 8.3E-23 1.8E-27 198.5 28.8 187 422-637 4-199 (362)
122 KOG1332 Vesicle coat complex C 99.9 2.2E-24 4.7E-29 201.7 17.2 258 343-636 9-287 (299)
123 KOG1332 Vesicle coat complex C 99.9 4.6E-24 1E-28 199.5 18.6 222 402-635 6-241 (299)
124 KOG1274 WD40 repeat protein [G 99.9 2E-20 4.3E-25 207.2 48.4 254 342-636 10-263 (933)
125 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.9E-28 215.4 21.4 281 737-1064 418-703 (705)
126 KOG1963 WD40 repeat protein [G 99.9 4.1E-21 8.9E-26 212.6 41.6 517 345-974 16-589 (792)
127 KOG1036 Mitotic spindle checkp 99.9 2.1E-22 4.6E-27 195.7 27.1 242 344-637 12-264 (323)
128 KOG4283 Transcription-coupled 99.9 2.4E-22 5.3E-27 192.8 26.4 240 342-641 40-282 (397)
129 KOG0646 WD40 repeat protein [G 99.9 7.5E-23 1.6E-27 209.5 23.7 234 387-651 64-322 (476)
130 KOG1274 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 222.0 29.4 251 736-1013 11-263 (933)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-21 6.5E-26 212.3 37.2 205 810-1021 77-288 (300)
132 KOG1036 Mitotic spindle checkp 99.9 1.4E-21 3E-26 190.1 27.2 283 405-867 11-294 (323)
133 KOG0646 WD40 repeat protein [G 99.9 2.5E-22 5.4E-27 205.8 23.0 296 470-900 11-330 (476)
134 KOG1273 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 191.7 24.7 295 410-878 26-323 (405)
135 KOG0321 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 214.7 21.0 433 413-1013 55-532 (720)
136 KOG2055 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 199.5 26.5 249 737-1012 256-512 (514)
137 KOG4283 Transcription-coupled 99.9 1.3E-21 2.8E-26 187.9 24.0 246 735-1011 98-364 (397)
138 KOG1538 Uncharacterized conser 99.9 3.5E-21 7.6E-26 204.0 29.6 456 347-964 14-520 (1081)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.5E-25 205.6 37.1 294 419-899 1-300 (300)
140 KOG2055 WD40 repeat protein [G 99.9 2.4E-21 5.2E-26 197.9 24.8 285 562-968 214-512 (514)
141 KOG0650 WD40 repeat nucleolar 99.9 3.8E-21 8.3E-26 202.1 25.4 313 445-916 393-732 (733)
142 KOG0264 Nucleosome remodeling 99.9 1.5E-21 3.2E-26 200.1 21.7 210 403-636 120-348 (422)
143 KOG1538 Uncharacterized conser 99.9 1.3E-19 2.9E-24 192.1 36.6 174 409-617 14-188 (1081)
144 KOG2445 Nuclear pore complex c 99.9 3.2E-20 6.8E-25 180.0 27.2 268 449-920 10-319 (361)
145 KOG1273 WD40 repeat protein [G 99.9 2.8E-20 6E-25 180.7 26.2 274 335-637 14-324 (405)
146 KOG0321 WD40 repeat-containing 99.9 6.2E-21 1.4E-25 202.3 23.5 290 751-1068 65-394 (720)
147 KOG0267 Microtubule severing p 99.9 1.4E-22 3.1E-27 217.6 10.7 232 804-1057 27-260 (825)
148 KOG0267 Microtubule severing p 99.9 2.6E-22 5.6E-27 215.7 10.3 234 343-626 26-259 (825)
149 KOG0650 WD40 repeat nucleolar 99.9 3.1E-20 6.7E-25 195.4 25.1 323 554-1009 394-732 (733)
150 KOG4328 WD40 protein [Function 99.9 2.5E-20 5.4E-25 190.4 22.6 258 344-642 185-456 (498)
151 KOG0302 Ribosome Assembly prot 99.9 3E-20 6.4E-25 185.0 21.7 267 334-628 140-432 (440)
152 KOG1009 Chromatin assembly com 99.9 9.9E-20 2.1E-24 183.5 25.6 172 344-529 12-196 (434)
153 KOG0269 WD40 repeat-containing 99.9 1.1E-20 2.3E-25 205.1 20.1 284 700-1014 50-342 (839)
154 KOG2445 Nuclear pore complex c 99.9 2.1E-19 4.4E-24 174.5 26.5 259 343-635 11-318 (361)
155 KOG1034 Transcriptional repres 99.9 3E-20 6.6E-25 181.8 20.9 266 343-637 36-339 (385)
156 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 191.4 18.7 254 357-641 192-455 (463)
157 KOG1034 Transcriptional repres 99.9 5.3E-20 1.1E-24 180.1 20.8 301 736-1065 36-383 (385)
158 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-17 6.7E-22 191.3 46.8 371 340-920 60-443 (466)
159 KOG0269 WD40 repeat-containing 99.8 3.4E-20 7.5E-25 201.2 18.5 270 345-652 39-313 (839)
160 KOG4328 WD40 protein [Function 99.8 3.6E-19 7.9E-24 182.0 23.4 314 485-877 175-495 (498)
161 KOG0270 WD40 repeat-containing 99.8 4.7E-19 1E-23 180.7 23.8 196 418-637 191-406 (463)
162 KOG4378 Nuclear protein COP1 [ 99.8 3.8E-19 8.2E-24 182.8 22.7 210 750-994 91-305 (673)
163 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-16 3.8E-21 185.0 47.3 368 448-1013 61-443 (466)
164 KOG4378 Nuclear protein COP1 [ 99.8 7.6E-19 1.7E-23 180.6 21.4 292 704-1044 5-303 (673)
165 KOG1310 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 181.6 21.7 169 445-635 43-231 (758)
166 KOG0302 Ribosome Assembly prot 99.8 7.6E-19 1.6E-23 175.1 18.9 174 335-530 201-380 (440)
167 KOG2919 Guanine nucleotide-bin 99.8 1.4E-17 3.1E-22 162.6 25.2 227 748-1003 121-361 (406)
168 KOG1524 WD40 repeat-containing 99.8 6.4E-17 1.4E-21 168.2 31.2 505 341-1068 10-526 (737)
169 KOG0322 G-protein beta subunit 99.8 3.2E-18 7E-23 162.5 18.3 308 487-918 5-322 (323)
170 KOG0307 Vesicle coat complex C 99.8 6.9E-19 1.5E-23 200.5 15.4 258 341-637 60-329 (1049)
171 KOG1912 WD40 repeat protein [G 99.8 9.9E-17 2.1E-21 174.0 30.4 572 344-1066 14-657 (1062)
172 KOG4497 Uncharacterized conser 99.8 2E-17 4.3E-22 161.8 22.5 403 350-913 13-426 (447)
173 KOG2919 Guanine nucleotide-bin 99.8 2.2E-17 4.7E-22 161.4 22.1 273 455-910 52-361 (406)
174 KOG1009 Chromatin assembly com 99.8 7.5E-17 1.6E-21 162.9 25.1 302 738-1068 13-375 (434)
175 KOG0303 Actin-binding protein 99.8 3.4E-17 7.3E-22 164.4 20.6 218 401-644 75-303 (472)
176 KOG4497 Uncharacterized conser 99.8 9.4E-17 2E-21 157.2 22.1 344 566-1058 13-425 (447)
177 KOG0303 Actin-binding protein 99.8 5.5E-17 1.2E-21 162.9 21.0 243 335-616 71-320 (472)
178 PRK11028 6-phosphogluconolacto 99.8 9.9E-16 2.1E-20 169.5 32.1 279 704-1016 5-310 (330)
179 KOG1912 WD40 repeat protein [G 99.8 1.2E-15 2.6E-20 165.7 31.3 605 330-1017 39-746 (1062)
180 KOG4227 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 160.2 20.9 307 398-767 47-386 (609)
181 KOG0649 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 143.6 26.2 288 739-1062 11-313 (325)
182 KOG0644 Uncharacterized conser 99.7 3.7E-18 8E-23 186.3 11.5 285 402-922 185-471 (1113)
183 KOG0307 Vesicle coat complex C 99.7 1.2E-17 2.6E-22 190.6 15.9 278 708-1015 36-330 (1049)
184 KOG1517 Guanine nucleotide bin 99.7 1.8E-16 3.9E-21 177.8 24.4 306 451-879 1063-1383(1387)
185 KOG0642 Cell-cycle nuclear pro 99.7 2.8E-17 6.1E-22 173.0 15.9 229 402-637 289-563 (577)
186 KOG2110 Uncharacterized conser 99.7 1.4E-15 3E-20 152.2 26.7 241 805-1068 5-251 (391)
187 KOG4227 WD40 repeat protein [G 99.7 3.4E-16 7.4E-21 156.3 22.3 168 447-637 51-227 (609)
188 KOG1007 WD repeat protein TSSC 99.7 2.2E-16 4.8E-21 151.9 20.2 259 341-635 59-361 (370)
189 KOG1188 WD40 repeat protein [G 99.7 1.6E-16 3.5E-21 157.0 19.7 151 468-637 42-198 (376)
190 PRK11028 6-phosphogluconolacto 99.7 2.6E-15 5.6E-20 166.2 31.8 257 805-1077 34-316 (330)
191 KOG1334 WD40 repeat protein [G 99.7 4E-17 8.6E-22 168.4 15.4 321 447-879 137-468 (559)
192 KOG0644 Uncharacterized conser 99.7 6.7E-18 1.5E-22 184.3 9.8 245 336-639 181-430 (1113)
193 KOG0322 G-protein beta subunit 99.7 1.5E-16 3.3E-21 151.3 17.3 308 444-876 6-322 (323)
194 KOG1188 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 156.5 18.5 289 420-767 41-345 (376)
195 KOG1007 WD repeat protein TSSC 99.7 1.1E-15 2.4E-20 147.2 22.3 228 367-636 39-290 (370)
196 KOG0649 WD40 repeat protein [G 99.7 1.4E-15 3E-20 142.9 21.0 255 346-636 11-275 (325)
197 KOG1517 Guanine nucleotide bin 99.7 2.3E-15 4.9E-20 169.1 25.5 203 809-1015 1169-1384(1387)
198 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3.1E-20 170.0 23.8 263 337-637 234-518 (555)
199 KOG0642 Cell-cycle nuclear pro 99.7 3E-16 6.5E-21 165.4 16.8 276 447-890 289-574 (577)
200 KOG2110 Uncharacterized conser 99.7 3.1E-14 6.6E-19 142.8 28.7 255 804-1084 86-351 (391)
201 KOG1334 WD40 repeat protein [G 99.7 5.8E-16 1.2E-20 160.0 16.1 275 341-646 138-434 (559)
202 KOG0290 Conserved WD40 repeat- 99.7 4.6E-15 9.9E-20 143.2 20.0 253 341-631 92-361 (364)
203 KOG0290 Conserved WD40 repeat- 99.7 2.8E-14 6.1E-19 137.8 25.2 255 339-637 38-320 (364)
204 KOG0771 Prolactin regulatory e 99.7 1E-15 2.2E-20 156.4 15.5 199 809-1013 148-355 (398)
205 KOG1587 Cytoplasmic dynein int 99.7 2.6E-14 5.7E-19 160.0 26.6 285 429-920 222-517 (555)
206 KOG0771 Prolactin regulatory e 99.7 1.9E-15 4.1E-20 154.4 15.7 200 850-1067 148-356 (398)
207 KOG1524 WD40 repeat-containing 99.7 6.5E-15 1.4E-19 153.5 19.4 208 700-964 74-282 (737)
208 KOG0974 WD-repeat protein WDR6 99.6 2.7E-12 5.7E-17 146.0 41.2 151 351-530 139-290 (967)
209 KOG1523 Actin-related protein 99.6 3.2E-14 6.9E-19 139.7 20.9 254 345-626 10-269 (361)
210 KOG1240 Protein kinase contain 99.6 9.1E-14 2E-18 159.2 27.1 214 402-637 1043-1275(1431)
211 KOG1523 Actin-related protein 99.6 1.8E-14 3.8E-19 141.5 18.4 209 407-638 10-239 (361)
212 KOG1240 Protein kinase contain 99.6 1.3E-13 2.9E-18 157.9 27.5 268 338-637 1041-1336(1431)
213 PF02239 Cytochrom_D1: Cytochr 99.6 9.3E-13 2E-17 144.4 31.5 325 513-1021 9-356 (369)
214 KOG0974 WD-repeat protein WDR6 99.6 8.6E-12 1.9E-16 141.9 39.6 197 346-593 88-290 (967)
215 KOG2111 Uncharacterized conser 99.6 2.4E-13 5.2E-18 133.7 23.6 242 806-1068 6-259 (346)
216 KOG1310 WD40 repeat protein [G 99.6 9.1E-15 2E-19 152.9 14.5 238 341-599 46-311 (758)
217 COG4946 Uncharacterized protei 99.6 8.5E-11 1.8E-15 121.6 42.7 145 737-909 358-508 (668)
218 PF02239 Cytochrom_D1: Cytochr 99.6 9.3E-13 2E-17 144.4 30.2 323 466-925 6-353 (369)
219 PRK01742 tolB translocation pr 99.6 1.4E-13 3E-18 157.0 23.1 222 339-616 197-426 (429)
220 PRK01742 tolB translocation pr 99.6 3.6E-13 7.8E-18 153.6 26.2 225 367-649 183-416 (429)
221 KOG2139 WD40 repeat protein [G 99.6 2E-12 4.3E-17 129.1 25.4 291 701-1012 110-431 (445)
222 KOG2139 WD40 repeat protein [G 99.6 1.1E-12 2.5E-17 130.8 23.3 256 344-628 97-368 (445)
223 KOG1272 WD40-repeat-containing 99.5 7.4E-14 1.6E-18 143.6 12.1 281 739-1068 130-412 (545)
224 KOG2321 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 137.4 21.7 257 338-637 44-304 (703)
225 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-13 5.5E-18 142.3 15.5 156 345-505 219-383 (636)
226 KOG1272 WD40-repeat-containing 99.5 6.7E-14 1.4E-18 144.0 11.0 195 804-1009 208-406 (545)
227 KOG2041 WD40 repeat protein [G 99.5 6E-11 1.3E-15 128.3 33.5 480 406-1021 13-541 (1189)
228 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.3E-17 137.8 18.9 216 699-921 183-454 (636)
229 PF10282 Lactonase: Lactonase, 99.5 3.2E-10 7E-15 125.2 38.7 210 807-1019 88-331 (345)
230 KOG2041 WD40 repeat protein [G 99.5 4.8E-11 1E-15 129.1 29.7 547 344-1012 13-619 (1189)
231 PF04762 IKI3: IKI3 family; I 99.5 2.9E-08 6.3E-13 121.2 56.2 537 344-1016 74-688 (928)
232 PRK03629 tolB translocation pr 99.5 1.4E-11 3.1E-16 139.9 26.1 221 340-615 193-427 (429)
233 COG4946 Uncharacterized protei 99.4 2.9E-09 6.3E-14 110.5 38.7 171 816-1001 331-507 (668)
234 PF04762 IKI3: IKI3 family; I 99.4 6.8E-08 1.5E-12 118.0 57.7 471 405-1065 73-639 (928)
235 KOG2315 Predicted translation 99.4 2.2E-10 4.7E-15 121.9 30.9 112 804-921 269-392 (566)
236 KOG2321 WD40 repeat protein [G 99.4 1.3E-11 2.9E-16 130.6 21.5 277 691-1013 53-344 (703)
237 PRK03629 tolB translocation pr 99.4 1.1E-10 2.4E-15 132.6 30.9 213 369-635 180-406 (429)
238 KOG3881 Uncharacterized conser 99.4 1.8E-11 3.9E-16 124.1 21.0 95 804-900 246-342 (412)
239 COG2706 3-carboxymuconate cycl 99.4 7.6E-10 1.7E-14 112.4 32.6 283 710-1018 15-329 (346)
240 KOG1832 HIV-1 Vpr-binding prot 99.4 2.2E-13 4.7E-18 150.1 7.8 215 343-623 1099-1319(1516)
241 KOG1409 Uncharacterized conser 99.4 1.4E-11 3E-16 122.6 19.4 325 572-1013 35-395 (404)
242 KOG2111 Uncharacterized conser 99.4 2.6E-10 5.6E-15 112.7 27.9 238 347-637 7-258 (346)
243 PF10282 Lactonase: Lactonase, 99.4 4.3E-10 9.3E-15 124.2 33.7 251 805-1072 36-329 (345)
244 KOG2315 Predicted translation 99.4 7.6E-10 1.7E-14 117.9 33.4 198 804-1018 164-395 (566)
245 PRK02889 tolB translocation pr 99.4 4.3E-11 9.4E-16 136.3 26.2 204 826-1057 176-392 (427)
246 PRK04922 tolB translocation pr 99.4 3.5E-11 7.5E-16 137.7 24.8 224 337-615 195-432 (433)
247 PRK05137 tolB translocation pr 99.4 1.3E-10 2.8E-15 133.3 29.1 216 368-637 182-414 (435)
248 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.3E-14 116.9 33.5 205 809-1021 108-339 (352)
249 PRK02889 tolB translocation pr 99.4 4.6E-11 9.9E-16 136.1 25.0 234 328-615 178-424 (427)
250 COG5354 Uncharacterized protei 99.4 5E-10 1.1E-14 117.6 29.9 362 403-911 28-421 (561)
251 PF08662 eIF2A: Eukaryotic tra 99.4 3.7E-11 8E-16 119.4 20.7 155 850-1021 9-187 (194)
252 KOG1354 Serine/threonine prote 99.4 1E-10 2.2E-15 116.3 23.1 349 452-965 25-431 (433)
253 PRK05137 tolB translocation pr 99.4 1.3E-10 2.8E-15 133.3 25.7 232 328-615 184-432 (435)
254 PRK04922 tolB translocation pr 99.4 1.2E-10 2.6E-15 133.2 25.0 215 368-636 184-412 (433)
255 COG5354 Uncharacterized protei 99.3 2.8E-09 6.1E-14 112.1 31.3 323 567-1016 38-399 (561)
256 PF08662 eIF2A: Eukaryotic tra 99.3 9.1E-11 2E-15 116.6 19.4 112 804-921 58-181 (194)
257 KOG3881 Uncharacterized conser 99.3 2.5E-10 5.5E-15 115.9 21.4 255 343-637 53-322 (412)
258 TIGR02800 propeller_TolB tol-p 99.3 7.9E-10 1.7E-14 127.3 28.8 205 826-1058 170-387 (417)
259 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.4E-09 9.6E-14 112.2 31.9 237 813-1068 53-333 (352)
260 COG2706 3-carboxymuconate cycl 99.3 7.3E-09 1.6E-13 105.4 31.1 257 804-1076 38-332 (346)
261 KOG1409 Uncharacterized conser 99.3 3.1E-10 6.8E-15 113.1 19.2 216 402-649 19-241 (404)
262 PRK01029 tolB translocation pr 99.3 1.2E-09 2.5E-14 123.7 25.4 227 341-617 180-426 (428)
263 PRK00178 tolB translocation pr 99.2 1.7E-09 3.7E-14 124.4 26.5 226 336-615 189-427 (430)
264 PRK04792 tolB translocation pr 99.2 1.5E-09 3.2E-14 124.1 25.0 222 339-615 211-446 (448)
265 KOG1354 Serine/threonine prote 99.2 8.8E-10 1.9E-14 109.8 19.1 277 343-638 23-362 (433)
266 TIGR02800 propeller_TolB tol-p 99.2 4.1E-09 8.8E-14 121.4 28.2 191 403-627 185-386 (417)
267 KOG2314 Translation initiation 99.2 6.6E-09 1.4E-13 110.1 26.3 294 739-1067 250-575 (698)
268 KOG2314 Translation initiation 99.2 9.8E-09 2.1E-13 108.9 27.2 320 565-1012 214-573 (698)
269 KOG4547 WD40 repeat-containing 99.2 3.3E-09 7.2E-14 114.2 23.4 188 815-1013 3-221 (541)
270 PRK04792 tolB translocation pr 99.2 9.8E-09 2.1E-13 117.3 28.1 210 827-1064 199-424 (448)
271 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.2E-14 115.9 19.7 146 749-920 69-221 (541)
272 PRK00178 tolB translocation pr 99.1 1.6E-08 3.6E-13 116.3 28.6 199 403-635 194-406 (430)
273 TIGR03300 assembly_YfgL outer 99.1 1.8E-08 3.8E-13 114.0 28.1 304 468-916 67-376 (377)
274 KOG0280 Uncharacterized conser 99.1 5.8E-09 1.3E-13 102.1 20.3 200 808-1015 124-336 (339)
275 TIGR03300 assembly_YfgL outer 99.1 7.4E-08 1.6E-12 108.9 31.1 227 361-637 68-299 (377)
276 PRK01029 tolB translocation pr 99.1 3.2E-08 6.8E-13 112.1 27.2 204 403-637 180-405 (428)
277 PLN02919 haloacid dehalogenase 99.1 6.3E-08 1.4E-12 120.8 30.9 257 808-1068 570-891 (1057)
278 PLN02919 haloacid dehalogenase 99.1 5.6E-08 1.2E-12 121.3 30.0 260 742-1016 571-892 (1057)
279 KOG1064 RAVE (regulator of V-A 99.0 1.2E-09 2.5E-14 130.6 12.9 199 343-601 2206-2408(2439)
280 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.5E-14 115.1 10.4 210 402-637 730-950 (1034)
281 KOG0280 Uncharacterized conser 99.0 3.8E-08 8.3E-13 96.5 19.8 190 345-551 69-264 (339)
282 KOG0309 Conserved WD40 repeat- 98.9 9.4E-09 2E-13 112.4 13.5 303 342-720 21-340 (1081)
283 KOG4190 Uncharacterized conser 98.9 4.4E-09 9.6E-14 110.7 10.3 210 803-1021 733-957 (1034)
284 KOG3617 WD40 and TPR repeat-co 98.9 2.9E-07 6.3E-12 102.4 23.5 109 350-485 20-132 (1416)
285 KOG3914 WD repeat protein WDR4 98.9 1.4E-08 3.1E-13 104.2 12.4 165 348-538 65-233 (390)
286 KOG1064 RAVE (regulator of V-A 98.9 1.1E-08 2.3E-13 122.6 12.4 200 403-644 2204-2406(2439)
287 PF15492 Nbas_N: Neuroblastoma 98.8 1.1E-06 2.3E-11 87.2 23.0 208 810-1021 2-268 (282)
288 PRK04043 tolB translocation pr 98.8 1.8E-06 4E-11 97.0 27.6 210 826-1066 169-401 (419)
289 COG5170 CDC55 Serine/threonine 98.8 1E-07 2.2E-12 93.9 14.8 224 405-648 24-322 (460)
290 KOG0309 Conserved WD40 repeat- 98.8 1.7E-08 3.8E-13 110.3 10.5 257 347-636 69-340 (1081)
291 PF15492 Nbas_N: Neuroblastoma 98.8 1.9E-06 4.1E-11 85.5 23.6 216 852-1074 3-270 (282)
292 PRK04043 tolB translocation pr 98.8 1.5E-06 3.2E-11 97.8 26.1 156 347-531 189-360 (419)
293 PRK11138 outer membrane biogen 98.8 4.6E-06 9.9E-11 94.6 29.8 309 468-918 71-393 (394)
294 KOG4532 WD40-like repeat conta 98.8 1.2E-06 2.6E-11 84.9 20.7 242 817-1067 84-333 (344)
295 PF13360 PQQ_2: PQQ-like domai 98.8 1.6E-06 3.5E-11 91.1 24.0 224 825-1072 2-237 (238)
296 PF07433 DUF1513: Protein of u 98.8 1.4E-05 3E-10 82.3 28.9 208 807-1021 6-256 (305)
297 PRK11138 outer membrane biogen 98.8 7.5E-06 1.6E-10 92.8 30.4 211 825-1064 169-393 (394)
298 KOG3617 WD40 and TPR repeat-co 98.7 7.3E-07 1.6E-11 99.3 19.6 150 347-527 61-219 (1416)
299 COG5170 CDC55 Serine/threonine 98.7 2.2E-07 4.9E-12 91.5 13.9 258 804-1065 25-367 (460)
300 KOG3914 WD repeat protein WDR4 98.7 1.6E-07 3.5E-12 96.7 13.3 158 892-1068 65-226 (390)
301 PF07433 DUF1513: Protein of u 98.7 4.6E-06 9.9E-11 85.8 23.8 185 810-1005 55-278 (305)
302 KOG4532 WD40-like repeat conta 98.7 2.6E-06 5.7E-11 82.6 19.5 192 821-1017 132-336 (344)
303 PF08450 SGL: SMP-30/Gluconola 98.7 2.1E-05 4.6E-10 82.8 27.9 219 809-1053 3-243 (246)
304 KOG4714 Nucleoporin [Nuclear s 98.6 3.9E-07 8.5E-12 87.9 11.9 210 348-592 39-255 (319)
305 KOG4714 Nucleoporin [Nuclear s 98.6 9.6E-07 2.1E-11 85.3 14.3 150 747-920 98-255 (319)
306 KOG2695 WD40 repeat protein [G 98.6 1.8E-07 3.8E-12 93.9 9.4 155 362-540 228-388 (425)
307 PRK02888 nitrous-oxide reducta 98.6 1E-05 2.3E-10 91.0 23.8 185 813-1013 200-405 (635)
308 PF08450 SGL: SMP-30/Gluconola 98.6 0.0002 4.3E-09 75.4 31.9 226 349-624 3-244 (246)
309 KOG0882 Cyclophilin-related pe 98.5 5.4E-06 1.2E-10 86.4 18.7 213 405-645 7-240 (558)
310 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.6E-12 105.9 6.7 199 836-1068 1091-1294(1516)
311 PF13360 PQQ_2: PQQ-like domai 98.5 2.2E-05 4.7E-10 82.5 23.7 228 367-639 2-234 (238)
312 PF10607 CLTH: CTLH/CRA C-term 98.5 2.6E-07 5.5E-12 87.8 8.0 133 25-169 5-141 (145)
313 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00064 1.4E-08 66.3 30.5 147 458-632 16-162 (354)
314 PF06433 Me-amine-dh_H: Methyl 98.5 9.9E-05 2.1E-09 77.0 26.7 205 810-1021 99-329 (342)
315 KOG2695 WD40 repeat protein [G 98.5 5.4E-07 1.2E-11 90.5 9.8 154 819-1022 227-386 (425)
316 KOG1897 Damage-specific DNA bi 98.5 0.0077 1.7E-07 70.3 53.4 594 339-1066 300-943 (1096)
317 PF00400 WD40: WD domain, G-be 98.4 5.5E-07 1.2E-11 63.0 6.1 39 879-917 1-39 (39)
318 KOG1920 IkappaB kinase complex 98.4 4E-05 8.6E-10 90.3 24.3 277 738-1064 68-364 (1265)
319 PRK02888 nitrous-oxide reducta 98.4 2.3E-05 4.9E-10 88.3 20.0 222 815-1066 139-405 (635)
320 KOG0882 Cyclophilin-related pe 98.4 3.2E-06 6.9E-11 88.1 12.0 213 845-1068 8-234 (558)
321 KOG1920 IkappaB kinase complex 98.4 0.0012 2.6E-08 78.4 33.5 274 562-917 69-363 (1265)
322 KOG1275 PAB-dependent poly(A) 98.4 6.1E-06 1.3E-10 93.6 14.5 181 816-1010 146-340 (1118)
323 KOG2066 Vacuolar assembly/sort 98.3 1.1E-05 2.4E-10 90.6 15.8 191 847-1067 40-235 (846)
324 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0019 4.2E-08 63.1 28.4 145 351-524 16-161 (354)
325 KOG1645 RING-finger-containing 98.3 5.4E-05 1.2E-09 78.2 18.6 222 402-635 188-461 (463)
326 smart00668 CTLH C-terminal to 98.2 9E-07 2E-11 68.4 3.5 53 24-77 4-56 (58)
327 KOG2114 Vacuolar assembly/sort 98.2 7.2E-05 1.6E-09 84.9 19.4 203 853-1069 30-247 (933)
328 PF00400 WD40: WD domain, G-be 98.2 3.6E-06 7.8E-11 58.8 6.0 39 836-875 1-39 (39)
329 cd00216 PQQ_DH Dehydrogenases 98.2 0.0012 2.5E-08 76.9 28.6 211 419-638 61-322 (488)
330 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0076 1.6E-07 67.1 33.6 104 354-482 1-129 (353)
331 cd00216 PQQ_DH Dehydrogenases 98.1 0.002 4.4E-08 74.9 29.8 155 852-1021 222-433 (488)
332 KOG3621 WD40 repeat-containing 98.1 0.00051 1.1E-08 76.7 22.0 156 739-919 77-244 (726)
333 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00053 1.1E-08 76.3 22.8 289 582-956 22-344 (353)
334 PF14583 Pectate_lyase22: Olig 98.1 0.0027 6E-08 67.9 26.1 286 744-1065 41-381 (386)
335 PF08596 Lgl_C: Lethal giant l 98.1 0.00073 1.6E-08 74.7 22.8 281 740-1064 3-334 (395)
336 PF06433 Me-amine-dh_H: Methyl 98.1 0.0013 2.8E-08 68.9 23.1 243 808-1068 38-323 (342)
337 KOG3621 WD40 repeat-containing 98.0 0.00047 1E-08 77.0 20.7 121 344-485 32-155 (726)
338 KOG1275 PAB-dependent poly(A) 98.0 0.0001 2.2E-09 84.1 15.4 184 418-634 146-341 (1118)
339 PF06977 SdiA-regulated: SdiA- 98.0 0.0018 3.9E-08 66.3 22.9 217 840-1062 15-247 (248)
340 KOG1645 RING-finger-containing 98.0 0.00022 4.8E-09 73.8 16.1 230 828-1068 175-422 (463)
341 KOG2114 Vacuolar assembly/sort 98.0 0.00033 7.1E-09 79.8 18.8 203 811-1021 29-252 (933)
342 KOG2659 LisH motif-containing 98.0 4.8E-05 1E-09 73.9 10.5 152 4-169 25-204 (228)
343 PF14583 Pectate_lyase22: Olig 98.0 0.003 6.5E-08 67.6 24.4 175 826-1011 168-380 (386)
344 PF04053 Coatomer_WDAD: Coatom 98.0 0.0011 2.4E-08 74.4 22.3 224 738-1016 32-266 (443)
345 KOG2066 Vacuolar assembly/sort 97.9 0.00034 7.3E-09 79.2 17.5 185 805-1012 39-233 (846)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.042 9.2E-07 64.1 34.8 61 826-888 441-501 (527)
347 PF08596 Lgl_C: Lethal giant l 97.9 0.0034 7.4E-08 69.5 24.5 269 347-635 3-335 (395)
348 PF11768 DUF3312: Protein of u 97.9 0.00024 5.1E-09 78.3 14.1 80 338-439 252-331 (545)
349 PF04841 Vps16_N: Vps16, N-ter 97.8 0.014 3.1E-07 65.7 28.0 198 810-1021 33-255 (410)
350 KOG1897 Damage-specific DNA bi 97.8 0.15 3.2E-06 60.1 50.5 470 453-1010 488-1002(1096)
351 COG3391 Uncharacterized conser 97.8 0.0067 1.5E-07 67.9 25.2 206 807-1021 75-292 (381)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.031 6.7E-07 65.2 31.4 149 870-1021 272-499 (527)
353 PF11768 DUF3312: Protein of u 97.8 0.00033 7.2E-09 77.2 13.6 129 337-488 197-333 (545)
354 PF04053 Coatomer_WDAD: Coatom 97.8 0.0072 1.6E-07 67.9 24.4 218 805-1068 32-265 (443)
355 KOG1008 Uncharacterized conser 97.7 1.8E-05 3.9E-10 86.5 3.5 159 344-526 55-223 (783)
356 COG0823 TolB Periplasmic compo 97.7 0.00068 1.5E-08 75.8 15.4 185 805-1003 192-390 (425)
357 PF06977 SdiA-regulated: SdiA- 97.6 0.031 6.8E-07 57.3 24.6 162 344-527 20-200 (248)
358 PF04841 Vps16_N: Vps16, N-ter 97.5 0.17 3.7E-06 57.2 31.6 136 812-976 185-322 (410)
359 COG3391 Uncharacterized conser 97.5 0.08 1.7E-06 59.4 28.9 240 807-1068 32-286 (381)
360 PRK13616 lipoprotein LpqB; Pro 97.5 0.015 3.2E-07 68.3 23.7 203 847-1078 350-581 (591)
361 COG0823 TolB Periplasmic compo 97.5 0.0077 1.7E-07 67.5 20.4 178 826-1018 173-364 (425)
362 PF02897 Peptidase_S9_N: Proly 97.4 0.1 2.3E-06 59.8 29.2 247 348-637 126-406 (414)
363 PF00780 CNH: CNH domain; Int 97.4 0.071 1.5E-06 57.2 25.4 233 748-1021 5-264 (275)
364 KOG1008 Uncharacterized conser 97.4 9.8E-05 2.1E-09 81.0 2.7 198 806-1012 57-275 (783)
365 PRK13616 lipoprotein LpqB; Pro 97.3 0.0099 2.2E-07 69.7 19.2 188 806-1007 350-563 (591)
366 COG3386 Gluconolactonase [Carb 97.3 0.05 1.1E-06 58.0 22.7 221 811-1055 30-275 (307)
367 COG3490 Uncharacterized protei 97.3 0.046 9.9E-07 54.8 19.8 234 809-1062 71-345 (366)
368 COG3490 Uncharacterized protei 97.3 0.042 9E-07 55.1 19.4 238 576-875 83-346 (366)
369 PF02897 Peptidase_S9_N: Proly 97.3 0.099 2.2E-06 60.0 26.5 239 808-1068 126-407 (414)
370 PF08553 VID27: VID27 cytoplas 97.3 0.0085 1.9E-07 71.0 17.2 151 464-635 492-647 (794)
371 PF00780 CNH: CNH domain; Int 97.2 0.16 3.5E-06 54.4 25.3 223 814-1068 4-258 (275)
372 PF08553 VID27: VID27 cytoplas 97.2 0.023 4.9E-07 67.5 19.4 148 858-1011 492-646 (794)
373 KOG0396 Uncharacterized conser 97.1 0.0024 5.2E-08 66.0 9.5 143 15-171 138-292 (389)
374 KOG4640 Anaphase-promoting com 97.1 0.0022 4.8E-08 70.9 9.6 95 345-462 20-115 (665)
375 KOG2395 Protein involved in va 97.1 0.045 9.8E-07 59.6 18.7 150 465-635 345-500 (644)
376 PF03178 CPSF_A: CPSF A subuni 97.1 0.077 1.7E-06 58.3 21.7 175 826-1012 2-202 (321)
377 TIGR03074 PQQ_membr_DH membran 97.0 1.3 2.9E-05 53.7 37.7 215 419-639 194-481 (764)
378 PF03178 CPSF_A: CPSF A subuni 97.0 0.14 3E-06 56.3 23.4 220 368-634 2-264 (321)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.31 6.8E-06 54.0 24.6 93 412-505 6-117 (415)
380 COG3386 Gluconolactonase [Carb 96.9 0.3 6.6E-06 52.2 23.9 231 351-625 30-275 (307)
381 smart00320 WD40 WD40 repeats. 96.9 0.0024 5.1E-08 43.8 5.2 39 879-917 2-40 (40)
382 PF05096 Glu_cyclase_2: Glutam 96.8 0.51 1.1E-05 48.3 22.9 187 805-1000 44-249 (264)
383 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.6 1.3E-05 51.8 24.8 88 810-898 6-117 (415)
384 PF14870 PSII_BNR: Photosynthe 96.6 0.45 9.8E-06 50.5 22.1 157 843-1009 141-301 (302)
385 PF07995 GSDH: Glucose / Sorbo 96.6 0.96 2.1E-05 49.6 25.7 241 807-1060 3-330 (331)
386 TIGR03074 PQQ_membr_DH membran 96.6 2.7 5.9E-05 51.2 39.8 85 960-1053 641-743 (764)
387 KOG2079 Vacuolar assembly/sort 96.6 0.047 1E-06 64.7 15.6 101 360-483 101-202 (1206)
388 KOG4640 Anaphase-promoting com 96.6 0.0085 1.8E-07 66.5 9.1 92 805-898 20-114 (665)
389 PHA02713 hypothetical protein; 96.5 0.23 5E-06 58.8 21.2 224 827-1078 273-544 (557)
390 COG3204 Uncharacterized protei 96.5 0.54 1.2E-05 48.0 20.1 199 737-964 84-308 (316)
391 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.17 3.6E-06 43.8 14.0 66 455-527 2-70 (111)
392 KOG2079 Vacuolar assembly/sort 96.4 0.042 9.1E-07 65.1 13.8 105 418-528 98-203 (1206)
393 PF15390 DUF4613: Domain of un 96.4 0.074 1.6E-06 59.1 14.8 160 846-1014 19-188 (671)
394 PF07995 GSDH: Glucose / Sorbo 96.4 1.4 3.1E-05 48.2 25.3 111 347-473 3-133 (331)
395 KOG4441 Proteins containing BT 96.4 0.44 9.5E-06 56.2 22.5 235 815-1076 283-555 (571)
396 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.22 4.7E-06 43.2 14.5 102 410-523 2-109 (111)
397 KOG2395 Protein involved in va 96.4 0.056 1.2E-06 59.0 13.4 145 860-1011 347-499 (644)
398 PF10647 Gmad1: Lipoprotein Lp 96.4 0.51 1.1E-05 49.4 20.6 145 806-957 24-183 (253)
399 smart00320 WD40 WD40 repeats. 96.3 0.0079 1.7E-07 41.0 4.9 38 837-875 3-40 (40)
400 PRK10115 protease 2; Provision 96.3 2.8 6E-05 51.1 29.1 196 806-1012 127-344 (686)
401 PF05694 SBP56: 56kDa selenium 96.2 0.57 1.2E-05 51.1 19.9 238 749-1001 86-392 (461)
402 PF14727 PHTB1_N: PTHB1 N-term 96.2 1.6 3.6E-05 48.6 24.0 198 701-920 145-361 (418)
403 KOG2444 WD40 repeat protein [G 96.1 0.018 3.9E-07 56.0 7.1 104 817-920 70-178 (238)
404 KOG1898 Splicing factor 3b, su 96.0 5.2 0.00011 48.3 37.9 111 945-1068 939-1051(1205)
405 PF10647 Gmad1: Lipoprotein Lp 96.0 0.4 8.6E-06 50.2 17.3 149 848-1005 25-188 (253)
406 PHA02713 hypothetical protein; 96.0 0.32 6.9E-06 57.6 18.5 189 815-1017 302-538 (557)
407 PF15390 DUF4613: Domain of un 95.8 4.4 9.5E-05 45.8 26.3 156 453-634 20-185 (671)
408 PF14727 PHTB1_N: PTHB1 N-term 95.8 4.3 9.3E-05 45.4 32.9 280 750-1068 37-363 (418)
409 COG3204 Uncharacterized protei 95.8 0.89 1.9E-05 46.6 17.7 170 885-1067 81-265 (316)
410 KOG4441 Proteins containing BT 95.8 0.55 1.2E-05 55.4 19.2 195 809-1017 326-551 (571)
411 PF12894 Apc4_WD40: Anaphase-p 95.7 0.033 7.2E-07 39.9 5.6 31 407-437 11-41 (47)
412 KOG4499 Ca2+-binding protein R 95.6 0.63 1.4E-05 45.6 15.1 141 847-992 109-263 (310)
413 PRK10115 protease 2; Provision 95.5 8.6 0.00019 46.9 33.6 246 739-1015 127-397 (686)
414 PF10168 Nup88: Nuclear pore c 95.5 3.6 7.9E-05 49.6 24.6 94 804-920 83-180 (717)
415 PF05694 SBP56: 56kDa selenium 95.4 5.5 0.00012 43.8 26.0 131 826-957 222-391 (461)
416 PF12894 Apc4_WD40: Anaphase-p 95.2 0.061 1.3E-06 38.6 5.3 34 982-1016 11-44 (47)
417 PF14870 PSII_BNR: Photosynthe 95.1 5.6 0.00012 42.4 30.5 231 807-1062 63-301 (302)
418 KOG4499 Ca2+-binding protein R 95.0 3.1 6.6E-05 41.0 17.7 47 567-615 217-263 (310)
419 TIGR02604 Piru_Ver_Nterm putat 95.0 6.5 0.00014 44.0 23.8 139 806-956 14-200 (367)
420 COG3823 Glutamine cyclotransfe 94.9 1.2 2.6E-05 43.0 14.3 178 816-1000 55-247 (262)
421 KOG2444 WD40 repeat protein [G 94.8 0.082 1.8E-06 51.6 6.9 101 361-484 73-177 (238)
422 PHA03098 kelch-like protein; P 94.6 1.4 3.1E-05 52.4 18.4 189 815-1017 293-516 (534)
423 PRK13684 Ycf48-like protein; P 94.5 9.1 0.0002 42.0 29.1 156 846-1011 172-330 (334)
424 PHA02790 Kelch-like protein; P 94.4 2 4.3E-05 50.0 18.5 185 815-1016 270-474 (480)
425 PHA03098 kelch-like protein; P 94.3 2.6 5.7E-05 50.1 19.8 188 858-1068 294-514 (534)
426 COG4257 Vgb Streptogramin lyas 94.2 4.6 0.0001 40.9 17.3 192 849-1068 64-265 (353)
427 TIGR03118 PEPCTERM_chp_1 conse 94.2 8.2 0.00018 40.2 22.0 228 409-645 24-288 (336)
428 TIGR03118 PEPCTERM_chp_1 conse 94.1 8.4 0.00018 40.1 20.9 208 808-1021 25-288 (336)
429 PF05096 Glu_cyclase_2: Glutam 94.0 8.6 0.00019 39.6 23.3 191 407-624 44-249 (264)
430 PRK13684 Ycf48-like protein; P 93.8 13 0.00027 41.0 30.7 156 889-1064 172-330 (334)
431 PF12234 Rav1p_C: RAVE protein 93.8 1.2 2.6E-05 52.0 14.7 122 842-967 25-155 (631)
432 PF12234 Rav1p_C: RAVE protein 93.8 2.3 5.1E-05 49.7 16.8 125 453-590 30-155 (631)
433 KOG1916 Nuclear protein, conta 93.5 0.069 1.5E-06 61.9 4.0 145 826-973 153-328 (1283)
434 KOG2247 WD40 repeat-containing 93.4 0.012 2.7E-07 63.2 -1.9 240 742-1019 38-287 (615)
435 KOG2280 Vacuolar assembly/sort 93.3 4.3 9.3E-05 47.2 17.4 148 868-1022 63-256 (829)
436 PF03022 MRJP: Major royal jel 93.1 12 0.00027 39.9 20.0 190 808-1001 3-254 (287)
437 KOG3630 Nuclear pore complex, 93.0 1.1 2.3E-05 54.2 12.5 146 805-956 100-260 (1405)
438 PF10168 Nup88: Nuclear pore c 92.9 13 0.00029 44.9 22.0 66 367-433 41-110 (717)
439 COG5167 VID27 Protein involved 92.8 4.4 9.6E-05 44.6 15.7 153 460-635 474-632 (776)
440 PF13449 Phytase-like: Esteras 92.7 18 0.00039 39.6 22.5 165 846-1012 19-249 (326)
441 KOG1898 Splicing factor 3b, su 92.7 31 0.00067 42.2 31.0 105 811-919 939-1048(1205)
442 PLN00033 photosystem II stabil 92.5 21 0.00046 40.0 28.0 152 849-1009 241-396 (398)
443 TIGR02604 Piru_Ver_Nterm putat 92.5 4 8.8E-05 45.6 16.3 149 891-1057 15-205 (367)
444 COG5276 Uncharacterized conser 92.5 15 0.00032 38.0 19.5 187 817-1013 96-286 (370)
445 PHA02790 Kelch-like protein; P 92.3 8.7 0.00019 44.7 19.2 185 858-1068 271-473 (480)
446 COG4257 Vgb Streptogramin lyas 92.2 15 0.00032 37.5 21.8 243 804-1076 60-317 (353)
447 COG3823 Glutamine cyclotransfe 92.2 3.4 7.3E-05 40.0 12.4 183 858-1054 55-248 (262)
448 KOG3616 Selective LIM binding 91.9 1.9 4.2E-05 49.2 12.2 78 406-492 13-90 (1636)
449 cd08044 TAF5_NTD2 TAF5_NTD2 is 91.7 0.32 7E-06 44.8 5.3 78 59-136 29-113 (133)
450 KOG1916 Nuclear protein, conta 91.5 0.29 6.4E-06 57.0 5.6 164 343-533 130-328 (1283)
451 PLN00033 photosystem II stabil 91.4 28 0.00061 39.0 27.1 151 892-1062 241-396 (398)
452 KOG2817 Predicted E3 ubiquitin 91.4 0.79 1.7E-05 48.8 8.3 88 15-104 139-239 (394)
453 KOG2280 Vacuolar assembly/sort 91.4 19 0.00041 42.2 19.4 172 807-991 85-268 (829)
454 COG1520 FOG: WD40-like repeat 91.2 26 0.00056 39.3 21.1 199 813-1021 65-277 (370)
455 PF14761 HPS3_N: Hermansky-Pud 91.2 9.9 0.00021 37.6 14.9 112 807-922 19-166 (215)
456 PF10313 DUF2415: Uncharacteri 90.8 0.69 1.5E-05 32.1 4.7 32 346-377 1-34 (43)
457 PF10214 Rrn6: RNA polymerase 90.2 58 0.0013 40.5 27.2 174 804-1014 78-278 (765)
458 PF07676 PD40: WD40-like Beta 90.1 1 2.2E-05 30.9 5.4 33 341-373 4-38 (39)
459 KOG3630 Nuclear pore complex, 90.0 5 0.00011 48.9 13.8 100 807-908 157-262 (1405)
460 PF04494 TFIID_90kDa: WD40 ass 90.0 0.4 8.7E-06 44.8 4.3 78 59-136 40-124 (142)
461 PF10313 DUF2415: Uncharacteri 89.9 1.3 2.8E-05 30.9 5.4 32 408-439 1-35 (43)
462 COG1520 FOG: WD40-like repeat 89.8 17 0.00036 40.8 18.0 205 858-1076 68-279 (370)
463 PF08728 CRT10: CRT10; InterP 89.5 16 0.00034 43.5 17.3 116 409-527 102-245 (717)
464 PF08728 CRT10: CRT10; InterP 89.3 9.5 0.00021 45.3 15.4 132 499-634 103-245 (717)
465 PF13449 Phytase-like: Esteras 89.1 25 0.00054 38.5 18.1 173 737-919 18-249 (326)
466 KOG2377 Uncharacterized conser 88.9 13 0.00028 40.6 14.6 143 849-1000 25-171 (657)
467 PF02333 Phytase: Phytase; In 88.7 43 0.00092 36.9 21.0 196 858-1068 67-293 (381)
468 COG4590 ABC-type uncharacteriz 88.6 4.3 9.3E-05 44.0 10.9 170 838-1016 212-390 (733)
469 PF05935 Arylsulfotrans: Aryls 87.9 22 0.00048 41.2 17.5 146 867-1022 126-311 (477)
470 COG5290 IkappaB kinase complex 87.7 16 0.00034 42.8 15.1 211 846-1082 112-383 (1243)
471 COG4590 ABC-type uncharacteriz 87.1 2.5 5.4E-05 45.6 8.1 159 804-972 219-390 (733)
472 KOG4659 Uncharacterized conser 86.0 1.1E+02 0.0023 38.8 32.1 26 737-762 660-685 (1899)
473 PF02333 Phytase: Phytase; In 85.7 62 0.0013 35.7 22.3 199 816-1022 67-301 (381)
474 KOG1983 Tomosyn and related SN 85.6 11 0.00025 47.5 14.3 66 944-1016 203-268 (993)
475 KOG2377 Uncharacterized conser 85.6 5.3 0.00011 43.4 9.6 124 344-487 65-188 (657)
476 PF14761 HPS3_N: Hermansky-Pud 84.7 45 0.00097 33.2 15.5 146 860-1011 29-213 (215)
477 PF07569 Hira: TUP1-like enhan 84.5 5.5 0.00012 40.5 9.1 75 352-440 17-98 (219)
478 KOG4460 Nuclear pore complex, 84.3 26 0.00057 39.1 14.2 93 507-600 112-207 (741)
479 TIGR03606 non_repeat_PQQ dehyd 84.2 25 0.00055 39.9 14.9 112 890-1003 30-166 (454)
480 PF07569 Hira: TUP1-like enhan 84.2 4.9 0.00011 40.8 8.6 69 415-486 18-97 (219)
481 PF12657 TFIIIC_delta: Transcr 83.8 4.6 9.9E-05 39.4 7.9 31 408-438 86-122 (173)
482 PF05935 Arylsulfotrans: Aryls 83.3 30 0.00065 40.2 15.6 129 945-1076 153-312 (477)
483 KOG1900 Nuclear pore complex, 83.1 11 0.00024 47.0 12.1 147 866-1013 96-273 (1311)
484 KOG2063 Vacuolar assembly/sort 82.9 87 0.0019 38.7 19.2 249 744-1020 20-276 (877)
485 PF12768 Rax2: Cortical protei 82.8 39 0.00085 35.7 14.7 114 368-504 16-144 (281)
486 smart00036 CNH Domain found in 82.7 75 0.0016 34.3 25.0 210 804-1021 41-279 (302)
487 KOG1900 Nuclear pore complex, 82.5 15 0.00033 45.8 12.9 169 333-529 66-273 (1311)
488 PF14781 BBS2_N: Ciliary BBSom 82.3 37 0.0008 30.9 12.0 118 942-1071 1-131 (136)
489 PRK13615 lipoprotein LpqB; Pro 82.2 1.1E+02 0.0024 35.9 21.7 153 849-1012 336-502 (557)
490 PLN02193 nitrile-specifier pro 82.1 1.1E+02 0.0023 35.7 22.9 154 858-1017 228-415 (470)
491 TIGR03548 mutarot_permut cycli 82.1 84 0.0018 34.4 20.4 67 950-1017 123-199 (323)
492 PLN02153 epithiospecifier prot 82.0 87 0.0019 34.6 22.9 154 858-1017 85-289 (341)
493 PF11635 Med16: Mediator compl 81.8 90 0.0019 38.7 19.6 78 982-1060 259-345 (753)
494 TIGR03606 non_repeat_PQQ dehyd 81.6 40 0.00086 38.4 15.1 54 941-994 31-90 (454)
495 PF11725 AvrE: Pathogenicity f 81.3 1.6E+02 0.0034 38.8 20.9 382 449-963 359-767 (1774)
496 KOG0783 Uncharacterized conser 81.2 1.3E+02 0.0029 36.1 19.1 41 2-46 61-108 (1267)
497 PF12657 TFIIIC_delta: Transcr 80.5 8 0.00017 37.7 8.3 31 890-920 86-122 (173)
498 KOG1983 Tomosyn and related SN 80.4 47 0.001 42.2 16.8 37 344-381 34-70 (993)
499 KOG2247 WD40 repeat-containing 80.3 0.37 8.1E-06 52.4 -1.2 121 337-482 66-186 (615)
500 COG5167 VID27 Protein involved 79.8 27 0.00058 38.9 12.2 145 858-1012 478-632 (776)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-67 Score=523.38 Aligned_cols=479 Identities=22% Similarity=0.338 Sum_probs=391.1
Q ss_pred hhHHHHHHHH-------------HhHhcCcccc---HHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHH
Q 001318 5 SRELVFLILQ-------------LEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 68 (1101)
Q Consensus 5 ~~e~vrli~q-------------l~~esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 68 (1101)
+.|+|||+.| ||.|||+.+. ++.|.++||+|+|+.++..+..+. +++...+.++.||+.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 4599999999 9999999996 999999999999999999999984 4445556679999999999
Q ss_pred HHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCCchHHHHHHHHHHhhcccCCccccccc
Q 001318 69 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKL 148 (1101)
Q Consensus 69 lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~ 148 (1101)
||++..|....|+.+||+++.+|. ++.+++++|+.-|..++.....+...-......|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999988 59999999998887776553333222223578899999999999999999
Q ss_pred cCCCCChHHHHHHHHHhHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 001318 149 QFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQP 228 (1101)
Q Consensus 149 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~ 228 (1101)
+|++||++||+||++||+++|.||| ..+..|||+||+|++ .++|
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip---------------- 213 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP---------------- 213 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC----------------
Confidence 9999999999999999999999999 477799999999999 6666
Q ss_pred CCCCCCCCccccccCCCCCcCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCcccccCCc
Q 001318 229 TPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPV 308 (1101)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 308 (1101)
.. + .
T Consensus 214 ~q----------------------------------------------------------------------t--~---- 217 (519)
T KOG0293|consen 214 SQ----------------------------------------------------------------------T--W---- 217 (519)
T ss_pred ch----------------------------------------------------------------------h--h----
Confidence 10 0 0
Q ss_pred ccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeee
Q 001318 309 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV 388 (1101)
Q Consensus 309 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~ 388 (1101)
T Consensus 218 -------------------------------------------------------------------------------- 217 (519)
T KOG0293|consen 218 -------------------------------------------------------------------------------- 217 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEE
Q 001318 389 WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 468 (1101)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~ 468 (1101)
.++..|++.|+.+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ +
T Consensus 218 ------------qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--y 283 (519)
T KOG0293|consen 218 ------------QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--Y 283 (519)
T ss_pred ------------hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--e
Confidence 02455666666666666677777777777777776665555666678999999999999999999 7
Q ss_pred EEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 469 VITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 469 l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
|++|+.|..+++||+.+|.+...+. +|...+.+++|. +||..+++|+.|++|..||++....
T Consensus 284 LlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~--------------- 346 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNIL--------------- 346 (519)
T ss_pred EEecCchHheeeccCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchh---------------
Confidence 9999999999999999999988774 456788999985 5668899999999999999985331
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
..+.+.+...+..+++++||+++++.+.|..|++++.++......+..+. .+++.++|.|++++++.-.+.
T Consensus 347 ------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 347 ------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred ------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccC
Confidence 22333334456667777777889999999999999998877665554333 599999999999999999999
Q ss_pred cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeec
Q 001318 628 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 707 (1101)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 707 (1101)
.+++||++.. ..++.+.||...
T Consensus 418 ei~LWDl~e~-~lv~kY~Ghkq~--------------------------------------------------------- 439 (519)
T KOG0293|consen 418 EIHLWDLEEN-KLVRKYFGHKQG--------------------------------------------------------- 439 (519)
T ss_pred eeEEeecchh-hHHHHhhccccc---------------------------------------------------------
Confidence 9999999865 556655554321
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccc
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
.+++
T Consensus 440 -------------------------------------------~fiI--------------------------------- 443 (519)
T KOG0293|consen 440 -------------------------------------------HFII--------------------------------- 443 (519)
T ss_pred -------------------------------------------ceEE---------------------------------
Confidence 1111
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEe-cCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 865 (1101)
.-||. .+..++++|+ |++|+||+..+++.+.++.||...|+|++|+|.+..++|+|
T Consensus 444 ----------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 444 ----------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred ----------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 11111 2456899999 99999999999999999999999999999999999999999
Q ss_pred eccCeEEEEEeec
Q 001318 866 MDDSSIQIYNVRV 878 (1101)
Q Consensus 866 ~~dg~v~vwd~~~ 878 (1101)
++||+|+||....
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999998653
No 2
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-57 Score=479.77 Aligned_cols=574 Identities=15% Similarity=0.237 Sum_probs=471.6
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCccee-EeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
++|+++|+. |++... ..|.+-|+.+++.. .. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 666553 46889999998773 21 2344567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC
Q 001318 430 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 508 (1101)
.+++|++.+++.++ .++. |.+||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.+++|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 4666 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEE
Q 001318 509 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 587 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 587 (1101)
+...|++|..|+++++||+..... ...+..|...|+++.+++|+. .++++|.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996544 667788888888888877764 6999999999999
Q ss_pred EECCCCceeEEEcCCCCCCCcCeEEEccC-----CCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcc
Q 001318 588 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 662 (1101)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1101)
||+...+...+++.... +-++.+-++ |.++++.+.+|.+++||.+++ .+.........+ .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence 99988887777765544 666777776 679999999999999999988 333322211100 00
Q ss_pred cccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceE
Q 001318 663 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~ 742 (1101)
. ..........++....|..+.++|.++.....++. +....|.
T Consensus 285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-------G~ndEI~ 327 (775)
T KOG0319|consen 285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV-------GYNDEIL 327 (775)
T ss_pred -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhhc-------CCchhhe
Confidence 0 11112233455566667889999877655444433 4678888
Q ss_pred EEEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 743 RLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 743 ~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.+.|- |+.++++++++.+.+++|++.+.. .. .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~----------------------c~--ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSY----------------------CQ--IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCc----------------------eE--EEe--CchhheeeeeecccCcEEE
Confidence 88874 577889999999999999763211 10 133 3999999999888889999
Q ss_pred EEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecC
Q 001318 822 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKG 887 (1101)
Q Consensus 822 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~ 887 (1101)
+|+ |.++++|.++++ -++....+|.+.|.+++++.....+|++++.|+++++|++...+ +..+...
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999988433 34556789999999999998666899999999999999997621 1123457
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|...|++|+.+|+.+++||||.|++.+||+++. .....++.||.. .|.++.|++..+.+|+ +.|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999985 446778889886 8999999999999999 6999999999
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+. .|.. .|+ +++-++ +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~D-rvW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHND-RVW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccc-eeE--EEeecC-c
Confidence 99999999997 999999999999999999999999999999999999999887 4433 488 777777 5
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+++||+.||.|.+|.=.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999865544
No 3
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-58 Score=443.92 Aligned_cols=477 Identities=20% Similarity=0.308 Sum_probs=391.9
Q ss_pred hhHHHHHHHH-------------HhHhcCcccc----HHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhH
Q 001318 5 SRELVFLILQ-------------LEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 67 (1101)
Q Consensus 5 ~~e~vrli~q-------------l~~esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 67 (1101)
+.||||||+| ||+|++++|| +..|-+.|-+|+||.+++.++.| ++|++ -+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHH
Confidence 4589999999 9999999998 99999999999999999999999 88877 578899999
Q ss_pred HHHHhcCCCHHHHHHHHHhc--cccccccCHHHHHHhhhhhcccCcchhhhhhccCC-chH-HHHHHHHHHhhcccCCcc
Q 001318 68 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKS-ARSIMLVELKKLIEANPL 143 (1101)
Q Consensus 68 ~lEll~~~~~~~Al~~L~~~--l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~-~r~~l~~~l~~~i~~~~~ 143 (1101)
.|||+|.++...|..+||+. +.-|+..++++|-+|..||..+.++..+. |++ .++ .|..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~V--- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVHV--- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceEE---
Confidence 99999999999999999984 77778889999999999999999998887 666 444 458888888887777
Q ss_pred ccccccCCCCChHHHHHHHHHhHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 001318 144 FRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH 223 (1101)
Q Consensus 144 ~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~ 223 (1101)
+||.||..||.||++||+.+ |-+|++..+|
T Consensus 155 ---------VppSRLlaLlGQaLKWQqHQ------------------------------------GLLPPGt~iD----- 184 (508)
T KOG0275|consen 155 ---------VPPSRLLALLGQALKWQQHQ------------------------------------GLLPPGTTID----- 184 (508)
T ss_pred ---------cChHHHHHHHHHHhhhHhhc------------------------------------CCCCCCceee-----
Confidence 99999999999999999872 6788888888
Q ss_pred CCCCCCCCCCCCCccccccCCCCCcCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCcccccccccCCCCccc
Q 001318 224 GPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDE 303 (1101)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1101)
+|++..+.. ...+|
T Consensus 185 -LFRGkAA~K-----------------------------------------------------------------~~~Ee 198 (508)
T KOG0275|consen 185 -LFRGKAAMK-----------------------------------------------------------------DQEEE 198 (508)
T ss_pred -eccchhhhh-----------------------------------------------------------------hhHhh
Confidence 888775410 00111
Q ss_pred ccCCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe
Q 001318 304 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL 383 (1101)
Q Consensus 304 v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~ 383 (1101)
. |+..- .-...++.++.+.|..|||||+| |++|+.||.|.|||..+|+....
T Consensus 199 ~----------~Pt~l-----------------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKD 250 (508)
T KOG0275|consen 199 R----------YPTQL-----------------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKD 250 (508)
T ss_pred h----------chHHh-----------------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhh
Confidence 1 00000 00114567788999999999997 99999999999999999987653
Q ss_pred eeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC
Q 001318 384 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 463 (1101)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d 463 (1101)
..++ ....+.-|..+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+ -.+|...|+|+.||.|
T Consensus 251 LkYQ-----------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 251 LKYQ-----------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRD 317 (508)
T ss_pred hhhh-----------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccC
Confidence 2221 11246778999999999999999999999999999999999998853 2389999999999999
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC--C
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--R 541 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~ 541 (1101)
+. .+++++.|.+++|.-+++|++++.|+||...|+...| .++|+.+++++.||+|++|+..+.++..++.... .
T Consensus 318 ~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 318 NS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cc--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 99 5899999999999999999999999999999999987 5777999999999999999999999888776543 3
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCCCEE
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 620 (1101)
.|.++..-|... ..++++...++|+|-++ .|+.+..+.. ....+...+++.+|.|.++
T Consensus 394 ~vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 394 PVNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWI 452 (508)
T ss_pred cceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEE
Confidence 455555555443 57888999999999998 5777777753 2233456788899999999
Q ss_pred EEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccC
Q 001318 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD 700 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1101)
.+.+.|+.++.+.+.+| .+.+.+.-|...+.. ...-|.
T Consensus 453 YcigED~vlYCF~~~sG-~LE~tl~VhEkdvIG-----------------------------------------l~HHPH 490 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIG-----------------------------------------LTHHPH 490 (508)
T ss_pred EEEccCcEEEEEEeecC-ceeeeeecccccccc-----------------------------------------cccCcc
Confidence 99999999999999998 666666655554332 222345
Q ss_pred ccceeeccCCCcceeee
Q 001318 701 VKPRITEESNDKSKVWK 717 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~ 717 (1101)
.+.+++.+.||.+++|.
T Consensus 491 qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 QNLLASYSEDGLLKLWK 507 (508)
T ss_pred cchhhhhcccchhhhcC
Confidence 67889999999999995
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-55 Score=471.20 Aligned_cols=546 Identities=14% Similarity=0.196 Sum_probs=452.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC-CCCCeEEEEEecCCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 422 (1101)
..+.+++++.+||+++ |++++....+++|++.+++.+.. .+. |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 5678999999999995 88999999999999999977653 445 99999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 501 (1101)
|+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+.|+++++||+.++.. +.++..|...|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999988666 799999999999999998766789999999999999996554 8888999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.|. +|+..+++++.|..+.+||+...+....++.. ..+.++.+.+++. ...+.+++++|.
T Consensus 198 L~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeec--cCCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 9985 45678999999999999999665555444332 2344444444311 011468999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|.++. +..+.+.|....+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 9999999999998877665432 223666666666666777778899999998888 77888877777654 2
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
+...+ ++...+++++..+.+|++++.+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 22222 56789999999999999987764332 22 5699999
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC-CEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 820 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~l 820 (1101)
.++....+|..|++++.|.++++|.++.... ..... ....+|.+.|.+++++..+ .+|
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence 9999888888999999999999998732111 00111 1223599999999998765 478
Q ss_pred EEEe-CCeEEEEECCCCc---------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 821 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
++++ |.++++|++...+ +..+...|...|++++++| +.+++|+|+.|.+.+||+++......++.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 9999999987511 1123356899999999999 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 969 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~ 969 (1101)
.|++|.|+|..+.|+|+|.|++|+||.+++ ..+++++.||.. .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999998 558999999985 8999999999999999 6999999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++|+.++. +|.+.|++++.+|++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999886 8999999999999999999999999999996443
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-52 Score=444.03 Aligned_cols=572 Identities=18% Similarity=0.294 Sum_probs=448.8
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
...+.+...|++++.||+|.. +++-...|.+.+-++.....+++++| ...|.|+.||||
T Consensus 49 Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPn 107 (893)
T KOG0291|consen 49 TLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPN 107 (893)
T ss_pred eEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCC
Confidence 334568999999999999995 66667889999999988888876554 458999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCce-----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce--EEE
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI 491 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~ 491 (1101)
|+++|+|.. +.+.||....... +....++.+|-..|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.
T Consensus 108 g~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~ 184 (893)
T KOG0291|consen 108 GKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYA 184 (893)
T ss_pred CcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEe
Confidence 999998864 5699998765322 334456789999999999999999 899999999999999987665 567
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-----cC---------CCCceeEEEEccCCceEEe
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~ 557 (1101)
+.+|.+.|.+.-| ..+...+++.+.||.+.+|..+.......- .+ ....+....|..-. +.+-
T Consensus 185 l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~l 261 (893)
T KOG0291|consen 185 LNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYL 261 (893)
T ss_pred ccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeee
Confidence 8999999987666 445578999999999999987732111000 00 00011111111110 1122
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-CcEEEEEecC
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSD 636 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~ 636 (1101)
......+.+.+|++..+.|++|-..|...+|++....+++.+....+ .|..++|+..|.+|+.|+.. |.+.+|+..+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 22235788999999999999999999999999999999999986544 68999999999999999765 7899998765
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
. ..+...
T Consensus 340 E-sYVlKQ------------------------------------------------------------------------ 346 (893)
T KOG0291|consen 340 E-SYVLKQ------------------------------------------------------------------------ 346 (893)
T ss_pred c-ceeeec------------------------------------------------------------------------
Confidence 5 221111
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
++|...+.+++++|||+++++++.||.|+|||.. +|.+..
T Consensus 347 ------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~v 386 (893)
T KOG0291|consen 347 ------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFV 386 (893)
T ss_pred ------------------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEE
Confidence 3488899999999999999999999999999873 344332
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccC-eEEE
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDS-SIQI 873 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg-~v~v 873 (1101)
. + ..|.+.|+.+.|+..|+.+++.+ ||+|+.||+...+..++|.... -...|++..| .|.++..|+.|. .|+|
T Consensus 387 T-F--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 387 T-F--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFV 462 (893)
T ss_pred E-e--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEE
Confidence 2 2 23999999999999999999999 9999999999999999997654 3577899999 899999998876 8999
Q ss_pred EEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 874 YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 874 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
|++++|+++..+.||.++|.+++|+|+|..|+|+|+|++||+||+-.... ....+... ..+..++|+|||+.
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~-------sdvl~vsfrPdG~e 534 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIR-------SDVLAVSFRPDGKE 534 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeec-------cceeEEEEcCCCCe
Confidence 99999999999999999999999999999999999999999999876321 12223322 36799999999999
Q ss_pred EEE-EeCCeEEEEEcCCceeeeeccCC------------------CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 954 FLV-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~~~~~~------------------~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
|++ .-||+|.+||.+.+.++..+... ......+.+++|+||.++++|+....|++|++.++
T Consensus 535 laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 535 LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 999 68999999999887766443321 12467899999999999999999999999999999
Q ss_pred eeeeecCCCccc--------------------------------------C--------CCCCCCCccceEEEEeCCCCC
Q 001318 1015 KLRCRINPSAYL--------------------------------------P--------AGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 1015 ~~~~~~~~~~~~--------------------------------------~--------~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
.++++++.+... | ..+....|...++.|+| .|+
T Consensus 615 vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgr 693 (893)
T KOG0291|consen 615 VLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGR 693 (893)
T ss_pred heeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECC-CcC
Confidence 988877532210 0 01122246677999999 578
Q ss_pred EEEEEecCCcEEEEeccC
Q 001318 1049 EFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~ 1066 (1101)
-+++++..| |.|+.+.+
T Consensus 694 aFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 694 AFAAATTEG-LLIYSLDT 710 (893)
T ss_pred eeeeecccc-eEEEecCC
Confidence 888888777 56777744
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-50 Score=414.00 Aligned_cols=573 Identities=14% Similarity=0.148 Sum_probs=431.9
Q ss_pred EEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeE
Q 001318 352 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 431 (1101)
Q Consensus 352 ~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i 431 (1101)
.-.|.|+.++.+.+ ..|.+-+++...... ++..|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 34566666777655 678888887765543 588999999999999999999999999999
Q ss_pred EEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCc
Q 001318 432 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 432 ~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-++..
T Consensus 84 RIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP- 160 (603)
T KOG0318|consen 84 RIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP- 160 (603)
T ss_pred EEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc-
Confidence 99998874433 22356677899999999999996 33333 3444555555568889999999999999999866543
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
-.+++|+.|++|.+|+-..-+-...+..|...|.++.|+|| |+++++++.||.|.+||-
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD---------------------G~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD---------------------GSRFATAGSDGKIYIYDG 219 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC---------------------CCeEEEecCCccEEEEcC
Confidence 57999999999999965544444444555555555555555 468999999999999999
Q ss_pred CCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhh
Q 001318 591 DSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 669 (1101)
Q Consensus 591 ~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1101)
.+|+.+..+. ...|.+.|.+++|+||++.+++.+.|.+++|||+.+. .+++++.-... +.
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~-v~----------------- 280 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST-VE----------------- 280 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc-hh-----------------
Confidence 9999999997 3345568999999999999999999999999999988 66655532111 00
Q ss_pred hhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCC
Q 001318 670 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS 749 (1101)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 749 (1101)
...+........|++.+.+|.+.+++.......... .+|...|++++.+++
T Consensus 281 ----------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 281 ----------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVSPD 331 (603)
T ss_pred ----------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEcCC
Confidence 111112223678899999999999998875522211 579999999999999
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEE
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS 829 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~ 829 (1101)
+++|++++.||.|.-|+...+ ..- .+.+..|...|.+++.+..+.++.++-|.+++
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g----------------------~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSG----------------------TSD--RLAGKGHTNQIKGMAASESGELFTIGWDDTLR 387 (603)
T ss_pred CCEEEeeccCceEEEEecCCc----------------------ccc--ccccccccceEEEEeecCCCcEEEEecCCeEE
Confidence 999999999999999987432 211 13334599999999999888888777799999
Q ss_pred EEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE
Q 001318 830 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS 907 (1101)
Q Consensus 830 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~ 907 (1101)
+.++........ ++ ......+++..+ ++.+++.++.++.+.+=|...-. .+. -.-...+++++|++..++.|
T Consensus 388 ~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 388 VISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred EEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCCCEEEEe
Confidence 999875443322 12 123344888888 66677666666555554443222 111 12346789999999999999
Q ss_pred eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCee
Q 001318 908 GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPIT 986 (1101)
Q Consensus 908 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~ 986 (1101)
+.|+.|+||.+...+......... |. +.|+.++||||+.+||++ ..+.+.+||+.+.+.... .-.-|...|.
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FHtakI~ 534 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFHTAKIN 534 (603)
T ss_pred cccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeeeeeeEE
Confidence 999999999999866433222222 22 489999999999999997 778999999999887332 2224899999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 987 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+++|||+.+++|+||.|..|.||+++.....-.++ .-|..+ |+ .+.|.. ...+++.+.|.+|++|++.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEec--CceEEeccCcceeEEeccc
Confidence 99999999999999999999999998765553433 223333 66 889984 6899999999999999984
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-54 Score=425.24 Aligned_cols=376 Identities=20% Similarity=0.355 Sum_probs=303.6
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 407 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (1101)
.+......++....-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.|...+. +.++|.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~ 157 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHK 157 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCc
Confidence 44555555666667789999999999999996 9999999999999999987776 489999
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-----CCCeEEEEEecCCCcEEEEe
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-----d~~~~~l~s~~~d~~i~iwd 482 (1101)
..|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd 233 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD 233 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence 9999999999999999999999999999999987754 5889999999999965 455 799999999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
+..+.++..+.||+.+|+|++|- ++ .++++|+.|++|++|+...+.....+.+|...|+.++.+.|--
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~--------- 301 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV--------- 301 (480)
T ss_pred ccCceEEEEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh---------
Confidence 99999999999999999999983 33 4999999999999999999889999999999999998876532
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
+..=+|.|.++..-+.+ +. ..+.+..+ ....-..+..|++|++|.++.+|+....++++.
T Consensus 302 -LRtgaf~~t~~~~~~~s--------e~-~~~Al~rY----------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~ 361 (480)
T KOG0271|consen 302 -LRTGAFDHTGRKPKSFS--------EE-QKKALERY----------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT 361 (480)
T ss_pred -hhccccccccccCCChH--------HH-HHHHHHHH----------HHhhccCcceeEEecCCceEEEecccccccchh
Confidence 11111111111100000 00 00000000 011111235556666666666665332211111
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC
Q 001318 643 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 722 (1101)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 722 (1101)
.
T Consensus 362 r------------------------------------------------------------------------------- 362 (480)
T KOG0271|consen 362 R------------------------------------------------------------------------------- 362 (480)
T ss_pred h-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 723 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
. .
T Consensus 363 ----------------------------------------------------------------------------m--t 364 (480)
T KOG0271|consen 363 ----------------------------------------------------------------------------M--T 364 (480)
T ss_pred ----------------------------------------------------------------------------h--h
Confidence 1 1
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++|||+++.++
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeee
Confidence 2778889999999999999999 99999999999999999999999999999999 999999999999999999999999
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 444 ~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999995
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-48 Score=397.20 Aligned_cols=538 Identities=17% Similarity=0.223 Sum_probs=423.0
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|...++-..|||.|-| +|+|...|.|||||....+.+...+|++ -.++|..++|++|+
T Consensus 54 iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd~ds 115 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWDFDS 115 (603)
T ss_pred eeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeCCCC
Confidence 34569999999999999996 9999999999999998866666555553 35699999999999
Q ss_pred CeEEEEEcC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 420 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 420 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
++|++.+.. |.+.+||. |..+. ++.||...|++++|-|.... .++||++|++|.+|+=.--+...++..|
T Consensus 116 ~RI~avGEGrerfg~~F~~DS--G~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H 189 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWDS--GNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH 189 (603)
T ss_pred cEEEEEecCccceeEEEEecC--CCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence 999987653 34556654 44444 68899999999999998776 8999999999999985555666788889
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec---CCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...|+++.| ++||.++++++.||.|.+||-.+++....+. .|.+.|.+++|+||+
T Consensus 190 skFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-------------------- 247 (603)
T KOG0318|consen 190 SKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-------------------- 247 (603)
T ss_pred ccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC--------------------
Confidence 999999998 4667899999999999999999998888776 566666666666665
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
..+++++.|.+++|||+.+.+++.++...... .....+-|. ...|++.+.+|+|.+++...+ ...+.+.+|...+
T Consensus 248 -~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 248 -TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSI 323 (603)
T ss_pred -ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheecccccce
Confidence 47999999999999999999999998754331 122344454 668999999999999999999 4889999998765
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
.. ...++++.++++++.||.|.-|+.........
T Consensus 324 Ta-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~----- 357 (603)
T KOG0318|consen 324 TA-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL----- 357 (603)
T ss_pred eE-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCcccccc-----
Confidence 42 23456789999999999999999987544322
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
....|...|.+++.+..+. +++++-|.++++.++......... .. .......++
T Consensus 358 -~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~l 411 (603)
T KOG0318|consen 358 -AGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGL 411 (603)
T ss_pred -ccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeE
Confidence 2245999999999998777 788888889988776332211100 00 023445589
Q ss_pred EEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe--eeecCcc
Q 001318 812 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHS 889 (1101)
Q Consensus 812 ~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~ 889 (1101)
+..+++.+++.+.++.|.+..-. ..+.+.. ..-...+++++| ++..+|+|+.||.|+||.+..+++. ..+..|.
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~--~~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQ--TKVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecC--Ccceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 99999988888887666666522 2222332 345688999999 9999999999999999999876533 3567799
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 968 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~ 968 (1101)
++|++++||||+.+||++...+.+.+||+.+.+.... .... |. ..|.+++|+|+.+++|+ +-|..|.||+++
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F---Ht---akI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF---HT---AKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee---ee---eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 9999999999999999999999999999999765222 2222 22 37899999999999999 589999999998
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
.....- ....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 561 kP~~~i-~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 561 KPAKHI-IIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Chhhhe-EeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 765542 2334788889999998 55668888899999999874
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-49 Score=418.57 Aligned_cols=610 Identities=14% Similarity=0.210 Sum_probs=447.8
Q ss_pred CCcEEEEEe-cCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 346 SSPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~s-pdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..+..+..+ ..|+++ +++.-..|.+||+.+|+..... ....-...|+|++-+||.-+||+
T Consensus 22 aN~~~~~~~~~~Gr~v--a~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAV 82 (888)
T KOG0306|consen 22 ANINFVVKRSGKGRAV--AVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAV 82 (888)
T ss_pred cceeEEEeecCCCcEE--EEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEE
Confidence 334444333 357753 3334478999999999544320 12233468999999999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
|..||.|+||+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..++||...|+..-|
T Consensus 83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F 157 (888)
T KOG0306|consen 83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF 157 (888)
T ss_pred EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence 9999999999999875433 6999999999999999999 7999999999999999999999999999999998877
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
.. +..++++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.
T Consensus 158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse 212 (888)
T KOG0306|consen 158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSE 212 (888)
T ss_pred cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCc
Confidence 43 347999999999999999999888777777777676666654 36899999999
Q ss_pred EEEEECCCCc------------eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc----cc
Q 001318 585 IKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN----LA 648 (1101)
Q Consensus 585 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~ 648 (1101)
+++|++.... ...++...+ ......++..++++++++-+.|..+.++.+.+..+..+.+.. ..
T Consensus 213 ~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K 291 (888)
T KOG0306|consen 213 LKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAK 291 (888)
T ss_pred eEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhh
Confidence 9999982210 111111111 123445667778899999999999999999876443332221 00
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc-cceeeccCCCcceeeeccccC-C-Cc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PN 725 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~-~-~~ 725 (1101)
.... .......+ ......-...-......+.+... ++...... ..++. -.++++..|.++... . +.
T Consensus 292 kka~--t~e~~~~v---~~sl~~~i~r~~~ir~~~kiks~-----dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~ 360 (888)
T KOG0306|consen 292 KKAE--TEENEDDV---EKSLSDEIKRLETIRTSAKIKSF-----DVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPE 360 (888)
T ss_pred hhcc--ccccccch---hhhHHHHHHHHHheechhheeEE-----EEEecCCcceeEEE-eecCceEEEEeccCCCCCcc
Confidence 0000 00000000 00000000000000000000000 11111111 23333 556788888877621 1 11
Q ss_pred cccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCC
Q 001318 726 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 805 (1101)
....-.+...+|...|.+++|+.+...++ .+.++.+++|+. .+.+.++.. ..
T Consensus 361 ~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~----------------------~t~kciRTi-----~~ 412 (888)
T KOG0306|consen 361 ADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNR----------------------DTLKCIRTI-----TC 412 (888)
T ss_pred ccccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEc----------------------cCcceeEEe-----cc
Confidence 11222222356999999999999987444 445567888875 344444332 23
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-----c
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----D 879 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~ 879 (1101)
..+.+..|-|.++++++|. .|.+.+||+.+...+.+.+.|.+.|..++.+| |++.+++|+.|.+|++||..- +
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCc
Confidence 4788899999999999999 79999999999999999999999999999999 999999999999999999853 1
Q ss_pred eEeeeec-------CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc
Q 001318 880 EVKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952 (1101)
Q Consensus 880 ~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 952 (1101)
...+.+. .-...|.|+.+||||++||.+=-|.+|+||-+++ ..+.-.+.||.. +|.++.+|||++
T Consensus 492 t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DSk 563 (888)
T KOG0306|consen 492 TQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDSK 563 (888)
T ss_pred ccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCcC
Confidence 1111111 1346799999999999999999999999999998 334556677775 999999999999
Q ss_pred EEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC
Q 001318 953 HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1031 (1101)
Q Consensus 953 ~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1031 (1101)
.+++ +.|+.|++|-++-|.|-+.+. +|.+.|.++.|-|+..++++++.|+.|+-||-...+.+..+. +|+
T Consensus 564 livTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~ 634 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHH 634 (888)
T ss_pred eEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cch
Confidence 9999 699999999999999999987 899999999999999999999999999999999999998887 555
Q ss_pred CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1032 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1032 ~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
.. |+ +++-+| +|.+++++|.|.+|++|.-.+
T Consensus 635 ~e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 SE-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred he-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 55 88 788888 789999999999999999766
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-47 Score=403.57 Aligned_cols=546 Identities=15% Similarity=0.234 Sum_probs=422.0
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 428 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 428 (1101)
-.+.|++||..++.. ..+.|-++|+..++... ..-.+...|.+++.||+|.+|++...+
T Consensus 18 Gnl~ft~dG~sviSP--vGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISP--VGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCEEEec--cCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 457899999864443 34789999998765432 233567799999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc--------eEEEecCcccCeE
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 500 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 500 (1101)
|...+-++.....+.. + ....+|.++.|||||+ +++.|. .+.+.||...... ..+++.+|...|.
T Consensus 77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 9999988876543432 1 2357899999999999 455444 5689999865322 2457789999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
++.|+ .|.++|++|+.|-++++|.++..+. ...+.+|...|...-|.. +...+++
T Consensus 150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~---------------------~~~~l~t 206 (893)
T KOG0291|consen 150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA---------------------NSLDLYT 206 (893)
T ss_pred EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc---------------------CcceEEE
Confidence 99995 5558999999999999999987665 334455555555544444 4456999
Q ss_pred EeCCCcEEEEECCCC-----------------------ce-----eE----EEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 579 AGDDFSIKFWDMDSV-----------------------QL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~-----------------------~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
.+.||.+.+|..... +. .. ..-.......|++.+|++..+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999987611 10 00 00011122467888888888888888888
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|...+|++..- .+++.+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 88888877544 3332221
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-ceEEeeeccccccCCCCceeeeecCc
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
....+|..++|+..|..|+.++.. |.+.||+++.+.+
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY------------- 342 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY------------- 342 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence 134678999999999999998886 9999999854322
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 864 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las 864 (1101)
.++..+|...+.+++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+++.|+. .++.+++
T Consensus 343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 133345999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred EeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEEEEEeCCC-ceEEEeCCCcccccceeeecCCCCCCCCCCC
Q 001318 865 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 942 (1101)
Q Consensus 865 g~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 942 (1101)
.+-||+|+.||+..++..+++.... -...+++..|.|..++.|+.|. .|.||++++|+ .+.++.||.. +|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence 9999999999999999999987543 2356788888899999998886 49999999976 5788889885 99
Q ss_pred eEEEEcCCCcEEEE-EeCCeEEEEEcCCc-eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 943 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 943 ~~~~~s~dg~~la~-~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
.+++|+|+|..|++ +-|++|++||+-.. ..+.++ .+...++.++|+|||+-|++++.||.|.+||+..+..+..+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 68999999998654 233333 34678999999999999999999999999999988877554
Q ss_pred CCCcccCCC----------CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC--ccccCC
Q 001318 1021 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1074 (1101)
Q Consensus 1021 ~~~~~~~~~----------~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~ 1074 (1101)
.....+..| +....-....++|++ ||..+++|+..+.|+++++.++- .+|++.
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 422222222 112223345899999 79999999999999999998886 444443
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-51 Score=401.11 Aligned_cols=364 Identities=18% Similarity=0.240 Sum_probs=299.0
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 588999999999999999999999999999999999976444 7899999999999999999 79999999999999
Q ss_pred eCCCCceE-EEecCcccCeEEEeeee---cCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 482 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 482 d~~~~~~~-~~~~~h~~~v~~v~~~~---~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
|.++|+++ ..|.+|...|++++|.+ .+...+|++++.||.|+|||+..+.++..+.+|...|+++.|..+|
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g----- 259 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG----- 259 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence 99999876 68999999999999865 3456799999999999999999999999999999999999997766
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++|+.|++|++|+...|.+...+++|.+ .|+.++.+-|- .| ++|
T Consensus 260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~L--------------Rtg 305 (480)
T KOG0271|consen 260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VL--------------RTG 305 (480)
T ss_pred -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hh--------------hcc
Confidence 599999999999999999999999998877 78888876431 11 112
Q ss_pred cccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 638 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
+|.+.+ ...+
T Consensus 306 -----------------------af~~t~--------------------------------------------~~~~--- 315 (480)
T KOG0271|consen 306 -----------------------AFDHTG--------------------------------------------RKPK--- 315 (480)
T ss_pred -----------------------cccccc--------------------------------------------ccCC---
Confidence 111111 0000
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
. ..+++.. .+.+
T Consensus 316 --~---~se~~~~--------------------------------------------------------------Al~r- 327 (480)
T KOG0271|consen 316 --S---FSEEQKK--------------------------------------------------------------ALER- 327 (480)
T ss_pred --C---hHHHHHH--------------------------------------------------------------HHHH-
Confidence 0 0000000 0000
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+..+.-..++.+++|+ |.++.+|+-.. .+++....+|..-|+.+.||| |++++|+++-|..|++||
T Consensus 328 -----------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 328 -----------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD 395 (480)
T ss_pred -----------HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence 0001112346788888 68899998754 457778899999999999999 999999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
..+|+.+..|+||-++|..++||.|.++|++++.|.++++|++++.+. .
T Consensus 396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~-------------------------- 444 (480)
T KOG0271|consen 396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----K-------------------------- 444 (480)
T ss_pred CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----c--------------------------
Confidence 999999999999999999999999999999999999999999988321 0
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
....+|.+.|+++.|+|||+.+++|+.|..+++|.
T Consensus 445 --------------------~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 445 --------------------QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------------ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 11237889999999999999999999999999985
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-48 Score=411.13 Aligned_cols=548 Identities=13% Similarity=0.198 Sum_probs=418.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
..+..|+|++-+|+.- +||+|..||.|+||+..++..+. .+.||...|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceE
Confidence 3456899999999987 59999999999999999886655 388999999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
|+||.|+.|.+||+-...-+ ..+.||.+.|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.++++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 99999999999999875433 36899999999999998777 89999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
++.. +.+++++.|+.+++|++...... ......+++..-|. +.....+ ..--+...++++++++-+.|
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~------~~~~~~~s~~~~G~-~~rqsk~-R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDE------KETNRYISTKLRGT-FIRQSKG-REINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeeccccc------ccccccceeeccce-eeeccCC-ceeEEeecCcccEEEEecch
Confidence 9854 58999999999999998332111 01112222222232 1111222 23334556677788888999
Q ss_pred CcEEEEECCCCceeEEE--------------------------------cCCCCCCCcCeEEEccCCC---EEEEEeCCC
Q 001318 583 FSIKFWDMDSVQLLTSI--------------------------------DADGGLPASPRIRFNKDGC---LLAVSTNDN 627 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~---~l~~~~~dg 627 (1101)
..+.++.+.+.+.+... ..-.....+.++.+.|+++ .|+. ..++
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nN 344 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANN 344 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecC
Confidence 99999998753211000 0001123456777777543 3333 6678
Q ss_pred cEEEEEecCcccc-c-------cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccccc
Q 001318 628 GIKILATSDGIRL-L-------RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 699 (1101)
Q Consensus 628 ~i~iw~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1101)
++.+|.++..... . -.+.+|...+. ...++.
T Consensus 345 tv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR-----------------------------------------sl~vS~ 383 (888)
T KOG0306|consen 345 TVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR-----------------------------------------SLCVSS 383 (888)
T ss_pred ceEEEEeccCCCCCccccccceeeeccchhhee-----------------------------------------EEEeec
Confidence 8888887652111 0 11222222211 112223
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
+ ..++..+..+.+++|+..+.+..... ....+.+..|-|.+++++.|..+|.+.+||+...
T Consensus 384 d-~~~~~Sga~~SikiWn~~t~kciRTi---------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--------- 444 (888)
T KOG0306|consen 384 D-SILLASGAGESIKIWNRDTLKCIRTI---------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASA--------- 444 (888)
T ss_pred C-ceeeeecCCCcEEEEEccCcceeEEe---------ccccEEEEEecCCCceEEEeccCCceEEEEeehh---------
Confidence 3 34444445589999998865433322 3357889999999999999999999999997422
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-----Cceee--------EecCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-----FKTMA--------TFMPP 845 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-----~~~~~--------~~~~~ 845 (1101)
.++.. .. .|.+.|..++.+||++.+++|+ |.+|++||..- +...+ +++ -
T Consensus 445 -------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l 507 (888)
T KOG0306|consen 445 -------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-L 507 (888)
T ss_pred -------------hhhhh-hh--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-c
Confidence 11111 11 3999999999999999999999 99999999741 22211 222 3
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-||.||..|||++.++|||.|++|+||-++-|..
T Consensus 508 ~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-- 584 (888)
T KOG0306|consen 508 EDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-- 584 (888)
T ss_pred cccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh--
Confidence 56799999999 999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
.+.+-+|. .+|.++.|-|....+.+ +.|+.|+-||..+.++++.+. +|...|+|++.+|+|.+++++|.|.
T Consensus 585 ---HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 585 ---HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred ---hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCc
Confidence 34444554 48999999999888887 799999999999999999886 8999999999999999999999999
Q ss_pred eEEEEEcCCcee
Q 001318 1005 TVCVFSAANLKL 1016 (1101)
Q Consensus 1005 ~v~vwd~~~~~~ 1016 (1101)
+|++|.-....+
T Consensus 657 sIRlwE~tde~~ 668 (888)
T KOG0306|consen 657 SIRLWERTDEIL 668 (888)
T ss_pred eeEeeeccCcce
Confidence 999999765433
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-46 Score=397.58 Aligned_cols=637 Identities=15% Similarity=0.167 Sum_probs=434.9
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE--E
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA--Y 426 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~--~ 426 (1101)
..++-+|..-.+..-++ ..|.+||+...++-+ ++..|..+++|+|||++|+|+|+| +
T Consensus 41 ~gLa~~p~Sgl~aYpAG--CvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSGLCAYPAG--CVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred CcccccccccceeeccC--cEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 44555665442222222 578899988765544 577888899999999999999997 4
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC--CCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
....++||++.....+. +|..|.-.|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence 67789999999876555 6888999999999999999 6776664 5568889887654443322 4456888887
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceee---ecCCCC--------------------ceeEEEEccCCce-------
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPGR--------------------WCTTMAYSADGTR------- 554 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~--------------------~v~~~~~s~~~~~------- 554 (1101)
+.+|.|+++.+. ..|++|.++....... +.+... .-.+.+++..|..
T Consensus 174 --sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRR 250 (1080)
T KOG1408|consen 174 --SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRR 250 (1080)
T ss_pred --ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhh
Confidence 567789998874 8899999886552210 111000 0122333333321
Q ss_pred ---EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC----------------------CCCCCCcC
Q 001318 555 ---TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPASP 609 (1101)
Q Consensus 555 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v~ 609 (1101)
.+...+.....|++++. +++++|+.+|.|++|+..+-..+.+++. ........
T Consensus 251 LLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I 328 (1080)
T KOG1408|consen 251 LLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI 328 (1080)
T ss_pred hhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee
Confidence 01112233444555554 6899999999999999877655544431 11122345
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEecCcccccc--ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccc
Q 001318 610 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR--TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 687 (1101)
Q Consensus 610 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1101)
.+.|++....|.+...|..+++||+++-.+.-+ .+--|..-+.. +..+.
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~-----Ve~~p------------------------ 379 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWD-----VENLP------------------------ 379 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeee-----ecccc------------------------
Confidence 688999999999999999999999987633222 12222221111 10000
Q ss_pred cCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe-ee
Q 001318 688 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL-WK 766 (1101)
Q Consensus 688 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i-w~ 766 (1101)
...........+.+ -+++++.|++||+|++.........+. . .++.+-..++ ..|+...+ .|
T Consensus 380 ~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR----------N----ils~~l~ki~--y~d~~~q~~~d 442 (1080)
T KOG1408|consen 380 CNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR----------N----ILSANLSKIP--YEDSTQQIMHD 442 (1080)
T ss_pred ccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeec----------c----cchhhhhcCc--cccCchhhhhh
Confidence 01112222233333 388999999999999986322221110 0 0111110011 11111110 00
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
. ..-++|-.... . ......++++++||+|++||+|. .|+++||++.+.+....+..|
T Consensus 443 ~---------------~~~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 443 A---------------SAGIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred c---------------cCCcccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 0 00011111100 1 11466799999999999999999 799999999999988999999
Q ss_pred CCCeEEEEEecC--CCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCC--CEEEEEeCCCceEEEeCCC
Q 001318 846 PPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 846 ~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~D~~v~iwd~~~ 920 (1101)
+.+|.|+.||-. ..++||+++.|+.|.|||+.. ..+++++.+|+..|++|.|.-.| ..++++|.|+.|.+ +...
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~q 579 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQ 579 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhc
Confidence 999999999853 357999999999999999964 57789999999999999998877 78999999997654 3332
Q ss_pred cccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccC-CCCCCCeeEEEEcCCCCEEE
Q 001318 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~ 998 (1101)
... ...+.....+......+..++..|..+++++ +.|+.|+|||+.++++.+.|.. ++|.+....+...|.|-||+
T Consensus 580 k~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 580 KAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred ccc--CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 110 0111111112222356789999999999999 7999999999999999999985 35678899999999999999
Q ss_pred EEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC-----ccccC
Q 001318 999 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKWGV 1073 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~-----~~~~~ 1073 (1101)
+...|.++.++|+.+|+++.++. ||... |. .+.|.+ |.+.|++.+.||+|+||.++... .....
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence 99999999999999999999887 54333 55 899999 67899999999999999997743 22233
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001318 1074 PPPVDNGSTSSMPATPPVGGSGSDQA 1099 (1101)
Q Consensus 1074 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1101)
.+...+++....|.+|..++.+++++
T Consensus 727 lr~rq~~~~~~~pl~p~~p~d~~~~~ 752 (1080)
T KOG1408|consen 727 LRVRQLEKFIAVPLEPDNPNDASCSA 752 (1080)
T ss_pred HHHHhccCCcCCCCCCCCCCCCcccc
Confidence 44556667777788888877777653
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7e-41 Score=354.44 Aligned_cols=553 Identities=13% Similarity=0.147 Sum_probs=375.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
.|...++|++|||+|+| +|+|. ....++||++.....+. -+..|.-.|+|++|+|.++
T Consensus 76 ssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~k 135 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNK 135 (1080)
T ss_pred ccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCc
Confidence 47889999999999997 99987 45679999998876655 3788999999999999999
Q ss_pred eEEEEEc--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE-------
Q 001318 421 LFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI------- 491 (1101)
Q Consensus 421 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~------- 491 (1101)
|+++.+. |..|.+||+..+.... -+.-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 136 yvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gR 208 (1080)
T KOG1408|consen 136 YVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGR 208 (1080)
T ss_pred EEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccch
Confidence 9998764 5678899987654332 223456899999999999 788877 46899999876652110
Q ss_pred ------e------------------------cCc-----------------ccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 492 ------F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 492 ------~------------------------~~h-----------------~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
+ .|| +..-+|+|. +.++|+.|+.+|.|++
T Consensus 209 s~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrl 284 (1080)
T KOG1408|consen 209 SYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRL 284 (1080)
T ss_pred hhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeee
Confidence 0 011 011233443 2268999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEecccc---CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK---RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID- 600 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 600 (1101)
|+..+..-..++......-..++--.+-..+..+... .....+.|++....+.+...|..+++||++.-..+....
T Consensus 285 Fnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s 364 (1080)
T KOG1408|consen 285 FNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS 364 (1080)
T ss_pred cCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee
Confidence 9887755544443221110111100001111221111 123357789999999999999999999998744322111
Q ss_pred CCCCCCCcCeEEEcc-----------CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhh
Q 001318 601 ADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA 669 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1101)
...|...|+++.--| -...+++++.|++|++|++..+ .--..+.......
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c-tnn~vyrRNils~------------------ 425 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC-TNNQVYRRNILSA------------------ 425 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc-cccceeecccchh------------------
Confidence 111122333333222 0234889999999999998763 1111110000000
Q ss_pred hhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee-eccccCCCccccccccCccccccceEEEEEcC
Q 001318 670 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW-KLTELSEPNQCRSLRLPENLRATKISRLIFTN 748 (1101)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 748 (1101)
+...++ ..|++..+. |........... ........+.+++++|
T Consensus 426 ------------------------------~l~ki~--y~d~~~q~~~d~~~~~fdka~~----s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 426 ------------------------------NLSKIP--YEDSTQQIMHDASAGIFDKALV----STCDSRFGFRALAVSP 469 (1080)
T ss_pred ------------------------------hhhcCc--cccCchhhhhhccCCcccccch----hhcCcccceEEEEECC
Confidence 000000 000111000 000000000000 0012557899999999
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec---CCCEEEEEe-
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS- 824 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~---dg~~la~~s- 824 (1101)
+|++|+++..-|.++||++..-.. . .....|+..|.|+.||. ..++||+++
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~---------------------~----~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEY---------------------T----CFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcceecccCccCceEEEEehhhhh---------------------h----hheecccceeEEEeecCchhhhHhhhhccC
Confidence 999999999999999999843211 0 11123999999999985 357899999
Q ss_pred CCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCC--cEEEEEeccCeEEEEEeecceEeeeecCc-----ccCeeEEE
Q 001318 825 GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~~h-----~~~V~~l~ 896 (1101)
|.-|+|||+. +...++++.+|...|+++.|.. .| ..+++++.|..|.+--.+...-...+..| ...+..|+
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 8899999997 4567788999999999999988 44 67778888987765433321111122111 24588999
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeee
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQ 975 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~ 975 (1101)
..|..+++++++.|+.|+||+++.+++ .+.+.+.....+....+...|.|.|+|+ +.|+++.+||.-+++|+.+
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 999999999999999999999999875 3334444444467889999999999999 6999999999999999998
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.. ||+..|+.+.|++|.+.|++++.||.|.||.+...
T Consensus 679 m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 MT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 77 99999999999999999999999999999998754
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=337.94 Aligned_cols=586 Identities=14% Similarity=0.155 Sum_probs=430.5
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
..|..-|..++++.+.+....+||.+.-..+.. -..+...|+|++=..+--|.|.| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 667777777899999999999999987766652 34678899999865544444433 34
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ce----EEEecCcccCeEEEeee
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~v~~~ 505 (1101)
|.+|.. |+.++. .+.+|...|.-+.- -|. .++++..++.+.||+..++ .. +..++...+.|++++ +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666654 333433 45677777777664 466 6889999999999998874 22 122233333488775 4
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcE
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 585 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 585 (1101)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-= ..++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence 55444578999999999999999999999999888878777665533 368889999999
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCE-EEEEeCCCcEEEEEecCccccccccc-cccccccccCCCCCCccc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 663 (1101)
.+++++.++.+.+++... +.|++++|.-||+. +++|+..|.+-+||++.. +++...+ .|...
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~s------------- 290 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGS------------- 290 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCC-------------
Confidence 999999999999998653 36999999999875 556666799999999887 3333332 33222
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
.....+.+....+++++.|+.+++|-.+......+.-.. ..+|..+..+
T Consensus 291 ----------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~---R~GHs~Pp~~ 339 (910)
T KOG1539|consen 291 ----------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS---RGGHSAPPSC 339 (910)
T ss_pred ----------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcchheee---ccCCCCCchh
Confidence 112344556788899999999999977754433222211 2579999999
Q ss_pred EEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC----C
Q 001318 744 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 818 (1101)
Q Consensus 744 l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg----~ 818 (1101)
+.|. .+|..+++++.|++.+.+++..+.++..-... ........+...-...-.-.+|..+++...- .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~-------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL-------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc-------ccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9998 78999999999999999887655432211110 0001100000000000012346666655321 1
Q ss_pred EEEEEe--CCeEEEEECCCCce-eeEec-----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee---cC
Q 001318 819 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 887 (1101)
Q Consensus 819 ~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~ 887 (1101)
-++++. +...+.|+..+... ..++. .....+++++.++ .|++.+.|...|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 244444 57799999987554 23333 2346799999999 9999999999999999999999988888 58
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|.++|++++...-++.+++++.||.+++||........ ...-+ ..+..+..+-....+|+ ..|-.|+++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 99999999998888999999999999999998854211 11112 36788888888888888 6888999999
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+.+.+.++.+. +|.+.|++++|||||++|++++.|++|++||+.++.++..+. .. .-++++.|+| .
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999987 899999999999999999999999999999999999997765 11 2245799999 7
Q ss_pred CCEEEEEecC-CcEEEEeccC
Q 001318 1047 PNEFALGLSD-GGVHVFEPLE 1066 (1101)
Q Consensus 1047 ~~~l~s~~~d-g~v~vW~~~~ 1066 (1101)
|++|+|...| ..|++|-=..
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 8999999999 6899997533
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-41 Score=335.35 Aligned_cols=285 Identities=18% Similarity=0.272 Sum_probs=257.4
Q ss_pred cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 450 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
|-..+|..+.||.|++ .|+||+.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4578999999999999 89999999999999999999999999999999999999886567899999999999999999
Q ss_pred CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcC
Q 001318 530 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 609 (1101)
Q Consensus 530 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 609 (1101)
...+..+.+|...|..++|.|+| ++|++++.|.+-++||+.++..+....+|. ..|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG---------------------~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSG---------------------KFLGTASFDSTWRLWDLETKSELLLQEGHS--KGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCC---------------------ceeeecccccchhhcccccchhhHhhcccc--cccc
Confidence 88888888888766666655555 589999999999999999998887777654 4899
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccC
Q 001318 610 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 689 (1101)
Q Consensus 610 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1101)
+++|.+||.++++|+.|..-+|||+++| .++..+.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~-------------------------------------------- 342 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA-------------------------------------------- 342 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence 9999999999999999999999999988 2222111
Q ss_pred CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 690 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 690 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCC
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~ 848 (1101)
+|...|.+++|+|+|..+|+|+ |++++|||++....+.++.+|.+-
T Consensus 343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 1677788888888888999988 899999999988889999999999
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
|+.|.|+|..|.+|++++.|++++||...++.+++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-40 Score=331.28 Aligned_cols=284 Identities=19% Similarity=0.311 Sum_probs=257.1
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC--C
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 419 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 419 (1101)
++...+|..+.||+|++ +||||+-+|.++||+..+...+. ++.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45678999999999999 59999999999999999987666 48999999999999995 7
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
..||+|+.||+|++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||++++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876665 6899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ +||.+++||+.|..-++||++++.++..+.+|...|.++.|+|+|- .+++|
T Consensus 307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg 363 (459)
T KOG0272|consen 307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG 363 (459)
T ss_pred ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence 999985 5668999999999999999999999999999998888887777774 79999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
+.|++++|||++..+.+.++..|.. -|..|.|+| .|.+|++++.|+++++|...+. .+++.+.|
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLaG------------ 428 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLAG------------ 428 (459)
T ss_pred CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhcC------------
Confidence 9999999999999999999987755 699999999 8999999999999999998777 55555533
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
|.
T Consensus 429 ------------------------------------------------------------------------------He 430 (459)
T KOG0272|consen 429 ------------------------------------------------------------------------------HE 430 (459)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 77
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeee
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
+.|.++.+++|+..+++++-|.++++|.
T Consensus 431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 431 GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceEEEEeccCCceEEEeccCceeeecc
Confidence 8889999999999999999999999984
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.9e-39 Score=306.04 Aligned_cols=290 Identities=19% Similarity=0.299 Sum_probs=257.4
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+-+|..+|.++.|++|+++ ++++|.||.+.|||..|..+.+. +.-....|..+||+|.|+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCCC
Confidence 4469999999999999996 99999999999999998877764 344577999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCc---eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGD---EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~---~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++|+|+-|....||++.+.+ ..+...++.+|.+.+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.||.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence 99999999999999998652 2344456899999999999999776 89999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++.+.|+ +++.+++|+-|+..++||++.+...+.|.+|...|.++.|.|+|. -|+
T Consensus 188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa 245 (343)
T KOG0286|consen 188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA 245 (343)
T ss_pred cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence 9999998764 678999999999999999999999999999998888777777664 699
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
+|++|++.++||++..+.+..+.......+|++++||..|++|++|..|.++.+||.-.+ +....+
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------- 311 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------- 311 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence 999999999999999999999987777778999999999999999999999999998666 222222
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
.+|
T Consensus 312 -----------------------------------------------------------------------------~GH 314 (343)
T KOG0286|consen 312 -----------------------------------------------------------------------------AGH 314 (343)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 238
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
.++|+++..+|||..+++++-|..++||.
T Consensus 315 eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 89999999999999999999999999994
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.8e-37 Score=324.34 Aligned_cols=588 Identities=15% Similarity=0.177 Sum_probs=399.9
Q ss_pred ceeecccCCCCcEEEEEecCCC---eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~---~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
....+-+|...|+|+.|-|+.+ + +++|+.|+.|++|.+......... .+.+|... |+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~--~~ 105 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKE--CV 105 (764)
T ss_pred eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCccee--EE
Confidence 3444456999999999999887 5 899999999999999844333211 24555544 44
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeee--eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC--ceE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQ 489 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~ 489 (1101)
+++.......+.+.|+++.+||.+..+ +..... +..-.---.|+++.++.+..+++.|+.+..|.++.-.++ +.+
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 454444444444789999999995544 111111 221222345677778666557778888888888876544 345
Q ss_pred EEecCcccCeEEEeeeecCC-ccEEEEEecCCcEEEEecCCCCceeee------cC-CCCceeEE----EEccCCceEEe
Q 001318 490 YIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------EA-PGRWCTTM----AYSADGTRTYQ 557 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~------~~-~~~~v~~~----~~s~~~~~~~~ 557 (1101)
..+.||.+.|.+++|..... .-+|+|+|.|..||+|.+.-....... .. ....+..+ .+.-.-..++.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 68899999999999875544 468899999999999987543311100 00 00111110 00000012233
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeE--EEcCC-CCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLT--SIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
||.+ -+..+.|+|.+..|++++.|.++.+|...+.. -+. .+... +.........|+|+++.+++-+..|..++|
T Consensus 265 GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 265 GHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred Cccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4444 67778888888889999999999999877652 222 22211 122347789999999999999999999999
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
...+..
T Consensus 344 kt~d~~-------------------------------------------------------------------------- 349 (764)
T KOG1063|consen 344 KTKDKT-------------------------------------------------------------------------- 349 (764)
T ss_pred eccCcc--------------------------------------------------------------------------
Confidence 732220
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g 792 (1101)
.|... .-..+|...|+.++|+|.|.+|++.+.|.+-|+|--...+. -|.
T Consensus 350 --~w~~~------------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wH---- 398 (764)
T KOG1063|consen 350 --FWTQE------------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWH---- 398 (764)
T ss_pred --ceeec------------cccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------cee----
Confidence 01100 00045889999999999999999999999999875421000 011
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEECC-------------------------------------
Q 001318 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM------------------------------------- 834 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sd-g~i~vwd~~------------------------------------- 834 (1101)
.+ -..+.|...++|++|-+....+++|.| ..+|+|+..
T Consensus 399 -Ei---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 399 -EI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred -ee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 00 111237888888888876556666664 557888731
Q ss_pred ------CCc---------------------------------eeeEecCCCCCeEEEEEecCCCcEEEEEecc-----Ce
Q 001318 835 ------TFK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SS 870 (1101)
Q Consensus 835 ------~~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~ 870 (1101)
+|. .++.+.||..+|.+++.+| +++++|+++.. ..
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAv 553 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAV 553 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceE
Confidence 000 0112346777899999999 99999999854 47
Q ss_pred EEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 871 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
|++|+..+......+.+|+-.|+.++|||||++|++++.|+++.+|+........... .....|. .-|..+.|+|+
T Consensus 554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-a~~k~Ht---RIIWdcsW~pd 629 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-ACLKAHT---RIIWDCSWSPD 629 (764)
T ss_pred EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-ccccccc---eEEEEcccCcc
Confidence 9999999998889999999999999999999999999999999999986654433332 2223333 36788999999
Q ss_pred CcEEEE-EeCCeEEEEEcCCc--eeeeeccCCCCCCCeeEEEEcC-----CCCEEEEEEcCCeEEEEEcC-------Cce
Q 001318 951 QIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA-------NLK 1015 (1101)
Q Consensus 951 g~~la~-~~d~~v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~sp-----dg~~l~s~s~dg~v~vwd~~-------~~~ 1015 (1101)
++++++ +.|++|++|..... +.+..+....++..|+.++|.| .+..+++|-..|.|.+|... .+.
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 999999 69999999999888 6666555556789999999977 23378899999999999965 121
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCC-------C--CEEEEEecCCcEEEEecc
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQE-------P--NEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d-------~--~~l~s~~~dg~v~vW~~~ 1065 (1101)
.....+....++ |... |. .+.|.|.. . ..|++|++|.+++++++.
T Consensus 710 ~~~~~~l~~~~~--~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 710 FNLDTRLCATIG--PDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeccccccccC--hHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111122222 2222 44 68888641 1 236999999999999874
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=317.60 Aligned_cols=460 Identities=17% Similarity=0.259 Sum_probs=346.3
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+.+.|.|+.|+|...+ +.++-..|.|.|||.++...+.. +.-..-+|++..|-+--+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 48899999999999998 66677889999999999888764 33345689999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 501 (1101)
++|++|..|+||++.+++.+. .+.+|.+.|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999988766 6889999999999999999 8999999999999999865 677899999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
++|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|. ..++++|+.
T Consensus 146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaD 205 (794)
T KOG0276|consen 146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGAD 205 (794)
T ss_pred EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCC
Confidence 99988654 7899999999999999999999999999999999998877664 258999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
|.+|+|||..+..+++++.+|.+ .|..+.|+|.-..+++|+.||+++||+..+- ++...+.-
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~--------------- 267 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY--------------- 267 (794)
T ss_pred CceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhhc---------------
Confidence 99999999999999999997765 6999999999999999999999999987654 22221110
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
.-.++
T Consensus 268 ---------------------------------------------------------------------------gleRv 272 (794)
T KOG0276|consen 268 ---------------------------------------------------------------------------GLERV 272 (794)
T ss_pred ---------------------------------------------------------------------------CCceE
Confidence 12455
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.+++..+.+..++.|..+|.+.+= + ......+.+++.|+.+-
T Consensus 273 W~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIiw 314 (794)
T KOG0276|consen 273 WCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKIIW 314 (794)
T ss_pred EEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEEE
Confidence 566666666667777777766541 1 11122344445554443
Q ss_pred EEeC--CeEEEE------ECCCCceee----EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc
Q 001318 822 SASG--GKISLF------NMMTFKTMA----TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 822 ~~sd--g~i~vw------d~~~~~~~~----~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
+... -.+.+- ++..|+.+. .+-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.
T Consensus 315 a~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~f 387 (794)
T KOG0276|consen 315 AVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAF 387 (794)
T ss_pred EcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hccc
Confidence 3321 112222 222333221 1111112235678889 89888766 48888888643221 2244
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
+.-....|++|....++--.++.|+++ +..+..+... .-....+--.|.+|.+..++.+++||..+
T Consensus 388 G~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~ 453 (794)
T KOG0276|consen 388 GSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWES 453 (794)
T ss_pred ccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEccc
Confidence 566788999997788887778889988 4432211110 00112222346667778899999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
++.++.+.. ....+.|+.+|.+++.++.|.
T Consensus 454 ~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 454 GELVRRIEV-----TSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ceEEEEEee-----ccceeEEecCCCEEEEEecCc
Confidence 999988753 457889999999998887664
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3e-35 Score=319.11 Aligned_cols=547 Identities=13% Similarity=0.190 Sum_probs=407.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+.+.|+|++=+-+-- .+++ ...|.+|-- ++.+.. ++..|...|.-+. +=|.+|
T Consensus 74 ~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceE
Confidence 3778999988766543 2222 256666653 322221 3566776676655 448999
Q ss_pred EEEEcCCeEEEEEccCC-ceeee-eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 423 GVAYSRHIVQIYSYHGG-DEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~-~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+++..++.+.||+..++ ..... ...++...+.|+++.- |..---.++.|+.+|.+.+|++++++.+++++++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999884 22111 1112222233776654 332101488999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
++.- ++--+.++.|..+|+|.+++++..+.+..+....+.|++++|..||. ..+++|+
T Consensus 207 ~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------------p~las~~ 264 (910)
T KOG1539|consen 207 AIEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------------PLLASGR 264 (910)
T ss_pred Eecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------eeEEecc
Confidence 9874 44446899999999999999999999999988888899999998887 4678888
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc---cccccccccccccccccCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~ 657 (1101)
..|.+-+||++..+.+..+.. .+...+....|-|....+++.+.|+.+++|-..++ .+.++.-.||..+..
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~----- 338 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS----- 338 (910)
T ss_pred CCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch-----
Confidence 889999999999888777652 22446888999999999999999999999866543 244555566666533
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc-----
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL----- 732 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----- 732 (1101)
++..++ ..+..+.+++.|++.+.+++........+.....
T Consensus 339 ---~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 339 ---CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ---heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 222221 4567888999999999888764433222221000
Q ss_pred ------CccccccceEEEEEcCCC----ceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 733 ------PENLRATKISRLIFTNSG----NAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 733 ------~~~~~~~~i~~l~~s~~g----~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
...-.-.+|..+++.... ..++++. .+...+.|+++.... |+.....-..
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~ 444 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF 444 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence 011133466777776532 1244444 457788888753211 1111000000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEe---cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
......+++++.++.|++.+.|+ .|.|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|.+.+||..
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence 11456789999999999999998 899999999999888888 57999999999998 78899999999999999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
+..++..++- ...++++..+.....++.+..|-.|+++|+.+.+ ....+.||.. .|+.++|||||++|++
T Consensus 524 ~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 524 KKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISA 594 (910)
T ss_pred Ccceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence 9888877763 3457888888888899999999999999998843 4566777764 9999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-CeEEEEEc
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1011 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~ 1011 (1101)
+.|++|++||+.++.++..+.. ..+++++.|||+|.+||++..| .-|++|.=
T Consensus 595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 6899999999999999988764 6799999999999999999998 56999963
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-36 Score=308.61 Aligned_cols=354 Identities=19% Similarity=0.340 Sum_probs=279.1
Q ss_pred CCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCccee--EeeeeeeeecCCCCcccccccccCCCCCeE
Q 001318 334 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL--VLRNFKVWDLGACSMPLQAALVKDPGVSVN 411 (1101)
Q Consensus 334 ~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 411 (1101)
.+....+.++|+.+|.+++|+|-..-++++|+.|-+.++|++...... ....+| .|....- .-..-+..|+
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdVT 239 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDVT 239 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCcc
Confidence 356666778899999999999977767999999999999998751111 100000 0000000 0011235799
Q ss_pred EEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+++|+.+|.+||+|+.||.++||+...+. +. +|..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEe
Confidence 99999999999999999999999988753 22 5888999999999999999 899999999999999999999888
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
+.-|..+-..+.|-. .
T Consensus 314 f~~~s~~~lDVdW~~-~--------------------------------------------------------------- 329 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQS-N--------------------------------------------------------------- 329 (524)
T ss_pred eeeccCCccceEEec-C---------------------------------------------------------------
Confidence 887776644444421 1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
..|++.+.|+.|+++.+....++.++.+| ...|.++.|.|.|.+|+++++|++++||+.... .....+
T Consensus 330 --~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l------- 397 (524)
T KOG0273|consen 330 --DEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL------- 397 (524)
T ss_pred --ceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh-------
Confidence 12666666777777777777788888865 447999999999999999999999999997655 222222
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
++|...|..+.|+|.|.. .|++
T Consensus 398 ---~~Hskei~t~~wsp~g~v---------------------------------~~n~---------------------- 419 (524)
T KOG0273|consen 398 ---QAHSKEIYTIKWSPTGPV---------------------------------TSNP---------------------- 419 (524)
T ss_pred ---hhhccceeeEeecCCCCc---------------------------------cCCC----------------------
Confidence 237778888899988750 0111
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
..+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++.+...+- +
T Consensus 420 ---~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~ 494 (524)
T KOG0273|consen 420 ---NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-G 494 (524)
T ss_pred ---cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-C
Confidence 1334566666 99999999999999999999999999999999 9999999999999999999999999888754 5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 59999999999999999999999998874
No 23
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=304.09 Aligned_cols=531 Identities=19% Similarity=0.240 Sum_probs=379.3
Q ss_pred cccccCCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCC--------cEEE
Q 001318 301 SDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGL 372 (1101)
Q Consensus 301 ~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg--------~i~i 372 (1101)
+.|+..+++...|.|+-..+ .....++|++.|.|++.+||.-. +++|...| .|+|
T Consensus 76 tgE~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 76 TGELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred CccEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeee
Confidence 44444555555555555442 34456789999999999999874 88887666 4999
Q ss_pred EeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCCeEEEE--EcCCeEEEEEccCCceeeeeeee
Q 001318 373 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEI 448 (1101)
Q Consensus 373 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~--~~d~~i~iwd~~~~~~~~~~~~l 448 (1101)
||..+-..+. ++..-...|.|++||+ .|.+|+.. +.+..+.+||+..+..... .
T Consensus 139 Wdsv~L~TL~-------------------V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---v 196 (626)
T KOG2106|consen 139 WDSVTLSTLH-------------------VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---V 196 (626)
T ss_pred cccccceeee-------------------eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---c
Confidence 9988877665 3556677999999999 45566554 4567799999998776653 3
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE---ecCc-ccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~h-~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
......|..+.|.|.+.. ++++++ .+.+.+|+.+.+...++ |+.+ ...|.|++|.++. -+++|..+|.|.+
T Consensus 197 k~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~I 271 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILI 271 (626)
T ss_pred eeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEE
Confidence 345678999999999987 566766 57899999998876653 4333 3568899986544 3899999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
|+..+.........|.+.|.+++...+|. |++|+.|+.|..|| ..-+.+...+....
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gt----------------------llSGgKDRki~~Wd-~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGT----------------------LLSGGKDRKIILWD-DNYRKLRETELPEQ 328 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCcc----------------------EeecCccceEEecc-ccccccccccCchh
Confidence 99977666655558888888888888886 88899999999999 45555555555555
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.+.++.++=...+ |++|+..+.|..=.++++..+..
T Consensus 329 ~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v------------------------------------------ 364 (626)
T KOG2106|consen 329 FGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV------------------------------------------ 364 (626)
T ss_pred cCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE------------------------------------------
Confidence 5667666543333 77777666655444433311100
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
.+|......++..|+...+++++.|+.+++
T Consensus 365 --------------------------------------------------~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 365 --------------------------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred --------------------------------------------------EecccceeeEEcCCChhheeeccCcceEEE
Confidence 236667788999999999999999999999
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
|+-.. -+|... ...++.++.|+|.| .+|.|. .|...+.|.++...+. +.
T Consensus 395 W~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~ 444 (626)
T KOG2106|consen 395 WNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IH 444 (626)
T ss_pred ccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EE
Confidence 97211 022211 46678999999999 899998 8999999999855544 43
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
....++++++|+| +|.+||+|+.|+.|+||-+... ...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.....
T Consensus 445 ~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 445 TDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred ecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC
Confidence 3478899999999 9999999999999999998753 322222 334489999999999999999999999999933221
Q ss_pred ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 922 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
. .. .++..+.|....-.| | .......|...|..++-+.+.++|++|.
T Consensus 524 ~--~~-------------ts~kDvkW~t~~c~l---------------G---F~v~g~s~~t~i~a~~rs~~~~~lA~gd 570 (626)
T KOG2106|consen 524 K--QI-------------TSVKDVKWATYTCTL---------------G---FEVFGGSDGTDINAVARSHCEKLLASGD 570 (626)
T ss_pred c--cc-------------ceecceeeeeeEEEE---------------E---EEEecccCCchHHHhhhhhhhhhhhccc
Confidence 1 00 012233332111100 0 0001135577888889999999999999
Q ss_pred cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1002 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1002 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+.|+|++|...--+..+.+. .-.+|.+. +. .++|.-.| ..+++.+.|.+|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccce----eeccccce-eE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 99999999987655443222 22234344 55 89999866 55666669999999997
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6e-37 Score=291.26 Aligned_cols=257 Identities=20% Similarity=0.294 Sum_probs=219.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+-+|++.|+.++..+.+..++++++.|.++.+|++.......-.. ...+.||...|..++.++||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~--------------~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP--------------VRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce--------------eeeeeccceEecceEEccCCc
Confidence 335999999999999988899999999999999997653332111 225889999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc--ccC
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAP 498 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--~~~ 498 (1101)
+.++++.|+++++||+.+++..+ .|.||...|.+++|++|++ .+++|+.|++|++|++.. .+..++..+ .+.
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREW 150 (315)
T ss_pred eEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCCcCc
Confidence 99999999999999999997655 5889999999999999999 599999999999999654 445555433 789
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.|++|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||. ..++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcas 209 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCAS 209 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEec
Confidence 9999999988778999999999999999999888888888888777777777765 6888
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
|+.||.+.+||++.++.+..+.+ ...|.+++|+|+...|+.+.. ..|+|||++++ ..+..
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~ 269 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE 269 (315)
T ss_pred CCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence 99999999999999999888864 346999999999887777764 56999999887 44433
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=287.40 Aligned_cols=287 Identities=16% Similarity=0.282 Sum_probs=245.1
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...+|+||.+.|.++.|++|.+ .+++++.||.+.|||.-+...++.+.-....|..++|+ |.|+++++|+.|+...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s--PSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS--PSGNFVACGGLDNKCS 122 (343)
T ss_pred eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC--CCCCeEEecCcCceeE
Confidence 3357999999999999999999 79999999999999999999999888888899988985 4558999999999999
Q ss_pred EEecCCCC------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 001318 524 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT 597 (1101)
Q Consensus 524 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 597 (1101)
+|++.+.+ ....+.+|.+.+.++.|..|+. |++++.|.+..+||+++++.+.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence 99998652 2345677777777777777654 9999999999999999999999
Q ss_pred EEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccc
Q 001318 598 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 676 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1101)
.+.+|. ..|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+
T Consensus 181 ~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g------------------------------ 227 (343)
T KOG0286|consen 181 VFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG------------------------------ 227 (343)
T ss_pred EecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc------------------------------
Confidence 998664 4799999999 9999999999999999999887 44433322
Q ss_pred ccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEee
Q 001318 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 756 (1101)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 756 (1101)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC
Q 001318 757 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 835 (1101)
Q Consensus 757 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~ 835 (1101)
|+..|.+++|.|+|.-+++|+ |++.++||++.
T Consensus 228 -----------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 228 -----------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred -----------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 555666666666666777777 57777777777
Q ss_pred CceeeEecC--CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCce
Q 001318 836 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 913 (1101)
Q Consensus 836 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v 913 (1101)
.+.+..+.. ...+|++++||. .|++|.+|..|.++.|||.-.++.+..|.+|.++|.++..+|||.-|+||+.|.++
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 666666653 245799999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 001318 914 CVWS 917 (1101)
Q Consensus 914 ~iwd 917 (1101)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-36 Score=284.37 Aligned_cols=296 Identities=16% Similarity=0.235 Sum_probs=249.4
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |.+.|..++. +.+ |+..|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 456788888999999998543 2234443332 444 9999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC--ccc
Q 001318 814 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--HSK 890 (1101)
Q Consensus 814 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~--h~~ 890 (1101)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++.. .+..++.. |.+
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE 149 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcC
Confidence 99999999999 99999999999999999999999999999999 999999999999999999874 44444433 378
Q ss_pred CeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEc
Q 001318 891 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 891 ~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~ 967 (1101)
-|+++.|+|+ ..+|+++|.|++|++||+++-+ ....+.||. +.+..+++||||..+++ +.|+.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 7899999999999999999843 345555665 48999999999999999 69999999999
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~ 1047 (1101)
+.++.+..+ +|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+++....+ +...+.+..++++|++ ||
T Consensus 222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999997776 568899999999997666655 56679999999999998887554444 2234457788999999 89
Q ss_pred CEEEEEecCCcEEEEeccC
Q 001318 1048 NEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1048 ~~l~s~~~dg~v~vW~~~~ 1066 (1101)
..|.+|-.|+.|++|.+..
T Consensus 296 ~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cEEEeeecCCcEEEEEeec
Confidence 9999999999999999853
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=303.84 Aligned_cols=470 Identities=17% Similarity=0.221 Sum_probs=345.7
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|...|.++.|+|...+++++-.+|.|.|||.++...++. +.-..-+|.+..|-+--+ .+++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 556899999999999999999999999999999999887774 555678999999998777 799999999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
..+++.++.|.+|.+.|.+++.+|.. .+++++|.|-+|++||++.. .+.+++.+|.+.|..++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998765 79999999999999999875 56778999999999999999876
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+.+++++-|++|++|.+....+..++.+|. ..|+|+.|-+ |..+|++|++|.+++|||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 679999999999999999999999998664 4799999988 4579999999999999999887 7
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 7777765
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
|...|..+.|+|.-..+++++.||+++||+-.+-. +... +
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~----------------------lE~t-L 265 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK----------------------LEKT-L 265 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCccee----------------------hhhh-h
Confidence 55667788899999999999999999999753211 1000 1
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE----EeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI----GMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las----g~~dg~v~vwd 875 (1101)
.- .-..+.|++-.+.+..+++|.|....+..+-..++...+.. ...+.|+. .+.+..+ .+.++ +
T Consensus 266 n~--gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~----~gKIiwa~-~~ei~~~~~ks~~~~~-----e 333 (794)
T KOG0276|consen 266 NY--GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDS----NGKIIWAV-HSEIQAVNLKSVGAQK-----E 333 (794)
T ss_pred hc--CCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecC----CccEEEEc-CceeeeeeceeccCcc-----c
Confidence 11 35678999999999999999976555555544443333321 11222332 1111110 11111 2
Q ss_pred eecceEee----eecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 876 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 876 ~~~~~~~~----~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
+..|+.+. .+-.-.---..++-||+|++++.++ ||.-.||..-..+ ... .+.-....|++|.
T Consensus 334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~------fG~~~eFvw~~ds 399 (794)
T KOG0276|consen 334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKA------FGSGLEFVWAADS 399 (794)
T ss_pred ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hcc------cccceeEEEcCCC
Confidence 33333221 1100000112467789998887766 7888888643311 011 1345778999997
Q ss_pred cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 952 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 952 ~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
...++ -+++.|+++ ++.+..+.+.+..+. ..+ -.|.+|. ...++.+++||.++++++.++.
T Consensus 400 ne~avRes~~~vki~--knfke~ksi~~~~~~-----e~i-~gg~Llg-~~ss~~~~fydW~~~~lVrrI~--------- 461 (794)
T KOG0276|consen 400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSA-----EGI-FGGPLLG-VRSSDFLCFYDWESGELVRRIE--------- 461 (794)
T ss_pred CeEEEEecCCceEEE--ecceeccccccccce-----eee-cCCceEE-EEeCCeEEEEEcccceEEEEEe---------
Confidence 77777 678999998 777777777643321 111 1344444 4457789999999999999998
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+.+-.+.|+. +|.+++.++ |-+.++..+.
T Consensus 462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n 490 (794)
T KOG0276|consen 462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFN 490 (794)
T ss_pred ----eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence 3344688886 566666666 5556666653
No 28
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-34 Score=308.57 Aligned_cols=546 Identities=17% Similarity=0.242 Sum_probs=382.8
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC---eEEEEEc
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS 427 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~ 427 (1101)
..|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3445655 355554 4799999987763333 4899999999999999888 8999999
Q ss_pred CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCc--eEEEecCcccCeEEEe-
Q 001318 428 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC- 503 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~- 503 (1101)
|+.|++|.++.. .+.....+.+|...+.|+. ..-. +.++ ..|+++.+||.+..+ +...+.-..+.+..+|
T Consensus 78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv~--a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCVV--ARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred CCcEEEEEEeeh-heEEEEeecCcceeEEEEE--eeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 999999999943 3455667888766665554 2222 3333 789999999986555 3333332333343344
Q ss_pred -eeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 504 -PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 504 -~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
+.+.++.-+++.|+.+..|.++.-... .....+.+|..+|.+++|...+. +.-+++++|
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S 213 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS 213 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence 333333334556666777777755432 33457889999999999977664 224688899
Q ss_pred CCCcEEEEECCCCc---------------------eeEEEc--------CCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 581 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
.|..||||.+.-+. ....+. ..+|...|+++.|+|.+..|++++.|.++.+
T Consensus 214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 99999999874322 010111 1245668899999999988999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
|...+..-....
T Consensus 294 W~pd~~tGiWv~-------------------------------------------------------------------- 305 (764)
T KOG1063|consen 294 WKPDENTGIWVD-------------------------------------------------------------------- 305 (764)
T ss_pred EecCCccceEEE--------------------------------------------------------------------
Confidence 976543100000
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+|+=.+ .+....-.+..|+|+++.+++-+..|..++|.... ...|....
T Consensus 306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~~ 355 (764)
T KOG1063|consen 306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQEP 355 (764)
T ss_pred EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeecc
Confidence 0000000 01334566788999999999999999999997211 12233221
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC----CceeeEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
. + .+|...|+.++|+|.|++|++.+ |-+-|+|-.-. ...+..-+-|...++|++|-+ ....+++|.
T Consensus 356 ~------i--SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA 426 (764)
T KOG1063|consen 356 V------I--SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA 426 (764)
T ss_pred c------c--ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence 1 2 35999999999999999999999 99999987641 122233345777899999998 677888888
Q ss_pred ccCeEEEEEeec-------------------------------------------ce-----------------------
Q 001318 867 DDSSIQIYNVRV-------------------------------------------DE----------------------- 880 (1101)
Q Consensus 867 ~dg~v~vwd~~~-------------------------------------------~~----------------------- 880 (1101)
+...+|+|+... |.
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 889999997410 00
Q ss_pred ----------EeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEE
Q 001318 881 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 945 (1101)
Q Consensus 881 ----------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 945 (1101)
.+.++.||.-.|.+++.+|+|+++||++... .|++|+..+..+ .+.+.+|.- .|+.+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l 578 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL 578 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence 1234568889999999999999999998654 489999988654 234556654 89999
Q ss_pred EEcCCCcEEEE-EeCCeEEEEEcCCceeeee--ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc--eeeeec
Q 001318 946 QFHQDQIHFLV-VHETQLAIFETTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCRI 1020 (1101)
Q Consensus 946 ~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~--~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~--~~~~~~ 1020 (1101)
+|||||++|++ +.|+++.+|.......... -....|..-|.+..|+||+.+++|+|.|.+|+||..... +.+.++
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 99999999999 8999999999854322111 114579999999999999999999999999999999888 444443
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCC----EEEEEecCCcEEEEecc
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~----~l~s~~~dg~v~vW~~~ 1065 (1101)
. .++. +..|. +++|.|-+.. .++.|-..|.|.+|+..
T Consensus 659 a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 A---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred c---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 2 1222 22255 6777765544 78999999999999976
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=290.81 Aligned_cols=339 Identities=17% Similarity=0.251 Sum_probs=282.4
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.|..|++.|.+++.+|+.+++|||+.|....||++.+|.... .+.+|.+.|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 488999999999999999999999999999999999998544 6889999999999999999 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
+..++.....+......+.=++|++. +++|+.|+.||.+-+|.+.+......+.+|+.++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 99999999888766667777899874 47999999999999999998877888888888888777777765
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+++-+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999999975553 45788999999999999999999988876666 221
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
....+. .+
T Consensus 269 ~~~n~~-~~----------------------------------------------------------------------- 276 (399)
T KOG0296|consen 269 NCNNGT-VP----------------------------------------------------------------------- 276 (399)
T ss_pred EecCCC-Cc-----------------------------------------------------------------------
Confidence 111100 00
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.+. ..+..
T Consensus 277 ----~l~------~~~e~-------------------------------------------------------------- 284 (399)
T KOG0296|consen 277 ----ELK------PSQEE-------------------------------------------------------------- 284 (399)
T ss_pred ----ccc------ccchh--------------------------------------------------------------
Confidence 000 00000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
....|.++.++..-.+.|+|+ ||+|.|||+...+..+.+ .|...|+.+.|-+ ..+|++++.||.|+.||.++|.
T Consensus 285 --~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 285 --LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred --hhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 122344455555666788888 999999999886655554 4888899999987 5789999999999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
++.++.||...|.+++++|+.++++|+|.|++.+|+++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999874
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-34 Score=310.78 Aligned_cols=492 Identities=17% Similarity=0.265 Sum_probs=345.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....|..++|+|...+ +.++-..|.|.+||..-+..+.. +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 4567899999999997 78888899999999999888774 889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|++|-.|+||++++.+++- ++.||-+.|..+.|++.-. .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999877654 7999999999999999888 799999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCC-CCceeE------EEEccCC--ceEEeccccCceeEEEEcCCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
|+|.. ..++|+|.|.+||+||+...+....-.+. ...... +--.+|. +.++.||. ..++-++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence 98876 58999999999999999754333222110 000000 0000111 14455554 4788899999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
.+++|++|+.|++|.+...+.-..=...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999977664443334456678999999999999999999999999999765 33333321
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
...+-..++.+|..+ |++++.|+-+.+|.+.. +.+ +.+++
T Consensus 291 --endRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erp--a~~v~ 330 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERP--AYAVN 330 (1202)
T ss_pred --cCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCc--eEEEc
Confidence 234556778888888 55566666666776521 222 23333
Q ss_pred cCCCEEEEEeCCeEEEEECCCCcee--eEecCC---CCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceEeee---e
Q 001318 815 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSK---L 885 (1101)
Q Consensus 815 ~dg~~la~~sdg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~---l 885 (1101)
+..|...-|..|+-+|+.+.+.. ..++.. ..+..++.|+|..+-.|++.. ..|..-++.+.+...... -
T Consensus 331 --~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 331 --GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred --CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 33444445889999999875433 334433 357889999995555555433 334555555543211000 0
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 965 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vw 965 (1101)
.-......++-.+.+ ++.+---.+..+.+-++..... +.+... .....+.+..+|.+|.. ....|.+|
T Consensus 409 ~~k~tG~~a~fvarN-rfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lf 476 (1202)
T KOG0292|consen 409 VKKGTGEGALFVARN-RFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLF 476 (1202)
T ss_pred hhcCCCCceEEEEec-ceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEE
Confidence 001112233333222 2333222355566666655221 111111 13455666666765554 55679999
Q ss_pred EcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 966 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 966 d~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
|+...+.+..+. ...+.-+.||+|..+++.-+ -.+|.|.+.
T Consensus 477 dvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k 517 (1202)
T KOG0292|consen 477 DVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIADK 517 (1202)
T ss_pred EeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence 999998888876 56899999999998876554 345666653
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=292.85 Aligned_cols=273 Identities=17% Similarity=0.280 Sum_probs=238.2
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
..++.+|...|+.+-|+|+-. ++++++.|++|++||..+++... .+.||.+.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 344667999999999999988 69999999999999999998865 4899999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
.|++||+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++++|.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999873 333446789999999999999998 899999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|..+.. ..||.++++++.|.+|++|-+.++++...+..|...|.+++|.|.....-.....+. ...+.++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~ 308 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG 308 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence 9998885 678899999999999999999999999999999999999999887641100000000 01346899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
+++.|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.+. ++.+.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ 373 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE 373 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence 999999999999999999999997765 8999999999999999999999999999988 5555443
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.3e-34 Score=280.74 Aligned_cols=333 Identities=16% Similarity=0.201 Sum_probs=264.9
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.....|++.|.+++.+|+.+ ++|||+.|..-.||+..+++... .+.+|++.|+|+.||
T Consensus 56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEc
Confidence 3445567999999999999776 69999999999999999998665 389999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
.||.+||||+.+|.|+||+..++..... +......|.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.||.
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~~~~~---~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGGEQWK---LDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCceEEE---eecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 9999999999999999999999886653 445567888999999888 89999999999999999988889999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
.++++=.|. ++|+.++++..||+|++|+..++.+...+.... .....++.++..+..+
T Consensus 191 ~~ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 191 SPCTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTL 248 (399)
T ss_pred CCccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCcccccccccee
Confidence 999999985 558999999999999999999987776654322 1234445555566678
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCC------CCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDAD------GGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
+.|+.++.+++-+..+|+.+...... .+. ..|-++.++..-.+.|+|+-||+|.|||.... .+ |
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~-R----- 321 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TL-R----- 321 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hh-h-----
Confidence 88899999999988888877666521 011 11222333334445555555666666654322 00 0
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccc
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 727 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 727 (1101)
T Consensus 322 -------------------------------------------------------------------------------- 321 (399)
T KOG0296|consen 322 -------------------------------------------------------------------------------- 321 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCC
Q 001318 728 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~ 807 (1101)
. . -.|...
T Consensus 322 --------------------------------------------------------------------~--~--c~he~~ 329 (399)
T KOG0296|consen 322 --------------------------------------------------------------------H--I--CEHEDG 329 (399)
T ss_pred --------------------------------------------------------------------e--e--ccCCCc
Confidence 0 0 016677
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
|..+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 88888877 56777776 99999999999999999999999999999999 99999999999999999864
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.9e-34 Score=265.00 Aligned_cols=295 Identities=14% Similarity=0.265 Sum_probs=240.6
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCcee
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT 544 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~ 544 (1101)
.+|+|+|.|.+|++|...+|.|.+++....+.|+.+.+. +++..|++++. ..||+||+++... +.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEc--CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 389999999999999999999999999778899999974 55567777764 7899999998654 556666666555
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
.+.|..+ |+++++|++||+++|||++...+.+.++.. .+|+++..+|+...|++|.
T Consensus 88 aVgF~~d---------------------grWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 88 AVGFQCD---------------------GRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD 143 (311)
T ss_pred EEEEeec---------------------CeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence 5555544 468999999999999999997766666533 5799999999999999999
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.+|.|++||+.+. .+...+
T Consensus 144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------ 162 (311)
T KOG0315|consen 144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------ 162 (311)
T ss_pred CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence 9999999999765 221111
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
+|+ ....|.++++.|||.+++++...|..++|++......
T Consensus 163 ---------------------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~----------- 202 (311)
T KOG0315|consen 163 ---------------------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA----------- 202 (311)
T ss_pred ---------------------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence 111 3467899999999999999999999999998542211
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC-ceeeEecCCCCCeEEEEEecCCCcEE
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
+.......++ .|+..+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+..++||. |++||
T Consensus 203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl 273 (311)
T KOG0315|consen 203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL 273 (311)
T ss_pred ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence 1111111122 3899999999999999999998 999999999987 55677899999999999999 99999
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
++|+.|+.+++||+..++.++...+|.....|++..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999988888764
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-35 Score=319.41 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=231.6
Q ss_pred CCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---eeeee---------eecCCCCccc
Q 001318 332 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKV---------WDLGACSMPL 398 (1101)
Q Consensus 332 ~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~---------~~~~~~~~~~ 398 (1101)
..++..+..++. -...++|+.||+|++ ++|.|-.|-.|++|.+...+.... ..+.- -++.......
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 334555566665 457899999999999 699999999999999985431110 00000 1112222233
Q ss_pred ccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 399 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 399 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
....+.||.++|+.+.|+||.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- +++|+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence 344689999999999999999999999999999999999987665 5789999999999999998 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++|......+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++..+..|.+|...|.+++|+|+|
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G------ 589 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG------ 589 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC------
Confidence 999999999999999999999999997655 799999999999999999999888888887777777666666
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+|++|+.||.|.+||+.+++.+..+.+| ...|.++.|+.+|..||+|+.|++|++||+...
T Consensus 590 ---------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 ---------------RYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ---------------ceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 48999999999999999999999999877 557999999999999999999999999998754
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=275.16 Aligned_cols=296 Identities=20% Similarity=0.327 Sum_probs=242.2
Q ss_pred cccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 400 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 400 ~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... ....++++|++.|..+.|.+|+. .+++++.|++|+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVR 115 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEE
Confidence 34688999999999999999999999999999999976532 34446889999999999999999 799999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
.||+++|++++.+++|...|++++.. .-+-.++.+++.||++++||++..+...++... .
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-y------------------ 175 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-Y------------------ 175 (338)
T ss_pred EEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccc-e------------------
Confidence 99999999999999999999998832 334467888999999999999987766655322 2
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
++..+.|..++..+++|+-|+.|++||++.+.....+.+|.. .|+.+..+++|.++.+.+.|.++++||++.-..
T Consensus 176 ---qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 176 ---QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred ---eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 344555555566799999999999999999999999987755 799999999999999999999999999853210
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.. ..+.++.
T Consensus 251 ~~---------------------------------------------------------------------R~v~if~-- 259 (338)
T KOG0265|consen 251 SQ---------------------------------------------------------------------RCVKIFQ-- 259 (338)
T ss_pred CC---------------------------------------------------------------------ceEEEee--
Confidence 00 0011100
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
+..
T Consensus 260 -------------------------------------g~~---------------------------------------- 262 (338)
T KOG0265|consen 260 -------------------------------------GHI---------------------------------------- 262 (338)
T ss_pred -------------------------------------cch----------------------------------------
Confidence 000
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.+.......++|+|+++.+..|+ |..+++||..+...+..+.||.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus 263 --hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 --HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred --hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 00122234578899999999998 89999999999999999999999999999999 889999999999998743
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=286.99 Aligned_cols=301 Identities=22% Similarity=0.325 Sum_probs=266.2
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|..+|+.+-|.|+-...++++.|++|++||..+++..+ .++||.+.|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999998755 7999999999999999999 89999999999999
Q ss_pred eCCC-CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 482 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 482 d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
|..+ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-++.++.+|..+|..+..+.||.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt------- 248 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT------- 248 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence 9887 67888899999999999997765 7999999999999999999999999999999888888777775
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+++++.|.+|++|-+.++++...+..|.+ .|.+++|.|...+ ....
T Consensus 249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~i~--------------- 295 (406)
T KOG0295|consen 249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PSIS--------------- 295 (406)
T ss_pred --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cchh---------------
Confidence 789999999999999999988888887766 6788888775321 0000
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
T Consensus 296 -------------------------------------------------------------------------------- 295 (406)
T KOG0295|consen 296 -------------------------------------------------------------------------------- 295 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
-+++
T Consensus 296 --------------------------------~at~-------------------------------------------- 299 (406)
T KOG0295|consen 296 --------------------------------EATG-------------------------------------------- 299 (406)
T ss_pred --------------------------------hccC--------------------------------------------
Confidence 0000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
... .++++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|+||+++.+|+++++||++++
T Consensus 300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 000 345778888 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++...+..|..-|+++.|..+-.+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999963
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.4e-34 Score=264.84 Aligned_cols=281 Identities=14% Similarity=0.278 Sum_probs=231.4
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
-+|++++.|.+||+|...++.+..++......|..+.+.|+++ .|++++ ...||+||+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---------------------~LAaa~-~qhvRlyD~ 68 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---------------------DLAAAG-NQHVRLYDL 68 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---------------------hhhhcc-CCeeEEEEc
Confidence 5799999999999999999999988888888787777777765 455554 568999999
Q ss_pred CCCce--eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchh
Q 001318 591 DSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAA 668 (1101)
Q Consensus 591 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1101)
.++.+ +.++.++ ...|.++.|..+|+++++|++||+++|||++.. .+.+.++
T Consensus 69 ~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~----------------------- 122 (311)
T KOG0315|consen 69 NSNNPNPVATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ----------------------- 122 (311)
T ss_pred cCCCCCceeEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccchhcc-----------------------
Confidence 98765 6667655 446999999999999999999999999999874 3222221
Q ss_pred hhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcC
Q 001318 669 AAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN 748 (1101)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 748 (1101)
+..+|+++..+|
T Consensus 123 --------------------------------------------------------------------~~spVn~vvlhp 134 (311)
T KOG0315|consen 123 --------------------------------------------------------------------HNSPVNTVVLHP 134 (311)
T ss_pred --------------------------------------------------------------------CCCCcceEEecC
Confidence 557899999999
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 827 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~ 827 (1101)
+...|+++..+|.|++||+..... +..+ .+. ....|.++.+.|||++++.+. .|.
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c------------------~~~l----iPe--~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSC------------------THEL----IPE--DDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCcc------------------cccc----CCC--CCcceeeEEEcCCCcEEEEecCCcc
Confidence 999999999999999999843211 1111 111 456799999999999999998 699
Q ss_pred EEEEECCCC------ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccCeeEEEEcCC
Q 001318 828 ISLFNMMTF------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 828 i~vwd~~~~------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d 900 (1101)
.++|++-+. +.+..++.|.+.+..+.+|| |+++||+++.|.+++||+.++. +.-..+++|..-++..+||.|
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccC
Confidence 999998653 34556888999999999999 9999999999999999999887 666788999999999999999
Q ss_pred CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCC
Q 001318 901 LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 901 g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
|+||+||+.|+++++|++..++. .....+|..
T Consensus 270 g~YlvTassd~~~rlW~~~~~k~-----v~qy~gh~K 301 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAGKE-----VRQYQGHHK 301 (311)
T ss_pred ccEEEecCCCCceeecccccCce-----eeecCCccc
Confidence 99999999999999999998763 344455543
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-32 Score=294.22 Aligned_cols=546 Identities=15% Similarity=0.210 Sum_probs=363.5
Q ss_pred CCcccccccccCCCCCCCcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeee
Q 001318 306 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 385 (1101)
Q Consensus 306 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~ 385 (1101)
.|.+.|.+.--..+ .+.+|.+. +..-+.+..+|.++|..++|+|++. |+++|+.|..|+||++.+.+++.
T Consensus 18 HP~rPwILtslHsG-----~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclf--- 87 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSG-----VIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLF--- 87 (1202)
T ss_pred CCCCCEEEEeecCc-----eeeeehhh-hhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecccceehh---
Confidence 45556766555545 56666653 2233444556999999999999999 69999999999999999999887
Q ss_pred eeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC
Q 001318 386 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK 465 (1101)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~ 465 (1101)
.+.||-+.|..+.|++.-.+++++|+|.+|+||++.+++++. .+.||...|.|..|.|...
T Consensus 88 ----------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 88 ----------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred ----------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccc
Confidence 489999999999999999999999999999999999999887 7999999999999999888
Q ss_pred eEEEEEecCCCcEEEEeCCC--------C-------------------c--eEEEecCcccCeEEEeeeecCCccEEEEE
Q 001318 466 QLCVITCGDDKTIKVWDATN--------G-------------------A--KQYIFEGHEAPVYSVCPHHKENIQFIFST 516 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~--------~-------------------~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~ 516 (1101)
+++|+|-|.+|+|||+.. + . ..+.+.||...|+-++|++.- .+++||
T Consensus 149 --lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--pliVSG 224 (1202)
T KOG0292|consen 149 --LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--PLIVSG 224 (1202)
T ss_pred --eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--ceEEec
Confidence 799999999999999852 1 0 124678999999999998755 699999
Q ss_pred ecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001318 517 ALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1101)
+.|..|++|.+...+. .-+..+|.. .+.++-|+|..+.+++.|+|++|++||+...+
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~n---------------------nVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYN---------------------NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccC---------------------CcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9999999998875332 223344444 44555566666789999999999999999999
Q ss_pred eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhc
Q 001318 595 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 674 (1101)
Q Consensus 595 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1101)
.++++..... ....++-+|..+++++|.+ +-+.+|.++.. ++...+
T Consensus 284 ~v~tfrrend--RFW~laahP~lNLfAAgHD-sGm~VFkleRE-rpa~~v------------------------------ 329 (1202)
T KOG0292|consen 284 SVQTFRREND--RFWILAAHPELNLFAAGHD-SGMIVFKLERE-RPAYAV------------------------------ 329 (1202)
T ss_pred ceeeeeccCC--eEEEEEecCCcceeeeecC-CceEEEEEccc-CceEEE------------------------------
Confidence 9999975544 6788999999999888764 55566766533 111111
Q ss_pred ccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEE
Q 001318 675 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL 754 (1101)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 754 (1101)
.+..+...- |..|+.+|+.+.+.... ..+..+.. ...+..++.++|....++
T Consensus 330 -------------------------~~n~LfYvk-d~~i~~~d~~t~~d~~v-~~lr~~g~-~~~~~~smsYNpae~~vl 381 (1202)
T KOG0292|consen 330 -------------------------NGNGLFYVK-DRFIRSYDLRTQKDTAV-ASLRRPGT-LWQPPRSLSYNPAENAVL 381 (1202)
T ss_pred -------------------------cCCEEEEEc-cceEEeeecccccccee-EeccCCCc-ccCCcceeeeccccCeEE
Confidence 122222222 67888888887333222 22221111 236778999999877666
Q ss_pred eeec--CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001318 755 ALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 832 (1101)
Q Consensus 755 ~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd 832 (1101)
.+++ ++...++.+..... +.. .+... . ......++-+..++-.+..-++..+.+=+
T Consensus 382 ics~~~n~~y~L~~ipk~~~---~~~------------~~~~~---~----k~tG~~a~fvarNrfavl~k~~~~v~ik~ 439 (1202)
T KOG0292|consen 382 ICSNLDNGEYELVQIPKDSD---GVS------------DGKDV---K----KGTGEGALFVARNRFAVLDKSNEQVVIKN 439 (1202)
T ss_pred EEeccCCCeEEEEEecCccc---ccC------------Cchhh---h----cCCCCceEEEEecceEEEEecCcceEEec
Confidence 5543 46666665532210 000 00000 0 11222233232222111112244555555
Q ss_pred CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc
Q 001318 833 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 833 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~ 912 (1101)
+.+ +..+.+... ..+..+-+.. .|.+|+. ....|.+||++..+.+..+. ...|.-+.||+|+.+++--+. .+
T Consensus 440 l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~K-h~ 511 (1202)
T KOG0292|consen 440 LKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSK-HT 511 (1202)
T ss_pred ccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhccc-ce
Confidence 543 233333321 2344555555 6666654 35679999999888877775 467899999999998887764 46
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc--eeeeeccCCCCCCCeeEEEE
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL--ECVKQWVPRESSAPITHATF 990 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~ 990 (1101)
|.|.+.+-. .+...... -.|.+-+|..+|-++.+..+- |+ |-+.+| -.++++ ..+|+-.+.
T Consensus 512 i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nH-ik-Yal~~GD~GIikTL-----d~~iyitkv 574 (1202)
T KOG0292|consen 512 ITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNH-IK-YALENGDSGIIKTL-----DKPIYITKV 574 (1202)
T ss_pred EEEEecchh------heecchhe----eEeeeceeccCceEEEEehhh-hh-hhhccCCcceEEec-----ccceEEEEe
Confidence 888875431 11111111 256777888888777764321 11 111211 122332 223443443
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
.|+.+++-..|+.+.+.+++.-+.
T Consensus 575 --~gn~V~cl~rd~~~~~~~IDptEy 598 (1202)
T KOG0292|consen 575 --KGNKVFCLNRDGEIECLTIDPTEY 598 (1202)
T ss_pred --eCCEEEEEecCCCeEEEeechHHH
Confidence 477888888888888888875443
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-34 Score=290.10 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=225.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+..|++++|+.+|. +||+|+.||.++||+...+ .+. .+..|.++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~-------------------tl~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIS-------------------TLGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence 347899999999999 5999999999999997654 333 4889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+++.|+++.+||..+|.... .+.-|..+-..+.|-.+.. +++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987655 3455788878899987775 89999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC-CCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d 582 (1101)
|. +.|.+|++++.|+++++|..........+..|...|+.+.|+|.|. +..+| .+..+++++.|
T Consensus 367 ~n--~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 367 WN--PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD 431 (524)
T ss_pred EC--CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence 84 5568999999999999999999899999999999999999999986 22333 34568889999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
++|++||+..+.++..+..|. .+|.+++|+|+|+++++|+.||.|.+|++.++ ++++.
T Consensus 432 stV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s 489 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKS 489 (524)
T ss_pred CeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccch-heeEe
Confidence 999999999999999997554 47999999999999999999999999999888 44443
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.4e-34 Score=277.73 Aligned_cols=245 Identities=18% Similarity=0.295 Sum_probs=216.9
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|.|+++.|-+++ +++|+.|++|.|||+.+|+...+ +.||...|..+++|+--.
T Consensus 147 i~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~vavS~rHp 206 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVAVSKRHP 206 (460)
T ss_pred hhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeeeecccCc
Confidence 4469999999999999986 99999999999999999998774 899999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. +|+||+.|.+++|||+++...+.++.||..+|.
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence 99999999999999999998777 5789999999999999988 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.+.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++. +|....|++++
T Consensus 282 ~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l---------------------hP~e~~fASas 338 (460)
T KOG0285|consen 282 SVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL---------------------HPKENLFASAS 338 (460)
T ss_pred eEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEec---------------------CCchhhhhccC
Confidence 99875433 57999999999999999998888777777665555554 45555688887
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.| .|+-|++..|..+..+.++.. -+++++...|+ ++++|+++|.+.+||.+++
T Consensus 339 ~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 76 699999999999988776544 68888888776 7788999999999999988
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=267.94 Aligned_cols=254 Identities=18% Similarity=0.233 Sum_probs=216.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
....+.+|++.|..+.|+|+|.. +|+|+.|..|.+|++.....-. .++++|.++|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence 34446789999999999999994 9999999999999976433211 1578999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
+|+..|++++.|.+|+.||+++|++++ .+++|.+.|+.+.-+.-|.. ++.|++.|+++++||+++...++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999877 57889999999997666776 78999999999999999999998886 45
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..+++++|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|. ++
T Consensus 175 yqltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~l 231 (338)
T KOG0265|consen 175 YQLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FL 231 (338)
T ss_pred eeEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------cc
Confidence 678889984 4456899999999999999999888888888888888888777775 78
Q ss_pred EEEeCCCcEEEEECCCC----ceeEEEcCCCCCCC--cCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSV----QLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++-+.|.++++||++-. +++..+.++.+... ...++|+|+++.+.+|+.|..+++||....
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 89999999999998753 45777776655333 457899999999999999999999997654
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=273.19 Aligned_cols=436 Identities=18% Similarity=0.249 Sum_probs=322.8
Q ss_pred CCcceeeccc-CCCCcEEEEEecC--CCeEEEEE-ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCC
Q 001318 334 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 409 (1101)
Q Consensus 334 ~~~~~~~~~~-h~~~v~~~~~spd--g~~llatg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (1101)
..-...+.++ ....|+|++||+- |.+|++.- +.+..+-|||+..+..... .+.-+..
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~ 202 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV 202 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence 3444555565 6778999999983 55444433 3345688999987766542 3445678
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
|...+|.|.+.-|......+.+.+|+.+++...+....++++. ..|.|++|.++|. ++||..+|.|.||+..+.+.
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~ 279 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI 279 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence 9999999976666666667899999999998887766676554 5799999999998 89999999999999888777
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee--ecCCCCceeEEEEccC---------------
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSAD--------------- 551 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~--------------- 551 (1101)
.+....|.+.|.++|.. .+| .|++|+.|..|..|| ..-+.+.. ++...+.+..++-...
T Consensus 280 ~k~~~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred EeEeeecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 77767999999999975 444 577799999999999 33333322 2222334443332111
Q ss_pred ----CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 552 ----GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 552 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
-..+..+|.+ ..+.++.+|+.+.+++++.|+.+++|+ ..+++.+..... ++.|+.|+|.| .++.|+..|
T Consensus 356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G 428 (626)
T KOG2106|consen 356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATG 428 (626)
T ss_pred ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccc
Confidence 1133344544 778899999999999999999999999 555555554332 47889999999 999999999
Q ss_pred cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeec
Q 001318 628 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 707 (1101)
Q Consensus 628 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 707 (1101)
...+.|.++. ..+...
T Consensus 429 ~w~V~d~e~~-~lv~~~--------------------------------------------------------------- 444 (626)
T KOG2106|consen 429 RWFVLDTETQ-DLVTIH--------------------------------------------------------------- 444 (626)
T ss_pred eEEEEecccc-eeEEEE---------------------------------------------------------------
Confidence 9999998764 222111
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccc
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
....+++.++|+|+|.+|+.++.|+.|+||.++..
T Consensus 445 ----------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~----------------- 479 (626)
T KOG2106|consen 445 ----------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN----------------- 479 (626)
T ss_pred ----------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-----------------
Confidence 02468899999999999999999999999988532
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE-----------------e-cCCCCC
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-----------------F-MPPPPA 848 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~-----------------~-~~~~~~ 848 (1101)
|+.....-.. +..+|+.+.||+|++++.+-+ |-.|..|.......+.. + -.+...
T Consensus 480 ----g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~ 553 (626)
T KOG2106|consen 480 ----GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD 553 (626)
T ss_pred ----CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence 2222211112 458899999999999999998 88899995432221111 1 123445
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
|.+++-+. +.+++|+|.+.|+|++|...-- .....+.+|++.|++++|..+...|++.+.|..|..|++
T Consensus 554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 77777777 8899999999999999987533 234566889999999999998889998889999999986
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.5e-34 Score=309.35 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=235.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+++..|++|+.+++.+..|..|++|.+..... .. ++ +...+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl----------------------~~--lk---~~~~l-------- 421 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL----------------------KK--LK---DASDL-------- 421 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhh----------------------cc--cc---chhhh--------
Confidence 456789999999999999999999999998742111 00 00 01100
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus 422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 1111222 33366677777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeee
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~ 974 (1101)
.|+|-|-++||+|.|++.++|..+. ..++.++.||.. .|.++.|+|+..|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999887 346778888875 8999999999999999 589999999999999999
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.|. ||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+. +| .+.++ ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999999888 55 44477 899999 799999999
Q ss_pred cCCcEEEEeccCCC
Q 001318 1055 SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1055 ~dg~v~vW~~~~~~ 1068 (1101)
.|++|++||+....
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997766
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=257.39 Aligned_cols=246 Identities=20% Similarity=0.343 Sum_probs=197.8
Q ss_pred ecccCCCCcEEEEEecC-CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 340 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spd-g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.+-+|++.|+.++|+|- |. +||+|+.|+.|+||+...+....- ...+-.+|+..|+.+||+|.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence 45569999999999998 77 799999999999999985322211 11134689999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 495 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h 495 (1101)
|++||+||.|.++.||.-..++ +....+++||...|.|++|+++|. +|++|+.|++|.||.+..+ +++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999887654 556778999999999999999999 8999999999999998854 467789999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...|..+.|+|.. .+|++++.|.+|++|+-... .+..++.+|.. .+.+++|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence 9999999999877 59999999999999976531 23444444444 4555566666
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|++|...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 668999999999999986532 11 1223457778887 5579999999999999654
No 45
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-29 Score=268.63 Aligned_cols=545 Identities=14% Similarity=0.158 Sum_probs=376.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC-CCCeEEEEEecCCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~la 423 (1101)
...|+|+|||.+.+. ||.+-.||.|.||++..+-... .++.++ ...|..++|+ +|..|.
T Consensus 25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence 467999999999885 9999999999999998753322 234444 5689999999 677888
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE--EecCcccCeEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS 501 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~ 501 (1101)
+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...++... .|...++.|.+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 99999999999999987655 5667788999999999998 78999999988888888877654 45556788999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--------CCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
+.|+ +++..+++|+.||.|++||...+........ ....|.++.+-.++
T Consensus 160 lsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------- 216 (691)
T KOG2048|consen 160 LSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------- 216 (691)
T ss_pred EEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence 9985 5557899999999999999998766552111 11233444444333
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 653 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 653 (1101)
.+++|..-|+|.+||...+.+++.+..+.. .|.+++..+++.++++++.|+.|.-|...+....
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------- 280 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------- 280 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence 499999999999999999999999887654 6999999999999999999999988876655221
Q ss_pred cCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccC
Q 001318 654 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 733 (1101)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~ 733 (1101)
|-... .
T Consensus 281 --------------------------------------------------------------wv~~~------------~ 286 (691)
T KOG2048|consen 281 --------------------------------------------------------------WVINS------------R 286 (691)
T ss_pred --------------------------------------------------------------eeeec------------c
Confidence 00000 0
Q ss_pred ccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee-EEE
Q 001318 734 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFA 812 (1101)
Q Consensus 734 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~-~~~ 812 (1101)
...|...|.+++..++ .+++++.|..+.+-....... .+ ..+.. ...-. -+.
T Consensus 287 r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~~--------~~p~~~~v~ 339 (691)
T KOG2048|consen 287 RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQKN--------LFPASDRVS 339 (691)
T ss_pred ccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhccc--------cccccceee
Confidence 0237778888888877 688899998887754321000 00 00000 00011 133
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCce---------eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK- 882 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~- 882 (1101)
..+..++++.-.+..+.+|.+.+... .+-.......|.+.+.|| +|++||.+.- ..++||.++....+
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVK 417 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCccee
Confidence 34444444444578888888865411 122223455699999999 9999998864 46788888752222
Q ss_pred ----eeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 883 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 883 ----~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
.......-.+..+.|+-|+..++.++ .+..+.+.++++.........+.. .....|..++.|++|.++|+
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~ 493 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI 493 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence 12222344578889999998888887 677888888877543322222111 22358999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCC--CcccCCCCCCC
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP--SAYLPAGVSSS 1033 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~ 1033 (1101)
+..+.|.+|++++++...... .-...|+.++|+| +-..|+.+..|+.|.-||++..++ .+... ...+|.....-
T Consensus 494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~l 570 (691)
T KOG2048|consen 494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKTL 570 (691)
T ss_pred eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhhc
Confidence 799999999999987654442 1247899999995 556788899999999999954432 11110 01112111111
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.-....+.|+|.+...++. -+.+-+.+.|.
T Consensus 571 ~~~~~gisfd~~n~s~~~~-~~a~w~~~id~ 600 (691)
T KOG2048|consen 571 IPGIPGISFDPKNSSRFIV-YDAHWSCLIDF 600 (691)
T ss_pred CCCCceEEeCCCCccEEEE-EcCcEEEEEec
Confidence 1112378888765444433 33455566554
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-30 Score=271.71 Aligned_cols=504 Identities=13% Similarity=0.162 Sum_probs=348.5
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
..+|+++|||.+.+.||.+-.||.|.||++..+=.... ++.++ ...|.+++|++.++ |.+.+.+|+|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 56899999999999999999999999999998643332 35554 45899999996665 88999999999999999
Q ss_pred CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 486 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++.+..+....+.|++++.++.. ..++.|+.||.+..++...+........ ....+.+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL 158 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL 158 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence 99999999999999999987655 6899999999777776655433322111 11123566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+++|+|++..+++|+.||.|++||...+..+.... ... ...-|.++.|-.+ ..|++|...|+|.+||...+ .
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T 236 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T 236 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence 67777777789999999999999999998777322 111 2223455555544 46788888888888887776 3
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
+++.+.
T Consensus 237 LiqS~~-------------------------------------------------------------------------- 242 (691)
T KOG2048|consen 237 LIQSHS-------------------------------------------------------------------------- 242 (691)
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 333221
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
.|...|.+++.++++.++++++-|+.+..|...+... -|-....
T Consensus 243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~~------- 286 (691)
T KOG2048|consen 243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINSR------- 286 (691)
T ss_pred ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeecc-------
Confidence 2677899999999999999999999888876533211 0211111
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE-EEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
...|...+.++++.++ .+++|+ |..+.+-.....+...........-. -+...+ .++|..--.+..+.+|.+.
T Consensus 287 -r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG 361 (691)
T KOG2048|consen 287 -RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG 361 (691)
T ss_pred -ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence 1238889999999888 677777 88877766544221111110001111 122333 3344444456677888776
Q ss_pred cce---------Eeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 878 VDE---------VKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 878 ~~~---------~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
+.. +++- ++.+ ..|.+.+.||||++|+.+.- ..++||.++............... ..-....+.|
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~-~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~f 436 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEK-ENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPL---ALLDASAISF 436 (691)
T ss_pred CcccccccChhhheeeecCCc-cceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchh---hhccceeeEE
Confidence 541 1111 2333 45899999999999998764 348888887643222222211111 1125678899
Q ss_pred cCCCcEEEE-E-eCCeEEEEEcCCceee--eeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCC
Q 001318 948 HQDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1023 (1101)
Q Consensus 948 s~dg~~la~-~-~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 1023 (1101)
+-|+..++. + ....+.++++.+.... ..+...+-...|..+..||||++||+.+.+|.|.+|++++++.......
T Consensus 437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r- 515 (691)
T KOG2048|consen 437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR- 515 (691)
T ss_pred EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-
Confidence 998887777 4 6778888888765433 3333333467899999999999999999999999999999987654420
Q ss_pred cccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1024 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1024 ~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++ ....+.+|+|.+-+.|+....|+.++-+|++..+
T Consensus 516 --ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 --LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 2233788887777889999999999999995444
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.2e-34 Score=283.85 Aligned_cols=284 Identities=20% Similarity=0.329 Sum_probs=243.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-+..|..+.|.|+|+. |++|+..|.+.+|+..+ .+|+ .++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCCCEEE
Confidence 4578999999999997 99999999999999743 2221 25889999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
+|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|++. .+++|++|++|+|||....+.-..+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 2444 448999999999888 79999999999999999999888999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.|++.. .++++++.|..|++||.+++.++.++..|...|..+.|++++ ++|+++|.|
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD 285 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKD 285 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCC
Confidence 999876 589999999999999999999999988888877777666655 689999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
..++++|+++.+.+.++++|.. .|+++.|+| ...+|.+|+.||.|..|.+... +.+..
T Consensus 286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~------------------ 344 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE------------------ 344 (464)
T ss_pred ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-ccccC------------------
Confidence 9999999999999999987655 799999999 7789999999999999987522 11100
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
...+|...|
T Consensus 345 -----------------------------------------------------------------------i~~AHd~~i 353 (464)
T KOG0284|consen 345 -----------------------------------------------------------------------IPPAHDGEI 353 (464)
T ss_pred -----------------------------------------------------------------------CCcccccce
Confidence 013488899
Q ss_pred EEEEEcCCCceEEeeecCceEEeeecc
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
.+++|+|=|..|++++.|.++++|.-.
T Consensus 354 wsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 354 WSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999999999999999754
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=266.89 Aligned_cols=293 Identities=16% Similarity=0.317 Sum_probs=244.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
++.+|.+.|.|+++.|..+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998554 7899999999999999888 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|++..+.++.+.||-..|.++..+|.- +.|++|+.|.++++||+++...+..+.+|...|.++.+.|-.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--------- 289 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--------- 289 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC---------
Confidence 999999999999999999999998766 589999999999999999999999999998888877765533
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..+++|+.|++|++||+..|+...++..|.. .|.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 3599999999999999999999988886654 79999999999999999876 6788888776 332
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+
T Consensus 354 ~nl----------------------------------------------------------------------------- 356 (460)
T KOG0285|consen 354 QNL----------------------------------------------------------------------------- 356 (460)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 222
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.+|...|.+++.+.||- +++++.+|.+..||+..+-.-..++... ..|.
T Consensus 357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS-------- 405 (460)
T KOG0285|consen 357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS-------- 405 (460)
T ss_pred -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence 22667778888877774 7888888999999985432111110000 0111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 834 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 834 (1101)
...+..|.+.+|...|..|++|. |.+|++|.-.
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 11466799999999999999998 9999999754
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=251.31 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=235.9
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.+++..++|+|- |..|++++.|..|++|+..... +-.+.. ....+|...|++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-------------------s~~ck~--vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-------------------SWTCKT--VLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-------------------cEEEEE--eccccchheeeeeee
Confidence 358889999999998 8899999999999999874210 000111 112359999999999
Q ss_pred ecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecC
Q 001318 814 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG 887 (1101)
Q Consensus 814 s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~ 887 (1101)
+|.|++||+++ |.++.||.-. +.+++.+++||+.+|.+++|++ +|++||++++|..|-||.+.. .++...++.
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999865 4578899999999999999999 999999999999999999874 468899999
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEE
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 966 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd 966 (1101)
|...|..+.|+|...+|+|+|.|.+|++|+-..+ ....+.+.+.+|.. .|.+++|++.|..|++ +.|++++||-
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 9999999999999999999999999999987742 23567788888874 8999999999999888 5889999998
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.-+. + ...|+..++.+.|. ...|++++.|+.|++|....+-.--.++.......-|.. .|. ++.|.|..
T Consensus 224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV 292 (312)
T ss_pred eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence 6521 1 23578999999998 567999999999999987643111111111111112223 466 99999965
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001318 1047 PNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+++|++|++||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=282.07 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=248.0
Q ss_pred cccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.||..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999987 55555 7999999999999999999 699999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+||+++|+++..|. ....++++.|++++ .+.+++|+.|+.|+.||+++++.+.++..|-+.+..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999986 45567889998766 37899999999999999999999999988888888888877775
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
++++.++|++++||+.+....+..+... ......++..+|+++++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 6999999999999999988776555322 223577899999999999999999999998643311
Q ss_pred c--ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 640 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 640 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
. .+.+++|
T Consensus 420 ~nkkK~feGh---------------------------------------------------------------------- 429 (503)
T KOG0282|consen 420 LNKKKRFEGH---------------------------------------------------------------------- 429 (503)
T ss_pred cCHhhhhcce----------------------------------------------------------------------
Confidence 1 0111110
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
T Consensus 430 -------------------------------------------------------------------------------- 429 (503)
T KOG0282|consen 430 -------------------------------------------------------------------------------- 429 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.-.+--..+.|||||.+|++|+ ||.+.+||.++-+.+..++.|...+..+.|+|.....+|+++.||.|++||
T Consensus 430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 0123345688999999999998 999999999999999999999999999999998889999999999999996
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-32 Score=270.21 Aligned_cols=288 Identities=19% Similarity=0.344 Sum_probs=232.8
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc---eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
.+..|.+.|+.+.||++|+ +|||++.|.+..||++.... ..+++.+|..+|..+.|+| |.++|++|+.|..+.
T Consensus 219 il~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--DdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDRYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCCeEEecCchHhee
Confidence 5788999999999999999 89999999999999987544 3678999999999999965 447999999999999
Q ss_pred EEecCCCCceeeecCC-CCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 524 AWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
+||..++.....+... ... +.+++|.|||..+++|+.|+++..||++. ..+...++.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S---------------------~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gv 352 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFS---------------------VSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGV 352 (519)
T ss_pred eccCCcchhhhhcccCcCCC---------------------cceeEEccCCceeEecCCCCcEEEecCCc-chhhccccc
Confidence 9999998877655433 333 44455555556899999999999999864 444444433
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
. ...|.+++.++||+++++.+.|..|++++.++.... .
T Consensus 353 r-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-~---------------------------------------- 390 (519)
T KOG0293|consen 353 R-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-G---------------------------------------- 390 (519)
T ss_pred c-cceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-c----------------------------------------
Confidence 2 245889999999999999999999998876543000 0
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+
T Consensus 391 ----------------------------------------------------------------------l--------- 391 (519)
T KOG0293|consen 391 ----------------------------------------------------------------------L--------- 391 (519)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 841 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~ 841 (1101)
.....+|+++..|.|++++.+.- +..+++||++....++.
T Consensus 392 ---------------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 392 ---------------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ---------------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 00345677778888888777765 78899999999999999
Q ss_pred ecCCCCC--eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeC
Q 001318 842 FMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~ 918 (1101)
+.||... +..-+|--.+..++|+|++|+.|+||+..+++++..+.||...|++|+|+|. -.++||||.||+||||..
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9998654 5556677646689999999999999999999999999999999999999995 467899999999999987
Q ss_pred CC
Q 001318 919 DG 920 (1101)
Q Consensus 919 ~~ 920 (1101)
..
T Consensus 513 ~~ 514 (519)
T KOG0293|consen 513 SD 514 (519)
T ss_pred Cc
Confidence 64
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-31 Score=301.64 Aligned_cols=289 Identities=27% Similarity=0.423 Sum_probs=246.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...|.++.|+++|+.+++++.++.+++|+..... + .....+ .+|...|..++|+|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence 46788999999999999999999999999872211 0 011112 249999999999999
Q ss_pred CCEEEEEe-CCeEEEEEC-CCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++++++++ |++|++||+ ..+..++++++|...|++++|+| +++++++|+.|++|+|||+++++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~ 973 (1101)
++|++|+.+|++++.|+.|+|||+.++... +.....++.... .+..+.|+|++++++++ .|+.+++||+..+.+.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999997643 445555655533 68999999999999995 7779999999999999
Q ss_pred eeccCCCCCC---CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 974 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 974 ~~~~~~~h~~---~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++++. +|....+. .++++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 8887 4443 55566778899999999999999999999999998887 33222233 788888 56889
Q ss_pred EEEe--cCCcEEEEecc
Q 001318 1051 ALGL--SDGGVHVFEPL 1065 (1101)
Q Consensus 1051 ~s~~--~dg~v~vW~~~ 1065 (1101)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9888 79999999864
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-31 Score=300.75 Aligned_cols=257 Identities=21% Similarity=0.372 Sum_probs=216.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc--eeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
|...|.|+.|||+|++ +++++.|+.+++|+..+.+ .+. .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4889999999999997 9999999999999997766 322 36899999999999999999
Q ss_pred EEEEEcCCeEEEEEcc-CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 422 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 422 las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+++++.|++|+|||+. .+..++ ++.+|...|++++|+|+++ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 445444 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
+++| .+++++|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 9998 56678999999999999999998763 2333222211 1 4566667777779999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCC-CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
++.|+.+++||+..+..+..+..+... ..+.+..+++.+.++++|+.|+.|++|+..++ ..+..+.+|
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h 420 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH 420 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence 999999999999999999998877653 23445556789999999999999999999886 555444443
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=272.70 Aligned_cols=285 Identities=16% Similarity=0.249 Sum_probs=241.3
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
-...|..+.|.|+|+.|++++..|.+.+|+...-.+ + ..+ ..|++.|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------E------til--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------E------TIL--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------H------HHh--hhhcccceeEEEccC
Confidence 346789999999999999999999999998522111 1 111 239999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
|.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999864 4455555554 8899999999 6667889999999999999988888889999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
+.|+|...+||++|.|..|++||.+++. ++....+|.. .|..+.|++++.+|++ +.|..+++||+.+.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999965 5666667764 8999999999999999 79999999999988887
Q ss_pred eeccCCCCCCCeeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 974 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
..+. +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+..+. ..|... |+ +++|+| -|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence 7765 89999999999994 5578899999999999998666654443 344344 78 999999 6899999
Q ss_pred EecCCcEEEEeccCCC
Q 001318 1053 GLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~ 1068 (1101)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999875544
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-31 Score=245.84 Aligned_cols=246 Identities=17% Similarity=0.209 Sum_probs=217.5
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+-.|++.|.++.|+-||+| .++++.|.+|++||...+..+++ +.+|...|..++.+.|.
T Consensus 12 ~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALSSDN 71 (307)
T ss_pred eecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeeccccccc
Confidence 34459999999999999997 88888999999999999999884 88999999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC--CceEEEecCccc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEA 497 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~ 497 (1101)
..+++|+.|+.|.+||+++|+.++ .+.+|.+.|+.++|+.+.. ++++|+.|.++++||.++ -++++.+.....
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred cccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 999999999999999999999877 6899999999999999988 899999999999999886 467888888888
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++... ++.+++|+.||++|.||++.+.....+- ..++++++|+++++..+
T Consensus 147 ~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 147 GVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSKDGNCSL 199 (307)
T ss_pred ceeEEEec----ccEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecCCCCEEE
Confidence 99998753 2689999999999999999765433222 23667777777778999
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++.|+++++.|-.+|+.+..+++|.....=..++++.....+++|++||.|++||+.+.
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 999999999999999999999998887665667888888899999999999999999877
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=267.70 Aligned_cols=232 Identities=20% Similarity=0.357 Sum_probs=203.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....|.|+.+..+ .+++|..|++|.|||..+.+++. ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 4568999988643 39999999999999999887776 599999999999985 56999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---EEEecCcccCeE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 500 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 500 (1101)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. +++|++.|.+|.|||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 68899999999999743 799999999999999987654 356789999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.+.|. . +++++++.|.+|++|++.+.+.+.++.+|...|.++.+ .++++++|+
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-----------------------r~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVSGS 377 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc-----------------------cCeEEEecC
Confidence 99873 2 59999999999999999999999888888877666654 235789999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.|.+|++||+..|.++..+++|.. -|.|+.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998766 6889999 5688999999999999999876
No 57
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=100.00 E-value=9.4e-30 Score=266.74 Aligned_cols=623 Identities=15% Similarity=0.176 Sum_probs=340.1
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
.+.+..+-.|.+.|+.+.|+|-...|||||+.|..|+||.+..+-... ..-....+.+..-.|-|+.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~ 135 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLR 135 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEee
Confidence 444555556999999999999887799999999999999998442211 0111223455566899999
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-CceEEEec
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFE 493 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~ 493 (1101)
|+|...-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+|||.+. ++.++..+
T Consensus 136 fHpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te 210 (1012)
T KOG1445|consen 136 FHPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTE 210 (1012)
T ss_pred cccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccc
Confidence 99966666667778999999999988655 6899999999999999999 899999999999999874 67888888
Q ss_pred CcccCeE-EEeeeecCCccEEEEEecC----CcEEEEecCCCCc-eeeecCCC-CceeEEEEccCCceE-EeccccCcee
Q 001318 494 GHEAPVY-SVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS-RVDYEAPG-RWCTTMAYSADGTRT-YQGFRKRSLG 565 (1101)
Q Consensus 494 ~h~~~v~-~v~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~-~~~~~~~~-~~v~~~~~s~~~~~~-~~~~~~~~~~ 565 (1101)
+|.+.-. .+.| -++-+.|++.+.+ ..|++||.+.-.. ..++.... ..|.---|.||.+.+ +.|.....+.
T Consensus 211 ~H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 211 GHGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ccccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEE
Confidence 8876522 2444 3444577777765 5689999876432 22221111 112122234444322 2233333444
Q ss_pred EEEEcCCCCEEEEEe---------------------CCCc-EEEEECCCCceeEE--------E-cCC------------
Q 001318 566 VVQFDTTKNRFLAAG---------------------DDFS-IKFWDMDSVQLLTS--------I-DAD------------ 602 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~---------------------~dg~-i~iwd~~~~~~~~~--------~-~~~------------ 602 (1101)
++.+.+...+|.-+- .|+. .+++.+.....+-. + ..|
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p 368 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP 368 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence 444333222111000 0000 01111111100000 0 000
Q ss_pred ---------CCCCCcCeEEEccCCC-------------EEE-EEeCCCcEEEE--------------------EecCc--
Q 001318 603 ---------GGLPASPRIRFNKDGC-------------LLA-VSTNDNGIKIL--------------------ATSDG-- 637 (1101)
Q Consensus 603 ---------~~~~~v~~~~~s~~~~-------------~l~-~~~~dg~i~iw--------------------~~~~~-- 637 (1101)
+....+..+++.|..+ ..+ +++ .+.+. |....
T Consensus 369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~s---f~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpa 445 (1012)
T KOG1445|consen 369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPS---FVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPA 445 (1012)
T ss_pred CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCC---CccccCCCCCCCccccccccccCCCccccCCC
Confidence 0000111222221100 000 000 00000 00000
Q ss_pred ---ccccccc---------------------ccccccccccCCCCCCcccccchhh----hhh-hccccccccccccccc
Q 001318 638 ---IRLLRTF---------------------ENLAYDASRTSENSKPTISPISAAA----AAA-ATSAGLADRAASMVSI 688 (1101)
Q Consensus 638 ---~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 688 (1101)
+...+.+ ++.+..+......+.....+....+ +.. .+.+. ..+..|....
T Consensus 446 V~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~-~~ksvPe~~~ 524 (1012)
T KOG1445|consen 446 VPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPA-FGKSVPEQPP 524 (1012)
T ss_pred cCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcc-ccccCCCCCC
Confidence 0000000 0000000000000000000000000 000 00000 0000000000
Q ss_pred CCCCCccccccCccceeeccC------CCcceeeeccccCCC------ccccccccCccccccceEEEEEcCCCceEE--
Q 001318 689 PGMNGDVRSLADVKPRITEES------NDKSKVWKLTELSEP------NQCRSLRLPENLRATKISRLIFTNSGNAIL-- 754 (1101)
Q Consensus 689 ~~~~~~~~~~~~~~~l~~~~~------d~~i~~w~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-- 754 (1101)
..+ ....+.......+.+. -|.+.-|.--..... ..++.+... -.+.-.. |+.+..+++
T Consensus 525 ~~~--g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgEsnG--fcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNF--GKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGESNG--FCANNKRVAVP 597 (1012)
T ss_pred ccc--CCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCccCc--eeeccceEEEE
Confidence 000 0000000000000000 011111111100000 001110000 0011111 233333333
Q ss_pred eeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEE
Q 001318 755 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFN 832 (1101)
Q Consensus 755 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd 832 (1101)
..+..|.|-||+++....-+++.. .+......|+.+.|.| |.+.||+++ ||.|++|.
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 355679999999976554444432 2222566789999998 667888888 89999999
Q ss_pred CCCCc-------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 833 MMTFK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 833 ~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
+..+. .-..+..|...|+++.|+|--...||+++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence 87543 33557889999999999997788999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC----CeEEEEEcCCcee--eeeccC
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVP 978 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d----~~v~vwd~~~~~~--~~~~~~ 978 (1101)
|.+.||+|+||+...++. .+..-.+.. ...-..+.|.-||+++++ +.| ++|.+||..+... +.+...
T Consensus 737 tVcKDg~~rVy~Prs~e~----pv~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQ----PVYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred eeecCceEEEeCCCCCCC----ccccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999887653 222222222 134467899999999988 544 5799999876542 211111
Q ss_pred CCCCCCeeEEEEcCCCC-EEEEEEcCCeEEEEEcCCcee
Q 001318 979 RESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~-~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+- .-.+.--.+.+|.. ++++|-.|..|.+|.+...+.
T Consensus 811 Dv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 811 DV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cc-cCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 10 11222223455655 467888999999999865543
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.1e-31 Score=274.61 Aligned_cols=264 Identities=17% Similarity=0.243 Sum_probs=215.7
Q ss_pred Ccceeecc-cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 335 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~-~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
|++..+++ +|+..|+++.|.|-.-+||++|+.|+.|+||++.. +++++ ++.+|..+|..
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhhh
Confidence 44444444 59999999999995445899999999999999987 55555 58999999999
Q ss_pred EEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 413 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.+
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence 9999999999999999999999999999876432 2467899999999955 7899999999999999999999999
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
..|.+.|..+.|. ++|..+++.+.|+++++|+.+..-.+..... .......++..+|+
T Consensus 339 d~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 339 DRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPN 396 (503)
T ss_pred HhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcc--------------------hhhccCcceecCCC
Confidence 9999999999984 5668999999999999999987544432211 11124556777888
Q ss_pred CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
++++++-+.|+.|.++.+... .....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||..+- +.+..+.
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk 471 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK 471 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence 889999999999999986543 22344556655556678999999999999999999999999876 4444443
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.7e-30 Score=239.30 Aligned_cols=286 Identities=17% Similarity=0.267 Sum_probs=231.3
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.++.+|.++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3688999999999999999999999999999999999998777 7899999999999999998 6999999999999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEec
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
||+.+|+.++.|.+|.+.|+.+.|+. +...+++|+.|.++++||.+.. ++++.+......|.++.++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--------- 154 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--------- 154 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---------
Confidence 99999999999999999999999854 4479999999999999999874 3444444444445444432
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+..+++|+.||+++.||++.|+....+-++ +|+|++|++|++..++++.|+++++.|-.+|
T Consensus 155 --------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 155 --------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred --------------ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 346999999999999999999876665433 6999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
++++...+|...-.
T Consensus 216 klL~sYkGhkn~ey------------------------------------------------------------------ 229 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEY------------------------------------------------------------------ 229 (307)
T ss_pred HHHHHhccccccee------------------------------------------------------------------
Confidence 78887777654311
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
-...+++.....++++++||.+++||+... ..+..
T Consensus 230 ----------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~----------------------~~~sk- 264 (307)
T KOG0316|consen 230 ----------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDE----------------------TQISK- 264 (307)
T ss_pred ----------------------eeeeeecccceeEEeccCCceEEEEEeccc----------------------eeeee-
Confidence 123455556667888888999998887321 11111
Q ss_pred cCCCCCCCC-eeEEEEecCCCEEEEEeCCeEEEEECC
Q 001318 799 VTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM 834 (1101)
Q Consensus 799 ~~~~~~~~~-i~~~~~s~dg~~la~~sdg~i~vwd~~ 834 (1101)
+.. +... +..+.+.|.-..++++.++.+..|.-+
T Consensus 265 ~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 265 LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred ecc--CCceeEEeeecccCccceeEecCCceeceeeh
Confidence 111 3333 788999999888999888888888643
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=7.9e-32 Score=262.85 Aligned_cols=272 Identities=21% Similarity=0.334 Sum_probs=227.4
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
....|+|+.+. |+ .+++|..|++|+|||..+-.+++.+.||++.|.|+.| +. ..+++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~--rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DE--RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cc--eEEEecCCCceEEEEeccCC
Confidence 45789999984 33 4899999999999999999999999999999998876 22 59999999999999999999
Q ss_pred CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCC
Q 001318 531 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA 607 (1101)
Q Consensus 531 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 607 (1101)
+.+.++-.|...|..+.|+. +++++++.|.++.+||+.....+ ..+. +|...
T Consensus 268 e~l~tlihHceaVLhlrf~n-----------------------g~mvtcSkDrsiaVWdm~sps~it~rrVLv--GHrAa 322 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN-----------------------GYMVTCSKDRSIAVWDMASPTDITLRRVLV--GHRAA 322 (499)
T ss_pred chhhHHhhhcceeEEEEEeC-----------------------CEEEEecCCceeEEEeccCchHHHHHHHHh--hhhhh
Confidence 99999988888888887754 47999999999999999876532 2333 33456
Q ss_pred cCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccc
Q 001318 608 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS 687 (1101)
Q Consensus 608 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1101)
|+.+.|+ .+++++++.|.+|++|++.++ +.++.+.+
T Consensus 323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g----------------------------------------- 358 (499)
T KOG0281|consen 323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG----------------------------------------- 358 (499)
T ss_pred eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence 8888884 569999999999999999888 55555543
Q ss_pred cCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeec
Q 001318 688 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 688 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
T Consensus 359 -------------------------------------------------------------------------------- 358 (499)
T KOG0281|consen 359 -------------------------------------------------------------------------------- 358 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC
Q 001318 768 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP 846 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 846 (1101)
|...|.|+.+ .|+++++|+ |.+|++||++.|.+++.++||+
T Consensus 359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 3333333332 677888998 8999999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
.-|.|+.|. .+.+++|..||+|+|||+.++. |+.++..|++.|..+.| |...+++++.|.+|.|||
T Consensus 401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999995 4789999999999999998753 45666789999999999 778999999999999999
Q ss_pred CCCcc
Q 001318 918 SDGWE 922 (1101)
Q Consensus 918 ~~~~~ 922 (1101)
...+.
T Consensus 476 Fl~~~ 480 (499)
T KOG0281|consen 476 FLNGP 480 (499)
T ss_pred cCCCC
Confidence 98754
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.1e-29 Score=305.97 Aligned_cols=310 Identities=15% Similarity=0.218 Sum_probs=224.2
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC----cee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 442 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~ 442 (1101)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 678889988765543210 11125569999999999999999999999999999998642 111
Q ss_pred e-eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCc
Q 001318 443 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 521 (1101)
Q Consensus 443 ~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~ 521 (1101)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3468999999986433 7999999999999999999999999999999999998642 4467888888888
Q ss_pred EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 522 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 522 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
|++||+.+. ..+..+..
T Consensus 600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQG---------------------------------------------------------------VSIGTIKT 616 (793)
T ss_pred EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence 887776542 22222221
Q ss_pred CCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 602 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 602 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
+ ..+.++.|+ +++.+|++|+.||.|++||+.++......+
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------ 657 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------ 657 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence 1 136778885 579999999999999999986541111100
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
.+
T Consensus 658 ------------------------------------------------------~~------------------------ 659 (793)
T PLN00181 658 ------------------------------------------------------IG------------------------ 659 (793)
T ss_pred ------------------------------------------------------cC------------------------
Confidence 01
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC----
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---- 835 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~---- 835 (1101)
|...|.++.|. ++.++++++ |++|++||+..
T Consensus 660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 33344444443 344445544 55555555542
Q ss_pred --CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-------------ecCcccCeeEEEEcCC
Q 001318 836 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA 900 (1101)
Q Consensus 836 --~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d 900 (1101)
...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+.. ...|...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 345678889999999999999 889999999999999999765432211 2345667999999999
Q ss_pred CCEEEEEeCCCceEEEeC
Q 001318 901 LNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 901 g~~l~s~s~D~~v~iwd~ 918 (1101)
+..|++|+.||+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 62
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=243.96 Aligned_cols=288 Identities=17% Similarity=0.291 Sum_probs=243.7
Q ss_pred cccCCCCCeEEEEEec---CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+..||+.+|..++||| +|-+|++++.|+.=.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4679999999999997 89999999999999888889998777 7999999999999988877 68999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
+|||.-+|..+++|. |..-|.+++|+ .|.++|++|+.++.+|+||++..+..
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~Ap------------------------- 135 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAP------------------------- 135 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCC-------------------------
Confidence 999999999999997 88889999984 45578888888888888877653321
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
...+. ++...|..+.|....+.+++.+.|++||+||.+++
T Consensus 136 -------------------------------------p~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg- 175 (334)
T KOG0278|consen 136 -------------------------------------PKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG- 175 (334)
T ss_pred -------------------------------------chhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccC-
Confidence 12222 23446788888888888898899999999999887
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
..++.+.
T Consensus 176 t~v~sL~------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 176 TEVQSLE------------------------------------------------------------------------- 182 (334)
T ss_pred cEEEEEe-------------------------------------------------------------------------
Confidence 2211110
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 183 -------------------------------------------------------------------------------- 182 (334)
T KOG0278|consen 183 -------------------------------------------------------------------------------- 182 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
....|+++.++++|++|.++..+.|.+||..+...++.++ -...|.+..++| +..+++.|++|+.++.||..+
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 3456788889999999988888999999999999888876 345699999999 778999999999999999999
Q ss_pred ceEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 879 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 879 ~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
++.+..+ ++|.++|.||.|+|||...++|+.||+|++|.+..++
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999886 9999999999999999999999999999999887654
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=268.71 Aligned_cols=246 Identities=25% Similarity=0.412 Sum_probs=208.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
.+|.+.|++++|+|++++ +++|+.||.|.+|++.+++... .+..|...+.++.|+|++++
T Consensus 6 ~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY 65 (289)
T ss_pred cccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence 369999999999999995 8899999999999999876544 36788899999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
|++++.|+.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++.+..+..|...+.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 9999999999999999876554 4668888999999999977 7888888999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
++|++. +.++++++.|+.|++||++..+....+..+...+.++.| +|+++.+++++.
T Consensus 141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~---------------------~~~~~~l~~~~~ 197 (289)
T cd00200 141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF---------------------SPDGEKLLSSSS 197 (289)
T ss_pred EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE---------------------CCCcCEEEEecC
Confidence 998654 578888888999999999876666666555544555554 455557888888
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|++||+.+++.+..+..+. ..+.++.|++++.++++++.+|.|++|++.++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 9999999999988888875443 36899999999999998888999999998765
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.5e-28 Score=268.29 Aligned_cols=285 Identities=28% Similarity=0.472 Sum_probs=239.2
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
++.+|.++|.+++|+|+++ ++++++.|+.|++|++.+++....+..|...+..+.|.+ +++++++++.||.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 4678999999999999988 799999999999999999988888999999998888854 447899999999999999
Q ss_pred cCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
+...+....+..+...+.++.|+++ ++++++++.++.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---------------------GRILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---------------------CCEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 9987666666655555555555544 456777777999999999988888888744 34
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.+.++.|+|++.++++++.++.|++||+.++ +....+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~----------------------------------------- 174 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLT----------------------------------------- 174 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEe-----------------------------------------
Confidence 6899999999999999888999999997644 1110000
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
T Consensus 175 -------------------------------------------------------------------------------- 174 (289)
T cd00200 175 -------------------------------------------------------------------------------- 174 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
.|...+.+++|+|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus 175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0445677788888887777777 888999999888888888788
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
...+.+++|++ ++.++++++.||.|++||+.+++....+..|...|.+++|++++.+|++++.|+.+++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-29 Score=238.98 Aligned_cols=295 Identities=19% Similarity=0.288 Sum_probs=229.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.||+.+++.+.++.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|+....+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998776 7999999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-----CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|+++|+++..++ ...+|..+.|++.. ++++....+ +.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999998 56788888886543 444443321 2344444332100
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
++...++...+..+. ..++.+-|+|-+++|++|..||.|.+||+++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111344455555443 3688899999999999999999999999988
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+.+.+...+
T Consensus 179 g~~~v~s~~----------------------------------------------------------------------- 187 (327)
T KOG0643|consen 179 GKELVDSDE----------------------------------------------------------------------- 187 (327)
T ss_pred Cceeeechh-----------------------------------------------------------------------
Confidence 843322110
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC------
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 869 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 869 (1101)
.|...|+.+.+++|..++++++ |.+-++||+.+.++++++. ...++++.+++|.....+..|+.+.
T Consensus 188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT 260 (327)
T KOG0643|consen 188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT 260 (327)
T ss_pred ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence 1566778888888888888888 8889999999999999887 4667999999994444444444332
Q ss_pred -------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 870 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 870 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.-++|++...+.+..+++|-++|++|+|+|||+..+||+.||.|++.-.+.
T Consensus 261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 123334334456778899999999999999999999999999999987654
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=5.5e-29 Score=239.61 Aligned_cols=270 Identities=14% Similarity=0.184 Sum_probs=202.8
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc---cccccccCCCCCeEEEEE
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~ 415 (1101)
..+..|++.+.+.+|||||. |+|||+.|..|+|.|++..-... +.-++..+... -...++..|.+.|+++.|
T Consensus 106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks----~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS----KPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc----chhhhccCCcccCCceEeehhhccCcccceee
Confidence 34566999999999999999 69999999999999997311000 00011111111 112368899999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 492 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 492 (1101)
+|....|++|+.|++|+++|+..-...+-+..+. ...+|.++.|.|.|. +|+.|.+-.++++||+.+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 9999999999999999999998654333332333 457899999999999 7899999999999999998886543
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
..|.+.|+++.+ ++.+.+.++++.||.|++||--+.+++.++.. .|.+..+....|..+
T Consensus 258 ~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-------------------AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 258 DQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN-------------------AHGGSEVCSAVFTKN 316 (430)
T ss_pred cccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHh-------------------hcCCceeeeEEEccC
Confidence 469999999986 56668999999999999999887777655432 223345666667777
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCCCEEEEEeC-CCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVSTN-DNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 637 (1101)
++++++.|.|..+++|.+.+++++..+.+.+..+. -+...|+....+++.-.+ .+.+.-||.+++
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 77999999999999999999999999876533221 234556666666665433 467888887776
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-28 Score=302.14 Aligned_cols=321 Identities=12% Similarity=0.154 Sum_probs=240.8
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
+|-+++|+............-.+ ..|...|.+++|+|+|+++++++.|+.|+||++...... +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~------------ 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GR------------ 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cc------------
Confidence 35566666654332221111111 237889999999999999999999999999997431100 00
Q ss_pred CCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
........+ .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|.+++|+|.++.+|++|+.
T Consensus 521 -~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 521 -DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred -ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 000000001 1346788999987 478899998 9999999999999999999999999999999757899999999
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEc-CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
||.|++||+.++..+..+..| ..|.++.|+ ++|.+|++|+.|++|++||+..... ......+|. ..|..+.
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~ 668 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVR 668 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEE
Confidence 999999999999888888765 679999995 5799999999999999999987432 223334554 3789999
Q ss_pred EcCCCcEEEE-EeCCeEEEEEcCCc------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 947 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 947 ~s~dg~~la~-~~d~~v~vwd~~~~------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
|. ++.++++ +.|+.|++||+..+ ..+..+. +|...+.+++|+|++.+|++|+.|+.|++|+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 6667777 68999999999753 4455554 7899999999999999999999999999999877655433
Q ss_pred cCCCcc--cC---CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1020 INPSAY--LP---AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1020 ~~~~~~--~~---~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+..... .. ..+....|. +++|+| ++.+|++|+.||+|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence 221110 00 011122244 899999 7899999999999999996
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=248.25 Aligned_cols=291 Identities=19% Similarity=0.295 Sum_probs=237.5
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+..|+|||++|++++-||.|.+|++.++....+-+..+. +..+ -++..|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fM--------Mmd~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFM--------MMDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------ccee--------ecccceEEEeeccc
Confidence 456788999999999999999999999999866554333222211 1111 16889999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
..++|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|--+++|+++..++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEcCCcee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLEC 972 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~~~~~~ 972 (1101)
..|++||.++++++.||+|++|+.++++. +.++.... ...+|..+..-|- -..+++ ...+++.|.++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 99999999999999999999999998664 33322111 1245667766664 345555 467889998886 677
Q ss_pred eeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 973 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 973 ~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
++.+.... -.+...+.++||.|.++.+.++|+.++.|.+.+|.+...+..+. --++.++.+| ..++++
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhh
Confidence 77765322 25567788999999999999999999999999999988877322 2244699999 468999
Q ss_pred EEecCCcEEEEe
Q 001318 1052 LGLSDGGVHVFE 1063 (1101)
Q Consensus 1052 s~~~dg~v~vW~ 1063 (1101)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-27 Score=219.00 Aligned_cols=276 Identities=17% Similarity=0.246 Sum_probs=212.4
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+.++.....|.+++|+|.|. |.|+|+..++.+|.....-..+... .+..........+.-+.|.+.|+|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 3556778899999999999999 6999999999998866432222100 0000000111122356799999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCC---CCeEEEEEec-CCCcEEEEeCCCCceEE
Q 001318 417 PDGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 490 (1101)
|+|++||+|+.|++|++.-.+ +........++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 999999999999999987554 43334444568889999999999654 333 566654 68889999999999999
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.+.||++.|.++- +-++-.+++|+.|.+|++||++-..++..+... +.-.|.....+..+++.
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 9999999998874 345579999999999999999876665544321 11112233467788889
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
|.|++|++|-.|....+||++.++.++.+..| ...|.|+.|+|...|+++++.|..|++-|+...
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999999999999999999755 447999999999999999999999999987644
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=235.78 Aligned_cols=297 Identities=17% Similarity=0.276 Sum_probs=250.3
Q ss_pred cccccceEEEEEcC---CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 735 NLRATKISRLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
.+|..+|..++|+| +|-.|++++.|+.-.+ .+-++|..+.. + .+|.+.|.+.
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-f--eghkgavw~~ 65 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-F--EGHKGAVWSA 65 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-e--eccCcceeee
Confidence 56999999999975 8989999999976543 23355554443 2 2499999999
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcc
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 889 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~ 889 (1101)
++..+....|+++ |-+-++||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus 66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9999999999988 8899999999999999987 888899999999 9999999999999999999874 3567789999
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
+.|..+.|....+.++|++.|++||+||..++...... ... ..|.++.+++||++|.++..+.|..||..+
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks 214 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--EFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS 214 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--ecC-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence 99999999998899999999999999999997643322 221 478999999999999999999999999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCE
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1049 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~ 1049 (1101)
...++.+.. ...|.+..++|+...+++|++|..++.||..+|+.+..+.. ||.+. |. ++.|+| ||..
T Consensus 215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk------gh~gp-Vh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK------GHFGP-VH--CVRFSP-DGEL 281 (334)
T ss_pred ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc------CCCCc-eE--EEEECC-CCce
Confidence 999988765 56899999999999999999999999999999999877532 33233 55 999999 7999
Q ss_pred EEEEecCCcEEEEeccCCC--ccccCCCCCCCC
Q 001318 1050 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNG 1080 (1101)
Q Consensus 1050 l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~ 1080 (1101)
.++||.||+|++|....++ +.|.-..|-+.|
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 9999999999999998877 455555554443
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.1e-28 Score=240.19 Aligned_cols=306 Identities=17% Similarity=0.295 Sum_probs=231.5
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-eEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iw 481 (1101)
-..|.+.|.++... ++++++|+.||.+++||..... .. .+.||.++|.+++|.-.+. .-.+++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34689999999988 8999999999999999998643 32 5889999999888853332 1159999999999999
Q ss_pred eCCCCceE----EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc------eeEEEEccC
Q 001318 482 DATNGAKQ----YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSAD 551 (1101)
Q Consensus 482 d~~~~~~~----~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~------v~~~~~s~~ 551 (1101)
-++.++.. +...||...|.++.. .++|..+++|+-|.+|.+|+..+ ...-.++..... -..-.-...
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccC
Confidence 99877543 344599999999986 56678999999999999999322 111111000000 000000000
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
...++.||+. ++..+.|++ ...+++++.|.+|+.||+.++..+..+.... .++|+.++|..++|++|+.|..+++
T Consensus 252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 0022334433 555566665 4569999999999999999999988887544 4889999999999999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||.+++.
T Consensus 327 ~DPR~~~------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 327 WDPRTGD------------------------------------------------------------------------- 333 (423)
T ss_pred cCCCCCC-------------------------------------------------------------------------
Confidence 9876550
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
|
T Consensus 334 --------------------------------------g----------------------------------------- 334 (423)
T KOG0313|consen 334 --------------------------------------G----------------------------------------- 334 (423)
T ss_pred --------------------------------------C-----------------------------------------
Confidence 0
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.-...+|.+|.+.|.++.|+|.+..+|++|+.|+++
T Consensus 335 --------------------------------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 335 --------------------------------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTV 370 (423)
T ss_pred --------------------------------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeE
Confidence 001235667888899999999888899999999999
Q ss_pred EEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 872 QIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 872 ~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
++||+++.+ .+..+.+|.+.|.++.|+ ++..|+|||.|.+|+|+.-.
T Consensus 371 klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999876 899999999999999997 56799999999999998654
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=245.67 Aligned_cols=286 Identities=17% Similarity=0.270 Sum_probs=236.7
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
..+.|.+++|+|...+=++.+..-.+.||+.... ..... +. .....+++++|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence 4578999999997776555555566777765321 11110 11 15678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
|+++|+|. .|.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888788899999999999999999999999999999999999999988877899999999999
Q ss_pred EEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee
Q 001318 896 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
+|+|-. ..++|||.||+|++||+.... ........| .+|..+.|-|.|..+|++....|+|||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999864 588999999999999998743 233344434 37899999999999999999999999999766554
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.... .|...|+|+++..|++.|++|+.|+.|+|||+.+.+.+..+. .+.. |. +++-+| |+..++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 4432 489999999999999999999999999999999999998887 4443 44 888888 568999999
Q ss_pred cCCcEEEEeccCCC
Q 001318 1055 SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1055 ~dg~v~vW~~~~~~ 1068 (1101)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887655444
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=222.89 Aligned_cols=277 Identities=16% Similarity=0.235 Sum_probs=230.7
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
.+.+|...|.+++|+-+|. .|++|+.|+++.+|++..++.... ..+|.+.|..++|++... ..+++++.|.+|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 4678999999999999999 799999999999999998866654 468999999999987654 68999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
||.+..++.......... ..+.|+|+|+++++++.|..|.+.|.++.+.....+...
T Consensus 92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~- 148 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF- 148 (313)
T ss_pred EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence 999998877655443332 235677777899999999999999999988777665432
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.++-++|+-++.+++.....|.|.|...... +.+..+
T Consensus 149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si---------------------------------------- 185 (313)
T KOG1407|consen 149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI---------------------------------------- 185 (313)
T ss_pred --eeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence 4677899888888777777788887764322 111100
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 186 -------------------------------------------------------------------------------- 185 (313)
T KOG1407|consen 186 -------------------------------------------------------------------------------- 185 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
..|.....|+.|+|+|+++|+|+ |..+.+||+...-|.+.+.
T Consensus 186 -------------------------------------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 186 -------------------------------------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred -------------------------------------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 01677788899999999999999 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
.+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||-++.|.
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence 9999999999999 99999999999999999999999888877 788999999999999999888763
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-27 Score=236.14 Aligned_cols=258 Identities=16% Similarity=0.287 Sum_probs=205.8
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
+......+-|.+.|.++... +++ +.+|+.||.++|||... +... .+.||.++|..++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~G-k~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKG-KSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCC-ceEE-------------------EEecCCcceeeeE
Confidence 44455677899999999998 554 99999999999999874 4433 3889999999888
Q ss_pred EecCC---CeEEEEEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-----
Q 001318 415 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 485 (1101)
Q Consensus 415 ~spdg---~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----- 485 (1101)
|--.. ..+++++.|.++++|.++.++.. .....-.||...|-+++..++|. .+++|+.|.+|+||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 86533 35999999999999999877643 22223459999999999999999 799999999999999321
Q ss_pred --------------------CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeE
Q 001318 486 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 486 --------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 545 (1101)
+.++-++.||..+|.++.|.. ...+++++-|.+|+.||+.+++....+...
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ 300 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------ 300 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC------
Confidence 234567889999999999954 358999999999999999997766544332
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEcc-CCCEEE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 621 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 621 (1101)
..+.++.++|..++|++|+.|..|++||.+++. ..+.+.+| ...|.++.|+| +..+|+
T Consensus 301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 256677778888899999999999999998764 33445444 55899999999 667889
Q ss_pred EEeCCCcEEEEEecCcccccccc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+|+.|+++++||+++.+..+..+
T Consensus 363 S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred EEecCCeEEEEEeccCCCcceee
Confidence 99999999999998774344333
No 75
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.9e-28 Score=245.77 Aligned_cols=261 Identities=18% Similarity=0.279 Sum_probs=213.5
Q ss_pred CCCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCC
Q 001318 331 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 409 (1101)
Q Consensus 331 ~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (1101)
.+.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++..++... ..++.|-.+.
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~ 221 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN 221 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence 3344555555555 9999999999999764 9999999999999998776221 1157888899
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
|+.+.|.++++++++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|++||+..+.|.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence 9999999999999999999999999999876554 7999999999999998776 5999999999999999999998
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+++- ....+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+.+|
T Consensus 297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-----------------
Confidence 8765 23445555542 2578999999999999999988777766654 56666655555
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
..+++++.|.++.+.|+++.+....+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++..
T Consensus 354 ----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~ 423 (459)
T KOG0288|consen 354 ----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEK 423 (459)
T ss_pred ----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEE
Confidence 4688889999999999999998888865432 234788999999999999999999999999988 4443
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.6e-27 Score=240.32 Aligned_cols=268 Identities=18% Similarity=0.255 Sum_probs=213.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeee-cCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.-.|.-.|+||+++||+++ ..+++.|++|.=|++.+++.... .++--+ +.....+.+... .+|...|.+++.|+||
T Consensus 138 ~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDG 214 (479)
T ss_pred eccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEcCCC
Confidence 4459999999999999997 99999999999999999986521 000000 011122222222 4899999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-||.+.|
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999999999999988666 5899999999999987666 58999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.... -...+-.|+.|+++++|++.. +....+.++...+.+++|-.+. .|++|
T Consensus 290 ~~IdaL~--reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~----------------------HfvsG 344 (479)
T KOG0299|consen 290 LGIDALS--RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE----------------------HFVSG 344 (479)
T ss_pred eeechhc--ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc----------------------ceeec
Confidence 9987532 224555556999999999943 4445556666666666665544 49999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCC----------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+.+|.|.+|++...+++.+.....+ ...|++++..|...++++|+.+|.|++|.+..+.+.+
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 9999999999999998877753211 1267899999999999999999999999998885443
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1e-26 Score=219.95 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=197.4
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
+.+.+|+.+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|+|++.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44668999999999999999 699999999999999999999884 8999999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-----cCCCcEEEEeCC-------CC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG 486 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-----~~d~~i~iwd~~-------~~ 486 (1101)
.++|++|+.|.++++||+++|+++... .-..+|..+.|+.+|.. ++.+ +..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 999999999999999999999988743 24678999999999993 3333 234679999998 45
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~------------- 202 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR------------- 202 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-------------
Confidence 567777778899999998654 4799999999999999999875543 335566666666666655
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
.++++++.|.+-++||..+.+.+.++.... +|++.+++|-...++.|+.
T Consensus 203 --------T~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 203 --------TYFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --------ceEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCC
Confidence 589999999999999999999999987543 5999999998877777764
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1e-26 Score=219.34 Aligned_cols=278 Identities=17% Similarity=0.210 Sum_probs=226.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|...|.+++|+.||..||+|+.|+++.+|+++..+.. ......+|.+.|-.++|.|.... .+++++.|++|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 47789999999999999999999999999999999987433 33457799999999999998777 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+++++++.......+.+. ++| +++|.+++.++.|..|.+.|.++.+.....+.. ..+..
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne---------------- 152 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNE---------------- 152 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhccc-ceeee----------------
Confidence 9999999998876666666 555 566789999999999999999876554432221 12333
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
++|+.++++++.....|.|.|.....-+++..++.|. ..+.|+.|+|+|+++|+|+.|-.+.+||+... -+.
T Consensus 153 -----~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 153 -----ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred -----eeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 3444455677777778999999999999999998775 46889999999999999999999999998643 222
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
+.+.
T Consensus 225 R~is---------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 225 RCIS---------------------------------------------------------------------------- 228 (313)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.++-+|+.+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.++.|
T Consensus 229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566788888888888888888 7888888999999988887 788899999999 88999998865
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-27 Score=222.26 Aligned_cols=287 Identities=18% Similarity=0.261 Sum_probs=225.5
Q ss_pred EEEEEec--CCCeEEEEEec-----CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCC
Q 001318 349 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 420 (1101)
Q Consensus 349 ~~~~~sp--dg~~llatg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 420 (1101)
.++.||| +++..+|+++. .|.+.|-++..++.+. +++.++ -.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEeee---------------cccceeEeeecCCCcc
Confidence 5678888 45533444433 5789999987555443 233232 256899999999 466
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
.+++++.||+++|||..- .-.++..++.|...|.++.|++-.++ .++++|-|++|++|+...++.+++|.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788899999999999543 33455578999999999999998877 677779999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
...|+|... +++++++.|+++++||++.......+..|...+.++.|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999987644 6999999999999999998877777888887777777766554 6789999
Q ss_pred CCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 581 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 581 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
.|+.|++||++.- .++..+.+| .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 9999999999875 456666555 44799999999 567899999999999999987766777766665432211
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+.. ..+...+++.+.|..+.+|+-
T Consensus 285 -----------------------------------Dws-~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 -----------------------------------DWS-LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -----------------------------------ccc-cccCceeeecccccceeeecc
Confidence 111 125788999999999999973
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-27 Score=261.97 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=205.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe------------------------------ee-------
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------RN------- 385 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~------------------------------~~------- 385 (1101)
.|.+.|+++.||+||+| ||+|+.|+.|+||.+...+.... ..
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 59999999999999996 99999999999999876111000 00
Q ss_pred ----eeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc
Q 001318 386 ----FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 461 (1101)
Q Consensus 386 ----~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s 461 (1101)
..+.+..-.-.+.+...+.||.+.|..|+||.++ +|++++.|.+|++|++...++++ ...|.+-|+||+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence 0000000001122234588999999999999755 88999999999999999998887 33599999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCC
Q 001318 462 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 541 (1101)
Q Consensus 462 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 541 (1101)
|-+.+ ++++|+-|+.|+||++...+.+.-...+ .-|+++||. +||+..+.|+.+|.+++|+....+....+..+
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-- 492 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-- 492 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence 97776 8999999999999999888776655534 789999985 56799999999999999998875544332211
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 620 (1101)
-.+.+.. ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+++......-....|+.||++|
T Consensus 493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 0000000 01134444444322 35888899999999999999999999877666666788999999999
Q ss_pred EEEeCCCcEEEEEecCc
Q 001318 621 AVSTNDNGIKILATSDG 637 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~ 637 (1101)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
No 81
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-25 Score=236.72 Aligned_cols=510 Identities=17% Similarity=0.205 Sum_probs=333.0
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+ ....+... .+..|+.+..+.++
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g-~~q~LSap--------------e~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRG-HSQKLSAP--------------EIDVGGGNVIVECL 134 (1012)
T ss_pred ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCC-cccccCCc--------------ceeecCCceEEEEe
Confidence 4556788999999999988776 58999999999999988732 22222111 23344455578888
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 647 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 647 (1101)
.|+|...-++..+..|++++||+.+++.+..+.+|.. .|.++.|+.||.+|++.+.|..|+|||.+...+.++..++|
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d--~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD--KVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCCch--hhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 8999888888888999999999999999998886654 79999999999999999999999999999876788887877
Q ss_pred cccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCC----CcceeeeccccCC
Q 001318 648 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE 723 (1101)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~~w~~~~~~~ 723 (1101)
...... .+.+.-+-..|++.+.+ ..+++||......
T Consensus 213 ~~~rds----------------------------------------Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 213 GGMRDS----------------------------------------RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccchhh----------------------------------------eeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 654110 11111122344433333 4678888876444
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccc-------------------------------
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTE------------------------------- 771 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~------------------------------- 771 (1101)
...-..+. ....|.--.|.||.++|+.++. +..+..+++...+
T Consensus 253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~ 327 (1012)
T KOG1445|consen 253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG 327 (1012)
T ss_pred cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence 33322221 2334555567888877666554 5667766654320
Q ss_pred ------------------------------------------------------------cC--------------C---
Q 001318 772 ------------------------------------------------------------RN--------------S--- 774 (1101)
Q Consensus 772 ------------------------------------------------------------~~--------------~--- 774 (1101)
.. +
T Consensus 328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~ 407 (1012)
T KOG1445|consen 328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK 407 (1012)
T ss_pred hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence 00 0
Q ss_pred -------------------------C--Ccee--eeecC-----------------------------------------
Q 001318 775 -------------------------S--GKAT--ASVAP----------------------------------------- 784 (1101)
Q Consensus 775 -------------------------~--~~~~--~~~~~----------------------------------------- 784 (1101)
. .... ....+
T Consensus 408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~ 487 (1012)
T KOG1445|consen 408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS 487 (1012)
T ss_pred cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence 0 0000 00000
Q ss_pred ---------------------ccccCCCccccc------------------------------------cccC-CCCCCC
Q 001318 785 ---------------------QLWQPPSGIMMT------------------------------------NDVT-DSNPEE 806 (1101)
Q Consensus 785 ---------------------~lw~~~~g~~~~------------------------------------~~~~-~~~~~~ 806 (1101)
.+..+.-|+.+. .... ..+|.+
T Consensus 488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks 567 (1012)
T KOG1445|consen 488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS 567 (1012)
T ss_pred CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence 000000000000 0000 000110
Q ss_pred -------------CeeEEEEecCCCEEEE---EeCCeEEEEECCCCcee-e-EecC--CCCCeEEEEEecCCCcEEEEEe
Q 001318 807 -------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFKTM-A-TFMP--PPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 807 -------------~i~~~~~s~dg~~la~---~sdg~i~vwd~~~~~~~-~-~~~~--~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
+-.+=-|..+.+++|+ |+.|.|-||++.....+ - .+.+ ....|+.+.|.|.|...||+++
T Consensus 568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ 647 (1012)
T KOG1445|consen 568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT 647 (1012)
T ss_pred hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence 0011123345556665 33689999999753222 1 1211 2456999999999999999999
Q ss_pred ccCeEEEEEeecce-------EeeeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 867 DDSSIQIYNVRVDE-------VKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
+||.|++|.+..+. .-..+.+|...|+++.|+|- ...|++++.|.+|++||+.++.. ...+.+|..
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd- 721 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD- 721 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence 99999999997643 33567889999999999985 57899999999999999998653 444567764
Q ss_pred CCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----eEEEEEcCC
Q 001318 939 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1013 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----~v~vwd~~~ 1013 (1101)
.|..++|||||+.+|+ +.|++|++|+..+++..-.-....-...-..+.|.-||+++++.+.|. .|.+||..+
T Consensus 722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 8999999999999999 899999999998876532211101123345677888999988877665 489999876
Q ss_pred cee--eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCCC
Q 001318 1014 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1077 (1101)
Q Consensus 1014 ~~~--~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~~ 1077 (1101)
-.. +.+.. .... -.++--.|.++.+-++++|-.|..|+++.+......+....+|
T Consensus 800 l~~~pl~t~~--lDva-------ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 800 LDLRPLYTQV--LDVA-------PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred ccCCcceeee--eccc-------CccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence 442 22211 0000 1122334556455678999999999999998877555544444
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.2e-27 Score=228.67 Aligned_cols=247 Identities=13% Similarity=0.213 Sum_probs=201.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
|...|+.+.|+|....|++++.|+++++||+........ ++.......|.++.|+|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-----------------------~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-----------------------FKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-----------------------HHHhhccceeeeEeecCC
Confidence 889999999999999999999999999999854321100 000114678999999999
Q ss_pred CCEEEEEeC-CeEEEEECCCCceeeEe---cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCccc-
Q 001318 817 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSK- 890 (1101)
Q Consensus 817 g~~la~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~- 890 (1101)
|.+|++|.| .++++||+.+.++...- .+|.+.|+++.+++ .+++.++|+.||.|++||--+++|+.++ .+|.+
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999996 68999999998886553 45788999999999 8999999999999999999999999888 45654
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 968 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~ 968 (1101)
.|.+..|..+|+++++.|.|.++++|++.++.....-.-.-..|.+ .--+...|.....+++.- ..+.++-||..
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeecccc
Confidence 6899999999999999999999999999997643322111111211 123456788888887773 45689999999
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
++..+..+.. +|.+.+..+.-||.+.-+++++.|..+++|--
T Consensus 384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 9988877765 89999999999999999999999999999964
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5e-27 Score=265.10 Aligned_cols=304 Identities=18% Similarity=0.250 Sum_probs=240.1
Q ss_pred cccceEEEEEcCCCceEEeee--cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 737 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
+...|.++..+|+|..+++++ .|+.++||+...-.. ....++..-...+ .....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l---~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL---CTMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh---eeeccccCceeEEEEC
Confidence 456689999999999999999 789999998743210 0111222111111 1112389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC------------------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 815 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+||++||+|+ |+.|.||+... ++++..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 67899999762 236677899999999999999 999999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
..+.+++.++.+|.+.|..+.|.|-|++|||-+.|++|+||++......+ .+..+.++.........+.|||||.+|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999976643222 2222223333334678999999999999
Q ss_pred E--EeC---CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001318 956 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 956 ~--~~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-----dg~------------~l~s~s~dg~v~vwd~~~ 1013 (1101)
+ +.+ ..+.|.+-.+-+.-..+. ||.+++.+++|+| ..+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 8 333 368888888777766666 8999999999998 111 578999999999999988
Q ss_pred ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1014 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.+++..+. .+. + -..+.++|+| ||-.|.++|.||+|.+..++..+
T Consensus 314 ~RPl~vi~---~lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH---NLF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh---hhh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 87775443 111 1 2345999999 78999999999999999998876
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=259.89 Aligned_cols=243 Identities=19% Similarity=0.334 Sum_probs=212.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+...+.|..|+ ++. +.+|+.|.+|++||..++..+.. .+.||.+.|++++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~~--~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DGF--FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cCe--EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467889999999 443 99999999999999999988763 388999999999999989999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
++|+.|.++++||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 68899999999998643 68899999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
..+ +.++++|+.|++|++||+.+.+++..+.+|...|+++.+... +.+++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeeeec
Confidence 864 469999999999999999999999999999999998876543 359999999
Q ss_pred CcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 583 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 583 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
++|++||+++. +++.++.+|.. .+.+ +...+++|++++.|++|++||..++ ++.+.+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeee
Confidence 99999999999 99999987765 3433 3446789999999999999998887 444443
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6e-27 Score=257.92 Aligned_cols=273 Identities=15% Similarity=0.241 Sum_probs=213.5
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeecccccc---------------CCCCc---------eee-----------
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK---------ATA----------- 780 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~---------~~~----------- 780 (1101)
.|.+.|.++.||+||++|+++|.|+.|+||.+..... ...+. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999876210 00000 000
Q ss_pred eecCccccCCCcc---ccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec
Q 001318 781 SVAPQLWQPPSGI---MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 781 ~~~~~lw~~~~g~---~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 856 (1101)
... .+.+..... .....+ .+|...|..+.||.++ +|++++ |.+|+||++...+|++.|. |..-|+|++|+|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred Ccc-ccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 000 011111110 011122 3599999999999876 666777 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
.|.+|+++|+-||.||||++...+.+.-.+.+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999887765544444 78999999999999999999999999999987766655555555554
Q ss_pred CCCCCCeEEEEcCCC--cEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 937 PTAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg--~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.....|+.+.|.|.. +.|+++.|.+|+|||..+...+..+..-.....-....|+.||++|+++++|..|+||+....
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 444579999998754 377789999999999988888877774333455677899999999999999999999998543
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=240.36 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=234.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|+.+.|.++++ .+++.+.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 478899999999999999999999999999999998876 334447888899999999999999 78999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
++.+.+...+|.||++.|+++.|.... ..+++|+.|.+|+.||+....+..+.-. ...+..+..+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence 999999999999999999999885443 3499999999999999988555443221 1222222221
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..|.+.+.|.++.+.|+.+. +..
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 2347788899999999999999999988665 4999999999999999999999999998765 221
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+
T Consensus 377 ~~~----------------------------------------------------------------------------- 379 (459)
T KOG0288|consen 377 QTF----------------------------------------------------------------------------- 379 (459)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
+..|. .
T Consensus 380 -------------------------sA~g~-----------------------------------------------k-- 385 (459)
T KOG0288|consen 380 -------------------------SAEGF-----------------------------------------------K-- 385 (459)
T ss_pred -------------------------ecccc-----------------------------------------------c--
Confidence 10110 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
.....+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367789999999999999 99999999999999888876544 599999999 89999999999999999
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5e-27 Score=220.50 Aligned_cols=253 Identities=13% Similarity=0.255 Sum_probs=212.0
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+.-.+.+..++|++.....+++++.||.++|||...... +...++.|..+|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 34445557789999999999888899999999999999543321 122588999999999999
Q ss_pred c-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 417 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 417 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+ +++.++++|.|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 77788889999999999998877665 79999999999999998777 8999999999999999875555558899
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
...+.++.|+. .+...+++|+.|+.|+.||++..+ ++..+.+|+-.|..+.|||... .
T Consensus 190 ~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~ 248 (311)
T KOG0277|consen 190 NSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S 248 (311)
T ss_pred cceeEeecccc-cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence 99999999975 455799999999999999999854 4567888888899999888765 5
Q ss_pred EEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEe
Q 001318 575 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 634 (1101)
.|++++.|-+++|||...+ ..+.+...|.. .+..+.|++ ++.++|+.+.|+.++||+.
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 6899999999999999854 34555555544 688899998 7889999999999999984
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=236.73 Aligned_cols=247 Identities=21% Similarity=0.260 Sum_probs=197.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
...+.|++++|||...+=+|+.+. -.|.||+..+..... .+......|+++.|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence 356789999999976554444332 689999988776554 244556789999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
|+|...|.|+|+|+++...++ .+.+|..+|..+.|+|+++. .+++|++|+.+++||+.+...+..+.+|++.|.+.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977644344 58899999999999999887 89999999999999999999877999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
+|++. ++++++||+.||.|++||++.......--.|+.+|..+.+-|.|. .+++++ .
T Consensus 160 ~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G 216 (487)
T KOG0310|consen 160 DISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G 216 (487)
T ss_pred ccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence 99764 448999999999999999998754443344566666666666654 566665 4
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..|++||+.+|........ .|...|+|+.+..++..|++++-|+.+++||+.+-
T Consensus 217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 5899999986654433332 23457999999999999999999999999996543
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-25 Score=216.52 Aligned_cols=289 Identities=15% Similarity=0.187 Sum_probs=228.5
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....|.++.|+.+|..+++++.|..+++||... |..+... .. +...+..++|...
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~ti-~s--kkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKTI-NS--KKYGVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeEe-ec--ccccccEEEEecC
Confidence 457899999999999999999999999998743 2222111 11 4556788888877
Q ss_pred CCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee
Q 001318 817 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 817 g~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
...+..++ |.+|+..++.+.+.++.|.||...|+.++.+| .+..+++++.|++|++||++..++...+.....+
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-- 144 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence 77666665 68899999999999999999999999999999 7789999999999999999988887777544443
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~ 972 (1101)
.++|.|.|-++|++.....|++||++.-.+..........+. ......+.|||||+++..+ ..+.+.+.|.-+|..
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 479999999999998888999999988655444444443322 2478999999999999985 778899999999998
Q ss_pred eeeccCCCCCC-CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 973 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 973 ~~~~~~~~h~~-~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
+.++....... --.+.+|+||++++++|+.||+|.+|++++|+.+.+++. +. ...+. .+.|.| ++..
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~----~~---~~~~~--~~~fnP---~~~m 289 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG----PN---GGPVS--CVRFNP---RYAM 289 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC----CC---CCCcc--ccccCC---ceee
Confidence 88877433222 236788999999999999999999999999999998882 21 22244 678988 4555
Q ss_pred EEecCCcEEEEeccCCC
Q 001318 1052 LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~~~ 1068 (1101)
-++.+..+.+|-....+
T Consensus 290 f~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDEDA 306 (311)
T ss_pred eeecCceEEEEeccccc
Confidence 55567889999887654
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-26 Score=260.87 Aligned_cols=280 Identities=20% Similarity=0.307 Sum_probs=225.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
++..|.++..+|||.. +|||+ .||.++||+.+.--... .-++.. .+........|.+.|.|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 4567999999999996 99999 89999999975421100 000100 12222346789999999999999999
Q ss_pred EEEEEcCCeEEEEEccC----------C-----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 422 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 1 11235567899999999999999999 8999999999999999999
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC------CCceeEEEEccCCc-------
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT------- 553 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~------- 553 (1101)
+.+.++.+|.+.|..+.| ++-|++|++-+.|++|++|+..+-+....+..+ ...+..+.|+|||.
T Consensus 162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 999999999999999998 566799999999999999997775555555443 33678899999998
Q ss_pred -------------------eEEeccccCceeEEEEcCC-------------CC----EEEEEeCCCcEEEEECCCCceeE
Q 001318 554 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT 597 (1101)
Q Consensus 554 -------------------~~~~~~~~~~~~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~ 597 (1101)
..+.||.. ++.++.|+|. .+ .+++|+.|++|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 33456666 8899999872 11 57779999999999998888776
Q ss_pred EEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 598 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+..-. ...|.+++|+|||..|++++.||+|.++..+..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 654222 236899999999999999999999999988754
No 91
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2e-25 Score=251.72 Aligned_cols=265 Identities=15% Similarity=0.205 Sum_probs=202.6
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-C
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-d 816 (1101)
-..|....+++++..+++++.+.....|+...+. ..++..+.|+.........+|.+.|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455566677787778888888888888753221 11233344443321111234999999999999 8
Q ss_pred CCEEEEEe-CCeEEEEECCCC-------ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc
Q 001318 817 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 888 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 888 (1101)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 3467789999999999999944579999999999999999999999999999
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E----eCCeEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 963 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~----~d~~v~ 963 (1101)
...|.+++|+|+|.+|++++.|++|++||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998653 222333432 23456788998888776 3 368999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 99998765322221112345666778999999999887 59999999999998876544
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=8.8e-26 Score=254.22 Aligned_cols=287 Identities=18% Similarity=0.271 Sum_probs=238.4
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
.|...|.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|.+++|..-+. ++++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 467789999998 77899999999999999999876652 3889999999999987555 79999999999999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+|.+.+++.+|...|.++... ..++++|+.|.+|++|++.++.....+.+|...|.++.+.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 999999999999999988742 2578899999999999999988888888888888877765
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.++++|+.|++|++||+.+++++..+.+|.+ .|.++.+... .++++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 25799999999999999999999999997654 8989877665 899999999999999998774344333
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
.+|..
T Consensus 410 ~~h~~--------------------------------------------------------------------------- 414 (537)
T KOG0274|consen 410 QGHTS--------------------------------------------------------------------------- 414 (537)
T ss_pred cCCcc---------------------------------------------------------------------------
Confidence 32221
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
T Consensus 415 -------------------------------------------------------------------------------- 414 (537)
T KOG0274|consen 415 -------------------------------------------------------------------------------- 414 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
-+..+ ...+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||.+++||+.++++.
T Consensus 415 --~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 415 --LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred --ccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 11111 12445778887 99999999999999999998 67888888876 247888999999999999999988
Q ss_pred eeecCcc
Q 001318 883 SKLKGHS 889 (1101)
Q Consensus 883 ~~l~~h~ 889 (1101)
+.+-.+.
T Consensus 488 ~~l~~~~ 494 (537)
T KOG0274|consen 488 RTLLSTD 494 (537)
T ss_pred hhhhhcc
Confidence 8774443
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-25 Score=216.63 Aligned_cols=247 Identities=15% Similarity=0.258 Sum_probs=206.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEeecce
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 880 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~ 880 (1101)
....|.++.|+++|.++++++ |..++|||..+++.++++..+.-.+..++|.. ....+..++. |.+|+.-++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999988 5555555655 8899999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
.++.+.||...|++++.+|-+..++|++.|++|++||++..+.+... ... .-..++|+|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecC--------CCcceeECCCCcEEEEecCC
Confidence 99999999999999999999999999999999999999975433222 111 22568999999999996444
Q ss_pred -eEEEEEcCCc--eeeeeccCC-CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCcc
Q 001318 961 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036 (1101)
Q Consensus 961 -~v~vwd~~~~--~~~~~~~~~-~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1036 (1101)
.|++||++.. ....++... +-....+.|.|||||++|+.+...+.+++.|.-+|..+..+. ++.+..-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999764 223333332 346789999999999999999999999999999999988877 22233344
Q ss_pred ceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1037 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1037 ~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
++..+|+| |++++++|+.||+|.+|++.+++.
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcE
Confidence 57899999 799999999999999999999983
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.1e-27 Score=247.45 Aligned_cols=253 Identities=19% Similarity=0.258 Sum_probs=206.8
Q ss_pred CCCCcE---EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 344 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 344 h~~~v~---~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
|...|. .+..++.+...|.||+.||.|++|++........ .++ ...+..|.+.|..++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~-~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPY-IASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cch-hhhhhhhHhHHhhHHhhcCCC
Confidence 344444 4555544443599999999999999876543211 111 124788999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-cCCCCeEEEEEecCCCcEEEEeCCCC--ceEEE------
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQYI------ 491 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~------ 491 (1101)
.|+++|.|-+|++|+...+. .....++..|.+.|.|++. .++.. ++++||-|+.|.+||+.+| +.+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 2233468889999999999 66665 8999999999999999988 23332
Q ss_pred --ec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 --~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+. |+...|++++. .++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 23 78889999986 45567999999999999999999999988888888777777666664
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++++.||+|++||+...+++.++..|.. .|.++..+|+-.++++|+.||.|..=|+.+.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 799999999999999999999999987766 5999999999999999999999999888775
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.7e-26 Score=217.78 Aligned_cols=248 Identities=18% Similarity=0.217 Sum_probs=196.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+.|.+++|||....++++||-||+||+|+++...... .+....|.++|.+++|+.||..++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~ka~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------PKAQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------chhhhccCCCeEEEEEccCCceEE
Confidence 568899999999777788899999999999998742221 124678999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|+.|+.+++||+.+++... +..|.++|.++.|-+...+..|+|||.|++|+.||.+...++.++. -.+.++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 99999999999999996443 6789999999999887665589999999999999999999998887 566788775
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
.- ..+++.+..++.|.+|+++++....... .. .-+..+++++...+....+.|+-+|
T Consensus 164 v~----~pm~vVata~r~i~vynL~n~~te~k~~--~S-----------------pLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 164 VL----YPMAVVATAERHIAVYNLENPPTEFKRI--ES-----------------PLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred cc----CceeEEEecCCcEEEEEcCCCcchhhhh--cC-----------------cccceeeEEEEEecCCceEeeeecc
Confidence 42 1478888899999999997654332211 10 0112556666666666789999999
Q ss_pred cEEEEECCCC--ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 584 SIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 584 ~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+-+..++.+ +.-.+++.|.. .-.|++++|+|.-..|++.+.||++.+||-..
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 9999999886 44445555542 23578899999888999999999999999643
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.2e-26 Score=234.82 Aligned_cols=297 Identities=16% Similarity=0.231 Sum_probs=226.0
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.++++.|.|.++++|+-|..|++||++.-..+. +..+..... ....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~--E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPC--ETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCcc--cccccceeeec
Confidence 4478899999999999999999999999999986432110 001111111 45679999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeE------------ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 880 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~- 880 (1101)
+.|..|++.+ ....+|+|....+.... -+||...++|.+|+|.....+.+++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 68899999765444332 357888999999999878899999999999999997643
Q ss_pred Eeeee-----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 881 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 881 ~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.+..+ .+..-+++.++|++||+++|.|..||.|.+|+........ .+.+...|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22222 2344578999999999999999999999999985533322 2333333332 24799999999999999
Q ss_pred E-EeCCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CCeEEEEEcCCceeeeecCCCcccC
Q 001318 956 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1027 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~ 1027 (1101)
+ +.|+++++||+...+ ++..+..-....+-+.++||||.++|++|+. -|++++||..+.+.+.++.+.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 999999999998754 4444432223556788999999999999873 578999999999999988733
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1028 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1028 ~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+ ...+.+.|+| .=+.|.+|+.||+++|+--+
T Consensus 457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred -C-----ceEEEEeecc-hhhheeeecCCCceEEEECc
Confidence 1 3344799999 45778888889999986543
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=214.80 Aligned_cols=305 Identities=17% Similarity=0.238 Sum_probs=223.7
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
+|...|++++|+.||++|++.+.|++|++|++.+-.. +.|...
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~-------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI-------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh--------------------------------
Confidence 3445799999999999999999999999999876311 111110
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-Cce
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAI 761 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~ 761 (1101)
...+ ..+..+.++|+||-+.++.... ...
T Consensus 127 ----------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 127 ----------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred ----------------------------------------------hccc----cCCCceEEEECCCcceEEEEEccCCE
Confidence 0000 1235577899999876665554 578
Q ss_pred EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceee
Q 001318 762 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 762 i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~ 840 (1101)
+++|.+...+- |...-. ..-||-. .. . ..|.-.+..+-...++++|++++ |.+|.+|+++ |+.+.
T Consensus 157 l~vyk~~K~~d---G~~~~~--~v~~D~~--~f----~--~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 157 LCVYKLVKKTD---GSGSHH--FVHIDNL--EF----E--RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEeeeccc---CCCCcc--ccccccc--cc----c--hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 89988754321 111110 0112200 00 0 12667788888889999999999 8899999998 88888
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---c-----eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~ 912 (1101)
.+......-...+.|| +|++||+++-.--|+||.+-- | ..+..++||...|..++||++.+.++|++.||+
T Consensus 223 ~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 8887777778899999 999999999888999998742 2 234567999999999999999999999999999
Q ss_pred eEEEeCCCcccccc--eeeecCCCC-CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEE
Q 001318 913 LCVWSSDGWEKQKN--RFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 989 (1101)
Q Consensus 913 v~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~ 989 (1101)
++|||++-.-.... ..++..... ....+....+.++|.|+.||++....+++|..++++....+. +.|...|++++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is 380 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSIS 380 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEE
Confidence 99999864321111 112211100 011134458999999999999999999999999998877765 47899999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEEc
Q 001318 990 FSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 990 ~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
|++||+++++++ |..++|+.-
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ecCCCcEEeeec-ceeeeeecC
Confidence 999999999986 788888763
No 98
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.8e-25 Score=248.70 Aligned_cols=263 Identities=13% Similarity=0.129 Sum_probs=198.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 422 (1101)
+-..|....+++|+.. +++++.+..+..|+...+..+.. .-..+........+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4467778888899775 77778888888998766543211 1011111111235789999999999999 89999
Q ss_pred EEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 423 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1234468899999999999998644 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|++ ++.+|++++.|++|++||++++.....+..|... ....+.|.+++..+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------------------~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------------------KSQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------------------cceEEEEcCCCCeEEE
Confidence 99999964 5689999999999999999987766655555432 1222334455556666
Q ss_pred Ee----CCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 579 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
++ .|+.|++||+++.. ++.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 54 47999999998754 33333322 222355567899999999887 5999999999887
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=216.73 Aligned_cols=248 Identities=16% Similarity=0.320 Sum_probs=212.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|++.|+.++-..... ++.+++.|.+.+||.++++.++.. +.||.+.|.++.|++.+.
T Consensus 144 ~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred hcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccc
Confidence 446999999999887776 799999999999999999999984 899999999999999999
Q ss_pred eEEEEEcCCeEEEEEc------cC------------------------------Ccee-eeeeeeccccCCeeEEEEcCC
Q 001318 421 LFGVAYSRHIVQIYSY------HG------------------------------GDEV-RQHLEIDAHVGGVNDIAFSHP 463 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~------~~------------------------------~~~~-~~~~~l~~h~~~V~~~~~s~d 463 (1101)
++++++.|++..||.. .. +..+ .+...|.+|.+.|.++.|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 9999999999999961 11 0011 134568899999999999999
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCc
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRW 542 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~ 542 (1101)
|+ -+++++.|.+..+||+++|+.+..+.||....+.++-++. .+++++.+.|.+.++||++.. ..+..|.+|...
T Consensus 284 g~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 284 GQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred cc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 99 5899999999999999999999999999999998887654 478999999999999999853 334578888888
Q ss_pred eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEE
Q 001318 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLA 621 (1101)
Q Consensus 543 v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 621 (1101)
|++..|..+.+ +++|+.|.+|++||+++.+ ++.++.... .++.++.+..+..++
T Consensus 360 VTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 360 VTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIA 414 (481)
T ss_pred eeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEE
Confidence 88888887775 9999999999999998754 566666443 488899999999999
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
.--++..|++||+...
T Consensus 415 iPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGN 430 (481)
T ss_pred eccCCceEEEEecCCC
Confidence 9999999999998654
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.7e-25 Score=211.83 Aligned_cols=314 Identities=16% Similarity=0.211 Sum_probs=213.0
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 475 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 475 (1101)
.++++|.+.|++++||.||++||+++.|++|+||+++... +++... .-+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccC
Confidence 3699999999999999999999999999999999998632 122111 1234678999999886 56666667
Q ss_pred CcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 476 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
.++++|.+...+. | ..+...+- ||--.-. ..|...+..
T Consensus 155 ~~l~vyk~~K~~d-----G-~~~~~~v~---------------------~D~~~f~-----~kh~v~~i~---------- 192 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-----G-SGSHHFVH---------------------IDNLEFE-----RKHQVDIIN---------- 192 (420)
T ss_pred CEEEEEEeeeccc-----C-CCCccccc---------------------ccccccc-----hhcccceEE----------
Confidence 7788887543221 0 00111111 1100000 000111111
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+-+..++.++++++.|..|.+|+++ |+.+..+..... .-+..+.||+|+++++++..-.|++|.+-
T Consensus 193 -----------iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 193 -----------IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred -----------EeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 1222233578889999999999997 888888764432 35668999999999999999999999763
Q ss_pred CccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCccee
Q 001318 636 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 715 (1101)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 715 (1101)
-++ .|.-. ...++
T Consensus 259 f~k------dG~fq-------------------------------------------------------------ev~rv 271 (420)
T KOG2096|consen 259 FTK------DGTFQ-------------------------------------------------------------EVKRV 271 (420)
T ss_pred ecc------Ccchh-------------------------------------------------------------hhhhh
Confidence 221 00000 11122
Q ss_pred eeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccc-ccCCCCceeeeecCccccCCCccc
Q 001318 716 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGIM 794 (1101)
Q Consensus 716 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~lw~~~~g~~ 794 (1101)
+.+ .+|...|..++|+++.+++++.+.||.++|||.+-. ....+.+.+.. |.
T Consensus 272 f~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~- 324 (420)
T KOG2096|consen 272 FSL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS- 324 (420)
T ss_pred hee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC-
Confidence 222 349999999999999999999999999999998532 11111111111 11
Q ss_pred cccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEE
Q 001318 795 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQI 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~v 873 (1101)
..+. ...+....++++|.|+.||......+++|..++++...+++ .|...|.+++|++ +|+++|+++ |..+++
T Consensus 325 --~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 325 --APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRV 398 (420)
T ss_pred --cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeee
Confidence 0111 13344558999999999999999999999999988776664 5788999999999 999999886 678888
Q ss_pred EE
Q 001318 874 YN 875 (1101)
Q Consensus 874 wd 875 (1101)
+.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 75
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-26 Score=242.70 Aligned_cols=373 Identities=16% Similarity=0.189 Sum_probs=270.0
Q ss_pred CCCCeE---EEEEec-CCCeEEEEEcCCeEEEEEccCCcee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 406 PGVSVN---RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 406 h~~~V~---~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
|...|. .+..+. .++||.+||.||.|++|++...... .....++.|.+.|+.++...+++ .|+++|.|.+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 444444 444444 7788999999999999998754321 12346888999999999999998 69999999999
Q ss_pred EEEeCCCC--ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 479 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 479 ~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
++|+...+ -++.++..|.+.|.|+++. ..+..++++|+.|+.|.+||+.++.....
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~--------------------- 155 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV--------------------- 155 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh---------------------
Confidence 99999887 6778899999999999973 45558999999999999999987532100
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
++. ..+..=++.. +....|++++..+.|..+++|+.++.+++||.++
T Consensus 156 ----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 156 ----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred ----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 000 0000001100 2334688999999999999999999999999887
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
.++.++ +
T Consensus 203 ~~kimk-L------------------------------------------------------------------------ 209 (735)
T KOG0308|consen 203 CKKIMK-L------------------------------------------------------------------------ 209 (735)
T ss_pred ccceee-e------------------------------------------------------------------------
Confidence 732211 1
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 210 -------------------------------------------------------------------------------- 209 (735)
T KOG0308|consen 210 -------------------------------------------------------------------------------- 209 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
. +|...|..+..++||..+++++ ||+|++||+...+|+.++..|...|.++..+| +-..+.+|+.||.|+.=|
T Consensus 210 ---r--GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 210 ---R--GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ---e--ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 1 1666677777778888888887 88899999998999999999999999999999 899999999999999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
+.+......+-....+|..+..+.+.+-+=+++.|+.|+-|.... ...+++.|.+..
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDF 340 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCc
Confidence 988432222223445677777764444445667899999997654 124455555555
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.+....+++... ...... +| ...|..-++-.|.+.+++-...|.+.+||+-.++.+..+.
T Consensus 341 ~~T~~~~~~~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred ccccCCCccccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 44555445554322 111111 12 4466666777899999999999999999998777665443
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.7e-25 Score=238.33 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=227.7
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
-+.|+..+ ++|+|. ...|++|+..+++.... ...+...|+++.|+++|.+||+|..+|
T Consensus 182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g 239 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG 239 (484)
T ss_pred HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence 35677444 366665 25899999999885542 333478999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE-ecCcccCeEEEeeeec
Q 001318 430 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK 507 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~ 507 (1101)
.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-- 310 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-- 310 (484)
T ss_pred eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence 99999999887666 5667 99999999998 34 689999999999999998877655 88999999999984
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe--CCCcE
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI 585 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i 585 (1101)
.++.++++|+.|+.+.+||....+....+..|...|..++|+|-.. ..|++|+ .|+.|
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI 370 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence 5668999999999999999988899999999999999999988765 5688854 79999
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEecCccccccccccccccccccCCCCCCccc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1101)
++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. ..+..+
T Consensus 371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------- 427 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------- 427 (484)
T ss_pred EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence 999999999998887544 49999999988777764 45678899987653 222222
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
.+|..+|..
T Consensus 428 -----------------------------------------------------------------------~gH~~RVl~ 436 (484)
T KOG0305|consen 428 -----------------------------------------------------------------------LGHTSRVLY 436 (484)
T ss_pred -----------------------------------------------------------------------cCCcceeEE
Confidence 238889999
Q ss_pred EEEcCCCceEEeeecCceEEeeec
Q 001318 744 LIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
++++|||..+++++.|.++++|++
T Consensus 437 la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 437 LALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEECCCCCEEEEecccCcEEeccc
Confidence 999999999999999999999986
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=225.68 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=224.4
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee--------------eee-ccccCCeeEEEEcCCCCe
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 466 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~~~~s~d~~~ 466 (1101)
....|.-+|.|++++||+++.++++.|++|.=|++.+++..+.+ ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 47789999999999999999999999999999999988743110 011 37889999999999999
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-... ..+++++.|++|++|+++....+.++-+|...|..+
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999995444 579999999999999999988888888888888877
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
....-++ .+-+|+.|+++++|++..... ..+.++. ..+-|++|-.+ ..+++|+++
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~eesq-lifrg~~--~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEESQ-LIFRGGE--GSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccce-eeeeCCC--CCeeeEEEecc-cceeeccCC
Confidence 7665554 344456999999999954433 3344333 35778888754 578999999
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|.|.+|++...+.+...-..|.....
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------ 373 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------ 373 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence 99999999776333222222211000
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcc
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 786 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~l 786 (1101)
. +...+...|++++..|...++++++.+|.+++|.+..
T Consensus 374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~----------------- 411 (479)
T KOG0299|consen 374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED----------------- 411 (479)
T ss_pred --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecC-----------------
Confidence 0 0011346899999999999999999999999998743
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 787 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 787 w~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|......+....-.+.|.+++|+++|+++++|-
T Consensus 412 -----g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 412 -----GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred -----CccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 211111111222567899999999999888775
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=229.28 Aligned_cols=305 Identities=13% Similarity=0.216 Sum_probs=229.3
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
-.+++|+..|.++++ ++.|..|++|+.|.+|++||+......... -+.+.....+.+.++.|
T Consensus 161 i~l~hgtk~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------fr~l~P~E~h~i~sl~y 222 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------FRQLQPCETHQINSLQY 222 (641)
T ss_pred EeccCCceEEEEeee--cCCCceeeeccccceEEEEecccccccchh----------------hhccCcccccccceeee
Confidence 457788999999987 667789999999999999999764332110 02233334456777778
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcC----------CCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCcc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------DGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
++.|+.|++.+.....+++|-+..+.....++ .+|...++|.+|+|+ ...+++++.||++|+|++.+.+
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 88888899999899999999766655554442 356677899999994 5678899999999999998775
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
...+.+.....
T Consensus 303 ~q~qVik~k~~--------------------------------------------------------------------- 313 (641)
T KOG0772|consen 303 SQLQVIKTKPA--------------------------------------------------------------------- 313 (641)
T ss_pred hheeEEeeccC---------------------------------------------------------------------
Confidence 44433321100
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
.+..-.++.++|++||+.+++++.||.|.+|+.......+. ..+.
T Consensus 314 ----------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk-- 358 (641)
T KOG0772|consen 314 ----------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVK-- 358 (641)
T ss_pred ----------------CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-----------------eEee--
Confidence 11345678999999999999999999999999732211111 1111
Q ss_pred cCCCCCCC--CeeEEEEecCCCEEEEEe-CCeEEEEECCCCc-eeeEecCC--CCCeEEEEEecCCCcEEEEEe------
Q 001318 799 VTDSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-TMATFMPP--PPAATFLAFHPQDNNIIAIGM------ 866 (1101)
Q Consensus 799 ~~~~~~~~--~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~--~~~i~~l~~sp~d~~~lasg~------ 866 (1101)
..|.. .|+++.||+||++|++-+ |+++++||+...+ ++.+..+. .-.-+.++||| +.++|++|+
T Consensus 359 ---~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 359 ---DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGM 434 (641)
T ss_pred ---eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCC
Confidence 12555 899999999999999988 9999999998643 44444433 23467899999 899999986
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
..|.+++||..+...+.++.-....|..+.|+|-=+.|..++.||+++||=-.+
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 357899999999999999887788899999999888888889999999884433
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=225.60 Aligned_cols=284 Identities=17% Similarity=0.225 Sum_probs=219.4
Q ss_pred ccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++. ++..|.+.|..|++.. + .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence 68999999999999976 889999999999999999877666 6889999999999987 3 48999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
.+.. ..++++.+ ...+..+.-+. .+..++|++. .|-+||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9665 46677654 33455554322 2357888875 588899988777777766666667777766655
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..|++++.|+.|.+||++.+.++..+..... -+.++|+|.+-.++++++|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence 4577777999999999999999887764433 5679999988899999999999999987552222
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
....
T Consensus 266 ~v~~---------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 266 NVHK---------------------------------------------------------------------------- 269 (433)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+|.+.|.+++|||.|+-+++|+ |.+|+||.+..+.....+.. ....|.|+.||. |.+++++|++|+.|++|.....
T Consensus 270 -dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 270 -DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred -ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence 1666677777888888888888 88888888776544332211 235799999999 9999999999999999987654
Q ss_pred e
Q 001318 880 E 880 (1101)
Q Consensus 880 ~ 880 (1101)
+
T Consensus 348 e 348 (433)
T KOG0268|consen 348 E 348 (433)
T ss_pred h
Confidence 4
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.3e-25 Score=239.92 Aligned_cols=257 Identities=16% Similarity=0.268 Sum_probs=214.6
Q ss_pred CCCCCCcceeeccc-CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC-CC
Q 001318 330 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PG 407 (1101)
Q Consensus 330 ~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~ 407 (1101)
-.+.....+..+.. +...|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |.
T Consensus 201 lW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~ 260 (484)
T KOG0305|consen 201 LWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHA 260 (484)
T ss_pred EEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcC
Confidence 33444444555554 3899999999999996 99999999999999998877663 555 99
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
..|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..++|++|+. ++++|+.|+.+.|||.....
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcc
Confidence 999999999 78899999999999999998775543 4889999999999999999 79999999999999998889
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEe--cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.+..+..|.+.|.+++|.|-.. .+|++|+ .|++|++||..++..+.... ....|.++.|++..+
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k------------ 400 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK------------ 400 (484)
T ss_pred ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC------------
Confidence 9999999999999999998766 4788875 49999999999766554433 234466666666554
Q ss_pred EEEEcCCCCEEEE--EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 566 VVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 566 ~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 ---------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ---------ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4444 45678999999999999999887655 7999999999999999999999999998664
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=219.66 Aligned_cols=279 Identities=17% Similarity=0.292 Sum_probs=227.0
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.+.++...+....+++|+.|..+.++|...+ +.+..+.|
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G---------------------------------------- 259 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG---------------------------------------- 259 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC----------------------------------------
Confidence 4667777777788999999999999998777 55555443
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
|...|..+.|+++...+++++.|..|+||.
T Consensus 260 --------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 260 --------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred --------------------------------------------------cceEEEEEEeccchhheeecCCcceEEeec
Confidence 667889999999999999999999999998
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP- 844 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~- 844 (1101)
..... .... . ..|..+|+.+..+|.|.||++++ |+++.+.|++++.++.....
T Consensus 290 ~~~~s-------------------~~~~----~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 290 VPLSS-------------------EPTS----S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ccccc-------------------Cccc----c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 63211 0001 1 12899999999999999999999 89999999999988876653
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccc
Q 001318 845 -PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 923 (1101)
Q Consensus 845 -~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~ 923 (1101)
..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|..++|+.+|-+||+++.|+.|++||++.-+.
T Consensus 345 ~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 345 TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc
Confidence 234689999999 999999999999999999999999999999999999999999999999999999999999987442
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
.+ .+..... .++.++.|.+.|++|+.+ .+=+|++++-.+ ..++..+ ..|.+..+++.|..+.++++++
T Consensus 424 ~k--t~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 424 FK--TIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred cc--eeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeec
Confidence 22 2222222 258999999999999995 555666666444 3444444 3678899999999999999999
Q ss_pred EcCCeEEEEEc
Q 001318 1001 FLDATVCVFSA 1011 (1101)
Q Consensus 1001 s~dg~v~vwd~ 1011 (1101)
+.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999888764
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.8e-25 Score=236.39 Aligned_cols=238 Identities=17% Similarity=0.287 Sum_probs=204.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE-EEEec-C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d 418 (1101)
+.+|.+.|..+++.+... ++++|.||++++|+-..++.+.. ..+.+|.+.|.+ +++-+ |
T Consensus 10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceecccc
Confidence 446999999999988874 89999999999999766655432 246788888888 88886 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+..|++|+.|.+|.+|...+...+. +|.||...|++++...++. ++|||.|.+++||- .+++...+.+|+..
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS 142 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence 6679999999999999999987655 7999999999999887775 89999999999995 56777889999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|+++...+. +.++|||.|++|++|.- ++...++.+|...|..+++-+++. |++
T Consensus 143 VWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS 195 (745)
T KOG0301|consen 143 VWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS 195 (745)
T ss_pred eeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence 999987543 38999999999999954 677888999999999999988875 999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++.||.|++|++ +|+.+..+.+| ...+.+++...++..++++++|++++||+..
T Consensus 196 csNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 196 CSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999 77788777655 4479999988899999999999999999865
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=210.45 Aligned_cols=241 Identities=21% Similarity=0.228 Sum_probs=202.3
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc--EEEEEeccCeEEEEEeec
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~ 878 (1101)
..|.+.|+++|+ ++.|+|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|.+|++||.|.+|+..+
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence 349999999998 678999999 99999999999999999999999999999998 543 899999999999999999
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
.+++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+.. ..+.+.|+|.|.+++++.
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999877533322221 235699999999999998
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
...|-+|.+.+......+.. ...+.|+.|- ++..|++|.+|+.|.+||.+++...+.+. +|... |-
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK-- 253 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK-- 253 (362)
T ss_pred ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--
Confidence 89999999998887766642 3567777776 67788999999999999999988877766 22222 33
Q ss_pred EEE-EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1039 VIA-AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1039 ~i~-~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++. |...++.+|+++|.||.|+|||+....
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 343 333367899999999999999998773
No 110
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.8e-24 Score=242.69 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=181.2
Q ss_pred EecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCce-
Q 001318 364 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 441 (1101)
Q Consensus 364 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~- 441 (1101)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556677777765543322 47899999999999996 89999999999999999986432
Q ss_pred e----eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe
Q 001318 442 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 517 (1101)
Q Consensus 442 ~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 517 (1101)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|+ ++|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEe
Confidence 1 122357899999999999999875 56899999999999999999888776 66789999985 5568999999
Q ss_pred cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC----cEEEEECCC-
Q 001318 518 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 592 (1101)
Q Consensus 518 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 592 (1101)
.|+.|++||++++.....+..|.+.+.... +....|+++++++++++.|+ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999999999877777776665443322 22234567778899988664 799999985
Q ss_pred CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 593 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 566766655444333333444557899999999999999999765
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-24 Score=209.16 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=161.7
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-....+.|.+|+||| ...+++++|.|++||+|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 666677899999999999987422222 34667999999999999998 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++ +..+..|.++|..+.|....+-..|++||-|++|++||.+...++.++..+.. ++++..
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv------------- 164 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADV------------- 164 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhc-------------
Confidence 999995 56677799999999998777667899999999999999998777776665542 222211
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
-...++++..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+-+..+..+
T Consensus 165 ----------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 165 ----------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ----------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 113577888999999999987654332221112235789999998888899999999998887664
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.4e-25 Score=227.69 Aligned_cols=270 Identities=14% Similarity=0.225 Sum_probs=220.6
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
-++...+.|.+.|+.+.+-|....++|+++..+.|.|||+.+..-.... .+.-.+...+.+|...=+.|+|
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccc
Confidence 3455567899999999999999999999999999999999765433210 0011223368899998899999
Q ss_pred ec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC--CCce
Q 001318 416 SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAK 488 (1101)
Q Consensus 416 sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~ 488 (1101)
++ ..-+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.+.
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCC
Confidence 99 566899999999999999986433 5556678999999999999998877 79999999999999999 5666
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+...+|.+.|+|+.|++.. +.+|++|+.|++|.+||+++.. ....+..|...|..+.|+|...
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e-------------- 329 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE-------------- 329 (422)
T ss_pred cccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC--------------
Confidence 67888999999999998765 4799999999999999999864 5668889999999999999876
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc------------eeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEe
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILAT 634 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 634 (1101)
..|++++.|+.+.+||+..-. +...|...+|...|..+.|+|+.. .+++.++|+.++||.+
T Consensus 330 ------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 330 ------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 568999999999999986422 222344556677899999999665 5667789999999987
Q ss_pred cC
Q 001318 635 SD 636 (1101)
Q Consensus 635 ~~ 636 (1101)
..
T Consensus 404 s~ 405 (422)
T KOG0264|consen 404 AE 405 (422)
T ss_pred cc
Confidence 63
No 113
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.6e-23 Score=225.40 Aligned_cols=518 Identities=15% Similarity=0.199 Sum_probs=325.4
Q ss_pred EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCe-EEEEEecCCCcEEEEeCCCCceE
Q 001318 411 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 411 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
..-.||+|+++++... +..|.||...++.++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 3456899999998776 4679999999999887 68899999999999887663 47889999999999999999999
Q ss_pred EEecCcccCeEEEeeeec-CCccEEE-EEecCCcEE-EEecCCCCceeeecCCCCceeEEEE-ccCCceEEeccccCcee
Q 001318 490 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~-~~~~~l~-s~~~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~~~ 565 (1101)
+++..+. ++.++.+.+. .+...++ ....|..+. ....+..+....+ .-..+ +..+ .....+. .-.
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~-------~~~t~~~~~~-d~~~~~~--~~~ 164 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF-------VLATFDSAKG-DFLKEHQ--EPK 164 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeee-------Eeeeccccch-hhhhhhc--CCc
Confidence 9887443 3333332110 0000111 111111110 0000000000000 00000 0000 0000010 123
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc---CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
++.+++.|++... ..+..+.+|+..++. ..... ...|...+++.+++|+++++++|..||.|.+|.--...
T Consensus 165 ~I~~~~~ge~~~i-~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~---- 238 (792)
T KOG1963|consen 165 SIVDNNSGEFKGI-VHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS---- 238 (792)
T ss_pred cEEEcCCceEEEE-EEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc----
Confidence 4555666554444 445678899887755 11111 11233347899999999999999999999999632210
Q ss_pred ccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC
Q 001318 643 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 722 (1101)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~ 722 (1101)
..+-+..+|
T Consensus 239 -----------------------------------------------------------------~~~~t~t~l------ 247 (792)
T KOG1963|consen 239 -----------------------------------------------------------------DDSETCTLL------ 247 (792)
T ss_pred -----------------------------------------------------------------cccccceEE------
Confidence 000111111
Q ss_pred CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 723 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
+=|...|.+++|+++|.+|++||..+.+.+|.+. ++. ...++.
T Consensus 248 ------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~----------------------T~~--kqfLPR- 290 (792)
T KOG1963|consen 248 ------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE----------------------TGK--KQFLPR- 290 (792)
T ss_pred ------------EecccccceeEEecCCceEeecccceEEEEEeec----------------------CCC--cccccc-
Confidence 1177899999999999999999999999999873 332 112222
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-----------CCCeEEEEEecCCCcEEEEEeccCe
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
-.+.|..+.+|||+.+.+... |+.|.+..+.+.....++.+. .+-.+.++++| ..+.++..+..|.
T Consensus 291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~ 368 (792)
T KOG1963|consen 291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH 368 (792)
T ss_pred -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence 578899999999999888876 999999988776665554432 23357788999 6778888899999
Q ss_pred EEEEEeecceEeeeec-----------CcccCeeEEEEcCCCCEEEEEeC--------CC--ceEEEeCCCcccccceee
Q 001318 871 IQIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~-----------~h~~~V~~l~~s~dg~~l~s~s~--------D~--~v~iwd~~~~~~~~~~~~ 929 (1101)
|.+||+.+.+.+..+. .+.-.+++++.+-.|.+++|+-. || .+++|-.....+......
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T 448 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT 448 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence 9999998877665542 13345788888888999998742 33 478997766443222222
Q ss_pred ecCCCCCCCCCCCeEEEEcCCCc-EEEE-EeCCeEEEEEcCCceeeee--------ccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 930 QIPTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECVKQ--------WVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 930 ~~~~~~~~~~~~v~~~~~s~dg~-~la~-~~d~~v~vwd~~~~~~~~~--------~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
.+..-|.. ..+..+.+++... .+++ +.|+.+++|-....+.+.. ....-|..++++++||.||..|++
T Consensus 449 ~I~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 449 KINNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred EEecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE
Confidence 22222222 2233333444333 5555 6999999998844322111 111236889999999999977665
Q ss_pred EEcCCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 1000 CFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 1000 ~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
+.|++|.+||..+ .++.+...... .+.. + .. ..+-.+.+ ..+.....+.+.+|++.+..-.|
T Consensus 527 -s~~~~Itiwd~~~~~~l~~~~~~~~-~~~~---~-~~--~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 -SFDDTITIWDYDTKNELLCTEGSRN-WPIA---E-LL--FTAQTQND--GALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -ecCCEEEEecCCChhhhhccccccc-cchH---h-Hh--hhcccccc--cceeeccCceEehHhhhhhheec
Confidence 5788999999999 56665554222 2211 1 11 11111213 34455567899999999888666
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=4.6e-24 Score=215.55 Aligned_cols=282 Identities=20% Similarity=0.274 Sum_probs=230.1
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 532 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 532 (1101)
..+.++...+... .+++|+.|..+.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence 4678888888744 69999999999999999999999999999999999987655 5899999999999998887666
Q ss_pred eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEE
Q 001318 533 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 612 (1101)
Q Consensus 533 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 612 (1101)
......|..+|+. +..+|.|.||++++.|++..+.|++++..+...........+++.+
T Consensus 296 ~~~~~~h~~~V~~---------------------ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 PTSSRPHEEPVTG---------------------LSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccccee---------------------eeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 5555556555544 4555566799999999999999999999888877544445688999
Q ss_pred EccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCC
Q 001318 613 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 692 (1101)
Q Consensus 613 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1101)
|+|||..+.+|..||.|+|||+.++. ....
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~------------------------------------------------- 384 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK------------------------------------------------- 384 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence 99999999999999999999987651 1100
Q ss_pred CccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccccc
Q 001318 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER 772 (1101)
Q Consensus 693 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 772 (1101)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-CCCeE
Q 001318 773 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAAT 850 (1101)
Q Consensus 773 ~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~ 850 (1101)
+. +|.++|.+++|+.+|-|||++. |+.|++||++..+...++... ..++.
T Consensus 385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 11 2777788888888888888887 677888888877777776543 23699
Q ss_pred EEEEecCCCcEEEEEeccCeEEEEEee--cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 851 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++.|.+ .|.+|++++.|=+|++++-. ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus 437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999 89999999888666666633 57788889999999999999999999999999999888754
No 115
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.6e-23 Score=236.67 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=177.7
Q ss_pred CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce--------EeeeecCcccCeeEEE
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------~~~~l~~h~~~V~~l~ 896 (1101)
++.|++|+......+..+.+|...|.+++|+|+++.+||+|+.||.|+|||+.++. .+..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 57799999988788889999999999999999558899999999999999997642 3456789999999999
Q ss_pred EcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeee
Q 001318 897 FSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 897 ~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~ 974 (1101)
|+|++.. |++++.|++|+|||+.+++... .. . +. ..|.+++|+|+|.+|++ +.|+.|+|||+.+++.+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAF----QI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEE----EE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999875 5799999999999999865321 11 1 11 36899999999999998 579999999999999888
Q ss_pred eccCCCCCCCee-----EEEEcCCCCEEEEEEcCC----eEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 975 QWVPRESSAPIT-----HATFSCDSQLVYACFLDA----TVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 975 ~~~~~~h~~~i~-----~l~~spdg~~l~s~s~dg----~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
.+. +|.+.+. ...|++|+.+|++++.|+ +|+|||+.+ ++.+..+. +..+ ..++...|.+
T Consensus 204 tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----ld~~-----~~~L~p~~D~ 272 (568)
T PTZ00420 204 SFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS----IDNA-----SAPLIPHYDE 272 (568)
T ss_pred EEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE----ecCC-----ccceEEeeeC
Confidence 775 6665543 334678999999988774 799999985 55565443 1111 2222345666
Q ss_pred CCCCEEEEEecCCcEEEEeccCCC
Q 001318 1045 QEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++.++++|+.|++|++|++..+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc
Confidence 678899999999999999998764
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.4e-23 Score=215.17 Aligned_cols=255 Identities=15% Similarity=0.216 Sum_probs=201.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+++.|..-|.++.+|...++ +.||+. |.|+|||+....... +....-.....+.|+.+..+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 34567889999999999999997 888886 899999997542211 11111123346789999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.++|..||.|.|||+.+...++.|+||+
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22223444445678899999999 89999999999999999999999999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+.+.|+.+ +.+|..|.+|+.|.+||.||++++.+...... ...|..+.++|++.++
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF----------------------~SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------------SSQIFSLGYCPTGDWL 607 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh----------------------hhhheecccCCCccce
Confidence 99999987 56778999999999999999998765543221 1245566777888899
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++|-+++.+.+...... ....+ +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus 608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 99999999988886443 33333 334457999999999999999999999999987666
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=208.25 Aligned_cols=329 Identities=15% Similarity=0.233 Sum_probs=244.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
.+++...++++.. +.+..+.+| ...|..++.......+.+++.|.+-+||.++++ .++..+.
T Consensus 126 rivssFk~~t~~~------~lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~--------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYT--------- 187 (481)
T ss_pred hheeeecCCceeE------eehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccc-cceeeec---------
Confidence 3566666665332 234444444 447888888777778889999999999999988 4444332
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
T Consensus 188 -------------------------------------------------------------------------------- 187 (481)
T KOG0300|consen 188 -------------------------------------------------------------------------------- 187 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC----------Ccee-eeecCcccc---CCCcccc---cc
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS----------GKAT-ASVAPQLWQ---PPSGIMM---TN 797 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~-~~~~~~lw~---~~~g~~~---~~ 797 (1101)
+|.+.|.++.|++.+.++++++.|++..||.....-..|. .... ......--| -.+|..+ ..
T Consensus 188 -GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~ 266 (481)
T KOG0300|consen 188 -GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM 266 (481)
T ss_pred -ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence 3777888999999999999999999999987422100000 0000 000000000 0111111 12
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.++ +|...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|..+.+.++-+| ..+++++.+.|-+.++||+
T Consensus 267 ~lt--gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 267 RLT--GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred eee--ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccc
Confidence 233 4999999999999999999999 99999999999999999999999999999999 8999999999999999999
Q ss_pred ecc-eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 877 RVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 877 ~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
... ..+..|+||...|+++.|.-| ..+++|+.|.+|+|||+.+... .+..... ..++..++.+..+..+|
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIA 414 (481)
T ss_pred hhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEE
Confidence 743 456889999999999999876 5789999999999999988442 1222211 14678999999999999
Q ss_pred E-EeCCeEEEEEcCCceeeeec--cCCCCCCCeeEEEEcCCCC--EEEEEEcCCeEEEEEcCCc
Q 001318 956 V-VHETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~~~~~--~~~~h~~~i~~l~~spdg~--~l~s~s~dg~v~vwd~~~~ 1014 (1101)
. -.+++|++||++..+..+.. ...+|...|+|++|+.+.- -|++++.|..+.=|.+.+.
T Consensus 415 iPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 415 IPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8 47789999999877665443 3458999999999987653 4888999999999998653
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-25 Score=219.07 Aligned_cols=243 Identities=17% Similarity=0.237 Sum_probs=195.9
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+-+|.+.|.|++-+|..-..+|+|+.||.|+|||+.+.+++. .+..|.+.|..|++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence 3567999999999999984469999999999999999888776 4889999999999997
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
..+++++.|.+|+.|.++.. .++ ++.+ ...+..+.-+..+. .++|||. .|.|||.....++..+.--...|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 78899999999999998873 222 3332 34566777666666 6899986 58999999999999998888889
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.|++... ..|++|+.|+.|.+||++...++...... . ..+.++|+|.+-.|+++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-m---------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-M---------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-c---------------------cccceecCccccceeec
Confidence 9999987665 68889999999999999987766543211 1 12235555555568899
Q ss_pred eCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++|..++.||++..+ ++..... +...|.++.|||.|+-+++|+.|.+|+||.+..+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 999999999998753 4555553 4557999999999999999999999999998766
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.9e-24 Score=227.99 Aligned_cols=276 Identities=14% Similarity=0.237 Sum_probs=225.0
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE-EEE
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~-~~~ 813 (1101)
.+|...|..+++.+.. .+++++.||++++|+-.... ......+ .+|.+.|.. +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~--~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAF--EGPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceec--ccCcceeecccee
Confidence 4688889888877666 58999999999999752211 0111111 225565655 777
Q ss_pred ec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC
Q 001318 814 SK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 814 s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
.+ ++-.+++|+ |.+|.+|.......+.++++|...|++++... ++. +++|+.|.+++||-. +++...+++|...
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 75 444578888 99999999999999999999999999999877 665 999999999999975 5667779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
|+++++-|++ .++|||.|++|++|.-.+ +++++.||.. .|+.+++-+++.++-++.||.|+.|++ +|+
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cCc
Confidence 9999999987 899999999999998644 6778888875 899999999999999999999999999 677
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
++.... +|..-|+++....+++.++++++|++++||+.. ++.+.+. +|. ..++ ++.+-+ +| -++
T Consensus 211 ~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~-Ng-DIv 274 (745)
T KOG0301|consen 211 VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL-NG-DIV 274 (745)
T ss_pred eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee-CC-CEE
Confidence 776655 999999999999999999999999999999987 6666666 442 2266 666665 33 488
Q ss_pred EEecCCcEEEEeccC
Q 001318 1052 LGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~ 1066 (1101)
+|++||.|+||-...
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 888999999999863
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-22 Score=184.81 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=200.0
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
.|.+.|.+.+|+|+|..+++++.|..|++..++.+.....|.. +...-|.+.|..++|-.
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~d--------------------le~nmhdgtirdl~fld 146 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHD--------------------LEFNMHDGTIRDLAFLD 146 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcc--------------------eeeeecCCceeeeEEec
Confidence 4889999999999999999999999999976644332222211 11122899999999964
Q ss_pred ----CCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC--
Q 001318 816 ----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-- 887 (1101)
Q Consensus 816 ----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-- 887 (1101)
.+..|++++ |.+|++-|...|+..+.+.+|.+.|.++- +- ++-++++|+.|.+|++||++-..++.++..
T Consensus 147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~ 224 (350)
T KOG0641|consen 147 DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF 224 (350)
T ss_pred CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence 356788876 67899999999999999999999998873 23 578999999999999999998888877642
Q ss_pred -----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCe
Q 001318 888 -----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 961 (1101)
Q Consensus 888 -----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~ 961 (1101)
.++.|.+++..|.|++|++|-.|....+||+..+. .++.+..|. ..|.++.|||...|+.+ +.|..
T Consensus 225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phs---adir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCc---cceeEEEeCCCceEEEEecccce
Confidence 23679999999999999999999999999999865 344444444 48999999999999999 69999
Q ss_pred EEEEEcCCc--eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 962 LAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 962 v~vwd~~~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
|++-|+... ..+.......|...+..+.|.|..--+++.+.|.++.+|-+.
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999998753 222333345789999999999999889999999999999764
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.3e-23 Score=198.50 Aligned_cols=187 Identities=17% Similarity=0.264 Sum_probs=145.5
Q ss_pred EEEEEcCCeEEEEEccCCc---------eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 422 FGVAYSRHIVQIYSYHGGD---------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~---------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
+++|+....|.=+++.-.. .+.+.+.+..|.++|+++|.+ +. ++++||.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence 4455555555555443211 133456678999999999995 66 8999999999999999999999999
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
-.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.+++.|.|
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-------------------- 139 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-------------------- 139 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--------------------
Confidence 999999999999766544589999999999999999887777777777766666555544
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+..++.+.|+.+++||+-+|+.-..+..... ...+.|+|.|.+++.+.. ..|-+|.+.+.
T Consensus 140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A 199 (362)
T KOG0294|consen 140 -KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGR-NKIDIYQLDNA 199 (362)
T ss_pred -ceEEEEcCCceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEec-cEEEEEecccH
Confidence 5788899999999999999987666654332 344999999998888876 46778876554
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=201.70 Aligned_cols=258 Identities=18% Similarity=0.228 Sum_probs=207.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 420 (1101)
.|++.|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|-. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 48889999999889996 9999999999999998765421 1125899999999999987 899
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~ 497 (1101)
+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.++|++++.||.|.|.+.++. ...+....|.-
T Consensus 72 iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 9999999999999999988 4555667889999999999999988889999999999999988754 12245567999
Q ss_pred CeEEEeeeecCC-c-----------cEEEEEecCCcEEEEecCCCC--ceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 498 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 498 ~v~~v~~~~~~~-~-----------~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
.|++++|.|..- | ..|++|+.|..|++|+.+... ...++..|...|..+++.|.-..
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------- 221 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------- 221 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence 999999987521 1 569999999999999998753 33457889999999999886421
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
-..++++++.||++.||..+.... ..++ .+.....+..++||..|+.|++++.|+.|.+|.-..
T Consensus 222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 013699999999999998763211 1111 122334688999999999999999999999997543
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.6e-24 Score=199.55 Aligned_cols=222 Identities=19% Similarity=0.270 Sum_probs=180.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~ 479 (1101)
+...|.+.|..+...-.|++|||++.|++|+|+.+..+.....+.+|.||.++|..++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999999999999999999999999998877677779999999999999987 677 899999999999
Q ss_pred EEeCCCCce--EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC---ceeeecCCCCceeEEEEccC---
Q 001318 480 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSAD--- 551 (1101)
Q Consensus 480 iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 551 (1101)
||.-++|+- ...+..|...|++++|.|..-|-.|++++.||.|.+.+.+... .......|.-.|+++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999877743 4566789999999999999999999999999999999988752 22345667788999999886
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC----CEEEEEeCCC
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 627 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg 627 (1101)
|...-.+... .-+.|++|+.|..|+||+..+++-+..-...+|...|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111000 0246999999999999999887543322234556689999999953 5899999999
Q ss_pred cEEEEEec
Q 001318 628 GIKILATS 635 (1101)
Q Consensus 628 ~i~iw~~~ 635 (1101)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-20 Score=207.22 Aligned_cols=254 Identities=16% Similarity=0.232 Sum_probs=206.3
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
..|+..-+.++|.|+|.+ |.+++.||.|++|+.......-. .+.-+...|.+++.. +.+
T Consensus 10 yaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~~--s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIACY--SNH 68 (933)
T ss_pred hhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEeec--ccc
Confidence 358888999999999995 88999999999999876521110 122266777777654 569
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
|++|+.+++|.+|....++.-.. +....-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 99999999999999998764332 333467899999999999 8999999999999999999999999999999999
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.|+ +++.+|++.+-||.|++||+.++.....+..-...-.. .....+..++|+|++..++..+.
T Consensus 144 l~~~--p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 144 LSYD--PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eeEc--CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence 9974 56689999999999999999987766655432110000 00224556788888888999999
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|+.|++|+..+......+........+.+++|+|+|+|||+++.+|.|.|||+.+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999988887665555588999999999999999999999999986
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=215.38 Aligned_cols=281 Identities=12% Similarity=0.170 Sum_probs=225.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeecccccc-CCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
|..-|.+++++...+++++++. |.|+|||+..... .+.. .+........|+++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvs---------------------qLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVS---------------------QLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccc---------------------cccccCcccceeeeEecC
Confidence 7788889999999988887764 6899999854311 1110 122223567899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCcee--eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
||+.|++|+ -.++.|||+...... .++......+.+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999 688999999865433 33443345678899999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~ 971 (1101)
.||.+++||..|-|||-|.+||.||+.++.+.... + -...|.++-.+|++.+|+++ .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 99999999999999999999999999987642211 1 11478999999999999997 67788888876554
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
.. ..+-|...|.++.|++.|+++++.+.|..+-.|...-|..+...+ ....|. +|..+- |.++||
T Consensus 626 ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIV 690 (705)
T KOG0639|consen 626 KY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIV 690 (705)
T ss_pred ce---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEE
Confidence 42 234678999999999999999999999999999999998886655 122244 666666 569999
Q ss_pred EEecCCcEEEEec
Q 001318 1052 LGLSDGGVHVFEP 1064 (1101)
Q Consensus 1052 s~~~dg~v~vW~~ 1064 (1101)
||+.|....|+.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888875
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.1e-21 Score=212.60 Aligned_cols=517 Identities=12% Similarity=0.135 Sum_probs=319.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC---Ce
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SL 421 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~ 421 (1101)
...-..-.||+|+++++... +..|.||.+.|++++. .+.+|..++..+.+.|.. .+
T Consensus 16 n~~~~~avfSnD~k~l~~~~--~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~ 74 (792)
T KOG1963|consen 16 NGNKSPAVFSNDAKFLFLCT--GNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANY 74 (792)
T ss_pred cceecccccccCCcEEEEee--CCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceE
Confidence 33344557999999765543 4899999999999887 489999999999999854 47
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEc----CCCCeEEEEEecCCCc-EEEEeCCCCceE-------
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKT-IKVWDATNGAKQ------- 489 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s----~d~~~~~l~s~~~d~~-i~iwd~~~~~~~------- 489 (1101)
+.+++.||.|++||...+..++. +.. ..++..+.+. .... .+..+..|.. +.-...+..+..
T Consensus 75 ~~~~sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t 148 (792)
T KOG1963|consen 75 LIVCSLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLAT 148 (792)
T ss_pred EEEEecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeee
Confidence 78999999999999999987763 222 2233333332 1121 1111111111 111111111111
Q ss_pred ------EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 490 ------YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 490 ------~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
..+.+|.. -.++.+ .+.|. +.....+..+.+|+..... ..... +-..-++...
T Consensus 149 ~~~~~~d~~~~~~~-~~~I~~--~~~ge-~~~i~~~~~~~~~~v~~~~--~~~~~---------------~~~~~~Htf~ 207 (792)
T KOG1963|consen 149 FDSAKGDFLKEHQE-PKSIVD--NNSGE-FKGIVHMCKIHIYFVPKHT--KHTSS---------------RDITVHHTFN 207 (792)
T ss_pred ccccchhhhhhhcC-CccEEE--cCCce-EEEEEEeeeEEEEEecccc--eeecc---------------chhhhhhccc
Confidence 11122322 123333 23333 3333445667888776643 11111 0111122224
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+.+.+++|++++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 68889999999999999999999996433 2221111224555689999999999999999999999999999884322
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
+..-. ..--....++|+...+....|+.|.+-...++
T Consensus 288 --LPRLg-----------------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 288 --LPRLG-----------------------------------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred --ccccC-----------------------------------------CeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 11111 11123456688888888888999999888766
Q ss_pred CCCccccccccC----ccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 722 SEPNQCRSLRLP----ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 722 ~~~~~~~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
........+..+ ......-.+.++++|.-+.++..+..|.+++||+.+...-.. ..+...+...|..
T Consensus 325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~------~~v~~~n~~~~~~--- 395 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK------LQVCDENYSDGDV--- 395 (792)
T ss_pred hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee------EEEEeecccCCcc---
Confidence 554444443333 123456678899999777789999999999999865432111 1111111122211
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe---------CC--eEEEEECCCCceee-----EecCCCCCeEEEEEecCCCc-
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS---------GG--KISLFNMMTFKTMA-----TFMPPPPAATFLAFHPQDNN- 860 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s---------dg--~i~vwd~~~~~~~~-----~~~~~~~~i~~l~~sp~d~~- 860 (1101)
.+.-.+++++.+..|.++++.. || .+++|-......-. ...+|...+.+.+|.+.-..
T Consensus 396 -----n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 396 -----NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSV 470 (792)
T ss_pred -----eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccc
Confidence 1445678888888999999873 23 37889765433222 23567776666666543444
Q ss_pred EEEEEeccCeEEEEEeecc----------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee
Q 001318 861 IIAIGMDDSSIQIYNVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
..++++.||.++||-+.+. .|...-.-|..++++++|+.||..|+ ++.|++|.+||..+... ...
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~----l~~ 545 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNE----LLC 545 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhh----hhc
Confidence 8999999999999998432 23333234888999999999996555 56788999999988311 111
Q ss_pred cCCCCCCCCCCCeEEEEcC---CCcEEEEEeCCeEEEEEcCCceeee
Q 001318 931 IPTGRTPTAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~---dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
...-. ...+..+.|.. ....+.....+.+.+|++.++...-
T Consensus 546 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 546 TEGSR---NWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccccc---ccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 11100 01333333333 2223333677889999998887765
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.1e-22 Score=195.71 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+.|+.+.|+|.+.. |++++.||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4678999999999997 5666799999999998874432 456889999999987 56788
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 778999999999998777 79999999999999998866666665 344788776
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
. .++.|+.|+.|..+.+||+++........... -+-.++++++-|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~-------------------lkyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS-------------------LKYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhcccc-------------------ceeEEEEEEEecCCCceEEEeecc
Confidence 4 34689999999999999999876554222111 011445555555556688999999
Q ss_pred cEEEEECCCC----ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 584 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 584 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.|.+=.++.. +....|+.|.. .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9888666554 33344443322 236899999999889999999999999998776
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.4e-22 Score=192.81 Aligned_cols=240 Identities=16% Similarity=0.247 Sum_probs=179.6
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCC
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 420 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 420 (1101)
-.|.+.|+++.+.|..-+++++|+.||.|.|||++.......-.+ +. ...|. .....-.+|.-.|..+.|-| |..
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~-k~~c~--v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IA-KHKCI--VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-ee-heeee--ccccCCccceeeeeeeEEeeecCc
Confidence 359999999999996444699999999999999987542110000 00 00011 11113568999999999999 888
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCC-eEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.+.+++-|.+++|||..+-+... .|+ -.+.|+.-+|||-.. +-++++|..|-.|++.|+.+|.+.+++.||.+.|
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred eeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 99999999999999999866443 222 357788888988654 4367888889999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.++.|+++.+ -.|++|+.||.|++||++...
T Consensus 192 laV~Wsp~~e-~vLatgsaDg~irlWDiRras------------------------------------------------ 222 (397)
T KOG4283|consen 192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRAS------------------------------------------------ 222 (397)
T ss_pred EEEEeccCce-eEEEecCCCceEEEEEeeccc------------------------------------------------
Confidence 9999988765 578999999999999997521
Q ss_pred eCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
|..++.|...++....++ ...+...|+.++|+.++.++++.+.|..+++|+..+|...+
T Consensus 223 ---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 223 ---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ---ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 223333433332222222 22344579999999999999999999999999999884443
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.5e-23 Score=209.54 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=185.5
Q ss_pred eeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCe
Q 001318 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 466 (1101)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~ 466 (1101)
.+|.+..+....+..+ -.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 4555544433332222 24589999999999999999999999999999999776 5789999999999999999
Q ss_pred EEEEEecCCCcEEEEeCC---------CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec
Q 001318 467 LCVITCGDDKTIKVWDAT---------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 537 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 537 (1101)
+|+|||.||.|.+|++. +-++++.|..|+-+|+.+...+.+...+++|+|.|.++++||+..+..+.++.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999864 34678899999999999988766566799999999999999999876555433
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceeEEEcC
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDA 601 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~ 601 (1101)
.+ ..+.+++++|-+..+++|+++|.|.+.++... ..+..+.+
T Consensus 216 fp----------------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 216 FP----------------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred cC----------------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 22 25556666777777888888888888776432 23445555
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
|.....|+|++++-||.+|++|+.||.++|||+.+. ++++.+.....++
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKGPV 322 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcccc
Confidence 655558999999999999999999999999999887 7787776433333
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=222.03 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=203.4
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
.|....+.++|.|+|..|++++.||.|++|+.......| ..+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence 488889999999999999999999999999864321110 0000 04555666665
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++.+|++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 444888888 89999999988766545554567899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
|.|+|.+.+||+.+.||.|++|+++++....................+..++|+|+|..+++ +.|+.|.+|+..+....
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998765443222111111111234578899999655555 89999999999999998
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
..+....|...+.+++|||+|+|||+++.||.|.|||+++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 8888777777799999999999999999999999999997
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3e-21 Score=212.31 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=149.3
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-eEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~ 886 (1101)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45666777766544 3 67888999888777766653 23468899999 899998888765 57788998887765543
Q ss_pred CcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEE
Q 001318 887 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 963 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~ 963 (1101)
. .....+++|++||++|+.+ ..++.|++||+.+++............+ ........++|+|+|+++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 2345789999999988544 4689999999998754322111111101 00113357899999998655 4577899
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|+|||+.+++.+.+++
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999988776543 245789999999999998764 68999999999999998887
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-21 Score=190.14 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=210.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
...+.|+.+.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.. +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 346789999999999999999999999999999875333 234899999999998665 8999999999999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
++.... +..|..+|.++...+.. ..+++|+-|++|++||.+.......+.... .|.++
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~------------------ 141 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM------------------ 141 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE------------------
Confidence 888654 44599999999986444 479999999999999998743333332222 33333
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+-.++.|++|+.+..+.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+... +.....
T Consensus 142 -----~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk 215 (323)
T KOG1036|consen 142 -----DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK 215 (323)
T ss_pred -----eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence 33456799999999999999998765543333333345789999998888999999999876444332 100000
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
+ . +|++..
T Consensus 216 k---y-----------aFkCHr---------------------------------------------------------- 223 (323)
T KOG1036|consen 216 K---Y-----------AFKCHR---------------------------------------------------------- 223 (323)
T ss_pred c---e-----------eEEeee----------------------------------------------------------
Confidence 0 0 000000
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~ 804 (1101)
-+.++. - .
T Consensus 224 ---------------------~~~~~~----------~-----------------------------------------~ 231 (323)
T KOG1036|consen 224 ---------------------LSEKDT----------E-----------------------------------------I 231 (323)
T ss_pred ---------------------cccCCc----------e-----------------------------------------E
Confidence 000000 0 1
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-...|..++|+. +|..||+|+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 23578899999988999998 99999999999999999988888899999999 9999999873
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=205.76 Aligned_cols=296 Identities=16% Similarity=0.260 Sum_probs=215.9
Q ss_pred EEecCC-CcEEEEeCCCCceEEEecCc-ccCeEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 470 ITCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 470 ~s~~~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
.+++.| .++.+||+++|....++++- ...-.++.. -++.+++++.. ...|.+|.+...........-.+
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg----- 82 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG----- 82 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhccccc-----
Confidence 334444 45999999999999888764 222122221 12246666654 45788998876544432222233
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
++.+++-+|.|.+++.|+..|.|++|.+.+|..+..+..| ...|+|+.|+.||.+|++|+.|
T Consensus 83 ----------------~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 83 ----------------PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ----------------ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCC
Confidence 4455555666668888889999999999999999998655 4479999999999999999999
Q ss_pred CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee
Q 001318 627 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 706 (1101)
Q Consensus 627 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 706 (1101)
|.|.+|.+.+- +.....|.-
T Consensus 145 g~V~vW~l~~l---v~a~~~~~~--------------------------------------------------------- 164 (476)
T KOG0646|consen 145 GAVLVWLLTDL---VSADNDHSV--------------------------------------------------------- 164 (476)
T ss_pred ccEEEEEEEee---cccccCCCc---------------------------------------------------------
Confidence 99999987543 111110000
Q ss_pred ccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCC--CceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 707 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 707 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
.-++.| ..|.-.|+.+...+. ..++++++.|.++++||+..
T Consensus 165 ----~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------- 207 (476)
T KOG0646|consen 165 ----KPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------- 207 (476)
T ss_pred ----cceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence 011111 237778888877664 45799999999999999843
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC----------------ceeeEecCCCC
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----------------KTMATFMPPPP 847 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------~~~~~~~~~~~ 847 (1101)
|.++.... ....+.+++++|-++.+++|+ +|.|.+.++... ..+..+.+|.+
T Consensus 208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 22222211 567899999999999999998 899998887532 23456788887
Q ss_pred --CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC
Q 001318 848 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 848 --~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d 900 (1101)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus 277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 899999999 9999999999999999999999999999877899999999654
No 134
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.9e-22 Score=191.69 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=217.7
Q ss_pred eEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 410 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 410 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999865333 5889999999999999999 7999999999999999999999
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+.+. ...+|+.+.|++...+..+++- .+..-.+-++..+.. ..+...+++..-. .-....|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h-----------~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKH-----------SVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCce-----------eeccCCCcccccc------ccccccc
Confidence 9887 7889999999987765444443 333333333332111 1122222222111 1112258
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|+..+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8899999999999999999999999998887554 246888999999999999999999999987532000 0
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
.++.+. ..
T Consensus 233 -----------------------------------------------------------r~~e~e-----------~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEVE-----------PE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCcC-----------hh--
Confidence 000000 00
Q ss_pred cccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 809 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~ 809 (1101)
| ++-|+ -....-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0122234
Q ss_pred EEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 810 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+++||.+|.|++.++ ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 688999999998887 4779999999999999999887 4577899999 66677766 789999998653
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=214.68 Aligned_cols=433 Identities=15% Similarity=0.158 Sum_probs=276.4
Q ss_pred EEEec---CCCeEEEEEcCCeEEEEEccCCcee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 413 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 413 l~~sp---dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
..|++ ....||.+..||.|.++|.....-- +++..+..|...|..+.|.| |+. .|++++.|.++++||++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 56665 4567899999999999998764311 22345668999999999999 544 7999999999999999999
Q ss_pred ceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 487 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 487 ~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+++.. +.||.+.|.++||.+.. ...|++|+.||.|.+||++...... +..... +++..|...+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~-~e~~~~------------~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDA-LEEFDN------------RIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhh-HHHHhh------------hhhccccCCC-
Confidence 98876 89999999999998654 4689999999999999998643110 000000 0000000000
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCe---EEEccCCCEEEEEeC-CCcEEEEEecCcccc
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 640 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~ 640 (1101)
.|. .. ....++-|-...+ .+.+ +.+..|...||+++. |+.|+|||++.....
T Consensus 198 -----tps--kp----~~kr~~k~kA~s~-------------ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPS--KP----LKKRIRKWKAASN-------------TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCC--ch----hhccccccccccC-------------ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 000 00 0011222222111 2333 556678888998887 999999999876332
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
.+.-.....
T Consensus 254 ~r~ep~~~~----------------------------------------------------------------------- 262 (720)
T KOG0321|consen 254 YRQEPRGSD----------------------------------------------------------------------- 262 (720)
T ss_pred cccCCCccc-----------------------------------------------------------------------
Confidence 221100000
Q ss_pred cCCCccccccccCc-cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 721 LSEPNQCRSLRLPE-NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
.++. ....-.+.++.....|.+|++.+.|+.|++|++......+.+... |.+
T Consensus 263 ----------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~----- 315 (720)
T KOG0321|consen 263 ----------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL----- 315 (720)
T ss_pred ----------CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc-----
Confidence 0000 002346778888888999999999999999998665443332211 110
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce-eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|.-+|++++|.|..-.-+|++++|-.++||++.
T Consensus 316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 111222345789999999999 99999999987654 455788999999999999766778888999999999996
Q ss_pred cce--------------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 878 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 878 ~~~--------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.+- ....+++|...+..+.++-.+.+.... .+..++|... .
T Consensus 392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~ 446 (720)
T KOG0321|consen 392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------V 446 (720)
T ss_pred Cchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------c
Confidence 542 223445666666666555443332221 3445555432 3
Q ss_pred EEEEcCCCcEEEEE---e--CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc-----------CCeEE
Q 001318 944 RVQFHQDQIHFLVV---H--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1007 (1101)
Q Consensus 944 ~~~~s~dg~~la~~---~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~-----------dg~v~ 1007 (1101)
.++..|++.-...+ . .-.|...+....+........+|-..|....+++-+..+++.+. ++.+.
T Consensus 447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~ 526 (720)
T KOG0321|consen 447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN 526 (720)
T ss_pred chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence 34444444444331 1 12344555544444433333456677777778777777888887 88888
Q ss_pred EEEcCC
Q 001318 1008 VFSAAN 1013 (1101)
Q Consensus 1008 vwd~~~ 1013 (1101)
+|....
T Consensus 527 s~~s~l 532 (720)
T KOG0321|consen 527 SPNSSL 532 (720)
T ss_pred cccccc
Confidence 887654
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=199.48 Aligned_cols=249 Identities=13% Similarity=0.198 Sum_probs=195.0
Q ss_pred cccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
...+|.+.+|.|+|. .+++++....++.||+.+.+.. .......-....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~----------------------k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT----------------------KLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccc----------------------cccCCCCcccchhheeEecC
Confidence 346889999999999 8888888899999988543221 11111111234577889999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc-Cee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 893 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~ 893 (1101)
++++|+..+ .|.|.+....+++.+..++ ..+.|..++|+. |++.|.+.+.+|.|++||+....++.++....+ .-+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999998887 567899999998 888888888999999999999999988864322 236
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccc-cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE---eCCeEEEEEcCC
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 969 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~v~vwd~~~ 969 (1101)
++|.|++|.+||+|+..|.|.|||.++.... ..+++.....-. ..|+++.|++|+..||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 7888899999999999999999997652211 111222222111 378999999999999983 567899999999
Q ss_pred ceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 970 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 970 ~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
......|.... .-+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 98888886532 25679999999999999999999999999864
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.3e-21 Score=187.91 Aligned_cols=246 Identities=17% Similarity=0.248 Sum_probs=187.0
Q ss_pred cccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE
Q 001318 735 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 813 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~ 813 (1101)
.+|.-.|.++.|-|- .-++.+++-|..+++||.++-+.. .. + ..++.|++-++
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham 151 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM 151 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence 347888999998884 445667777999999997542110 00 1 14566777777
Q ss_pred ecCCC---EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeee---
Q 001318 814 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL--- 885 (1101)
Q Consensus 814 s~dg~---~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l--- 885 (1101)
||-.. ++|+|. +-+|++-|+.+|...+++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 77543 667777 6789999999999999999999999999999976778899999999999999753 333333
Q ss_pred -----------cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 886 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 886 -----------~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+|.+.|++++|+.||.++++++.|..+++|+...|+........+...... ..-..+. +.+...+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence 3577899999999999999999999999999999887544333222222111 1111233 3333333
Q ss_pred E-EEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 955 L-VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 955 a-~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
+ .-.++.+.++++-.+..++.+. .|...|.|.+|.|+=+.+.+|..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence 3 3467999999999999999987 67889999999999999999999999999986
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.5e-21 Score=204.00 Aligned_cols=456 Identities=11% Similarity=0.152 Sum_probs=285.8
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
.|..++|-|||..|+++++ ..+.|||+..|..+. .+++|.+.|+|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 7899999999998777655 789999999998887 4999999999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 506 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 506 (1101)
.|..|.+|+-+-...++ + .|.+.|.|+.|+|-.. .|+||+-. ..-+|........+ .+ ....+.+.+|
T Consensus 73 aDK~VI~W~~klEG~Lk----Y-SH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK----Y-SHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee----e-ccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999976543332 2 5999999999999988 68888753 45688865544322 11 2234555555
Q ss_pred cCCccEEEEEecCCcEEEEecCCCCceeeec---CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 507 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
..||++++.|-.+|+|.+=+-.. +....+. +.+.+|.+++|+|... .| ....+++.....
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q 203 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ 203 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence 68889999999999998875443 3333333 3556788888877653 01 113566777778
Q ss_pred cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCccc
Q 001318 584 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 663 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1101)
++.+|.+. |+.+..-+.-+ ....|+.+.++|.+++.|+.|+.+.+|.- .|.. +-++
T Consensus 204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~Gvr-LGTv------------------- 259 (1081)
T KOG1538|consen 204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVR-LGTV------------------- 259 (1081)
T ss_pred eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeE-Eeec-------------------
Confidence 88888874 55444322221 13568999999999999999999999853 2201 0000
Q ss_pred ccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEE
Q 001318 664 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~ 743 (1101)
......|..
T Consensus 260 -----------------------------------------------------------------------g~~D~WIWt 268 (1081)
T KOG1538|consen 260 -----------------------------------------------------------------------GEQDSWIWT 268 (1081)
T ss_pred -----------------------------------------------------------------------cccceeEEE
Confidence 003457788
Q ss_pred EEEcCCCceEEeeecCceEEeeeccccccCC---------------------CCc---e---------------ee---e
Q 001318 744 LIFTNSGNAILALASNAIHLLWKWQRTERNS---------------------SGK---A---------------TA---S 781 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~---------------------~~~---~---------------~~---~ 781 (1101)
++..|+++.++.++.||+|..|++...+... .++ . ++ .
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp 348 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP 348 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence 8888888888888888888888864321000 000 0 00 0
Q ss_pred ecCccccCCCccccccccCC--C-CCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEE--ec
Q 001318 782 VAPQLWQPPSGIMMTNDVTD--S-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP 856 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~--~-~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--sp 856 (1101)
..+.++...++.......+. . ...-...-+. -.+..++.+.+..+..+|...-. .+... -.+-|.-+.. -|
T Consensus 349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlV--Vc~~HiVlCqekrLqClDF~Gvk-~ReW~-M~S~iRYikV~GGP 424 (1081)
T KOG1538|consen 349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLV--VCANHIVLCQEKRLQCLDFSGVK-EREWQ-MESLIRYIKVIGGP 424 (1081)
T ss_pred ceEEEEeccccccccchhHHHHHHHhhccceEEE--EEcCeEEEEcccceeeecccchh-hhhhh-HHHHHHhhhhhcCC
Confidence 01223333222211100000 0 0000011111 12345566666677777764211 11100 0011111111 12
Q ss_pred CCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
.+..-|+.|..||.|+-.=+.+.-.+- +......|.|+..+...+.||+....++..++|+.+++. +.+.+
T Consensus 425 ~gREgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp---- 495 (1081)
T KOG1538|consen 425 PGREGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP---- 495 (1081)
T ss_pred CCcceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC----
Confidence 255678889888877544344332222 233456799999999999999999999999999999653 22222
Q ss_pred CCCCCCeEEEEcCCCcEEEE-EeCCeEEE
Q 001318 937 PTAQSDTRVQFHQDQIHFLV-VHETQLAI 964 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~-~~d~~v~v 964 (1101)
.+.+++|.....-+.+ +..|.+.|
T Consensus 496 ----g~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 496 ----GANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ----CCceEEeeccccceEEEecCCceEE
Confidence 5688888876554444 44454433
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.1e-20 Score=205.60 Aligned_cols=294 Identities=12% Similarity=0.138 Sum_probs=205.1
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+..+++++.|+.|++||+.+++.+. .+..| ..+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~-~~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVG-QRPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECC-CCCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999987655 34444 34678999999984 346778899999999999998887765544
Q ss_pred eEEEeeeecCCccEEE-EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
+..++|+ ++++.++ +++.|+.|++||+.+.+....+... . ....++++|++.+++
T Consensus 75 ~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V---------------------EPEGMAVSPDGKIVV 130 (300)
T ss_pred ccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C---------------------CcceEEECCCCCEEE
Confidence 4556664 4556554 4566899999999875544333211 1 223456666667788
Q ss_pred EEeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccccccccccccccC
Q 001318 578 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 578 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
++..++ .+.+||..+++.+..+.... ...+++|++++++|++++ .++.|++||+.++ +..+.+..
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~--------- 197 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITF--------- 197 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeee---------
Confidence 877664 56778998887766554322 356799999999886554 5899999998776 22211100
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
T Consensus 198 -------------------------------------------------------------------------------- 197 (300)
T TIGR03866 198 -------------------------------------------------------------------------------- 197 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
...+. .. .......++|+|
T Consensus 198 -----------~~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 198 -----------EIPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred -----------ccccc------cc--------------------------------------------ccCCccceEECC
Confidence 00000 00 011123467788
Q ss_pred CCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE-eccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
++++++++. ++.+.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 888755543 6779999998888776553 345789999999 88888776 56899999999999999998755 555
Q ss_pred eEEEEcC
Q 001318 893 TGLAFSH 899 (1101)
Q Consensus 893 ~~l~~s~ 899 (1101)
++++|+|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8888875
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=197.86 Aligned_cols=285 Identities=16% Similarity=0.231 Sum_probs=215.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCcc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+.|+++.|+|....+++++.|+.++||.++.. ..++.+.... .++.+++|.|+|. .+++++....++.||+.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a- 290 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA- 290 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecCCCceEEEecccceEEEEeecccc-
Confidence 47888888999899999999999999988643 3455554433 3789999999999 8999999999999999776
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+..+ +.+..
T Consensus 291 k~~k-------------------~~~~~---------------------------------------------------- 299 (514)
T KOG2055|consen 291 KVTK-------------------LKPPY---------------------------------------------------- 299 (514)
T ss_pred cccc-------------------ccCCC----------------------------------------------------
Confidence 2111 00000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
......+..+.+++++++|+..|..|.|.+... .++..+...
T Consensus 300 ----------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha----------------------kT~eli~s~ 341 (514)
T KOG2055|consen 300 ----------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA----------------------KTKELITSF 341 (514)
T ss_pred ----------------CcccchhheeEecCCCCeEEEcccCceEEeehh----------------------hhhhhhhee
Confidence 002245667888999999999999999987644 333333221
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.-.+.|..++|+.|++.|++.+ +|.|++||+....+++++....+ .-++++.|+ ++.|||+|+..|.|-|||.
T Consensus 342 ----KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 342 ----KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred ----eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 1467899999999999877766 89999999999999988864322 346788888 8999999999999999997
Q ss_pred ec------ceEeeeecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 877 RV------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 877 ~~------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+ .+++..+..-...|+++.|++|++.||.+|. +..+++-.+.+... ..-.......-+.|++++||
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-----FsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-----FSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-----eccCCCCCCcccceEEEEec
Confidence 64 3566666667788999999999999987774 56789888876332 11111112222578999999
Q ss_pred CCCcEEEEE-eCCeEEEEEcC
Q 001318 949 QDQIHFLVV-HETQLAIFETT 968 (1101)
Q Consensus 949 ~dg~~la~~-~d~~v~vwd~~ 968 (1101)
|.|.++|++ .+|++.+|.+.
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 999999997 77899999874
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.8e-21 Score=202.12 Aligned_cols=313 Identities=17% Similarity=0.209 Sum_probs=228.9
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
...+.||.+.|.+|...|.|. .|++|+.||+|+||.+.+|.|++++. ..+.|.|++|++.++...|+.+-. ..+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEE
Confidence 345789999999999999998 89999999999999999999999887 567899999999888655655544 44555
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE----eCCCcEEEEECCCCce-----
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----- 595 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----- 595 (1101)
-+..-+..+.... ....|.++ ..++.+..|.-.....
T Consensus 469 vnp~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence 5433221111000 00112222 2356777886542211
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhh
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 672 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1101)
...+. +...|..+.|+..|.||++..-+ ..|.|.++... ..... |
T Consensus 515 ~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~P------------------F---------- 562 (733)
T KOG0650|consen 515 CIVIK---HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQSP------------------F---------- 562 (733)
T ss_pred EEEEe---cCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccCc------------------h----------
Confidence 12222 34469999999999999987654 44666655433 11000 0
Q ss_pred hcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce
Q 001318 673 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 752 (1101)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 752 (1101)
....+.|.++.|+|...+
T Consensus 563 --------------------------------------------------------------~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 563 --------------------------------------------------------------RKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred --------------------------------------------------------------hhcCCceeEEEecCCCce
Confidence 114467889999999998
Q ss_pred EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEE
Q 001318 753 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 831 (1101)
Q Consensus 753 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vw 831 (1101)
+++++.. .|+|||+. .+.++...+. ....|..++++|.|..|+.++ |+.+..|
T Consensus 581 lfVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 581 LFVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWF 634 (733)
T ss_pred EEEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence 8888776 67888763 3333333333 366789999999999999999 9999999
Q ss_pred ECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee------cc---eEeeeecCcccC----eeEEEE
Q 001318 832 NMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAF 897 (1101)
Q Consensus 832 d~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~------~~---~~~~~l~~h~~~----V~~l~~ 897 (1101)
|+.- .+..+++..|...+++|+|++ .-.++|+|+.||++.|+.-. .. -.+..+.+|... |..+.|
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence 9974 356788899999999999999 78899999999999998532 11 245778899876 999999
Q ss_pred cCCCCEEEEEeCCCceEEE
Q 001318 898 SHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iw 916 (1101)
+|...+|+++|.||+|++|
T Consensus 714 HP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCCCceEEecCCCceEEee
Confidence 9999999999999999998
No 142
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.5e-21 Score=200.11 Aligned_cols=210 Identities=19% Similarity=0.308 Sum_probs=172.4
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCcee-------eeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV-------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~-------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
...|.+.|..+..-| +...+|+.+..+.|.|||+.+.... .+..+|.||.+.=+.++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 467999999999999 5566777888999999998754322 223368899998888999998776 7999999
Q ss_pred CCcEEEEeCCCCc-------eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC--CCCceeeecCCCCceeE
Q 001318 475 DKTIKVWDATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 475 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 545 (1101)
|++|++||+.... ....+.+|...|..++|++... .++.+++.|+.+.+||++ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999997543 2457889999999999988655 689999999999999999 45555666778888888
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVS 623 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 623 (1101)
++|+|-+. ..|++|+.|++|.+||+++. +++.++.+|. ..|.+|.|+| ....|+++
T Consensus 278 ~~fnp~~~--------------------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~--dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 278 VAFNPFNE--------------------FILATGSADKTVALWDLRNLNKPLHTFEGHE--DEVFQVEWSPHNETVLASS 335 (422)
T ss_pred EEeCCCCC--------------------ceEEeccCCCcEEEeechhcccCceeccCCC--cceEEEEeCCCCCceeEec
Confidence 88877665 56888999999999999875 4567777554 4799999999 56789999
Q ss_pred eCCCcEEEEEecC
Q 001318 624 TNDNGIKILATSD 636 (1101)
Q Consensus 624 ~~dg~i~iw~~~~ 636 (1101)
+.|+.+.+||+..
T Consensus 336 g~D~rl~vWDls~ 348 (422)
T KOG0264|consen 336 GTDRRLNVWDLSR 348 (422)
T ss_pred ccCCcEEEEeccc
Confidence 9999999999864
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=1.3e-19 Score=192.13 Aligned_cols=174 Identities=13% Similarity=0.214 Sum_probs=129.4
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|..++|-|||..|+.+.. ..+.+||...|..+. ++++|.+.|+|++|+.||+ .+++|+.|+.|.+|..+-..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence 8999999999999887754 459999999998776 7999999999999999999 79999999999999854322
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+-.+ .|.+.|.|+.|+|-. +.|++++. ...-+|........ .......+.+++
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V~-----------------------K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSVS-----------------------KHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcch-hhccccChhhhhHH-----------------------hhhhheeEEEee
Confidence 2233 399999999986654 68888876 34566755432111 111112455666
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCC
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~ 617 (1101)
|..||.+++.|-.+|+|.+-+.. ++....+. ..+...+|.+++|+|..
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 77777799999999999998754 44444443 33344678999999854
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.2e-20 Score=180.04 Aligned_cols=268 Identities=19% Similarity=0.373 Sum_probs=188.4
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC----ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
.+|.+-|.++.|.+-|+ .+++|+.|++|+|||..+. .+....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999 6999999999999997543 35567789999999999998888999999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
|.-.. ..+..+ =+-|.. ..++. ..
T Consensus 88 WEE~~----~~~~~~---------------------------------------------~~~Wv~-----~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAH---------------------------------------------GRRWVR-----RTTLV--DS 111 (361)
T ss_pred eeecc----cccccc---------------------------------------------cceeEE-----EEEee--cC
Confidence 95321 111111 011221 11221 22
Q ss_pred CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 605 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 605 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
...|+++.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 23588999999 57899999999999999875541
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
.+.-|.+.. ++..+..|...
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~~pp~~-------------------------- 167 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVIDPPGK-------------------------- 167 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhccCCccc--------------------------
Confidence 112222221 00000000001
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC---CCEEEEEeCC------eEEEEEC
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM 833 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d---g~~la~~sdg------~i~vwd~ 833 (1101)
+.....|+.|++. ..+||+|+|. .+.||..
T Consensus 168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 2222333333321 2356666643 6777776
Q ss_pred CCC----ceeeEecCCCCCeEEEEEecCCC---cEEEEEeccCeEEEEEeecc--------------------eEeeeec
Q 001318 834 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK 886 (1101)
Q Consensus 834 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~ 886 (1101)
..+ ..+.++.+|...|+.++|.|.-| .+||+++.|| |+||.+... +.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 533 34556789999999999999644 5899999999 999998731 2456678
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+|.+.|+.+.|.--|..|++.|.||.||+|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997654
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-20 Score=180.65 Aligned_cols=274 Identities=12% Similarity=0.182 Sum_probs=207.0
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
|..+..++.+.. -.|+.|++.|.+ ||+|..||.|.|||+.|...-. ++.+|..+|++++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEEE
Confidence 555566777666 899999999995 9999999999999999865332 6899999999999
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE- 493 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 493 (1101)
||+||+.|+|+|.|..|++||+..|.+++++ . ...+|+.+.|.|-..+..++ .-.+..-.+-++..++.. .+.
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r---f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~-~Lp~ 146 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R---FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHS-VLPK 146 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE-E---ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCcee-eccC
Confidence 9999999999999999999999999877644 2 46899999999987763444 444444555555543221 111
Q ss_pred CcccCeE--EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC-CceeEEEEccCCceEEeccccC--------
Q 001318 494 GHEAPVY--SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKR-------- 562 (1101)
Q Consensus 494 ~h~~~v~--~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~-------- 562 (1101)
...+..+ .-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....+.
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 1111111 1111246777999999999999999999988887776665 7788888888887444333222
Q ss_pred ------------------------ceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 563 ------------------------SLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 563 ------------------------~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
....++|+.+|.++++++ .-..++||.-..|.+++.+.+..+. ....+.|+|-.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~r 305 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVR 305 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecccccce
Confidence 233578999999998877 4567999999999999999876542 46778999988
Q ss_pred CEEEEEeCCCcEEEEEecCc
Q 001318 618 CLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++- ..|.+++|.....
T Consensus 306 p~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 306 PIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeec-cCCceEEEEeecc
Confidence 877777 6799999987543
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=6.2e-21 Score=202.34 Aligned_cols=290 Identities=12% Similarity=0.111 Sum_probs=207.0
Q ss_pred ceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEE
Q 001318 751 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 829 (1101)
Q Consensus 751 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~ 829 (1101)
..|+.+.++|.|.++|.....+. ++..++.. . ..|...|..+.|.|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 45677777899999987543332 11111111 1 23999999999999777888887 89999
Q ss_pred EEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------------------------
Q 001318 830 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 880 (1101)
Q Consensus 830 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--------------------------- 880 (1101)
+||+++.+++.. +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999988877 899999999999999889999999999999999985321
Q ss_pred EeeeecCcccCeeE---EEEcCCCCEEEEEeC-CCceEEEeCCCcccccc-eeeec--CCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQI--PTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+........ ..... ...+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223445566666 666789999999998 99999999987432110 01111 1111122245677888888888
Q ss_pred EEE-EeCCeEEEEEcCCceeeeeccCCCCCC--CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 954 FLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~--~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
|.+ +.|+.|+.|++.+...-......++.. --..-..|||+.+|++|+.|..+++|.+.+.+.--.+. -||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence 888 799999999998765433332223211 11222469999999999999999999998776432221 143
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+ |. +++|.|.+-.-++++++|..+++|++.++-
T Consensus 360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence 333 44 788888766678999999999999996654
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.4e-22 Score=217.60 Aligned_cols=232 Identities=16% Similarity=0.249 Sum_probs=203.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|...|.++.|++ +..+|+.|+.+|+|++||++.++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 677777887777788899998 78888999988888888999999999999999 8999999999999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
++|.+|...+.+|.|+|-+.+.++++.|+.+++||++.. -+.....+|. ..+..++|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-----Gc~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-----GCSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhcc-----CceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 999999999999999999999999999999999999852 2455556655 378899999999999994 6799
Q ss_pred EEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEE
Q 001318 962 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
++|||+..|+....|. .|...+.++.|.|..-+|++|+.|++|++||+++.+.+...... ..+ |. +.+
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999988766622 222 55 899
Q ss_pred EeCCCCCEEEEEecCC
Q 001318 1042 AHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg 1057 (1101)
|.| ++..+++|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 678787776554
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.6e-22 Score=215.68 Aligned_cols=234 Identities=12% Similarity=0.307 Sum_probs=204.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.|...|.|+..-..++ .+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++..+|
T Consensus 26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll 85 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL 85 (825)
T ss_pred hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence 4888899998866777 59999999999999986544332 378999999999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 502 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v 502 (1101)
++|+.+|+|++||++.++.++ +|.||...+..+.|+|-+. +.++|+.|+.+++||++...|.+.+.+|...|..+
T Consensus 86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l 160 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL 160 (825)
T ss_pred cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence 999999999999999988777 7999999999999999999 78999999999999999999999999999999999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.| .++|.++++++.|.++++||...++....|..|...+..+.|.| ..-.+.+|+.|
T Consensus 161 ~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp---------------------~e~Lla~Gs~d 217 (825)
T KOG0267|consen 161 RL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP---------------------LEVLLAPGSSD 217 (825)
T ss_pred ee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCc---------------------hhhhhccCCCC
Confidence 98 56779999999999999999999998888888877666665544 44468889999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
+++++||+++.+.+...... ...|.+.+|+|++..+++|...
T Consensus 218 ~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 218 RTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence 99999999988887776644 5579999999999999988654
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.1e-20 Score=195.38 Aligned_cols=323 Identities=13% Similarity=0.264 Sum_probs=232.3
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC--EEEEEeCCCcEEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI 631 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i 631 (1101)
.++.||.+ .+.+++.+|.|.+|++|+.||+|+||.+.+|.++.++...+. |.|++|+|.+. .||++.. +.+.|
T Consensus 394 lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEec-CceEE
Confidence 34555554 889999999999999999999999999999999999987654 99999999654 4555544 44666
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceee----c
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E 707 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 707 (1101)
.+..-|.+..... +. ..+.+ .
T Consensus 469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~ 493 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES 493 (733)
T ss_pred eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence 6654441111100 00 00000 1
Q ss_pred cCCCcceeeeccccCCCc--cccccccCccccccceEEEEEcCCCceEEeeecC---ceEEeeeccccccCCCCceeeee
Q 001318 708 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
..+..+..|.-....+.. .+..+. |...|..+.|+..|.+|++...+ ..|.|+++.....
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------- 558 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------- 558 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------
Confidence 112345556544322211 122222 77899999999999999988764 5677776643211
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
...+.. ..+.|.++.|+|...+|++++...|++||+.....++.+......|..++++| .|.-|
T Consensus 559 -------------Q~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl 622 (733)
T KOG0650|consen 559 -------------QSPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL 622 (733)
T ss_pred -------------cCchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence 011111 46779999999999999999999999999999888888887788899999999 88888
Q ss_pred EEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCC
Q 001318 863 AIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
+.|+.|+.+..||+.- .+..+++..|...|++|+|++.-.++++|+.||++.|+--.-.. ....
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~-------Dl~q-------- 687 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN-------DLLQ-------- 687 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh-------hhhc--------
Confidence 8999999999999975 46778899999999999999999999999999999988522100 0000
Q ss_pred CeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCC----CCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 942 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~----~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
+...+..-...+|. ..|..+.|.|..-+|++++.||+|++|
T Consensus 688 ---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 ---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ---------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 00011111122443 348999999999999999999999998
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.5e-20 Score=190.38 Aligned_cols=258 Identities=19% Similarity=0.291 Sum_probs=195.2
Q ss_pred CCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCe
Q 001318 344 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 421 (1101)
+...|++++|+|... .++|+|..-|.|-+||+.+.+......+ .+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 789999999999876 7899999999999999975444332111 4789999999999999 6778
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeE
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 500 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 500 (1101)
+.+.|.||+|++-|++++.. .....+..-...+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999998642 22223333455788899998888 577777777999999998665 566677888999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCcee----eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+++++|-.. .++++++.|++.+|||++...... ....|.. .+....|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999988655 799999999999999998754332 2223333 45555555655679
Q ss_pred EEEeCCCcEEEEECC----CCceeEEEcCCCCC---CCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccc
Q 001318 577 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 642 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 642 (1101)
++.+.|..|+|||.. .-.+..++.+.... -......|.|+..++++|..-..|-|+|-..+ +.+.
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~ 456 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVC 456 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEee
Confidence 999999999999983 33444444422211 12345789999999999999999999987666 4333
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3e-20 Score=185.02 Aligned_cols=267 Identities=15% Similarity=0.234 Sum_probs=195.0
Q ss_pred CCcceeecccCCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCccee-EeeeeeeeecCCCCcccccccccCCCCCeE
Q 001318 334 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN 411 (1101)
Q Consensus 334 ~~~~~~~~~~h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 411 (1101)
.|........|.+.|+.+.-++-|+ .+.|+=+..|.|.|||+...-.. ..-.+.+-+ +...+...+.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3555556777999999999988753 35666677899999998542111 000000000 11112225789999999
Q ss_pred EEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---c
Q 001318 412 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 487 (1101)
Q Consensus 412 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~ 487 (1101)
+|+||| .-..|++|.--+.|++|...+|.-......+.+|...|-.++|||..+. +|+|||-||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 3345778877888999999998765445567889999999999998887 8999999999999999988 3
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
++.+ +.|.+.|+.+.|+... .+|++|+.||++++||++.- ..+..+..|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 4444 7899999999996544 49999999999999999863 44557777888888888877665
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCce----------------eEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCC
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 627 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg 627 (1101)
..|+++|.|.+|.+||+....- .+.+-.|.+...+..+.|++. ..+|++.+.||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 4688899999999999853221 111222444456788999984 44666666666
Q ss_pred c
Q 001318 628 G 628 (1101)
Q Consensus 628 ~ 628 (1101)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 4
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=9.9e-20 Score=183.48 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=140.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
...+|..+.|.+.....+|||+.|..|+||.++.++.-.. .....+ ...+..|...|+++.|+|+|++||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~~~V~y-~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------DMKVEY-LSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------ceeEEE-eecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998875699999999999999876543220 001111 226899999999999999999999
Q ss_pred EEEcCCeEEEEEcc--------C-----CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 424 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 424 s~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999766 3 111233456889999999999999999 89999999999999999999999
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+.+|...|..++|. +-++++++-+.|...+.+.+..
T Consensus 160 ~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eccccccccceeecc--hhhhhhhhhccCcccceeeeee
Confidence 999999999999995 4458999999998666665543
No 153
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-20 Score=205.13 Aligned_cols=284 Identities=15% Similarity=0.251 Sum_probs=208.9
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcC-CCceEEeeecCceEEeeeccccccCCCCce
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA 778 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 778 (1101)
+...++.++. ..++++.+........+....-..+.....+..+.|.. +.++|++++.+|.|.+||+.....
T Consensus 50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------ 122 (839)
T KOG0269|consen 50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------ 122 (839)
T ss_pred CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence 3344444443 45667766654443333221100011112334455553 466789999999999999854210
Q ss_pred eeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec
Q 001318 779 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 779 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp 856 (1101)
...+ ..+. .|...+.++.|++-. .+|++|+ ||+|++||++...-..++.+....|+.|.|+|
T Consensus 123 -------------nk~l-~~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 123 -------------NKLL-TVFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred -------------chhh-hHhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 0010 0122 389999999999865 5677888 99999999999888889988888999999999
Q ss_pred CCCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC
Q 001318 857 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 857 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
..+..++++.+.|.+++||++. .++..++.+|.++|.++.|+|++.+|||||.|++|+|||+.+++.....++.+.
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--- 263 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--- 263 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence 8899999999999999999986 467788899999999999999999999999999999999998766555555443
Q ss_pred CCCCCCCeEEEEcCCCcEE-EE---EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-CCCEEEEEEcCCeEEEEE
Q 001318 936 TPTAQSDTRVQFHQDQIHF-LV---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~l-a~---~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd 1010 (1101)
.++.++.|-|+..+. |+ ..|-.|+|||+...-.... ....|...++.++|-. |-..|.+++.||+|..-.
T Consensus 264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~-t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA-TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccce-eeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 478999999987654 44 2688999999986543322 2237899999999965 566789999999988766
Q ss_pred cCCc
Q 001318 1011 AANL 1014 (1101)
Q Consensus 1011 ~~~~ 1014 (1101)
++++
T Consensus 339 ~kna 342 (839)
T KOG0269|consen 339 FKNA 342 (839)
T ss_pred hhcc
Confidence 5544
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-19 Score=174.45 Aligned_cols=259 Identities=14% Similarity=0.236 Sum_probs=193.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 420 (1101)
+|.+-|.|+.|.+-|++ +|||+.|++|.|||.......-.. ......|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence 58899999999999997 999999999999997544322110 113678999999999977 699
Q ss_pred eEEEEEcCCeEEEEEcc------CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-----
Q 001318 421 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 489 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~------~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 489 (1101)
.+|+++.|+++.||.-. .+..-....++......|+++.|.|....+.+++++.||.+|||+.-...-+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 1222334446777888999999999988779999999999999987654322
Q ss_pred -EEec-------CcccCeEEEeeeecCC-ccEEEEEecC-----CcEEEEecCCCC----ceeeecCCCCceeEEEEccC
Q 001318 490 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 490 -~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~~~d-----g~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~ 551 (1101)
..+. .+..+-.|+.|+++.- ..+|+.|+.+ +.++||...... ...++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 3556677888875432 2466766655 478899776544 23356788889999999987
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------eeEEEc-CCCCCCCcCeEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 613 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 613 (1101)
-.+.+ ..+++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 3588999999 9999987311 122222 2344558999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEec
Q 001318 614 NKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 614 s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999754
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3e-20 Score=181.75 Aligned_cols=266 Identities=16% Similarity=0.254 Sum_probs=182.4
Q ss_pred cCCCCcEEEEEec----CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 343 NQGSSPMSMDFHP----VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 343 ~h~~~v~~~~~sp----dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.|+.+|..++|.+ +...++|+.+. ..+.+|+......+. .++ ...-..|...-+.++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--~lq------------~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--LLQ------------SYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--eee------------eccCCCCCcceEEEEEEec
Confidence 4889999999985 33335665554 688888876543221 111 1123458888999999885
Q ss_pred C----CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 G----SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 g----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
. .+||+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 479999999999999999988766 58899999999999999988 8999999999999999999999987
Q ss_pred -cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce-----------EEecc-
Q 001318 493 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-----------TYQGF- 559 (1101)
Q Consensus 493 -~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----------~~~~~- 559 (1101)
.||.+.|.++.|+ .+|.++++++.|.+|++|++...+-...++. +..|++++.. .+...
T Consensus 177 ~egHrdeVLSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred cccccCcEEEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCccccccccccccc
Confidence 5699999999985 5557999999999999999985432221111 1233333321 00000
Q ss_pred -ccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcee-------------EEEcCCCCCCCcCeEEEccCCCEEEEEe
Q 001318 560 -RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLL-------------TSIDADGGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 560 -~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
+...+.|+.| -|+++++-+-++.|..|.. +-++.+ ..+............+|.|-+++||.|.
T Consensus 249 iHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 0112222222 2478899888899999987 222221 1122111111122345566677888888
Q ss_pred CCCcEEEEEecCc
Q 001318 625 NDNGIKILATSDG 637 (1101)
Q Consensus 625 ~dg~i~iw~~~~~ 637 (1101)
..|.|.+||+.+.
T Consensus 327 q~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN 339 (385)
T ss_pred CCCcEEEEECCCC
Confidence 8888888887665
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.6e-20 Score=191.35 Aligned_cols=254 Identities=13% Similarity=0.169 Sum_probs=190.0
Q ss_pred CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc------cccccccCCCCCeEEEEEecC-CCeEEEEEcCC
Q 001318 357 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH 429 (1101)
Q Consensus 357 g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~ 429 (1101)
|+| +|.|+.|..|.|||+.-...+. +...++..... .......+|++.|.+++|+.+ ...||+||.|.
T Consensus 192 gNy-vAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GNY-VAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cce-EEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 564 9999999999999986432221 11111111111 112235589999999999984 66899999999
Q ss_pred eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCcccCeEEEeeeecC
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~~ 508 (1101)
+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..++ ..+.|..++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 99999999999766 57789999999999998877 8999999999999999853322 2333 45678889997755
Q ss_pred CccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEE
Q 001318 509 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 587 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 587 (1101)
. ..++++..||+|+-+|++.. ++..++..|...|.+++++..-. +++++++.|+.|++
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL 400 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence 4 57888899999999999987 67888999999999999887665 57899999999999
Q ss_pred EECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccc
Q 001318 588 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 588 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
|++..-.........-......|.++.|+- -.++.|+..+.+++||+.+.....
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 998765443222211122335667777754 467788888889999998874333
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.3e-20 Score=180.09 Aligned_cols=301 Identities=16% Similarity=0.217 Sum_probs=206.0
Q ss_pred ccccceEEEEEcC----CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 736 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 736 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
.|..+|..++|++ +...+++......+.+|+..... +..+........+......+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfytc 95 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYTC 95 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEEE
Confidence 3777888898874 33334444455577777763211 11111111122366667777
Q ss_pred EEecCC----CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-
Q 001318 812 ALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL- 885 (1101)
Q Consensus 812 ~~s~dg----~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l- 885 (1101)
+|+-|- -++|+|+ -|.|+|.|+.++++...+.+|...|+.+.|.|.+.++|++++.|..|++|++++..|+..+
T Consensus 96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 777543 3677766 7999999999999999999999999999999988899999999999999999999999887
Q ss_pred --cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceee-------------ecCCCCCC-------CCCCCe
Q 001318 886 --KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------QIPTGRTP-------TAQSDT 943 (1101)
Q Consensus 886 --~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~-------~~~~v~ 943 (1101)
.+|.+.|.++.|+.+|.+|+|+|.|.++++|++...+....... .....|.+ ....|.
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999999999999999999999999985332111100 00001100 001222
Q ss_pred EEEEcCCCcEEEE-EeCCeEEEEEcC-CceeeeeccC-----------CCCCCCeeEEE--EcCCCCEEEEEEcCCeEEE
Q 001318 944 RVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVP-----------RESSAPITHAT--FSCDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 944 ~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~~~~~~-----------~~h~~~i~~l~--~spdg~~l~s~s~dg~v~v 1008 (1101)
++.|- |.++++ +.++.|..|..- -.+.+....+ .-....|.-+. |.|-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 22221 567777 788899999872 2222111110 01134455554 5566889999999999999
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
||++..+....-. +.+...+.-|+ ..+|+. |+.+|+..++|++|.-||..
T Consensus 334 wdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999887742211 22221233355 788888 78999999999999999864
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.1e-17 Score=191.35 Aligned_cols=371 Identities=25% Similarity=0.424 Sum_probs=269.7
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc-eeEeeeeeeeecCCCCcccccccccCCC-CCeEEEEE-e
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 416 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 416 (1101)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 35569999999999999995 8888899999999998876 3321 33322 47777777 8
Q ss_pred cCCC-eEEEEEc-CCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEe
Q 001318 417 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 417 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 492 (1101)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 5778999999999999999 6777775 999999999999999999
Q ss_pred cCcccCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.+|...|.++.|. +++. .+++++.|+.|++||........ .+..+.... ...|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------------------~~~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV----------------------VSSFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce----------------------eEeEC
Confidence 9999999999997 5555 55565999999999877444433 233333221 11566
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccc
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
+++..+++++.|+.+++|+...... +..+. .+...+.++.|.|++..+++++.|+.+.+|+..+.. ......
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence 6666788999999999999987665 44442 334578899999988888889889889999765541 110000
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCee
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 809 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~ 809 (1101)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222334
Q ss_pred EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEE-EeccCeEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.+.+.+++..++.+ . |+.+.+|+.............. .+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 44442122333333 2 5667777777665222222222 288899988 6 55554 7899999999999888777766
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.+...+....+++++..+++++.++++++|+..+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547799999999999999999999999999877
No 159
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.4e-20 Score=201.23 Aligned_cols=270 Identities=13% Similarity=0.192 Sum_probs=198.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 423 (1101)
+....++...++-..++++|- ....|+.+........-.+ ... .-..-.-.+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~--~~k----------~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNH--RFK----------TKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCCcceee--ecc----------cccceeeehhhcccccchhhhhe
Confidence 456677777888776444443 4566666654322111000 000 0001112456677876 788999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~ 503 (1101)
|++..|.|.+||+.....-+....|..|...|+++.|++.... +|++||.||+|++||++..+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333368899999999999998887 899999999999999999999999999999999999
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
|++.. +..++++...|.+++||++... ....+..|.++|.++.|+| ++.+|++||.|
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---------------------nr~~lATGGRD 241 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---------------------NREWLATGGRD 241 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC---------------------CCceeeecCCC
Confidence 98865 5799999999999999998754 4556777777666655555 44689999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC-EEEEEe--CCCcEEEEEecCcccccccccccccccc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
++|+|||+.+.+.......+ ...+|.+|.|-|+.. .|++++ .|-.|+|||++...-+...+..|...+.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 99999999866533222211 234688999999655 455543 4788999999988788888888877544
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=3.6e-19 Score=181.97 Aligned_cols=314 Identities=12% Similarity=0.147 Sum_probs=225.9
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC----ceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
+-......+-+.++|++++|+|..+..++++|+.-|.|-+||+.+.+ ....+..|..+|.++.|+|...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------- 247 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------- 247 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence 33344455668889999999999988899999999999999996332 3455677778888888887765
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
..+++.+.||+|++-|++.+.....+........+.++.|+.+...++.+..=|.+.+||.+++...
T Consensus 248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 5799999999999999988765444443333345677889888888888888889999999988665
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
+..+.-|...+... +++|.. ..++++++.|++.+|||+..
T Consensus 315 ~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 315 YENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred chhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeeehhh
Confidence 66666665543332 333333 57889999999999999987
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
....... .+ ....|...|.++.|||++-.|++.+.|..|+|||..- +.-|+...+.....-..
T Consensus 355 l~~K~sp-~l--st~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 355 LRGKASP-FL--STLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNRT 417 (498)
T ss_pred hcCCCCc-ce--ecccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCcc
Confidence 6654431 11 1234899999999999988899999999999999630 11122222222211000
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEE-EEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+ .--.....+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|.+..++|-|+..|.|+||--+
T Consensus 418 ~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 G--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred c--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 0 011233468999999999998 67899999998888888755443 5655 48999444466666778899998644
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.7e-19 Score=180.71 Aligned_cols=196 Identities=16% Similarity=0.241 Sum_probs=156.9
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeee------------------ccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
-|+|+|.|+.|..|.|||+.--..+.+..+| .+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 4789999999999999998743333332222 379999999999988877 899999999999
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998754 48999999999999999985332211111123345555544443
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..++++..||+|+-+|++.. +++.+++.|.. .|.++++++ ...++++++.|+.|++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 46778889999999999875 88999988766 799999998 4568899999999999998754
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.8e-19 Score=182.82 Aligned_cols=210 Identities=17% Similarity=0.266 Sum_probs=166.7
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI 828 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i 828 (1101)
..++++++..++|+|||++ .+++...+++ |.+.|+++.+.-.+.|||+++ .|.|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gGdi 145 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGGDI 145 (673)
T ss_pred ceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCCcE
Confidence 3678899999999999873 2333444555 899999999999999999999 6889
Q ss_pred EEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcCCC-CEEE
Q 001318 829 SLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NVLV 905 (1101)
Q Consensus 829 ~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg-~~l~ 905 (1101)
.|..+.++....+|....+ .|+-+.|+|....+|.+++.+|.|.+||+.....+..+ ..|..+...|+|+|.. .+||
T Consensus 146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 9999999888888875534 46689999966678888999999999999877666554 6799999999999965 6788
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCC
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP 984 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~ 984 (1101)
+.|.|+.|.+||+..... ..++ ... .+...++|+++|.+|+++ ..|.|..||+...+..-.. ...|...
T Consensus 226 sVG~Dkki~~yD~~s~~s--~~~l--~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v-~sah~~s 295 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQAS--TDRL--TYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAV-RSAHDAS 295 (673)
T ss_pred EecccceEEEeecccccc--ccee--eec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceE-eeecccc
Confidence 999999999999986332 1122 112 267899999999999995 8899999999876543222 2378889
Q ss_pred eeEEEEcCCC
Q 001318 985 ITHATFSCDS 994 (1101)
Q Consensus 985 i~~l~~spdg 994 (1101)
|++++|-|..
T Consensus 296 Vt~vafq~s~ 305 (673)
T KOG4378|consen 296 VTRVAFQPSP 305 (673)
T ss_pred eeEEEeeecc
Confidence 9999997654
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.8e-16 Score=184.97 Aligned_cols=368 Identities=22% Similarity=0.390 Sum_probs=268.7
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEecCccc-CeEEEeeeecCCcc-EEEEEec-CCcEE
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK 523 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~v~~~~~~~~~-~l~s~~~-dg~i~ 523 (1101)
+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 567899999999999999 78888899999999998887 6777776443 67777764 55555 5555444 99999
Q ss_pred EEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEcC
Q 001318 524 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 524 ~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 601 (1101)
+|+... ......+..|...+..+.|++++ ..+++++. |+.+++|+...+..+..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG---------------------KLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC---------------------CEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 999987 55566666666666666655555 45777775 99999999999888888876
Q ss_pred CCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCcccccc-ccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 602 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
+ ...+.+++|+|++. .+++++.|+.+++||...+ .... .+.+
T Consensus 197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~--------------------------------- 240 (466)
T COG2319 197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG--------------------------------- 240 (466)
T ss_pred C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC---------------------------------
Confidence 4 44799999999998 5555589999999965533 1111 0000
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
|.... ...|++++.++++++ |+.+++|+......
T Consensus 241 --------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 241 --------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred --------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 12221 114555555555555 67777777765443
Q ss_pred -eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec--CcccCeeEEEEcCCCCEEEEE-eCCCceE
Q 001318 839 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC 914 (1101)
Q Consensus 839 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~-s~D~~v~ 914 (1101)
...+.+|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.
T Consensus 276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 344456788899999999 77788889999999999998877666665 788889999994333566655 6889999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 915 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 915 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
+|++.... ........ ..+..+.+++ ...... ..++.+.+|+............. ...+....+++
T Consensus 355 ~~~~~~~~----~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 422 (466)
T COG2319 355 LWDLRTGK----PLKTLEGH-----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSP 422 (466)
T ss_pred eeecCCCc----eeEEecCC-----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECC
Confidence 99998854 11111111 1267888888 544443 47889999999998887766521 17899999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 001318 993 DSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++..+++++.++.+++|+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 423 DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEecCCCcEEEEeccC
Confidence 999999999999999999988
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=7.6e-19 Score=180.60 Aligned_cols=292 Identities=12% Similarity=0.181 Sum_probs=212.0
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
+..++....+++||+............. ....+.++.|+..... ++..+.|..+++|.-..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------------- 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------------- 66 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence 3444555789999998776655544332 2334888899887753 33345578899886421
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcE
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 861 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 861 (1101)
.++.+...... ....-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...|
T Consensus 67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 11111111111 122445566656668999988 89999999998777888999999999999998 7789
Q ss_pred EEEEeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 862 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 862 lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
||+++..|.|.|..+.++.....|.... ..|.-+.|++..+. |.+++.+|.|.+||+..... .+.....|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 9999999999999999987777775443 34568999998654 56889999999999987432 233333444
Q ss_pred CCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce-e
Q 001318 940 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1016 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~-~ 1016 (1101)
.+...++|+|....|++ +.|+.|.+||.........+.. ..+.+.++|+++|.+|++|+..|.|..||++..+ .
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 36788999998876665 7999999999987766665543 6689999999999999999999999999997654 4
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
+..+. -|... |. +++|-|
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQP 303 (673)
T ss_pred ceEee-------ecccc-ee--EEEeee
Confidence 44333 22233 55 778877
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=181.63 Aligned_cols=169 Identities=20% Similarity=0.267 Sum_probs=132.6
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
..+|.||.+.|+|++|+.||. +|++|++|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 346889999999999999999 8999999999999999988888776 5899999999999998889999999999999
Q ss_pred EEecCCCC----------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001318 524 AWLYDNLG----------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593 (1101)
Q Consensus 524 ~wd~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1101)
++|+...+ ....+..|...|..++..|++. +.+.++++||+|+-+|++..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCC
Confidence 99998522 2223344445555555555554 67999999999999999863
Q ss_pred cee-EE-------EcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEec
Q 001318 594 QLL-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 594 ~~~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 635 (1101)
..- .. ...........|+.++| +..+|++|+.|-..++||.+
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 210 00 01112223467899999 67799999999999999964
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=7.6e-19 Score=175.09 Aligned_cols=174 Identities=24% Similarity=0.387 Sum_probs=144.8
Q ss_pred CcceeecccCCCCcEEEEEec--CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
.+.+...-+|+..=..++||| .|+ |++|..-+.|++|...+|.-... ..-+.+|+..|-.
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED 262 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED 262 (440)
T ss_pred cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence 344444556999999999999 454 88998889999999988754321 1136789999999
Q ss_pred EEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---Cce
Q 001318 413 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAK 488 (1101)
Q Consensus 413 l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~ 488 (1101)
|+||| ....||+||.||+|+|||+..+.....+. .+.|.+.|+.|.|+..-. +|++|++||+++|||++. +++
T Consensus 263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred hccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence 99999 56689999999999999999884333332 478999999999998888 899999999999999974 678
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
+..|+-|..+|+++.|++..+ ..|++++.|..|.+||+...
T Consensus 340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeecc
Confidence 899999999999999998766 57888888999999999753
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.4e-17 Score=162.62 Aligned_cols=227 Identities=13% Similarity=0.132 Sum_probs=169.7
Q ss_pred CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC---CeeEEEEecCCCEEEEEe
Q 001318 748 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE---AVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 748 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~---~i~~~~~s~dg~~la~~s 824 (1101)
|+..++++.+.+.-|.+||.-+++. ... .....|.. ...+++|+|||..|.+|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~l----------------------raS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKL----------------------RAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeecccccc----------------------ccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 6677788888899999888643322 111 11111222 346799999999999999
Q ss_pred CCeEEEEEC-CCCceeeE---e----cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEE
Q 001318 825 GGKISLFNM-MTFKTMAT---F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 825 dg~i~vwd~-~~~~~~~~---~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
...|++||+ +.|..... + .+..+-|.+++|+|.+.+.+|.|+....+-||.-..++++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 999999999 44432211 1 123566889999998888999999999999999888999999999999999999
Q ss_pred EcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC-ceee
Q 001318 897 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 973 (1101)
Q Consensus 897 ~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~-~~~~ 973 (1101)
|.+||+.|.+|+. |-.|..||++..... +-.+..|....+.-......|+|++|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccch----hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999885 678999999874432 22222332211122234557899999996 999999999998 6655
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
..+. .|+..+..+++.|-=.++++++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678899999999998888887754
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=6.4e-17 Score=168.18 Aligned_cols=505 Identities=14% Similarity=0.151 Sum_probs=289.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe--cC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pd 418 (1101)
...|...|.|+.|+.... ++.+ +.|..+.+|.-.+........+. ....+ ...| +....-- ..
T Consensus 10 k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p-----~df~p-----t~~h---~~~rs~~~g~~ 74 (737)
T KOG1524|consen 10 KNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP-----DDFVP-----TDMH---LGGRSSGGGKG 74 (737)
T ss_pred ccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC-----cccCC-----cccc---ccccccCCCCC
Confidence 336778888999999887 3444 45555555554333221110000 00000 0011 0000000 12
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
...|+.++.||.+.|-+-... +. .....|.+.|.+-.|+|||. -|+|.+.||.|++|. ++|....++.....+
T Consensus 75 ~d~~~i~s~DGkf~il~k~~r--VE--~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSAR--VE--RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred cceEEEEcCCceEEEecccch--hh--hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence 456888899999998875542 22 24678999999999999999 699999999999999 888877777777889
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.|++|.++.+ ..+++.+ +.+.+=-+.....+..+..|.+-|.++. |++..+.+++
T Consensus 148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~---------------------W~~~s~lI~s 203 (737)
T KOG1524|consen 148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLS---------------------WSTQSNIIAS 203 (737)
T ss_pred eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEee---------------------cCccccceee
Confidence 99999977654 4555544 5555555555566666666666555544 5555568999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
||+|-..++||. .|+.+..-..|.+ +|++++|.|+ +.++.++. +++|+=
T Consensus 204 gGED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~-------------------------- 252 (737)
T KOG1524|consen 204 GGEDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS-------------------------- 252 (737)
T ss_pred cCCceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec--------------------------
Confidence 999999999997 4566665555555 7999999999 66666654 233310
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
....
T Consensus 253 ----------------------------------------------------------------------------~p~~ 256 (737)
T KOG1524|consen 253 ----------------------------------------------------------------------------SPRV 256 (737)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0134
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
+.|..++||+||..++.++..|.+.+=-.- ..++. -+.
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i----------------------eq~l~--------------------~~n 294 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIVAYAI----------------------EQQLV--------------------SGN 294 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEEeeee----------------------hhhhh--------------------hcc
Confidence 678899999999999999998877642110 00000 001
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
+=++.. ...|.+-|+.++.+ ..+. ....+...+..- + +|+++. ...|++|.-......-.+.+....+.-+.-
T Consensus 295 ~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq 368 (737)
T KOG1524|consen 295 LKATSKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQ 368 (737)
T ss_pred ceeEeeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhh
Confidence 111222 34577777766544 2222 344555555543 3 333332 346888876655544445544443322221
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--E-eCCeEEEEEc-CCceee
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECV 973 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~-~d~~v~vwd~-~~~~~~ 973 (1101)
+.+ .+++ ....++.++..+...... ..+.|... .....-..|-....|+. . ....+.+||. .+|+..
T Consensus 369 ~ek-~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~q 439 (737)
T KOG1524|consen 369 GEK-YFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQ 439 (737)
T ss_pred hhh-heEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCccc
Confidence 111 1222 223345555554421110 00111110 11111122222334454 2 3446788888 677654
Q ss_pred eeccCCCCCCCeeEEEEc----CCCCEEEEEEcCCeEEEEEcCCce-eeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 974 KQWVPRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLK-LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~s----pdg~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
..-..-.|...|..++.. ++.+.++.-..++.++|=.+.+.- ....++ + | ..|. .++|+. -.
T Consensus 440 gDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~K----i--G---TmVh--tLawnd--tt 506 (737)
T KOG1524|consen 440 GDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYK----I--G---TMVH--TLAWND--TT 506 (737)
T ss_pred CCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhh----h--h---hhhh--hhhhcc--cc
Confidence 332212356677777764 355677777777777776554321 111111 1 1 1133 688874 44
Q ss_pred EEEEEecCCcEEEEeccCCC
Q 001318 1049 EFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
-+++|-.|+++.||-.++.-
T Consensus 507 NiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 507 NILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred ceeeeeccceEEEEEcCCcc
Confidence 58888999999999987643
No 169
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=3.2e-18 Score=162.50 Aligned_cols=308 Identities=14% Similarity=0.204 Sum_probs=196.7
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCcee
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.+...+++|.+.|++++|.. + .+|++|..-|.|++|++.+......+. .+...++.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa--~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQA--N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhcc--c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 34567789999999999843 3 469999999999999999988877777 4555677776666554
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC-cEEEEEecCcccccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 644 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~ 644 (1101)
+.+-+.|+.+.+|++..+..+..-. ..++++.|.+-. +...+... .+-.++-+...+ .+..
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 8888999999999998765543322 134445554321 11111110 111111111000 0000
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
.+ +....+++-+-.
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADDS----- 145 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCch-----
Confidence 00 000011111000
Q ss_pred ccccccccCccccccceEEEEEcC-CCc--eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
..+..+.+.+..+.. ++. .++++.++|.+.+||++.++.. .+......+....
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~-- 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN-- 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence 011223333333221 222 3566777899999998664211 1111111111111
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC--Cce--eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
..|..+|.++.+.+.-..=++|+ +..+..|++.. +.+ ..+..-....|..+.+-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23889999999987665556666 67788888763 222 222333356788999999 9999999999999999999
Q ss_pred ecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 877 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 877 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
++...++.++.|++.|++++|+||...+|.++.|++|.+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.9e-19 Score=200.54 Aligned_cols=258 Identities=13% Similarity=0.156 Sum_probs=200.0
Q ss_pred cccCCCCcEEEEEecCCCe---EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 341 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~---llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
.+.-...-..++|.+.|.. |||.|..||.|.+||...- +.. ...-.......|++.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~-----------~~~~~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IAN-----------ASEEVLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccC-----------cchHHHhhhcccCCceeeeeccc
Confidence 3344567789999998876 6999999999999998752 110 00001124678999999999999
Q ss_pred CCC-eEEEEEcCCeEEEEEccCCceeeeeeee--ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC
Q 001318 418 DGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 494 (1101)
Q Consensus 418 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 494 (1101)
.+. +||+|+.||.|.|||+..-+..- .+ ..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence 555 99999999999999998743221 22 124568999999987776 799999999999999999988877766
Q ss_pred ccc--CeEEEeeeecCCccEEEEEecCC--cEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 495 HEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 495 h~~--~v~~v~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
|.+ .+..+.|+++...+++++...|+ .|.+||++... ....+..|...|.++.|.+.+.
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~---------------- 266 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP---------------- 266 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence 554 46778999887755444444443 69999998654 4455677887777777777664
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++++++.|+.|.+|+.++++.+..+... ...+..+.|.|. ...+++++-||.|.|+.+.+.
T Consensus 267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ----hhhhcccCCCCeeEecCCCceEeeecCCC--CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 57999999999999999999999999864 347899999994 558899999999999998765
No 171
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.9e-17 Score=173.98 Aligned_cols=572 Identities=14% Similarity=0.151 Sum_probs=318.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-----
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 418 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 418 (1101)
|...-.++.|+|.| |+|.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 34456788999999 6888875 578899988877766 37778999999999872
Q ss_pred -C------CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC---CCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 419 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 419 -g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
+ -+||++...|.|.+||...+..+. .+..|.++|..++|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999876544 5778999999999965 3434 566666678999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-------eEEec---
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 558 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--- 558 (1101)
............|+.+.|-...++.+.++ .|.+.+-+.-..... ......+.+..+-. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 88776655666667766554444445444 466655544321110 00011111111100 00000
Q ss_pred -cccCc------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC--CEEEEEeCCCcE
Q 001318 559 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 629 (1101)
Q Consensus 559 -~~~~~------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i 629 (1101)
..... ..-++|+|.-+.++-......+.++|++-..++.......+. +.-+.+-|++ ..|++...||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeE
Confidence 00000 112456776666666667788999999999998888766553 4447777755 579999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
.+|-.+......+.-..+-. .+-
T Consensus 299 tirvrk~~~~~f~~~~~~l~---------------------------------------------------------~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNASLS---------------------------------------------------------MDL 321 (1062)
T ss_pred EEEEeeccCccccccchhhc---------------------------------------------------------ccc
Confidence 99965432111111000000 000
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
...+.+.... .+..+......|. ...++..-++|...+|.+..+....++......-..-+|
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0000000000 1111112222222 222333444555566665433222221110000000000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
....... -....-+..|.||.. +.|. +++--+......... ..+. +....-| ++|.|.
T Consensus 385 f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~t~~~~~--p~~n-~~~~~~p----LvAvGT 444 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPELTKVEND--PGGN-TPAGTVP----LVAVGT 444 (1062)
T ss_pred ccCceee---------hhhccccchhhcCCC----CCCceeeecccCcccceeecC--CCCC-ccceeee----eEEeec
Confidence 0000000 000000111112100 0011 000001111111111 1111 1111222 899999
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe----------CCCceEEEeCCCcccccceeeecCCCCC
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
+.|+|.++|+.++...+.+..|++.|.++.|-.... |++.+ .-+.+.|-|+.+|.....+-++..+
T Consensus 445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d--- 520 (1062)
T KOG1912|consen 445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD--- 520 (1062)
T ss_pred CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCCCC---
Confidence 999999999999999999999999999999976543 44333 2345788899998754444333332
Q ss_pred CCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCC-eeEEEEc-CCCC----------------EE
Q 001318 937 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS-CDSQ----------------LV 997 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~-i~~l~~s-pdg~----------------~l 997 (1101)
..+|+.+..|..|+||++. .+.-+.+||+++..+++.... .-+ |+.+.|+ |.-. ..
T Consensus 521 --espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWsl~~~~si~qk~ls~q~sms~n~v 595 (1062)
T KOG1912|consen 521 --ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLV 595 (1062)
T ss_pred --cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeecccCCCCcccccchhhhhhhhcee
Confidence 3689999999999999995 888999999998877665432 334 8889998 3221 22
Q ss_pred EEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC------CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 998 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVS------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 998 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
++.+ +..+++.+.....+ ..++.+ .-......++|- +..++.|..+|++.+||+..
T Consensus 596 v~ds--~es~~~~~~~~a~~--------~sdgsq~~~a~esfafal~~mAwk---~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 596 VLDS--VESRIYHITLSALV--------VSDGSQVNTAWESFAFALCAMAWK---DDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred eecc--ccchheehhhhhhh--------hccccchhhHHHHHHHHHHhhhcc---CCeeEeecccCceeEEeccc
Confidence 2222 22333332211111 011100 000112246663 57999999999999999743
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2e-17 Score=161.82 Aligned_cols=403 Identities=15% Similarity=0.171 Sum_probs=236.3
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 428 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 428 (1101)
-++|||+|+| +|+.+.- .+.|=|.++-+.... +. --+.|..+.|+.|..+++.+ +.|
T Consensus 13 ~c~fSp~g~y-iAs~~~y-rlviRd~~tlq~~ql-------------------f~-cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSRY-RLVIRDSETLQLHQL-------------------FL-CLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeeee-EEEEeccchhhHHHH-------------------HH-HHHHhhheeeeccceeeeeeeecc
Confidence 4689999997 7777654 888888887665431 11 13578889999999887765 778
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 508 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 508 (1101)
+.|.+|++...+-.. .+.....++.+++|||||++ +|.+...|-.|.||.+.+.+....-. -...+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecc-cccCceeEEEC--C
Confidence 999999998876554 35556789999999999987 78888999999999998877654322 22335667774 5
Q ss_pred CccEEEEEecCCcEEEEecC---CCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcE
Q 001318 509 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 585 (1101)
Q Consensus 509 ~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 585 (1101)
+|++.+.++.-...-...+. .-.....+.......+.+.|+||| +.+++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~laV------- 195 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLAV------- 195 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEEE-------
Confidence 66777776653211111111 111222333334444455555554 45544
Q ss_pred EEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC---CCCCCcc
Q 001318 586 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS---ENSKPTI 662 (1101)
Q Consensus 586 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 662 (1101)
||---.-.+..+. . .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+.. -....... .... .+
T Consensus 196 --wd~~Leykv~aYe--~-~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~eflh-l~s~~dp~~~~~~ke-~~ 267 (447)
T KOG4497|consen 196 --WDNVLEYKVYAYE--R-GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFLH-LCSYHDPTLHLLEKE-TF 267 (447)
T ss_pred --ecchhhheeeeee--e-ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhcc-chhccCchhhhhhhh-hc
Confidence 4432221122221 1 124778999999999999999999998765433 22221110 00000000 0000 00
Q ss_pred cccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc-cccccce
Q 001318 663 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKI 741 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~i 741 (1101)
+... -.. .+-.+..++ ..|...+
T Consensus 268 ~~~q-------------------------------------------------l~~-------~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 268 SIVQ-------------------------------------------------LLH-------HCLSFTPTDLEAHIWEE 291 (447)
T ss_pred chhh-------------------------------------------------hcc-------cccccCCCccccCcccc
Confidence 0000 000 000000000 0000000
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
.. .+|+.... . ..+....+.+. . .+..-.+.-++|++|..+++
T Consensus 292 se-------------------~~YE~~~~-------p---v~~~~lkp~tD------~--pnPk~g~g~lafs~Ds~y~a 334 (447)
T KOG4497|consen 292 SE-------------------TIYEQQMT-------P---VKVHKLKPPTD------F--PNPKCGAGKLAFSCDSTYAA 334 (447)
T ss_pred ch-------------------hhhhhhhc-------c---eeeecccCCCC------C--CCcccccceeeecCCceEEe
Confidence 00 00000000 0 00000000000 0 11344567799999999999
Q ss_pred EEeC---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 822 SASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 822 ~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
+-.| +.+.+||++..+....+. ...+|.+..|+| +...|+.+.....+++|......++..- +..-.|..++|.
T Consensus 335 Trnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~ 411 (447)
T KOG4497|consen 335 TRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWL 411 (447)
T ss_pred eecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEec
Confidence 9875 569999998766554443 466899999999 7777777777778999997765555443 233679999999
Q ss_pred CCCCEEEEEeCCCce
Q 001318 899 HALNVLVSSGADSQL 913 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v 913 (1101)
.+|..++-.+.|...
T Consensus 412 ~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 412 QPGEFIVLCGKDAFC 426 (447)
T ss_pred CCCcEEEEEcCCceE
Confidence 999999999998743
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2.2e-17 Score=161.41 Aligned_cols=273 Identities=15% Similarity=0.256 Sum_probs=187.2
Q ss_pred eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-------ce-----EEEec-CcccCeEEEeeee-----cCCccEEEEE
Q 001318 455 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPHH-----KENIQFIFST 516 (1101)
Q Consensus 455 V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~-----~~~~~-~h~~~v~~v~~~~-----~~~~~~l~s~ 516 (1101)
...+.|+|||. .|++-+.|..+.+|++... .. ..+++ .....|...||-+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45588999999 8999999999999997521 11 11111 1234566667642 3556789999
Q ss_pred ecCCcEEEEecCCCCceeeecCCC--C---ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-
Q 001318 517 ALDGKIKAWLYDNLGSRVDYEAPG--R---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 590 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~~~~~~~~~--~---~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~- 590 (1101)
+.+.-|++||.-+++....+..-. . ...+++ |+|||..|++| ..+.|+++|+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~---------------------Fs~DGeqlfaG-ykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ---------------------FSPDGEQLFAG-YKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEE---------------------ecCCCCeEeec-ccceEEEeecc
Confidence 999999999999988776554322 1 233444 45555556554 5679999999
Q ss_pred CCCceeEEEc--C---CCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccc
Q 001318 591 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 664 (1101)
Q Consensus 591 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1101)
+.|.....+. . .+...-+.+++|+| +.+.+++|+....+-||.-... .++..+
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll-------------------- 246 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL-------------------- 246 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence 5554322221 1 12234567889999 5668888888777766653332 111100
Q ss_pred cchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEE
Q 001318 665 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l 744 (1101)
T Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T KOG2919|consen 247 -------------------------------------------------------------------------------- 246 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 745 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 745 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
.+|.+.|+.++|.+||+.|.+|+
T Consensus 247 ---------------------------------------------------------ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 247 ---------------------------------------------------------GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ---------------------------------------------------------cccCCCeeeEEeccCcCeecccc
Confidence 12667777777777777777776
Q ss_pred --CCeEEEEECCC-CceeeEecCCCC-CeEEE--EEecCCCcEEEEEeccCeEEEEEeec-ceEeeeecCcccCeeEEEE
Q 001318 825 --GGKISLFNMMT-FKTMATFMPPPP-AATFL--AFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 825 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~l--~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~ 897 (1101)
+..|..||++. ...+..+..|.. .-..| ...| ++++||+|+.||.|++||+++ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67788888864 445556666644 22333 4457 799999999999999999998 7778888889999999999
Q ss_pred cCCCCEEEEEeCC
Q 001318 898 SHALNVLVSSGAD 910 (1101)
Q Consensus 898 s~dg~~l~s~s~D 910 (1101)
+|--.+++|++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888888754
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=7.5e-17 Score=162.94 Aligned_cols=302 Identities=16% Similarity=0.180 Sum_probs=213.2
Q ss_pred ccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 738 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
..++.++.|.+++. .+++++.|..|++|.+....-....... .....+. .|...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CCcceeEEEEEcCC
Confidence 46788999988877 8999999999999998654321110000 0111122 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEECC--------C--------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 817 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
|..+|+|+ +|.|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999865 2 234456788999999999999 9999999999999999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee---eecCCCCC------------CCCCCCeE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR 944 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~v~~ 944 (1101)
.....+.+|..-|..++|.|-++++++-+.|...+++.+.........- +....+.. ....-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777665432211110 00000000 00123356
Q ss_pred EEEcCCCcEEEE-E----eCCe-----EEEEEcCCceeeeeccCCCCCCCeeEEEEcC------------------CCCE
Q 001318 945 VQFHQDQIHFLV-V----HETQ-----LAIFETTKLECVKQWVPRESSAPITHATFSC------------------DSQL 996 (1101)
Q Consensus 945 ~~~s~dg~~la~-~----~d~~-----v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp------------------dg~~ 996 (1101)
++|+|||.+|++ + ..+. .++|+-...+.... .......+...+.|+| -+-.
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-ecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 899999999987 2 2232 34554432221111 1112244555555554 1223
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 997 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+|.++ -..|+|||.++.+.++.+...+|.+ +. .++|++ ||..++..|.||-..+--++..|
T Consensus 315 faiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 44454 5689999999999988776444443 44 899998 78999999999988888877666
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.4e-17 Score=164.37 Aligned_cols=218 Identities=14% Similarity=0.235 Sum_probs=165.8
Q ss_pred ccccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC
Q 001318 401 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 475 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d 475 (1101)
-...||+++|..++|+| +...||+||.|.+|.||++..+.. ......|.||...|.-++|.|.... +|++++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 888999999999999999876543 2345678999999999999999887 89999999
Q ss_pred CcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCC-ceeEEEEccCCce
Q 001318 476 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR 554 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~ 554 (1101)
.+|.+||+.+|+.+-++. |.+.|++++| +.||.+|++.+.|+.||+||.++++.+..-..|.+ .-....|-.+
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~--- 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS--- 227 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc---
Confidence 999999999999999988 9999999998 46678999999999999999999887776555543 2223333333
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCcE
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGI 629 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i 629 (1101)
+. +++.+ .+..+-+||...-+.-..+..-.....|.---|.+|.+.++ +|-.|+.|
T Consensus 228 ------------------g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 228 ------------------GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ------------------Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 34 44433 57889999977654322222222222354445677877666 45569999
Q ss_pred EEEEecCcccccccc
Q 001318 630 KILATSDGIRLLRTF 644 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~ 644 (1101)
|.|.+.+....+..+
T Consensus 289 RYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 289 RYFEITNEPPFVHYL 303 (472)
T ss_pred EEEEecCCCceeEEe
Confidence 999998874444433
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=9.4e-17 Score=157.17 Aligned_cols=344 Identities=13% Similarity=0.178 Sum_probs=237.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEEecCcccccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
..+|+|+|+++++.+.- .+.|-|..+.+..+.+..- ..|.-+.|..|..+++++ ..++.|.+|++... +....+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence 46788999999998865 7888888887765555432 236678999988777665 56789999998755 211111
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 724 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 724 (1101)
T Consensus 88 -------------------------------------------------------------------------------- 87 (447)
T KOG4497|consen 88 -------------------------------------------------------------------------------- 87 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCC
Q 001318 725 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 803 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~ 803 (1101)
......+.+++|||||+.++..++ +-.|.+|.+.+ ..+..+..
T Consensus 88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t--------------------~~~~~~~~------ 131 (447)
T KOG4497|consen 88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT--------------------QKGYLLPH------ 131 (447)
T ss_pred ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEecc--------------------ceeEEecc------
Confidence 114467889999999977666555 78888888733 22222221
Q ss_pred CCCCeeEEEEecCCCEEEEEe--C--CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec--cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s--d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~ 877 (1101)
....+..++|+|||++.+..+ | .-+.+..-+....++.+....-..+.+.|+| ||..||+-.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 234468899999999999987 4 2255555556667777776677788999999 8877775332 11222221
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc--------------------------------
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 925 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-------------------------------- 925 (1101)
-.-.+..++|+|.+++|+.|+.|+.+||-+--+.+...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12357889999999999999999998876633321100
Q ss_pred --------------------------ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC---CeEEEEEcCCceeeeec
Q 001318 926 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 926 --------------------------~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d---~~v~vwd~~~~~~~~~~ 976 (1101)
...++-......+.-++..++||+|..++++-.| +.+.+||+.+.+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0001111222233456788999999999999555 57999999988876655
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. ...+|....|.|....|+.+.....+++|.......++.-. .| .....+.|.- +|..++..+.|
T Consensus 359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~------~G-----F~i~~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KG-----FNIQKLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC------CC-----ceeeeEEecC-CCcEEEEEcCC
Confidence 4 26689999999999888888878889999987765554321 11 3444899987 67889988888
Q ss_pred Cc
Q 001318 1057 GG 1058 (1101)
Q Consensus 1057 g~ 1058 (1101)
.-
T Consensus 424 af 425 (447)
T KOG4497|consen 424 AF 425 (447)
T ss_pred ce
Confidence 64
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=5.5e-17 Score=162.85 Aligned_cols=243 Identities=14% Similarity=0.202 Sum_probs=176.2
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
+...-..-+|+++|..++|+|-....+|+||.|.+|.||++..+....... -....|.||...|.-++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQ 138 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEe
Confidence 334444668999999999999888899999999999999998765543211 12235899999999999
Q ss_pred Eec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 415 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 415 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|+| -.+.|++++.|.+|.+||+.+|+.+. ++. |.+.|+++.|+.||. +++|.+.|+.|+|||.++|+.+..-.
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~ 212 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV 212 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence 999 56789999999999999999998665 455 999999999999999 79999999999999999999999888
Q ss_pred CcccCeEE-EeeeecCCccEEEEEe---cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 494 GHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 494 ~h~~~v~~-v~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
+|.+.-.. +.| -.+|.++.+|- .+..+-+||..+.+....+..- .+...+..--+
T Consensus 213 ~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFy 271 (472)
T KOG0303|consen 213 AHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFY 271 (472)
T ss_pred cccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeee
Confidence 88765332 233 35556444442 3678999988765443221110 01112333345
Q ss_pred cCCCCEEEEEe-CCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccC
Q 001318 570 DTTKNRFLAAG-DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD 616 (1101)
Q Consensus 570 ~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 616 (1101)
+++.+.++.+| .|+.||-|.+....+ ++-+.......+-..+.|-|.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 66667666655 799999999977653 333332222334455677664
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=9.9e-16 Score=169.53 Aligned_cols=279 Identities=10% Similarity=0.115 Sum_probs=178.3
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.++...++.|.+|++...........+. .......++++|+++.|++++. ++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 4455678999999996422222222221 2345678899999998877654 68888888731
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCC-Cc---eeeEecCCCCCeEEEEEec
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP 856 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~sp 856 (1101)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +. .+..+. +......++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223467899999999999887 68999999964 22 222232 223467788999
Q ss_pred CCCcEEE-EEeccCeEEEEEeecceEee-------eecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCC--ccccc
Q 001318 857 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK 925 (1101)
Q Consensus 857 ~d~~~la-sg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~--~~~~~ 925 (1101)
++++++ +...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++. ++...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 777665 45567999999997633221 1111 233568999999999988876 89999999974 22211
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce----eeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~----~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
...+...............+.|+|+|++++++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11121111111111123468999999999985 46799999986432 2222221 134568899999999998
Q ss_pred EEc-CCeEEEEEcC--Ccee
Q 001318 1000 CFL-DATVCVFSAA--NLKL 1016 (1101)
Q Consensus 1000 ~s~-dg~v~vwd~~--~~~~ 1016 (1101)
+.. +++|.+|+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 775 8899999874 4543
No 179
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-15 Score=165.73 Aligned_cols=605 Identities=11% Similarity=0.091 Sum_probs=341.0
Q ss_pred CCCCCCcceeeccc-CCCCcEEEEEecC-----------CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcc
Q 001318 330 TPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP 397 (1101)
Q Consensus 330 ~~~~~~~~~~~~~~-h~~~v~~~~~spd-----------g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 397 (1101)
.+|...-+.+..+. |...|+.+.|.|- .+.+||++...|.|.+||+..+..+.
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------- 103 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------- 103 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---------------
Confidence 44445555556666 8899999999872 34578999999999999999887655
Q ss_pred cccccccCCCCCeEEEEEec---CC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 398 LQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 398 ~~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
-+..|..+|..++|-+ +. ..|++-....+|.+|+..+|+.+-+ ...-.....|+.+.|-+...+.+.|+
T Consensus 104 ----~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 104 ----WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred ----hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEcc
Confidence 2778899999999987 44 5677778889999999999986652 33344567778998866553444444
Q ss_pred CCCcEEEEeCC-C------CceEEEecCccc----------------C-------eEEEeeeecCCccEEEEEecCCcEE
Q 001318 474 DDKTIKVWDAT-N------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 474 ~d~~i~iwd~~-~------~~~~~~~~~h~~----------------~-------v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
.|.+.+-+.- . |+..+.-..|.. . .++..|.+.+.-+-++.......+.
T Consensus 177 -~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 177 -KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred -CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 4555555432 1 233332222222 0 0111222222222333444567788
Q ss_pred EEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-----------
Q 001318 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------- 592 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------- 592 (1101)
++|++-..+......+.+.+.-+.+-|++++ ..+++.-.||.+.+|-.+.
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~ 316 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNAS 316 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchh
Confidence 8998877776666666666666666666653 4588888999999997654
Q ss_pred -----CceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCcccccccccccccccccc---------CCC
Q 001318 593 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SEN 657 (1101)
Q Consensus 593 -----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---------~~~ 657 (1101)
+..+..+...+...+ ......|. ...++.--.+|.+.+|.+.++........+........ ...
T Consensus 317 l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 317 LSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred hccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 222222222222222 22333443 55555666788899999887622111111000000000 000
Q ss_pred CCCcccccchhhhhhhcccccccccccccccC---CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIP---GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
....++.++.-.+ ...+.+..+..... ...+......--..++.|...|+|.++|+.+.......
T Consensus 396 ~l~~LS~dg~h~s-----Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f------- 463 (1062)
T KOG1912|consen 396 SLISLSDDGSHSS-----GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF------- 463 (1062)
T ss_pred cccchhhcCCCCC-----CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-------
Confidence 0001111110000 00111111111111 11111111112345678899999999999875543333
Q ss_pred cccccceEEEEEcCCCceEEeeecC--ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 735 NLRATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
..|...|.++.|....+.+-.+.+. ..-. .....+.+-++.+|.-....-.....+.+|+.+.
T Consensus 464 svht~~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ir 528 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIR 528 (1062)
T ss_pred cccccceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEcccccccccccCCCCCcCcceeee
Confidence 2388999999998887744433331 1000 0111234456667765443322334788999999
Q ss_pred EecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEe-cCCC----------------cEEEEEeccCeEEEE
Q 001318 813 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIY 874 (1101)
Q Consensus 813 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~vw 874 (1101)
.|.-++|++..- +.-+.+||+++..+++...-.-.-|+.+.|+ | .- +..+..+ +..+++
T Consensus 529 vS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~ 605 (1062)
T KOG1912|consen 529 VSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIY 605 (1062)
T ss_pred ecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchhe
Confidence 999999999998 8889999999887776655444458889998 3 11 1333333 233344
Q ss_pred Eeec-------ceE-eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 875 NVRV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 875 d~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
.+.- +.. ....+...-.+.+++| .+..|+.|..+|.+++||+........+ ... .+. .......
T Consensus 606 ~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~--d~p-~~r---a~~l~~~ 677 (1062)
T KOG1912|consen 606 HITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVR--DSP-DPR---AHSLTFP 677 (1062)
T ss_pred ehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCcc--CCC-Cch---hhheecc
Confidence 3321 111 0111111223444677 4679999999999999998663221100 000 110 1223334
Q ss_pred EcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 947 FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 947 ~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
+-|....+++-...-+-+||.+....+..+.....+..+..+.+......++ ..|.++|+-........
T Consensus 678 ~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~ 746 (1062)
T KOG1912|consen 678 QIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPP 746 (1062)
T ss_pred cCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCCc
Confidence 4454445555566678899999888877764222244555556654444444 34557777766555443
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.8e-17 Score=160.17 Aligned_cols=307 Identities=9% Similarity=0.045 Sum_probs=211.0
Q ss_pred cccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccC------CceeeeeeeeccccCCeeEEEEcCCCCeEEEEE
Q 001318 398 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 471 (1101)
Q Consensus 398 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 471 (1101)
+..+-+.+|.+.|.++.||.++++||+|+.|..+++|+++. .+.+... -..|...|.|++|...++ .+.+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~--~~~H~SNIF~L~F~~~N~--~~~S 122 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM--EHPHRSNIFSLEFDLENR--FLYS 122 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec--cCccccceEEEEEccCCe--eEec
Confidence 33445789999999999999999999999999999999863 2333211 124668999999998887 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecC--cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce---eeecCCCCceeEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTM 546 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~ 546 (1101)
|+.+++|...|+++.+.+..+.. ..+.|+.+..+|.. +.|++.+.+|.|.+||.+..... ..........+
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~-- 198 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY-- 198 (609)
T ss_pred CCCcceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce--
Confidence 99999999999999999888752 33589999887763 68999999999999999875421 11122222333
Q ss_pred EEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-eEEEcCC----CCCCCcCeEEEccCCCEE
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLL 620 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l 620 (1101)
.+-|+|-. .+|++.+..+-+-+||.+..+. +...... .....-.++.|+|+|+.+
T Consensus 199 -------------------t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 199 -------------------TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred -------------------eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee
Confidence 44444443 4567788889999999875431 2111111 111123678999999999
Q ss_pred EEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccC
Q 001318 621 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD 700 (1101)
Q Consensus 621 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1101)
.+--....-.+||+.+....+..+. |..... +.. -......+.+
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY---------~N~--------------------------~T~KS~~F~~ 303 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSD-HNPNGY---------CNI--------------------------KTIKSMTFID 303 (609)
T ss_pred hhhhccCCCEEeeeecccceeEecc-CCCCcc---------eee--------------------------eeeeeeeeec
Confidence 8877766677788876523332222 111100 000 0111223445
Q ss_pred ccceeeccCCCcceeeeccccCCCcccccccc----------------CccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
...+++|+.+-.|.+|.+.......-+..+.- ...+|..-+..+.|+|...+|++.+-.+.++|
T Consensus 304 D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 304 DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 56689999999999999976544332211111 11678899999999999999999999999999
Q ss_pred eec
Q 001318 765 WKW 767 (1101)
Q Consensus 765 w~~ 767 (1101)
|.-
T Consensus 384 WS~ 386 (609)
T KOG4227|consen 384 WSD 386 (609)
T ss_pred ccc
Confidence 964
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-15 Score=143.62 Aligned_cols=288 Identities=11% Similarity=0.121 Sum_probs=195.6
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+-+++|.+++++++..+|.|.++.+..-..... ...|+...... ..|+.+++.++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hh
Confidence 3455667899999999999999999998854321110 11222222222 3499999999998 55
Q ss_pred EEEEEeCCeEEEEECCCCce------eeEe--cC-----CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee
Q 001318 819 YVMSASGGKISLFNMMTFKT------MATF--MP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~------~~~~--~~-----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l 885 (1101)
+|.+++||.|+=|....... +.+. .. .-.+|+++-..|..+.+|. ++.|+.++-||+++|+..+++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 88899999999888754322 1111 11 2346899999995555555 458999999999999999999
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC--CCCCCCeEEEEcCCCcEEEEEeCCeEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIHFLVVHETQLA 963 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~la~~~d~~v~ 963 (1101)
+||++-|.++.--.....+.||++||++|+||.++++.... +....... .+...-.-.+..-+..+|+++....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 99999999999866667899999999999999999764322 11111110 000111124556677799998888999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEe
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1043 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 1043 (1101)
+|.+...++...+.. ..++..+.|- ...+++++....|.-|.+. |.+...+...... -+..+..-+
T Consensus 231 lwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~--------c~s~s~~~~ 296 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTA--------CYSASWQTS 296 (325)
T ss_pred EEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccc--------eeeecccCC
Confidence 999999999988876 4578888885 4567778888889999874 5555444411111 221122233
Q ss_pred CCCCCEEEEEecCCcEEEE
Q 001318 1044 PQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1044 ~~d~~~l~s~~~dg~v~vW 1062 (1101)
| -+++-.++..+.+.|+
T Consensus 297 p--~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 297 P--IKFISIAGFSNKLHIL 313 (325)
T ss_pred c--eEEEEecccceeeeee
Confidence 3 3566666666666665
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=3.7e-18 Score=186.32 Aligned_cols=285 Identities=19% Similarity=0.269 Sum_probs=212.6
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
-+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.++. ...||.+.|+.++.+.++. ++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence 478999999999999999999999999999999999988776 6899999999999998887 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
.+.++.++..+.||++.|++++|+|.. +.+.||++++||.+- .... +.|...
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~~~-------------y~prp~-------- 311 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EPRI-------------YVPRPL-------- 311 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-cccc-------------cCCCCC--------
Confidence 999999999999999999999996643 778899999998871 1100 000000
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+..++ ..+.++.|...+..+++++.|+.-..|...-.
T Consensus 312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---- 348 (1113)
T KOG0644|consen 312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL---- 348 (1113)
T ss_pred ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence 00000 12334555556666777777776665543211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
T Consensus 349 -------------------------------------------------------------------------------- 348 (1113)
T KOG0644|consen 349 -------------------------------------------------------------------------------- 348 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
++...+-.+++...|
T Consensus 349 -----------------------~~~~~~lif~t~ssd------------------------------------------ 363 (1113)
T KOG0644|consen 349 -----------------------AWRSNLLIFVTRSSD------------------------------------------ 363 (1113)
T ss_pred -----------------------hhhccceEEEecccc------------------------------------------
Confidence 000000001111110
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
-..+.+++- +..+.+|++.+|...+.+.+|...+..+.++|.+.++..+++.||...|||+-.|.
T Consensus 364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 001233333 56789999999999999999999999999999888888899999999999998887
Q ss_pred Eeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 881 VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 881 ~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.++.. .+| +.+..-+||+||..++....-|.+.|.....++
T Consensus 430 pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 430 PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 66554 455 456677999999999988888888888765544
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.2e-17 Score=190.56 Aligned_cols=278 Identities=13% Similarity=0.171 Sum_probs=209.9
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCce----EEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
+.+.++.+|.+........+..... .....+-..++|.+.|.. |+.+..||.|.+|+......
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------- 102 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------- 102 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------
Confidence 4456777777665444332221111 114567788999988776 77777899999999743100
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeEec--CCCCCeEEEEEecCCC
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 859 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 859 (1101)
+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 103 --------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 103 --------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred --------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 110000111224999999999999776 899998 8999999998766555542 2456899999998778
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCccc--CeeEEEEcCCC-CEEEEEeCCC---ceEEEeCCCcccccceeeecCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~dg-~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
++||+++.+|.+.|||++..+.+-.+..|.+ .+..++|+|++ ..|++++.|. .|.+||++.- ...+++.+
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 9999999999999999999888877776655 46789999986 5666666653 5999998763 34566777
Q ss_pred CCCCCCCCCeEEEEcCCC-cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEEcCCeEEEEE
Q 001318 934 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1010 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg-~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s~dg~v~vwd 1010 (1101)
+|.. .|.++.|++.+ ++|++ +.|++|.+|+.++++.+..+.. ....+..+.|+|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 8875 89999999977 67777 6999999999999999999874 468999999999655 788999999999999
Q ss_pred cCCce
Q 001318 1011 AANLK 1015 (1101)
Q Consensus 1011 ~~~~~ 1015 (1101)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 97665
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.8e-16 Score=177.82 Aligned_cols=306 Identities=17% Similarity=0.283 Sum_probs=211.0
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc---ccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
...+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-...|..++++|+.||.||+|+-
T Consensus 1063 n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344566788888888 5788887789999999999998887643 35688888877777789999999999999954
Q ss_pred CCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 528 DNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 528 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
-... ...++ |+ +|++-. ....+..+.. ..+.|.....+|+++|+-..|+|||......+..+..... .
T Consensus 1141 y~~~~~~~eL------VT--aw~~Ls-~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t 1209 (1387)
T KOG1517|consen 1141 YADKWKKPEL------VT--AWSSLS-DQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-T 1209 (1387)
T ss_pred cccccCCcee------EE--eecccc-ccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-c
Confidence 3221 11111 11 111111 0111112222 5677887778888888899999999999888888765433 3
Q ss_pred CcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 607 ASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 607 ~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
.++++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------------- 1244 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------------
Confidence 455554433 5799999999999999997654110
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc--eEEEEEcCCCce-EEeeecCceE
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIH 762 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~dg~i 762 (1101)
..|.+|. .|+.. |..+.+.+.|-. |++++.+|.|
T Consensus 1245 -------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1245 -------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred -------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 1122221 13333 888888886655 9999999999
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEe
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF 842 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~ 842 (1101)
++||++.......... +.-|+ ..+..+++.++++...+|+|+.+.|+||++.. +.+..+
T Consensus 1282 ~~~DlR~~~~e~~~~i-----v~~~~---------------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~ 1340 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTI-----VAHWE---------------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNII 1340 (1387)
T ss_pred EEEecccCccccccee-----eeccc---------------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhccc
Confidence 9999865311000000 00000 13358999999999999999999999999863 444443
Q ss_pred cC-------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 843 MP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 843 ~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+. ..+.+.|++|+| ..-++|+|+.|.+|.||.....
T Consensus 1341 k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 32 235689999999 8889999999999999987654
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.8e-17 Score=173.01 Aligned_cols=229 Identities=16% Similarity=0.286 Sum_probs=179.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEcc-----CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
.+..|.+.|+.++|.|-...|++++.||++++|+++ ....+.++.+|.+|.++|.|++..+++. .+.+|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3345678889999999999999999999 799999999
Q ss_pred cEEEEeCC------CC----ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC--Ccee
Q 001318 477 TIKVWDAT------NG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT 544 (1101)
Q Consensus 477 ~i~iwd~~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~v~ 544 (1101)
+|+.|++. +. .....+.||++.|+.++++... ..|++++.||+++.|+...... .++.... +...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999553 11 2335678999999999987665 5799999999999998876554 2222221 1112
Q ss_pred EEEEccCC--------c---------------eEEec------cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001318 545 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 595 (1101)
Q Consensus 545 ~~~~s~~~--------~---------------~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1101)
++.+.... + .++.. .....+..+..+|.....+++..|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22221110 0 11111 1123466678889999999999999999999999999
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.....+. ..++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 98887554 47999999999999999999999999987654
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.4e-15 Score=152.23 Aligned_cols=241 Identities=14% Similarity=0.202 Sum_probs=183.8
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--CeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--g~v~vwd~~~~~~~ 882 (1101)
...+..+.|..+...|..|+....++|.................|..+-|+. .++|..+.+ +.+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3456677799999999999966678888876554333333344577777876 366666654 35999999988877
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E--eC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~--~d 959 (1101)
..+. ...+|.+|.+. .++|+++=.+. |.|||+++.+. +.......+-...+.++.+++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7765 45679999995 45666665554 99999998543 3333322221234566666677789998 3 66
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
|.|.+||+.+.+.+..+. .|.+.+.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|+.... + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999988887 89999999999999999999999998 89999999999999985444 2 3344
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|+| |+.+|++.|..++|+++++....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 78999999999999999998766
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.4e-16 Score=156.35 Aligned_cols=168 Identities=16% Similarity=0.234 Sum_probs=126.4
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC------CceEEEec-CcccCeEEEeeeecCCccEEEEEecC
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 519 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d 519 (1101)
.+.+|.+.|+++.|+.+++ +|++|+.|..+++|++.. .+++.... .|...|.|++|. ....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCeeEecCCCc
Confidence 4668999999999999988 899999999999999863 45565553 356889999984 344799999999
Q ss_pred CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEE
Q 001318 520 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 598 (1101)
Q Consensus 520 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 598 (1101)
++|..-|+.+.+.+..+.... ..+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~-------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENN-------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccC-------------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 999999999876655443221 11245555666666889999999999999998765 3322
Q ss_pred EcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCc
Q 001318 599 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 599 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+-.........++.|+| ...+|++.+..+-+-+||.+..
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 22222233567899999 5677888888899999998755
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.2e-16 Score=151.94 Aligned_cols=259 Identities=15% Similarity=0.232 Sum_probs=187.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCC-------cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
.+.|.+.|+.++-+|..+.+|+|...+. .+.||.+........ .. ..+....+-..+-+.|.|+
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCceeeE
Confidence 4457899999999999988999886632 467888754322210 00 0111111223566799999
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCcee-eee--eeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQH--LEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~--~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|.|++..||+-. |..|.+|+++.+..+ ... ..-.+|....++-+|+| |+. .+++ ..|+++..||+++.++
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~t-t~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVAT-TSDSTLQFWDLRTMKK 205 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEE-eCCCcEEEEEccchhh
Confidence 9999999999876 888999999987653 211 01123667788999998 565 3444 4578999999999888
Q ss_pred EEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 489 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 489 ~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
...+ .+|...|..+.|+++.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|.|.-.
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd------------- 271 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD------------- 271 (370)
T ss_pred hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence 7666 46888899999977554 689999999999999998754 5678899999999999988765
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCc-----------------------------eeEEEcCCCCCCCcCeEEEcc-C
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D 616 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~ 616 (1101)
+++++|+.|..|.+|...+-. .+.++. .+...|++++||. |
T Consensus 272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD 342 (370)
T ss_pred -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence 467888888888888653211 112333 3345799999998 5
Q ss_pred CCEEEEEeCCCcEEEEEec
Q 001318 617 GCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 617 ~~~l~~~~~dg~i~iw~~~ 635 (1101)
.-.+|+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 5567778999999876654
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=157.03 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=118.5
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.++++-..|+|++||..+|+.+..|+++...++.+.|......+.+++|+.||+|++||++.......+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------- 111 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------- 111 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----------
Confidence 5788888999999999999999999999999999999765456789999999999999999865443222
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEe----CCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEcc-CCCEEE
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 621 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~ 621 (1101)
+.++...++.+++.+..++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus 112 --------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 112 --------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred --------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 1122223555566655666677764 477899999998876 44443 45566899999999 788999
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998654
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=2.6e-15 Score=166.20 Aligned_cols=257 Identities=11% Similarity=0.090 Sum_probs=166.5
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECC-CCce--eeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~ 878 (1101)
......++++|++++|+++. ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567789999999998875 6889999986 3332 22222 234567899999 787777765 488999999974
Q ss_pred -ce---EeeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccc---eeeecCCCCCCCCCCCeEEEEcCC
Q 001318 879 -DE---VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 879 -~~---~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+. .+..+.+ .....+++++|+|+++++++ .++.|.+||+++...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 32 2233332 23467789999999886554 568999999976322110 11122222 24578999999
Q ss_pred CcEEEEE--eCCeEEEEEcCC--c--eeeeeccC--C--CCCCCeeEEEEcCCCCEEEEEEc-CCeEEEEEcCCceeeee
Q 001318 951 QIHFLVV--HETQLAIFETTK--L--ECVKQWVP--R--ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 951 g~~la~~--~d~~v~vwd~~~--~--~~~~~~~~--~--~h~~~i~~l~~spdg~~l~s~s~-dg~v~vwd~~~~~~~~~ 1019 (1101)
|++++++ .++.|.+|+++. + +.+..+.. . .+......+.|+|||++|+++.. ++.|.+|+++......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999884 478999999973 2 22333221 1 11223446899999999988854 78999999964321111
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEeccCCCccccCCCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGVPPPV 1077 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~~~~~~~~~~~~~ 1077 (1101)
+. ...+.+ ..+..++++| ||++|+++.. +++|.+|++....+.+.....+
T Consensus 266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~ 316 (330)
T PRK11028 266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTELGRY 316 (330)
T ss_pred Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEcccc
Confidence 11 011111 2233689999 6777776664 8999999986554444443333
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4e-17 Score=168.42 Aligned_cols=321 Identities=16% Similarity=0.204 Sum_probs=233.2
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
.|.+|.+.|+.|.|...|. .+++|+.|..|.+||+.+++.+..+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999999888776 579888888888888777899999999999987
Q ss_pred ecCCCCc---eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 526 LYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 526 d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
.+...+. ...+..|.+.|..++.-|+.. ..|++++.|+.+.-+|++.+.+...+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 7655433 234566777788888777765 46899999999999999887665544322
Q ss_pred CC--C--CCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccc
Q 001318 603 GG--L--PASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 677 (1101)
Q Consensus 603 ~~--~--~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1101)
.. . .....++..| +...+++|+.|..+++||.+.-.+. ...+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence 11 1 2456788888 4558999999999999987543110 0000 000 111110
Q ss_pred cccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee
Q 001318 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 757 (1101)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 757 (1101)
+ . ......|++++|+.++.-++++.
T Consensus 331 --------------------------l-----------------------~------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 --------------------------L-----------------------V------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred --------------------------c-----------------------c------ccCcccceeEEecCCccceeeee
Confidence 0 0 01446789999999998899999
Q ss_pred cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE-ecCCCEEEEEeC-CeEEEEECCC
Q 001318 758 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT 835 (1101)
Q Consensus 758 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~-s~dg~~la~~sd-g~i~vwd~~~ 835 (1101)
.|-.|++++-..+.. .......++ ........+++.....|..+-| -|...|+++|+| |.|.||+-.+
T Consensus 356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 999999985432211 000000000 1122222344333445777765 588999999997 9999999999
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
++.++.+.+...-|+||.-+| ---+||+.+-|.-|+||.-.+.
T Consensus 426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence 999999998888899999999 6779999999999999987443
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=6.7e-18 Score=184.34 Aligned_cols=245 Identities=18% Similarity=0.314 Sum_probs=188.3
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
+.+.++++|...|.|+.|...|.| +++|+.|..|+||..+++.++.. ..||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence 345668899999999999999997 99999999999999999998874 8999999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE---e
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 492 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~ 492 (1101)
+.+..++|+++.|..|++|.+.++..+. .+.||.+.|++++|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999988766 68899999999999984 4778999999999872111111 1
Q ss_pred cC-cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 493 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 493 ~~-h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
+. ...-+.++.| ..++..+.+++.|+.-..|.+...... ...+.-+..+.+
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd-------------------- 363 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD-------------------- 363 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence 11 1233444444 456678999999999888865431110 000000011101
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccc
Q 001318 572 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
...+.+++-.+..+++|++.+|..++.+.++.+ .+..+.++| +.+...+++.||...|||+-.|..
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 013466677788899999999999999887766 566799999 666777889999999999988833
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=151.31 Aligned_cols=308 Identities=12% Similarity=0.164 Sum_probs=197.4
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI 522 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i 522 (1101)
+++.+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+...+ + ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceE
Confidence 4456889999999999988875 8999999999999999999888888 5677788776433 2 478999999999
Q ss_pred EEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEc-
Q 001318 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSID- 600 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~- 600 (1101)
.+|++....-... +.-.++++.|.+..- +.+.... ...++.-++.. .+.+-|......+...+
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEE---eeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence 9999876333221 112222222221110 0000000 01111111100 02222222222222211
Q ss_pred -CCCCCCCcCeEEEcc-CC--CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccc
Q 001318 601 -ADGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 676 (1101)
Q Consensus 601 -~~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1101)
.....+.+.|..+.. ++ -++++|.++|.+.+||+.++...+ .+....
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~---------------------------- 195 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSS---------------------------- 195 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-cccccc----------------------------
Confidence 111223454444322 23 256778889999999998872222 121100
Q ss_pred ccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEee
Q 001318 677 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL 756 (1101)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 756 (1101)
. ...+...|..++.++.|.+.-..=+.+
T Consensus 196 ----------------------------------------k------------v~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 196 ----------------------------------------K------------VESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ----------------------------------------c------------cccchhhccCcceeeeechhhcCCcCC
Confidence 0 001112377889999998776666777
Q ss_pred ecCceEEeeeccccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC
Q 001318 757 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM 834 (1101)
Q Consensus 757 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 834 (1101)
+.+..+..|+++.. +|.+. .....- .+-.+..+.+-||++.+|+++ |+.||||..+
T Consensus 224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 77778888877432 11110 101111 234577888999999999999 9999999999
Q ss_pred CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 835 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 835 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
+.+.+..++-|...|++++|+| +..++|.++.|++|.+|++
T Consensus 282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999 8899999999999999986
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-16 Score=156.55 Aligned_cols=289 Identities=16% Similarity=0.191 Sum_probs=195.0
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCceEEE--ecCcc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE 496 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~ 496 (1101)
..+|++...|.|++||..+++.++ .+++|...++.+.|..+ +.+ .+.+|+.||+|++||+++...+.. +..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 568889999999999999988776 68889999999999875 333 799999999999999998765543 44455
Q ss_pred -cCeEEEeeeecCCccEEEEEec----CCcEEEEecCCCCc-ee-eecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 497 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS-RV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 497 -~~v~~v~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~-~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
.+..+++ ...+++.+++|.. |-.|.+||++..++ +. -...|...|+++.|.|...
T Consensus 117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p---------------- 178 (376)
T KOG1188|consen 117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP---------------- 178 (376)
T ss_pred CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence 3344443 3335567777653 56799999998776 33 3456778888888888766
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCcccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.|++|+.||-|.+||+.... ++.++. +...|.++.|..++ +.|.+-+..++..+|+++.+. ....+
T Consensus 179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~ 250 (376)
T KOG1188|consen 179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWL 250 (376)
T ss_pred ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcc
Confidence 789999999999999986542 223332 22358889999877 458888899999999999884 22222
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC-CCcceeeeccccCC
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES-NDKSKVWKLTELSE 723 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~ 723 (1101)
........ ..... .... +.-+...-.+....+.++. .+...++-+.....
T Consensus 251 ~~~~~~~~--------d~r~~--------------------~~~d-Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s 301 (376)
T KOG1188|consen 251 ENPDVSAD--------DLRKE--------------------DNCD-YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS 301 (376)
T ss_pred cCccchhh--------hHHhh--------------------hhhh-heeecccCCCcceEEEeccccCceeEEEeeeccc
Confidence 21100000 00000 0000 0001111123344444443 56677766654333
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeec
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
............+|..-|+++.|...+..+.+++.||.+.+|..
T Consensus 302 ~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 33333444444568888999999999999999999999999985
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=147.23 Aligned_cols=228 Identities=15% Similarity=0.228 Sum_probs=170.9
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEEEEcC-------CeEEEEEccC
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSR-------HIVQIYSYHG 438 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d-------~~i~iwd~~~ 438 (1101)
|+.|.+-+++.+.. .+...++..|.+.|+.++-+| |.+.|+++..+ ..+.||.+..
T Consensus 39 dNqVhll~~d~e~s----------------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe 102 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGS----------------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE 102 (370)
T ss_pred cceeEEEEecCccc----------------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc
Confidence 56677666655432 234446888999999999999 77788887653 2478999865
Q ss_pred Cce------eeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEec-----CcccCeEEEeee
Q 001318 439 GDE------VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFE-----GHEAPVYSVCPH 505 (1101)
Q Consensus 439 ~~~------~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-----~h~~~v~~v~~~ 505 (1101)
... +.....|. .+-+.|.|+.|.|++. .+++-. |..|.+|++..+.. +..+. +|....++-+|+
T Consensus 103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred ccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 322 11122233 4567899999999998 465554 88999999998776 33332 356677888898
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
+.-+++.+++.+ |+++..||+++..+...+ ..|...|..+.|+|+-+ .+|++++.||.
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq--------------------~~lvt~gDdgy 238 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQ--------------------HILVTCGDDGY 238 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCce--------------------EEEEEcCCCcc
Confidence 888888777765 799999999988776655 45677788888888766 46889999999
Q ss_pred EEEEECCC-CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecC
Q 001318 585 IKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 585 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|++||.+. ..++..+..|.| .|.++.|+| ..+++++|+.|..|.+|....
T Consensus 239 vriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 239 VRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEEEeccCCCccccccCCCce--EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999975 446777776666 899999999 567888999999999997653
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=142.89 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=175.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
..|.+-+++|.+++ +++|..+|.|.+..+.+--.-.. ........-...+|.++|+.++|. ..+|++|
T Consensus 11 ~tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 11 NTVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 34667789999996 99999999999999865211110 000001111357999999999999 5667777
Q ss_pred EcCCeEEEEEccCCce---eeeeee--ecccc-----CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 426 YSRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
+. |.|+-|.+..... .+...+ ..-|. -.|+++-..|... -++.++.|+.++-||+++|+..++++||
T Consensus 79 gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 79 GD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred cC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 64 9999998764322 111101 11222 3689999998877 4666678999999999999999999999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
++.|.++.-. .....+++|+.||++|+||.++.+....+.....+ .....+...-| .+..-+..+
T Consensus 156 tDYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wi--gala~~edW 220 (325)
T KOG0649|consen 156 TDYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWI--GALAVNEDW 220 (325)
T ss_pred cceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCcee--EEEeccCce
Confidence 9999998852 22347999999999999999998877655432210 11111111122 233334457
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
+++|+ ...+.+|++++.++...+....+ +..+.|.. ..+++++..+.|.-|.+..
T Consensus 221 lvCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 221 LVCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEecC-CCceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeecc
Confidence 77765 45799999999999888876654 66778854 4677777778888887653
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.3e-15 Score=169.12 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEee
Q 001318 809 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKS 883 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~ 883 (1101)
.-+.|.....+|++++ -..|+|||.....++..+.. ....|+++.-+-..|.++|+|..||.|++||.+.. ..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 3456666555666655 57899999998777777653 34567888766657899999999999999998753 3567
Q ss_pred eecCcccC--eeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 884 KLKGHSKR--ITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 884 ~l~~h~~~--V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
..+.|+.. |..+.+-+.|- .|++|+.||.|++||++.........+..... ..+..+++..+++...+|+|+.+
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~---yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE---YGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc---cCccceeeeeccCCCeeeecCcc
Confidence 77889888 99999988765 49999999999999998853222222211110 01248999999999999997779
Q ss_pred eEEEEEcCCceeeeeccCC-----CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 961 QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~-----~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.|+||++... .+..+... ...+.+.|++|.|-.-+||+|+.|.+|.||......
T Consensus 1326 ~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999999743 33333221 125678999999999999999999999999877654
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=1.4e-15 Score=170.02 Aligned_cols=263 Identities=20% Similarity=0.262 Sum_probs=193.0
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+.-...|+|++|+|....++|.|..+|.|.+||+..+...... ........|..+|+.+.|-
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------GLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------ccccccccCCcCeEEEEEe
Confidence 344466678999999999999889999999999999999887652110 1112467899999999998
Q ss_pred cCCCe--EEEEEcCCeEEEEEccCCceeeeeeeec---------cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe---
Q 001318 417 PDGSL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD--- 482 (1101)
Q Consensus 417 pdg~~--las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd--- 482 (1101)
.+-.- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|..=+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence 85444 9999999999999887533211111111 12346899999998877 688999999987733
Q ss_pred CCCCc-----eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC-CCCceeeecCCCCceeEEEEccCCceEE
Q 001318 483 ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 483 ~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
...+. .+..+..|.++|+++.+++-.. ..+++++ |.++++|... ...+...+..+...+++++|||-..
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--- 454 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--- 454 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc---
Confidence 22222 2335567899999999876554 3455555 9999999887 5566666676777788888888665
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
..|+++..||.|.+||+.... ++.+.... ....+.+.|+++|+.|++|...|.+.+|++
T Consensus 455 -----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 455 -----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred -----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 358888899999999997544 34443333 335677889999999999999999999998
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
...
T Consensus 516 ~~~ 518 (555)
T KOG1587|consen 516 SES 518 (555)
T ss_pred Cch
Confidence 644
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3e-16 Score=165.39 Aligned_cols=276 Identities=17% Similarity=0.251 Sum_probs=182.9
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC--------CceEEEecCcccCeEEEeeeecCCccEEEEEec
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 518 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~ 518 (1101)
++..|.+.|..++|.+-.. .|++++.|+++++|+++. -+++.+|.+|.++|.|+++ ..+++.+++|+.
T Consensus 289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI 364 (577)
T ss_pred eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence 5677999999999999888 799999999999999932 2567899999999999997 466789999999
Q ss_pred CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 001318 519 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS 598 (1101)
Q Consensus 519 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 598 (1101)
||+|+.|++........ .+. ... ....+.||.+ .++.+++++....|++++.||+++.|+.....+ .+
T Consensus 365 Dg~I~~w~~p~n~dp~d--s~d--p~v------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDD--SYD--PSV------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred CceeeeeccCCCCCccc--ccC--cch------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence 99999997763211110 000 000 1123444444 667777787778899999999999999876665 33
Q ss_pred EcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccc
Q 001318 599 IDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 677 (1101)
Q Consensus 599 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1101)
+........-.++.+-... .+.++...-+.-.+++.... .
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~-s-------------------------------------- 473 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV-S-------------------------------------- 473 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh-h--------------------------------------
Confidence 3322221122333332211 11111111111111111111 0
Q ss_pred cccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee
Q 001318 678 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 757 (1101)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 757 (1101)
.+.+.+ .+
T Consensus 474 -----------------------------------------------------------------~~~~~~-------s~ 481 (577)
T KOG0642|consen 474 -----------------------------------------------------------------DLLIFE-------SS 481 (577)
T ss_pred -----------------------------------------------------------------heeecc-------cc
Confidence 000000 00
Q ss_pred cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC
Q 001318 758 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF 836 (1101)
Q Consensus 758 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~ 836 (1101)
..... .....+.-+...|.+.+.+++. |+.|+++|..++
T Consensus 482 ~~~~~----------------------------------------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 482 ASPGP----------------------------------------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred CCCcc----------------------------------------cccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 00000 0122344556667777777777 899999999999
Q ss_pred ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 837 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
..+.....|...++++++.| +|-+|++|+.||.+++|.+....++.....|..
T Consensus 522 ~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred ccchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence 99999999999999999999 999999999999999999988777776666653
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=3.1e-14 Score=142.76 Aligned_cols=255 Identities=14% Similarity=0.171 Sum_probs=167.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecC---CCCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeec
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV 878 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~ 878 (1101)
....|.++.+. .+.|+++-.+.|+|||+++.+.++++.. +...+.++++++ ++.+||.=+ ..|.|.|||+.+
T Consensus 86 fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 35567777764 4577777777799999999999988754 344567777777 677888743 568999999999
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 956 (1101)
-+.+..+.+|.+++.+++|+++|.+|||++.-|+ |||+.+..|++ ..+..+|... ..|.+++|+||+.+|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----l~eFRRG~~~--~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----LYEFRRGTYP--VSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----eeeeeCCcee--eEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999988 68999998764 4455555543 68899999999999999
Q ss_pred EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCc
Q 001318 957 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
+..++|++|.+.+-..-..-.+. ...-..-.++ +.+. +. -.+.-.+||..- .....+ ++.. +.-
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~--~~~~~~~~~s---k~~~-sylps~V~~~~~~~R--~FAt~~----l~~s---~~~ 301 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPT--AGTSWFGKVS---KAAT-SYLPSQVSSVLDQSR--KFATAK----LPES---GRK 301 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCC--CCCcccchhh---hhhh-hhcchhhhhhhhhcc--ceeEEE----ccCC---Ccc
Confidence 57789999998765421110000 0000000011 0001 10 011122355432 222222 2221 101
Q ss_pred cceEEEEeC-CCCCEEEEEecCCcEEEEeccCCC--ccccCCCCCCCCCCCC
Q 001318 1036 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSS 1084 (1101)
Q Consensus 1036 ~~~~i~~~~-~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~ 1084 (1101)
. .+++.+ +...++..++.||.++.+++.-.+ +.+-+.+-+-.|.+..
T Consensus 302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t 351 (391)
T KOG2110|consen 302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDT 351 (391)
T ss_pred c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccc
Confidence 1 233432 256789999999999999996643 4444444444454443
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.8e-16 Score=159.95 Aligned_cols=275 Identities=12% Similarity=0.159 Sum_probs=203.5
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 418 (1101)
+-.|.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +
T Consensus 138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~ 198 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG 198 (559)
T ss_pred ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence 335999999999999999 599999999999999999887654 4679999999999998 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---cCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH 495 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h 495 (1101)
.+.+++++.||.|++=.+...........+..|.++|.-++.-|+..+ .|.+++.|+.+.-.|++.+.....+ ..+
T Consensus 199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence 678999999999999887655445545567789999999999999887 7999999999999999887654333 223
Q ss_pred cc---CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 496 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 496 ~~---~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
.. ..+.++..+... ..+++++.|..+++||.+.-..... .+.+. .|.|. .+.......|+++.|+.+
T Consensus 278 ~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD 347 (559)
T ss_pred CccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence 33 355667655443 5899999999999999875332210 00000 01111 111122336777777777
Q ss_pred CCEEEEEeCCCcEEEEECCC--C----------ceeEE-EcCCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 573 KNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+.-++++..|-.|++++-.- | ..+.. +++|.....|..+-| -|...++++|++-|.|.||+-.++
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~- 426 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG- 426 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence 77788888888999995432 2 22233 677777677888875 568899999999999999998888
Q ss_pred cccccccc
Q 001318 639 RLLRTFEN 646 (1101)
Q Consensus 639 ~~~~~~~~ 646 (1101)
+.++.+++
T Consensus 427 eii~~Meg 434 (559)
T KOG1334|consen 427 EIIRFMEG 434 (559)
T ss_pred HHHHHhhc
Confidence 66666654
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=4.6e-15 Score=143.22 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=186.4
Q ss_pred cccCCCCcEEEEEecCCC----eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~----~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.|.-+++.+.|.|+.+ .||||.+ ..+++|.+...+..... ...+....-..+..++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 467999999999999873 3677655 79999998753221100 0011111234567899999999
Q ss_pred c-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---
Q 001318 417 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--- 492 (1101)
Q Consensus 417 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 492 (1101)
. |-++|.+++-|-+..|||++++..-.....|-+|...|..++|...+.+ ++++.|.||+||++|++.-+.-..+
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 8899999999999999999997432222347789999999999998877 8999999999999999876543322
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.....+...++|+. .|-+++++-..| ..|.+.|++... ....+..|...|..++|.|...
T Consensus 239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~----------------- 300 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS----------------- 300 (364)
T ss_pred CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence 22245667788864 445678877765 578899998764 4567899999999999999876
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc------eeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 631 (1101)
..+.++|.|..+-+||+...- ++..+. ....|+.+.|++ .+.+++++.. +.+.+
T Consensus 301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ---ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 679999999999999997532 222222 234689999997 6778887764 44443
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.8e-14 Score=137.84 Aligned_cols=255 Identities=15% Similarity=0.242 Sum_probs=179.5
Q ss_pred eecccCCCCcEEEEEe--cCCCeEEEEEec----CCcEEEEeCC--CcceeEeeeeeeeecCCCCcccccccccCCCCCe
Q 001318 339 TRTLNQGSSPMSMDFH--PVQQTLLLVGTN----VGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 410 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~s--pdg~~llatg~~----dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 410 (1101)
.....-.-.+.++.|| |+.++.||.|+. .+.|.|-.+. +++.+.. .-..|.-++
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~ 99 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPV 99 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCc
Confidence 4455556778889998 667777999986 3345554433 3333221 224788999
Q ss_pred EEEEEecCCC-----eEEEEEcCCeEEEEEccCCc-eeeeeeee-----ccccCCeeEEEEcCCCCeEEEEEecCCCcEE
Q 001318 411 NRVIWSPDGS-----LFGVAYSRHIVQIYSYHGGD-EVRQHLEI-----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 411 ~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~l-----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~ 479 (1101)
+.+-|.||.+ +||+++ ..+++|.+...+ .+.....+ ..+..++++..|+.-... ++.+++-|.+..
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCT 176 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCT 176 (364)
T ss_pred cceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEE
Confidence 9999999873 566654 469999987422 12211122 246679999999987766 899999999999
Q ss_pred EEeCCCCce---EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee-ecCC--CCceeEEEEccCCc
Q 001318 480 VWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAP--GRWCTTMAYSADGT 553 (1101)
Q Consensus 480 iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~--~~~v~~~~~s~~~~ 553 (1101)
|||+++|.. ...+-+|..+|..++|.. +..+.+++.+.||.+|+||++..+.... ++.+ ..+...++|++...
T Consensus 177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 999998743 456778999999999975 4447999999999999999997554322 2222 22333344433332
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIK 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 630 (1101)
+++++-. ....|.|.|++.. .++..+..|. ..|+.++|.| ....|.++++|..+.
T Consensus 256 --------------------nymATf~~dS~~V~iLDiR~P~tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 256 --------------------NYMATFAMDSNKVVILDIRVPCTPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred --------------------hHHhhhhcCCceEEEEEecCCCcceehhhcCc--ccccceEecCCCCceeeecCCcceEE
Confidence 4566644 4467899999864 4667777554 4799999999 677999999999999
Q ss_pred EEEecCc
Q 001318 631 ILATSDG 637 (1101)
Q Consensus 631 iw~~~~~ 637 (1101)
+||+...
T Consensus 314 iWDl~q~ 320 (364)
T KOG0290|consen 314 IWDLQQM 320 (364)
T ss_pred EEecccc
Confidence 9998754
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1e-15 Score=156.39 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=160.7
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC
Q 001318 809 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 887 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 887 (1101)
..++|+.+|..+++++ ||++|+|+..+...+.....|..+|.++.||| |+++|++-+.| ..+||++.++..++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999977766643
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC
Q 001318 888 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE 959 (1101)
Q Consensus 888 --h~~~V~~l~~s~dg-----~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d 959 (1101)
-......+.|+.|+ ...+....-+.|+.|++..+.............. ...|++++.|+||+++|. +.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCcceeEEEcCCCcEEEEeccC
Confidence 22346678888887 3344455567788888776544211111111111 137899999999999999 589
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
|.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|.++.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999887654 68999999999999999999999999999987754
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=2.6e-14 Score=160.01 Aligned_cols=285 Identities=16% Similarity=0.164 Sum_probs=192.0
Q ss_pred CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce--EEE----ecCcccCeEEE
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 502 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~v 502 (1101)
+.+.||+++...... ..+. -...|.+++|+|.... +++.|..+|.|.+||++.+.. ... ...|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~~-~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVLE-SPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEEe-cCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999999863222 2232 4678999999999887 789999999999999987765 222 23588899999
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
.|..+..+.-+++++.||.|..|+++......... ....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~-- 336 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLES-- 336 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------cccc--
Confidence 98877665668888889999999766432211000 0000
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
....+. . ......++++.|.+ +...+++|+++|.|.--+-........
T Consensus 337 ------~~~~~~---~---~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 337 ------KKHKGQ---Q---SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred ------cccccc---c---cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 000000 0 01123467788888 677899999999876532211100000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC-EE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YV 820 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~-~l 820 (1101)
+.|.+-. ....|.+.|+++.++|-+. .+
T Consensus 386 --~~~~~~~-------------------------------------------------~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 386 --VSYKGHS-------------------------------------------------TFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred --ccccccc-------------------------------------------------cccccCcceEeeecCCCcccee
Confidence 0000000 0001666677777777654 34
Q ss_pred EEEeCCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCcccCeeEEEE
Q 001318 821 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 821 a~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~ 897 (1101)
.+++|-+++||... ....+..+..+...+++++|||.....+|++..||.|.|||+... ..+.+..-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 44448888888876 555566666677779999999977789999999999999999753 344444445667788899
Q ss_pred cCCCCEEEEEeCCCceEEEeCCC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999965
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.9e-15 Score=154.45 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=151.3
Q ss_pred EEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceee
Q 001318 850 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 929 (1101)
.+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+++++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~----- 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL----- 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence 7899999 89999999999999999988888788888899999999999999999999999 7999999997321
Q ss_pred ecCCCCCCCCCCCeEEEEcCCC---c-EEEE-E-eCCeEEEEEcCCcee---eeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 930 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 930 ~~~~~~~~~~~~v~~~~~s~dg---~-~la~-~-~d~~v~vwd~~~~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
+.... .........+.|+.|+ . ++++ . .-+.|+.||+..... .+....-.-...|+++++|+||++++.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11110 1111356788898887 3 3333 2 445666666543222 1111111124589999999999999999
Q ss_pred EcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1001 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1001 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
+.||.|.|++..+.+.+.-++ .-| . ..+..+.|+| |.+++++.+.|....|..+.-.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH-~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAH-L--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhh-e--eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999999888776554 222 2 2344999999 7899999999999999988653
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=6.5e-15 Score=153.51 Aligned_cols=208 Identities=17% Similarity=0.218 Sum_probs=162.0
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
....++.++.||.+.+.+-....+. ....|.+.|.+-.|+|||.-|++++.||.|++|.-
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~rVE~--------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr------------ 133 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSARVER--------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR------------ 133 (737)
T ss_pred CcceEEEEcCCceEEEecccchhhh--------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEec------------
Confidence 3467888888998887764432111 11448899999999999999999999999999974
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
+|.+... +.. ....|+|++|.|+...++.+..+.+.+=.+.....+-..+.|++-|.++.|++ -+
T Consensus 134 -----------sGMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s 198 (737)
T KOG1524|consen 134 -----------SGMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QS 198 (737)
T ss_pred -----------cchHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cc
Confidence 3332222 111 57789999999999999998888888888887777788899999999999999 88
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
.++++|++|-..+|||-. |..+..-..|.-+|++++|.|| +.++.++. .++|+=..+.
T Consensus 199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~------------------- 256 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV------------------- 256 (737)
T ss_pred cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCc-------------------
Confidence 999999999999999965 6666666789999999999999 55555553 3454221111
Q ss_pred CCCeEEEEcCCCcEEEEE-eCCeEEE
Q 001318 940 QSDTRVQFHQDQIHFLVV-HETQLAI 964 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~-~d~~v~v 964 (1101)
++|..++||+||..++++ ..|.+.+
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 588999999999999984 6665543
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=2.7e-12 Score=145.99 Aligned_cols=151 Identities=17% Similarity=0.302 Sum_probs=124.1
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
+.++++.-| +++|+.-+.|++|+....+... .+.+|.+.|..+.||-||+++++.|+|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 8999999999999987222111 38899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc-CeEEEeeeecCC
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKEN 509 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~~~ 509 (1101)
+++|++++++... .+.-+|...|..+.|.|+ .++|++.|.+.++|+ ..+..+.++.+|.+ .+..++.. .+
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~--~~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVP--IG 269 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEc--CC
Confidence 9999999987665 246689999999999988 399999999999997 55666668877754 47777763 44
Q ss_pred ccEEEEEecCCcEEEEecCCC
Q 001318 510 IQFIFSTALDGKIKAWLYDNL 530 (1101)
Q Consensus 510 ~~~l~s~~~dg~i~~wd~~~~ 530 (1101)
...+++++.|+.+++|++...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 478999999999999998764
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=3.2e-14 Score=139.71 Aligned_cols=254 Identities=14% Similarity=0.150 Sum_probs=177.9
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..+|+|.||++|++. +|++-....|.||.....+.-. ..+++..|...|+++.|+|.++.|++
T Consensus 10 ~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence 578999999999995 8998888999999987665211 22368899999999999999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE----EEecCcccCeE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY 500 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 500 (1101)
|+.|..-+||....+...++..++..|...++++.|+|.+. .+++|+.-+.|.||-.+...-= +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999955555666667888999999999999999 7999999999999987654321 12234677899
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec-cccCceeEEEEcCCCCEEEEE
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
++.|++.+ -+|+.|+.|+..|++..--.... +...+..+-..+ |-|.....- ...+-+..+.|+|+|+.|+-.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 99997654 68999999999999854211000 000000000000 001111111 223456677888888899999
Q ss_pred eCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC
Q 001318 580 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTND 626 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 626 (1101)
+.|..+.+-|..... .+....... -+..++.|-.+...++ ++.|
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~-ag~~ 269 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVA-AGYD 269 (361)
T ss_pred cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceee-cCCC
Confidence 999999999987664 333333222 3456677765544444 3344
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=9.1e-14 Score=159.24 Aligned_cols=214 Identities=11% Similarity=0.110 Sum_probs=151.2
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
.+..|...|..++.+++ +.++++||.||+|++||...- ...+...++......+.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 37789999999999885 499999999999999998631 22333334444567899999999999 688889999
Q ss_pred cEEEEeCCC--Cc-----eEEEecCc-ccCeEEE-eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 477 TIKVWDATN--GA-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 477 ~i~iwd~~~--~~-----~~~~~~~h-~~~v~~v-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.|++.++.. .+ +.+....+ .+.+.++ ++........++.+..-+.|..||.+.......++...
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~------- 1193 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL------- 1193 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-------
Confidence 999999875 21 11222222 2333333 33322222478888888999999998765544332211
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC---CCEEEEEe
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST 624 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~ 624 (1101)
+.+.++.++++|.++++++|...|.+.+||++-+.++.......+ ..++.+..+|- ....++++
T Consensus 1194 ------------~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1194 ------------RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred ------------cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEec
Confidence 122455566666667999999999999999999998888865443 56777777763 24555444
Q ss_pred --CCCcEEEEEecCc
Q 001318 625 --NDNGIKILATSDG 637 (1101)
Q Consensus 625 --~dg~i~iw~~~~~ 637 (1101)
..+.|.+|++.+|
T Consensus 1261 ~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETG 1275 (1431)
T ss_pred ccCCCceeeeecccC
Confidence 4788999999998
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=1.8e-14 Score=141.50 Aligned_cols=209 Identities=15% Similarity=0.186 Sum_probs=161.8
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-C
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-N 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~ 485 (1101)
..+|+|.||++|+..+|++-....|.||.....+......++..|...|+.|.|+|... .|++|+.|..-+||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 45899999999999999999999999999999887778889999999999999999998 59999999999999983 3
Q ss_pred Cc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 486 GA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 486 ~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
++ +.-.+..+....+++.|++.. +.|++|+.-..|.+|-++....=..-. | +.......
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsK-h----------------ikkPirSt 148 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSK-H----------------IKKPIRST 148 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhh-h----------------hCCccccc
Confidence 33 334556688899999997655 689999999999998765432211000 0 00011125
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECC-----C-------------CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 564 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
+.+++|+|++-++++|+.|+..|++..- + |+++..+. ...+.+..+.|+|+|..|+-.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence 6677788887889999999999999641 1 11222222 23357899999999999999999
Q ss_pred CCcEEEEEecCcc
Q 001318 626 DNGIKILATSDGI 638 (1101)
Q Consensus 626 dg~i~iw~~~~~~ 638 (1101)
|.++.+-|...+.
T Consensus 227 ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 227 DSTVSFVDAAGPS 239 (361)
T ss_pred CCceEEeecCCCc
Confidence 9999999887664
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-13 Score=157.91 Aligned_cols=268 Identities=15% Similarity=0.167 Sum_probs=179.3
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
+.++..|...|..++.++....+++|||.||+|++||...-..-. ..++ ...++.-....+.++.+.+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEecc
Confidence 455556999999999988774479999999999999986532210 0000 1112333467899999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCC--ceee--eeee--eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~--~~~~--~~~~--l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
.|..+|+++.||.|++.+++.. +... +... +......|..-+|....+...++.+..-+.|..||++......+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1111 1111 12222234555665554433678888889999999988776655
Q ss_pred ec--CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC-CceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 ~~--~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
++ ...+.|++++.+ +.+.+++.|+..|.+.+||++-...+..+..+. .++..+...+-.
T Consensus 1189 lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 53 345779999974 555799999999999999999877666554332 344444433321
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCceeEEEcCCCC-----------------CCCcCeEEEccCCCEEEEEeCCCcE
Q 001318 569 FDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 629 (1101)
Q Consensus 569 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i 629 (1101)
+.....++++ ..+.|.+|++.+|.....+..... ......+.+...+..+++|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 2223344433 578899999999877666643211 1111223344456688999999999
Q ss_pred EEEEecCc
Q 001318 630 KILATSDG 637 (1101)
Q Consensus 630 ~iw~~~~~ 637 (1101)
+.||....
T Consensus 1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred eeccCCCc
Confidence 99998776
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=9.3e-13 Score=144.38 Aligned_cols=325 Identities=12% Similarity=0.146 Sum_probs=190.4
Q ss_pred EEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001318 513 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS 592 (1101)
Q Consensus 513 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 592 (1101)
+++-..++.|.+.|..+.+....+.........+. ++|||+++++++.||.|.++|+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~---------------------~s~Dgr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK---------------------FSPDGRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE----------------------TT-SSEEEEEETTSEEEEEETTS
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE---------------------ecCCCCEEEEEcCCCeEEEEECCc
Confidence 35566789999999998777766655433222333 455556788889999999999999
Q ss_pred CceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhh
Q 001318 593 VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 671 (1101)
Q Consensus 593 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1101)
++.+.+++.... ..++++|+||++++++. .++.+.++|..+. +.++.+.......
T Consensus 68 ~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~-------------------- 123 (369)
T PF02239_consen 68 GKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV-------------------- 123 (369)
T ss_dssp SSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T--------------------
T ss_pred ccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc--------------------
Confidence 999999875433 67899999999999775 5899999998877 4444432111000
Q ss_pred hhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc
Q 001318 672 AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN 751 (1101)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 751 (1101)
.....++.++..++...
T Consensus 124 ---------------------------------------------------------------~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 124 ---------------------------------------------------------------DGPESRVAAIVASPGRP 140 (369)
T ss_dssp ---------------------------------------------------------------TTS---EEEEEE-SSSS
T ss_pred ---------------------------------------------------------------cccCCCceeEEecCCCC
Confidence 00234667777788777
Q ss_pred eEEeeecC-ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeE
Q 001318 752 AILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKI 828 (1101)
Q Consensus 752 ~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i 828 (1101)
.++..-.+ +.|.+-|+.... ......+ ..........|+|+++|++++. ++.|
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred EEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeeccccccee
Confidence 55555444 666665542210 0000000 0234567789999999988876 6889
Q ss_pred EEEECCCCceeeEecC----CCCCeEEEEEecC---------CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 829 SLFNMMTFKTMATFMP----PPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 829 ~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
-++|.++++.+..+.. |......+ .+|. .+...++.-....+.+||..+.+.++++....+. .-+
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred EEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence 9999999887765532 22222222 2221 1222212222335556777777777777766555 667
Q ss_pred EEcCCCCEEEEE----eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 896 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 896 ~~s~dg~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
..+||+++|.+. ...+ +|.++|.++.+
T Consensus 275 ~thP~s~~vwvd~~~~~~~~-------------------------------------------------~v~viD~~tl~ 305 (369)
T PF02239_consen 275 KTHPDSRYVWVDTFLNPDAD-------------------------------------------------TVQVIDKKTLK 305 (369)
T ss_dssp E--TT-SEEEEE-TT-SSHT--------------------------------------------------EEEEECCGTE
T ss_pred ecCCCCccEEeeccCCCCCc-------------------------------------------------eEEEEECcCcc
Confidence 778888777765 2223 44455555555
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--CeEEEEEcCCceeeeecC
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--g~v~vwd~~~~~~~~~~~ 1021 (1101)
.+..+.... ...+..+.|++||+.+..+..+ +.|.|||..|.+++.++.
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 544443211 2348999999999986655443 369999999999999887
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=8.6e-12 Score=141.92 Aligned_cols=197 Identities=14% Similarity=0.203 Sum_probs=153.2
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC-----CeEEEEEecCCC
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 420 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 420 (1101)
+.|....+.-+.+. ++.++.++.+.|||...+..... ..+.. ...-+-++++.-
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 34444556666664 88888899999999987765432 11111 223345677888
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE-EecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v 499 (1101)
++++|+.-+.|.+|+..... . ...+.||.+.|.++.|+.||+ ++++.|+|.++++|++++++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999988322 1 114889999999999999999 89999999999999999998876 667899999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
+.++|.+. .+++++.|.+.++|+.+.... ..+.+|....++.+++.++....+++
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEee
Confidence 99998643 899999999999996553221 24555666677888888888899999
Q ss_pred eCCCcEEEEECCCC
Q 001318 580 GDDFSIKFWDMDSV 593 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~ 593 (1101)
+.|+.+++|++...
T Consensus 277 g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGR 290 (967)
T ss_pred ccCcchhhhhhhcc
Confidence 99999999998653
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=2.4e-13 Score=133.73 Aligned_cols=242 Identities=14% Similarity=0.190 Sum_probs=169.4
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEE-Eecc------CeEEEEEe
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAI-GMDD------SSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~las-g~~d------g~v~vwd~ 876 (1101)
....+++|..|..-+++|.|...++|+.+-.+.....+.+.+ .+..+-|- .++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999999999999876443222222222 23333332 234443 4333 48999996
Q ss_pred ecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 877 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 877 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
...+++.++. ...+|.+|.+++| .||+.- ++.|.||.....-+ ....+.+...+. .+.+++=+.+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEc
Confidence 6677777776 6788999999866 455544 56799999875322 122222222221 2223322333445555
Q ss_pred -E-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCC
Q 001318 957 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1033 (1101)
Q Consensus 957 -~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1101)
+ .-|+|+|-|+...+.-......+|...|.|++++-+|.++||+|..|+ |||||..+|+.++.++ .|....
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence 5 568999999987665322333489999999999999999999999998 9999999999999887 333344
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.++ +++|+| +..+|++.|+.|+|+|+.+...+
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 477 999999 78999999999999999997755
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.1e-15 Score=152.85 Aligned_cols=238 Identities=11% Similarity=0.160 Sum_probs=172.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--C
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 418 (1101)
+.+|++-|+|++|+.||. +|++||.|-.+.|||....+.++. +-.||...|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 567999999999999999 599999999999999998777764 5789999999999999 6
Q ss_pred CCeEEEEEcCCeEEEEEccCCc-------eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--- 488 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--- 488 (1101)
.+.+++|..|..|+++|+...+ ...+...+..|...|.-++-.|++.+ .+.+++.||+|+-+|++....
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998522 12233446679999999999999966 799999999999999986321
Q ss_pred ----EE---EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceee-----ecCCCCceeEEE-EccCCceE
Q 001318 489 ----QY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMA-YSADGTRT 555 (1101)
Q Consensus 489 ----~~---~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~~ 555 (1101)
.. .+....-...++.+++... .+|+.|+.|-..++||.+...+... ...+.....++. |+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 11 1112223355677766544 7999999999999999643222111 111122222332 34444322
Q ss_pred EeccccC---ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 556 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 556 ~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
..+.... ..+.++|+|+|..|++.-..-.|+++|+..++....+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 3332222 3556889999988888766678999999887765544
No 217
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.60 E-value=8.5e-11 Score=121.56 Aligned_cols=145 Identities=11% Similarity=0.053 Sum_probs=107.5
Q ss_pred cccceEEEEEcCCCceEEeeecCc-eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
+...|.-..+..+++.++.+..|| .+-|++. .++.+.... +.-+.|.++.+++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence 344566666666666788888887 7777765 333322221 1456799999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC----eEEEEEeecceEeeeecCccc
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
||++++++. ...|.+.|+.+++....-+...+-|+..+|+| +++++|.+--+| .|++||+..++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999887665566677899999999 999999987766 78999999887654432 223
Q ss_pred CeeEEEEcCCCCEEEEEeC
Q 001318 891 RITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~ 909 (1101)
-=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3356789999999876653
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=9.3e-13 Score=144.41 Aligned_cols=323 Identities=14% Similarity=0.117 Sum_probs=191.6
Q ss_pred eEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeE
Q 001318 466 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 545 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 545 (1101)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||++++.++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 346677888999999999999999999754433233444 6778899999999999999999987666554322 2344
Q ss_pred EEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCC-----CCCcCeEEEccCCCE
Q 001318 546 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL 619 (1101)
Q Consensus 546 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~ 619 (1101)
+++++||+++++++ .++.+.++|.++.+.+..+...+. ...+..+..++....
T Consensus 83 ---------------------i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 83 ---------------------IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp ---------------------EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred ---------------------EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 44555555677654 789999999999999988864321 224556777888775
Q ss_pred EEEEeC-CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccc
Q 001318 620 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 698 (1101)
Q Consensus 620 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1101)
+++.-. .+.|.+.|..+........
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------ 167 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------ 167 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEE------------------------------------------------------
T ss_pred EEEEEccCCeEEEEEeccccccceee------------------------------------------------------
Confidence 555544 4777666655431110000
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCc
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK 777 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~ 777 (1101)
.+ .........|+|++++++++.. ...+-++|......
T Consensus 168 -----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~----- 206 (369)
T PF02239_consen 168 -----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL----- 206 (369)
T ss_dssp -----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred -----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence 00 1123346788899988766543 56777777643211
Q ss_pred eeeeecCccccCCCccccccccCCCCCCCCeeE---------EEEecCCCEEEEE-eCCeEEEEECCCCceeeEecCCCC
Q 001318 778 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC---------FALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP 847 (1101)
Q Consensus 778 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~---------~~~s~dg~~la~~-sdg~i~vwd~~~~~~~~~~~~~~~ 847 (1101)
+..+..|... |...+.. -+....+...++. +.+.+.+||..+++.++++....+
T Consensus 207 --------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 207 --------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp --------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred --------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 0111111110 1111111 1122333333222 345677899999999999987766
Q ss_pred CeEEEEEecCCCcEEEEE----eccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCC
Q 001318 848 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS--QLCVWSSDG 920 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~ 920 (1101)
. ..+..+| +++++.+. ...++|.|+|.++.+.+.++.... ..+..+.|++||+++..+..++ .|.|||..+
T Consensus 271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 6 8888899 89999887 456899999999998887775333 3589999999999876655443 699999999
Q ss_pred ccccc
Q 001318 921 WEKQK 925 (1101)
Q Consensus 921 ~~~~~ 925 (1101)
.+...
T Consensus 349 l~~~~ 353 (369)
T PF02239_consen 349 LKEKK 353 (369)
T ss_dssp TEEEE
T ss_pred cEEEE
Confidence 66433
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.4e-13 Score=156.96 Aligned_cols=222 Identities=13% Similarity=0.129 Sum_probs=145.7
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+..|...+.+.+|||||++|+.++..+ ..|++||+.+++..... .+.+| ..+++||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS 256 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS 256 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence 34456788899999999999854443322 36999999887643210 12333 3468999
Q ss_pred cCCCeEEEEE-cCCeEEEE--EccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEe
Q 001318 417 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF 492 (1101)
Q Consensus 417 pdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~ 492 (1101)
|||++|+.++ .+|.+.|| |+.+++.. .+..+...+...+|+|||+. ++++...++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999998875 67766555 66665532 35567778899999999995 3444556788888876532 223333
Q ss_pred cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 493 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
.+.. ....| +++|++|+..+.++ +.+||+.++......... .. ....|+|+
T Consensus 332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~---------------------~~~~~sPd 382 (429)
T PRK01742 332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LD---------------------ESPSISPN 382 (429)
T ss_pred -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CC---------------------CCceECCC
Confidence 3433 34555 56677888877765 555898775433211110 11 12457777
Q ss_pred CCEEEEEeCCCcEEEEEC--CCCceeEEEcCCCCCCCcCeEEEccC
Q 001318 573 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 616 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 616 (1101)
|++++.++.++.+.+|.+ .+|+.+..+..+.. .+...+|+|-
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 788999988998888875 35777777765433 5778899884
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.6e-13 Score=153.57 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=149.8
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 443 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~ 443 (1101)
+..|.|||....... .+..|...|.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755422 256788899999999999999988654 479999999876432
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEE-ecCCCcEEEE--eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe-cC
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD 519 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d 519 (1101)
...+.+| ...++|+|||+. |+. .+.++.+.|| |+.++. +..+..+...+....|+ +||+.|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence 2234444 446899999995 444 4567765555 665655 45566676677778875 5566666554 57
Q ss_pred CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 520 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 520 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
|...+|+++..........+.. ....|+|+|+.++.++.++ +.+||+.+++.....
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS 369 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence 8889998764322111111110 1245677777887777654 666999888765333
Q ss_pred cCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec--Cccccccccccccc
Q 001318 600 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 649 (1101)
Q Consensus 600 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~ 649 (1101)
... ...++.|+|||++|+.++.++...+|.+. ++ ...+.+..+..
T Consensus 370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 221 23568899999999999999999888764 34 45555554443
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2e-12 Score=129.11 Aligned_cols=291 Identities=12% Similarity=0.149 Sum_probs=185.4
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceee
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
-..++++..|..|++|+-.. +.+..++ ......|++++|-|.+...++.+-.+.|.+|..+.......
T Consensus 110 ~~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r----- 177 (445)
T KOG2139|consen 110 IIAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR----- 177 (445)
T ss_pred hhhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-----
Confidence 34567888999999999776 3332222 22567899999999877777777777899998753211000
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCC
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 858 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d 858 (1101)
.++. . +......+.+.+| ..|+++.|.+||..+++++ +..|.|||..++..+.-..-..+.++-+.||| |
T Consensus 178 --~~~~--~--s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-d 249 (445)
T KOG2139|consen 178 --NIRM--M--STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-D 249 (445)
T ss_pred --cccc--c--cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-C
Confidence 0000 0 0011111223334 7899999999999999998 67899999999887766545567899999999 8
Q ss_pred CcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc----------cee
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------NRF 928 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~----------~~~ 928 (1101)
+.+|..++-|+..++|......-.....--++.|...+|+|+|++|..+.. +.-++|.+.-..+.. ..+
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 999999999999999965433222333334568999999999988765443 223445433211100 000
Q ss_pred ------eecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC---------eEEEEEcCCceeeeeccCC-CCCCCeeEEEEcC
Q 001318 929 ------LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPR-ESSAPITHATFSC 992 (1101)
Q Consensus 929 ------~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~---------~v~vwd~~~~~~~~~~~~~-~h~~~i~~l~~sp 992 (1101)
..+..+...-.+++.+++|.|.|.+||+...+ .|.+||....-.+...... -.......++|+|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 01111211122577999999999999995332 3556776554333222110 0022355667766
Q ss_pred ---CCCEEEEEEcCCeEEEEEcC
Q 001318 993 ---DSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 993 ---dg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+|.+|..+=..|.+.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 67777777777888777754
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=130.81 Aligned_cols=256 Identities=16% Similarity=0.179 Sum_probs=165.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 422 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 422 (1101)
-+..+..++|++.=- -+|++..|..|+|||-....... +-......|+|++|-| .++-|
T Consensus 97 s~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCccee
Confidence 345678899999544 37899999999999976522211 1122345899999999 55667
Q ss_pred EEEEcCCeEEEEEccCCcee-----------eeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCcEEEEeCCCCceEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEV-----------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 490 (1101)
++|+..| |.||..+.--.. .+...-.|| .+|++|.|.+||. .+++++ .|..|.|||..+|..+.
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 7777766 999976531111 111223455 6899999999999 677777 56789999999998876
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc-cCceeEEEE
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQF 569 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-~~~~~~~~~ 569 (1101)
-..-..+.+.-+.|+ +|+++|+++.-|+..++|...............+.|...+|+|+|+.++.... ...+..+.|
T Consensus 233 L~~~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred ccccCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 553345667778885 56689999999999999965544333333444558999999999986554433 334455555
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 570 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 570 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
......+. .++.....-+-|+..-. ...+ .--.+...+++|.|.|.+|++....+.
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 44333222 22322333333332111 1111 001235788999999999998765443
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=7.4e-14 Score=143.65 Aligned_cols=281 Identities=12% Similarity=0.153 Sum_probs=212.1
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..-..+.++.+|+.++.++..|.+..+|+.+ +.+.... .-...|..+.|-.+.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~Ei----~v~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFEI----NVMETVRDVTFLHNEQ 183 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeeee----ehhhhhhhhhhhcchH
Confidence 4557889999999999999999999988743 2222211 1356688899999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
++|++....++|||- .|..++.++.| ..|..+.|-| .--+|++++..|.++--|+.+|+++..+..-.+.+..++-+
T Consensus 184 ~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 999999999999995 46777777644 4599999999 78899999999999999999999999998888999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeecc
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 977 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~ 977 (1101)
|-+-.+-+|...|+|.+|.....+. +...-.|. ++|.++++.++|.|+|+ |.|..++|||+.+...+.++.
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 9999999999999999999877443 22222333 48999999999999999 799999999999988776655
Q ss_pred CCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE-cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 978 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 978 ~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. ..+...++||..| |++.+....|.||. ...+...+... |+.+. ..+.|. .+.|.|- .+.|-.|..-
T Consensus 333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~p---Ym~H~-~~~~V~--~l~FcP~-EDvLGIGH~~ 400 (545)
T KOG1272|consen 333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETP---YMNHR-CGGPVE--DLRFCPY-EDVLGIGHAG 400 (545)
T ss_pred c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcc---hhhhc-cCcccc--cceeccH-HHeeeccccC
Confidence 3 3467788888655 34445566899994 33333222222 22222 122355 8899984 4677777766
Q ss_pred CcEEEEeccCCC
Q 001318 1057 GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 g~v~vW~~~~~~ 1068 (1101)
|--.+.-.-.|+
T Consensus 401 G~tsilVPGsGe 412 (545)
T KOG1272|consen 401 GITSILVPGSGE 412 (545)
T ss_pred CceeEeccCCCC
Confidence 655555555555
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.6e-12 Score=137.44 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=175.9
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC--CCCeEEEEE
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIW 415 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~ 415 (1101)
+++-+++...-+.+..||||+|++|||...-.|++||+..-.... .-| ...|.-.-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEe
Confidence 445667889999999999999999999999999999997654432 222 234555555
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
|-|-..++.-..|.+|.+-..-. .-.. ..+ ...-..++++.-.-. |..++....|+-.+++.|..+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~--~RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee--eec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 66666666667777776543221 1110 001 112234455444433 344444567999999999999999888
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
.+.++++.+++- ..+|++|+.+|.|-+||.+.......+..... |.+... +.....++.+.|+.+|-.
T Consensus 175 ~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg---------~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 175 SGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPG---------GDAAPSVTALKFRDDGLH 242 (703)
T ss_pred cccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccc-cCCCcc---------ccccCcceEEEecCCcee
Confidence 889999887543 35888888999999999998666554443222 111111 111225667777777778
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC--CCEEEEEeCCCcEEEEEecCc
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++|..+|.+.|||+++.+++..-. |....+|..+.|.+. ++.+++. +...++|||-.+|
T Consensus 243 ~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 9999999999999999998877655 455567888999774 4455544 4578999998887
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=142.31 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=117.0
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---------eeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
+..|+|+.|-|-+..+++++-.+|.++++|.+-...... ..|.+-.........+..-..--.+.|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888888888999999997632110000 00111000000000111112222458999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 495 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 495 (1101)
||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..-+||
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecccc
Confidence 9999999999999999999999977655 2334457899999999999 8999999999999999999999999999
Q ss_pred ccCeEEEeee
Q 001318 496 EAPVYSVCPH 505 (1101)
Q Consensus 496 ~~~v~~v~~~ 505 (1101)
...|..|+|.
T Consensus 374 kSWVs~VaFD 383 (636)
T KOG2394|consen 374 KSWVSVVAFD 383 (636)
T ss_pred ccceeeEeec
Confidence 9999999986
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=6.7e-14 Score=144.00 Aligned_cols=195 Identities=12% Similarity=0.225 Sum_probs=152.4
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
....|..+.|-|.--+|++++ .|.++--|+.+|+.+..+....+.+..++-+| -+..+-+|...|+|.+|.-.+.+.+
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchH
Confidence 356688899999888888888 69999999999999999998889999999999 7889999999999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeE
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 962 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v 962 (1101)
..+-.|.++|.+|++.++|+++||+|.|..++|||+..... +.....- .....++||.-|- ||.+....|
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q----l~t~~tp-----~~a~~ls~Sqkgl-LA~~~G~~v 356 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ----LHTYRTP-----HPASNLSLSQKGL-LALSYGDHV 356 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc----cceeecC-----CCccccccccccc-eeeecCCee
Confidence 99999999999999999999999999999999999988442 1111111 2457788888774 566777789
Q ss_pred EEEE-cCCc--eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 963 AIFE-TTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 963 ~vwd-~~~~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
.||. .-.+ .+-.-+..+.-.+.|..+.|.|-...|-.|..-|.-.+.
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 9994 3221 111111111225689999999977777766655544443
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=6e-11 Score=128.34 Aligned_cols=480 Identities=12% Similarity=0.125 Sum_probs=276.7
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCce------------eeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
......|++|+....|+|+|+.||.++|-.+.+... +.-..++.||...|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 455789999999999999999999999998765321 111245789999999999998887 688999
Q ss_pred CCCcEEEEeCCCCceEEEe--cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 474 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
.+|.|.||-+-.|.-...+ ......|.+++| ..+|..+.....||.|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGav----------------------------- 139 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAV----------------------------- 139 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCE-----------------------------
Confidence 9999999998887654332 224455777777 4555667666666655
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
++|+-||. +||.-+-.- . ....+.|++|.+.++.+-.+|.+.+
T Consensus 140 -------------------------IVGsvdGN-RIwgKeLkg-------~----~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 140 -------------------------IVGSVDGN-RIWGKELKG-------Q----LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred -------------------------EEEeeccc-eecchhcch-------h----eccceeecccHHHHHhhhcCCcEEE
Confidence 33444443 556432110 0 1234778888877777777788888
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCC-ccccccCccceeeccCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESN 710 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d 710 (1101)
+|............. .-.+.. .|+..+ .+ +....-+.+ .....|+...++++...
T Consensus 183 ydnqgnF~~Kl~~~c-~Vn~tg-------~~s~~~-------------~k---ia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDC-EVNGTG-------IFSNFP-------------TK---IAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ecccccHHHhhhhce-EEeeee-------eecCCC-------------cc---ccceeeccCccccCCCCCCEEEEEEcC
Confidence 876544221110000 000000 000000 00 011111122 23345688889999999
Q ss_pred CcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCC
Q 001318 711 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790 (1101)
Q Consensus 711 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~ 790 (1101)
|.+.+..-.+...+.... ....|..+.|+++|..|++++.+...-- ...+..++++.+-
T Consensus 239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~-------------~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADE-------------PTDSNKVHFYSPY 297 (1189)
T ss_pred ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccC-------------ccccceEEEeccc
Confidence 998887766544433322 2367889999999999999887632100 0000011122211
Q ss_pred CccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe
Q 001318 791 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 791 ~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
|..+.. ++. ....|++++|-..|-.+|.+-|+.|++=+++..-.-..+. . .+.|--..... -.-.
T Consensus 298 -G~i~gt-lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e---~---TvVy~y~~~e~-----p~y~ 362 (1189)
T KOG2041|consen 298 -GHIVGT-LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE---E---TVVYVYQKEEL-----PQYG 362 (1189)
T ss_pred -hhheEE-Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee---e---EEEEEEccCCC-----cceE
Confidence 111111 111 4678999999999999999999999988876422111111 1 11111100000 1224
Q ss_pred EEEEEeecceE-eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc-ceeeecCCCCCCCC--CCCeEEE
Q 001318 871 IQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTA--QSDTRVQ 946 (1101)
Q Consensus 871 v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~--~~v~~~~ 946 (1101)
|.+||..+.+. ++... | ..+++|+.+.-.|++-..|+.+.-++.-...... ...+...-|..... ..|.-..
T Consensus 363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~F 438 (1189)
T KOG2041|consen 363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKF 438 (1189)
T ss_pred EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeE
Confidence 78899887643 23222 2 4567888777778887788877666321111000 00011111111000 1122222
Q ss_pred EcCCCcEEEEEeCCeEEEEEcCCceeeee-------------------------cc-----CCCCCCCeeEEEEcCCCCE
Q 001318 947 FHQDQIHFLVVHETQLAIFETTKLECVKQ-------------------------WV-----PRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 947 ~s~dg~~la~~~d~~v~vwd~~~~~~~~~-------------------------~~-----~~~h~~~i~~l~~spdg~~ 996 (1101)
..-+|.++++++...+.+|.....+.... +. ..|..++|-+++.| .++
T Consensus 439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~ 516 (1189)
T KOG2041|consen 439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKF 516 (1189)
T ss_pred EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceE
Confidence 33466777777777888887533221100 00 11335677777775 678
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecC
Q 001318 997 VYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
|+.+-..|.|.-|.+.++-+..+..
T Consensus 517 l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 517 LMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred EEEEeccCceEEEEecceeeeeccc
Confidence 8889999999999999988776544
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1e-12 Score=137.78 Aligned_cols=216 Identities=14% Similarity=0.192 Sum_probs=149.7
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc-eEEeeecCceEEeeeccccc--cCCC
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTE--RNSS 775 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~--~~~~ 775 (1101)
+++-.++.+-..|.+.+.+....... + .+..........++++.|-|.+. .++++-.+|.+++||..... ..+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~s-k--lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVS-K--LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHH-H--hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 45556667777777777765541111 1 11111122457899999988655 45566678999999763221 1111
Q ss_pred Cceeeee---cCccccCCCc-cccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE
Q 001318 776 GKATASV---APQLWQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT 850 (1101)
Q Consensus 776 ~~~~~~~---~~~lw~~~~g-~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 850 (1101)
...+... .+..|--... ..+.. .. .-...|...+|+|||++||+.+ ||.+||||..+.+++..++.--+...
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~-w~--~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL 336 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVAR-WH--IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL 336 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccce-eE--eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence 1111110 1111111111 01110 00 1345788999999999999999 99999999999888888777778899
Q ss_pred EEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcC-------------------------------
Q 001318 851 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------------------------------- 899 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------------------------------- 899 (1101)
|++||| ||+||++|++|--|.||.+..+++++.-++|.+.|..|+|.|
T Consensus 337 CvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~ 415 (636)
T KOG2394|consen 337 CVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG 415 (636)
T ss_pred EEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence 999999 999999999999999999999999999999999999999972
Q ss_pred C----C-------------CEEEEEeCCCceEEEeCCCc
Q 001318 900 A----L-------------NVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 900 d----g-------------~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+ + -.+.++|.|-.+++||+...
T Consensus 416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 0 1 25778899999999999764
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=3.2e-10 Score=125.22 Aligned_cols=210 Identities=16% Similarity=0.198 Sum_probs=134.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCC-CceeeE---e----------cCCCCCeEEEEEecCCCcEEEEEe-ccC
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDS 869 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~lasg~-~dg 869 (1101)
....++++|++++|+++. +|.|.++++.. +..... + .......-++.|+| +++++++.+ ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 345677777888777776 67788888765 332221 1 11234578899999 888777764 345
Q ss_pred eEEEEEeecce--Ee--eeec-CcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCC--CcccccceeeecCCCCCCCCCC
Q 001318 870 SIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 870 ~v~vwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
.|++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. ++.......+............
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999997654 32 2222 2234467899999999886655 57789999988 4433333333333222211125
Q ss_pred CeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cce--eeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEc--C
Q 001318 942 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--A 1012 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~--~ 1012 (1101)
...++++|||++|.++ ..+.|.+|++. +++ .+..+.. .....+.++++|||++|+++. .++.|.+|++ +
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 6889999999999985 56789999993 233 3333332 134589999999999998887 5668999876 5
Q ss_pred Cceeeee
Q 001318 1013 NLKLRCR 1019 (1101)
Q Consensus 1013 ~~~~~~~ 1019 (1101)
+|.+...
T Consensus 325 tG~l~~~ 331 (345)
T PF10282_consen 325 TGKLTPV 331 (345)
T ss_dssp TTEEEEE
T ss_pred CCcEEEe
Confidence 7776543
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.8e-11 Score=129.07 Aligned_cols=547 Identities=11% Similarity=0.101 Sum_probs=305.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
......|++|+....| +|+|+.||.++|-.+.+...-.. .-.+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4567889999999886 99999999999999876533211 001111112222346899999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v 502 (1101)
+...+|.|.||-+-.|.-...+ .-....+.|.+++|..||. .+.....||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999998887654322 1223556899999999999 5777777888766554432211 223321 12245
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc-eeE-EEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.|+ +|...++.+-..|.+.++|....-.. ..+... |+. -.++.-+.+ +.++....-...-..|+...++++.
T Consensus 163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence 664 44467777777899999987542111 111111 111 112222221 1111111111223456778899999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
..|.+.+-.-.+......+... ..+..+.|+++|..|++++.+..-.- +..+. .+.
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~n--~v~------------------ 292 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDSN--KVH------------------ 292 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-ccccc--eEE------------------
Confidence 9999888765544333333211 35778999999999999876532100 00000 000
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
-+++.+ ....++.. ....
T Consensus 293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~ 310 (1189)
T KOG2041|consen 293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC 310 (1189)
T ss_pred Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence 000000 00001111 2345
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeecccc----------ccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
|++++|-..|-.++.+ -|+.|.+=+++.. .+-..+.......+.+||..+...... .-....+
T Consensus 311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~ 383 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN 383 (1189)
T ss_pred eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence 5666665555433322 2334444333211 000111222222455777766553322 1223456
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEC-CCCceeeEec-----C--CCCCeEEE--EEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 811 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFM-----P--PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd~-~~~~~~~~~~-----~--~~~~i~~l--~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+++..+--.|+.-. +|.|.-++. ++...+..+. | -+...+.+ .|-.-++.+++.++.+ .+.+|.....
T Consensus 384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~p 462 (1189)
T KOG2041|consen 384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLP 462 (1189)
T ss_pred hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEecc
Confidence 66665544455444 565554422 2222111110 0 01111111 1222156677777765 6788876321
Q ss_pred e--------------------------------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccce
Q 001318 880 E--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 927 (1101)
Q Consensus 880 ~--------------------------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~ 927 (1101)
+ ...++.|..++|.+++.| .++|..+-..|.|.-+.+...-....
T Consensus 463 K~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~- 539 (1189)
T KOG2041|consen 463 KFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS- 539 (1189)
T ss_pred chhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec-
Confidence 1 013345566788888886 57888888999999999887432111
Q ss_pred eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC---CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 928 FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 928 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~---~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
. +....+.++.+.-+...+|+ -.-|.+.+.|+. ++.++..+.. .....|+.+.|..|+..|++-.+-
T Consensus 540 ----y----~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 ----Y----PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred ----c----ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhhh
Confidence 1 11236788999999888888 466788888775 3444443321 226689999999888877766555
Q ss_pred CeEEEEEcC
Q 001318 1004 ATVCVFSAA 1012 (1101)
Q Consensus 1004 g~v~vwd~~ 1012 (1101)
..++|++-.
T Consensus 611 trmyifrgn 619 (1189)
T KOG2041|consen 611 TRMYIFRGN 619 (1189)
T ss_pred ceEEEecCc
Confidence 567777643
No 231
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.46 E-value=2.9e-08 Score=121.20 Aligned_cols=537 Identities=12% Similarity=0.143 Sum_probs=289.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEE----eCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
..+.|.++.|-++... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999985 7778888999999 655554432 23346699999999999
Q ss_pred CeEEEEEcCCeEEEEEcc----C-------------------Cceeeee----------------------eeeccccCC
Q 001318 420 SLFGVAYSRHIVQIYSYH----G-------------------GDEVRQH----------------------LEIDAHVGG 454 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~----~-------------------~~~~~~~----------------------~~l~~h~~~ 454 (1101)
..||....++++.+.+-. . |+.-.++ ..+. +.+.
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 999999999998876421 0 0000000 0111 3335
Q ss_pred eeEEEEcCCCCeEEEEEecC------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec---CCcEEEE
Q 001318 455 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 525 (1101)
Q Consensus 455 V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---dg~i~~w 525 (1101)
-..|+|-.||. ++++.+. -..++||+ +.|....+-+.-.+--.+++| .|.|++|++.-. ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSW--RPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccC--CCCCCEEEEEEEcCCCcEEEEE
Confidence 56789999999 6666553 25799999 668766655544444455677 455678877754 3456666
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEcCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADG 603 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~ 603 (1101)
.-+.. ....|... +.++ ...+..+.|++++..|+..-.|. |.+|-..+... .+.+....
T Consensus 287 ErNGL-rhgeF~l~--------~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGL-RHGEFTLR--------FDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCc-EeeeEecC--------CCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 43321 11111111 1111 12344555666666777766554 99999877653 22333222
Q ss_pred CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 604 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 604 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
. ..+..+.|+| +...|.+.+.+|.+..++..-... .+..
T Consensus 348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~-----~s~~---------------------------------- 387 (928)
T PF04762_consen 348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS-----RSPG---------------------------------- 387 (928)
T ss_pred C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE-----ecCC----------------------------------
Confidence 2 2345599999 566788888878887765432100 0000
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
..++..-.+..-+..++.+-.+.....+..+....+. -...|..++|++++..+++...||.+
T Consensus 388 --------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 388 --------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred --------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 0001111111222234555555443333333222211 34689999999999989999999999
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCc-
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 837 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~- 837 (1101)
.+|.+.............. .......... .........+..++|..+...++... + ..+.++++....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 9998654322110000000 0000000000 00001345678889988887777765 3 468888874332
Q ss_pred --eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE-eeeecCcccCeeEEEEcCCCC---EEEEEeCCC
Q 001318 838 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 911 (1101)
Q Consensus 838 --~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~---~l~s~s~D~ 911 (1101)
.......-.+.+..+...+ +...++.-..+|.+..++...... +..+..- ..-..+....+.. .++.-+..+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence 2233333344555555555 444566777899998766554321 1223221 1122233333322 444444444
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC-ceeeeeccCCC----CCCCe
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI 985 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~-~~~~~~~~~~~----h~~~i 985 (1101)
.+.+ .. . .+. ..+++.+++ +.+|+. .....++..++.. ........ .. +...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 4432 11 0 111 245666663 444444 5667788888871 11111110 01 11122
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+.+ .-|..|+++-...+=.|.-+.-|.+
T Consensus 661 R~V---ERGsriVt~vp~~~~vVLQmPRGNL 688 (928)
T PF04762_consen 661 RRV---ERGSRIVTAVPSDTSVVLQMPRGNL 688 (928)
T ss_pred ccC---ccCCEEEEEeCCCceEEEEcCCCch
Confidence 332 3577777776554444556665554
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.4e-11 Score=139.91 Aligned_cols=221 Identities=9% Similarity=0.015 Sum_probs=139.2
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
.+..+...+.+.+|||||+.|+.+... +..|.+||+.+++... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 344567789999999999985544322 3579999998876433 222233455789999
Q ss_pred CCCeEEEE-EcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCc--EEEEeCCCCceEEE
Q 001318 418 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI 491 (1101)
Q Consensus 418 dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~ 491 (1101)
||++|+.. +.+| .|.+||+++++..+ +..+...+...+|+|||+. |+..+ .++. |+++|+.+++. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999865 3344 58999999876433 4445567889999999995 44444 3444 55557666654 33
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+..+.......+| +++|++++..+.+ ..|.+||+.++... .+... ... ....
T Consensus 326 lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~---------------------~~p~ 380 (429)
T PRK03629 326 ITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLD---------------------ETPS 380 (429)
T ss_pred eecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCC---------------------CCce
Confidence 3333334445666 4666777766543 35778888765422 22111 011 1234
Q ss_pred EcCCCCEEEEEeCCCc---EEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 569 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
|+|||+.++.++.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 6667777888776654 677787 455556665433 3577788887
No 233
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=2.9e-09 Score=110.48 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=134.6
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-eEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
+|.+++..+.|+..+.+...+-.++. ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 78899999999999988776554433 4677799888888 777899999999 99999998776 4555666788999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC----CeEEEEEcCC
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 969 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d----~~v~vwd~~~ 969 (1101)
+..++||++++.+-....+.+.|++++... .+...+ .+-|+.+.|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 999999999999988888999999997632 222111 1478999999999999985 33 4799999999
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
++....-...+ .=.+-+|.|||++|.--+
T Consensus 479 ~Kiy~vTT~ta---~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTA---YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCcc---cccCcccCCCCcEEEEEe
Confidence 98876655433 335668999999887554
No 234
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=6.8e-08 Score=118.02 Aligned_cols=471 Identities=12% Similarity=0.132 Sum_probs=258.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEE----EccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +.. ...-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~---VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEI---VGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEE---EEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999999 555433 221 223467899999999999 5555555677766
Q ss_pred EeCCCCceE------------------------EEecC------------------------cccCeEEEeeeecCCccE
Q 001318 481 WDATNGAKQ------------------------YIFEG------------------------HEAPVYSVCPHHKENIQF 512 (1101)
Q Consensus 481 wd~~~~~~~------------------------~~~~~------------------------h~~~v~~v~~~~~~~~~~ 512 (1101)
-+ ++-..+ ..|+| +...-..++| .+||.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~y 223 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEY 223 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcE
Confidence 53 211111 11211 1111223444 788888
Q ss_pred EEEEec---C---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC---CC
Q 001318 513 IFSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DF 583 (1101)
Q Consensus 513 l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg 583 (1101)
++..+. . ..+|+|+-+ +.....-+...+ --..++|.|.|+++++.-. ..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g---------------------Le~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG---------------------LEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC---------------------ccCCccCCCCCCEEEEEEEcCCCc
Confidence 888775 2 468888654 111111111111 1234667777777777543 45
Q ss_pred cEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 584 SIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
.|.+|.- +|-.-..|... .....|..+.|++|+..||+...|. |++|...+-.-.++.--.
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~--------------- 344 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR--------------- 344 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE---------------
Confidence 6777774 44333333322 2334689999999999999988655 999987765211111000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
| .....+
T Consensus 345 ~-------------------------------------------------------------------------~~~~~~ 351 (928)
T PF04762_consen 345 F-------------------------------------------------------------------------SSSESV 351 (928)
T ss_pred c-------------------------------------------------------------------------cCCCCC
Confidence 0 011122
Q ss_pred EEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCE
Q 001318 742 SRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 819 (1101)
Q Consensus 742 ~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 819 (1101)
..+.|+|... .|...+.+|.+..+++ .|+...+.. .+| |...
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~ 395 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDF------------------AWDVSRSPG------------------SSPNDNGT 395 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEE------------------EEEEEecCC------------------CCccCceE
Confidence 3366666433 3566666677766654 122211110 011 1223
Q ss_pred EEEEeCCeEEEEECCCCcee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE--------eeeec
Q 001318 820 VMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK 886 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--------~~~l~ 886 (1101)
+++..+.++.+-.++..... ..+. -...|.+++|++ ++..+|+-..||.|.+|....... ...+.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 473 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS 473 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence 34444556777776643321 2233 346799999999 676688899999999998543221 11111
Q ss_pred ----------CcccCeeEEEEcCCCCEEEEEeCC---CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 887 ----------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 887 ----------~h~~~V~~l~~s~dg~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.-...+..++|..+...++....+ ..+.++++...+.. .......... ..+..+...++...
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 548 (928)
T PF04762_consen 474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGS 548 (928)
T ss_pred cccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcE
Confidence 123457888898887777666554 56888887443211 1111111111 23444444555543
Q ss_pred EEE-EeCCeEEEEEcCCceeee-eccCCCCCCCeeEEEEcCCCC---EEEEEEcCCeEEEEEcCCceeeeecCCCcccCC
Q 001318 954 FLV-VHETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1028 (1101)
Q Consensus 954 la~-~~d~~v~vwd~~~~~~~~-~~~~~~h~~~i~~l~~spdg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1028 (1101)
++. ..+|.+..++........ .+. . ...-..++...+.. .++.=+..|.+++ +++.++.
T Consensus 549 ~~~q~~~G~v~~~~~~~~~~~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--------- 612 (928)
T PF04762_consen 549 LYIQTNDGKVFQLSSDGELSQIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--------- 612 (928)
T ss_pred EEEEECCCEEEEeecCCCccccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------
Confidence 444 678888866655433221 221 1 11222233333333 3444444555554 3444421
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1029 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1029 ~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
. +. +...+. .+|+.......+++.++.
T Consensus 613 ~-----~t--SF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 613 N-----CT--SFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred C-----Cc--eEEEEc---CEEEEEecCceEEEEECc
Confidence 1 33 444442 456555567889999998
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.2e-10 Score=121.89 Aligned_cols=112 Identities=20% Similarity=0.302 Sum_probs=92.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~ 877 (1101)
..++|.++.|+++++-++++. -.++.|||++ +..+..+ ..++-+++-|+| .|++|+.++- -|.+-|||+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 478999999999999888775 3789999986 4666555 367778999999 8999888774 4799999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------CCceEEEeCCCc
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 921 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~ 921 (1101)
+.+++..+..-.. +-+.|+|||++++|++. |+.++||++.+.
T Consensus 345 n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred chhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9999998876544 45799999999998875 678999999773
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.3e-11 Score=130.61 Aligned_cols=277 Identities=11% Similarity=0.164 Sum_probs=201.9
Q ss_pred CCCccccccCcccee-eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 691 MNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 691 ~~~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
....+..++|+++++ +|..--.|++||+.+... .+...-....|.-..++.|-..++....|..|.+...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEccccee-------eeeecccccceeEEEeccchhhheEeecCceeeehhh--
Confidence 355677889998876 555567899999986432 1111123445555666667666777777777765431
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeEecCCCCC
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~ 848 (1101)
-|.-....+ ...-..++++ +...++++|+...|+-++++.|+.+..|....+.
T Consensus 124 ---------------------~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 124 ---------------------YGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred ---------------------cCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccc
Confidence 222111111 1122344444 4555677777888999999999999999888899
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec------Cccc-----CeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~------~h~~-----~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++..++ -..+||+|+.+|.|..||..+.+.+.++. .|.+ .|+++.|+.||-.+++|..+|.|.|||
T Consensus 178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 99999999 88899999999999999998876665553 2433 399999999999999999999999999
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ 995 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~ 995 (1101)
+.+.+.. ...-... ..+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++.
T Consensus 257 LRa~~pl---~~kdh~~----e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sG 326 (703)
T KOG2321|consen 257 LRASKPL---LVKDHGY----ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSG 326 (703)
T ss_pred cccCCce---eecccCC----ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCc
Confidence 9985421 1111111 147888888765 5566667778899999999999887754 55799999999999
Q ss_pred EEEEEEcCCeEEEEEcCC
Q 001318 996 LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 996 ~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++++..++.+..|-+..
T Consensus 327 m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEEecCCCcceeEEccc
Confidence 999999998888887654
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-10 Score=132.64 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=134.8
Q ss_pred cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeeee
Q 001318 369 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 369 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~ 445 (1101)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++... .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l 238 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V 238 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c
Confidence 68888887654322 4456678999999999999997653 4579999999876432 2
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CCcE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 522 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~i 522 (1101)
..+ .+.+..++|+|||+. ++++.+.++ .|++||+.+++..... .+...+....|+ ++|+.|+..+. ++..
T Consensus 239 ~~~---~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wS--PDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 239 ASF---PRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWF--PDSQNLAYTSDQAGRP 311 (429)
T ss_pred cCC---CCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEEC--CCCCEEEEEeCCCCCc
Confidence 223 334557899999996 233334444 5999999888765443 344456667774 56677766665 3455
Q ss_pred EEE--ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeE
Q 001318 523 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLT 597 (1101)
Q Consensus 523 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~ 597 (1101)
.+| |+.++.. ..+....... ....|+|+|++++..+.+ ..|++||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~---------------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQN---------------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCc---------------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 4443322 2221111112 234556666667665432 45889999888644
Q ss_pred EEcCCCCCCCcCeEEEccCCCEEEEEeCCCc---EEEEEec
Q 001318 598 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS 635 (1101)
Q Consensus 598 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iw~~~ 635 (1101)
.+.... ......|+|||++|+..+.++. +.++++.
T Consensus 369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 333221 2346889999999999988765 5566653
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=1.8e-11 Score=124.06 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=79.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
...+++++...|+++++++|. -+.+..||++.+..... +.+..+.|+++..+| ..++||+++-|+.|||+|+++.++
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchh
Confidence 356688888889999999998 79999999999888776 888899999999999 889999999999999999999777
Q ss_pred eeeecCcccCeeEEEEcCC
Q 001318 882 KSKLKGHSKRITGLAFSHA 900 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~d 900 (1101)
+....- ...+++|-+.++
T Consensus 325 l~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 325 LHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred hhhhhh-hccccEEEecCC
Confidence 665442 334667766544
No 239
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.6e-10 Score=112.36 Aligned_cols=283 Identities=9% Similarity=0.083 Sum_probs=184.3
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC---ceEEeeeccccccCCCCceeeeecCcc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 786 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~l 786 (1101)
+..|.+|++.+.........+ .......+-++|+|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 567999999843322111111 2256778899999999999888765 55655554
Q ss_pred ccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCC-CceeeE--ecCCCCC----------eEE
Q 001318 787 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 851 (1101)
Q Consensus 787 w~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 851 (1101)
|..+|++...-... ....+.+.++++++|++++++. .|.|.++-+.+ |..... +-.|.+. +-.
T Consensus 72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33444422211100 1233448899999999999998 58999999965 433221 1123332 778
Q ss_pred EEEecCCCcEEEEEec-cCeEEEEEeecceEeeeec---CcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC--cccc
Q 001318 852 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ 924 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~--~~~~ 924 (1101)
..|.| ++++|++.+- --.|.+|++..|++...-. .-...-..|.|+|++++..... -+++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 88999 8988888753 2389999999776442211 1223457899999999987666 489999999988 3333
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
..+.+...............+.+++||++|.++. ...|.+|.+.. ++....-....+....+...|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 3333333333333345678899999999999973 44788887654 3322111112334557899999999999988
Q ss_pred EcCC-eEEEEEc--CCceeee
Q 001318 1001 FLDA-TVCVFSA--ANLKLRC 1018 (1101)
Q Consensus 1001 s~dg-~v~vwd~--~~~~~~~ 1018 (1101)
..++ .|.||.+ .+|++-.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 309 NQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred ccCCCcEEEEEEcCCCceEEe
Confidence 8654 5888866 4666543
No 240
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.2e-13 Score=150.14 Aligned_cols=215 Identities=17% Similarity=0.171 Sum_probs=148.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.|...-+|++||-+.++ |+.|+..|.|+++++.+|..... ..+|..+|+-+.-|.||..+
T Consensus 1099 d~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred ccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCccee
Confidence 37888999999999996 99999999999999999987653 78999999999999999998
Q ss_pred EEEEcC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cC---cc
Q 001318 423 GVAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG---HE 496 (1101)
Q Consensus 423 as~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---h~ 496 (1101)
++.+.- ....+|++.+- ....+++. .-.++.|+....+ -+.|.....+.|||++++..+.++ .+ ..
T Consensus 1159 Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred eeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence 876543 35789998762 22222332 3457889877553 333444457889999999887763 22 12
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..-++..|+|. ..+++ .||. +||.+..+.+..|..-.. . ..=.|+|.|+.+
T Consensus 1231 y~~n~a~FsP~--D~LIl---ndGv--LWDvR~~~aIh~FD~ft~-------~---------------~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1231 YSNNLAHFSPC--DTLIL---NDGV--LWDVRIPEAIHRFDQFTD-------Y---------------GGGGFHPSGNEV 1281 (1516)
T ss_pred hhccccccCCC--cceEe---eCce--eeeeccHHHHhhhhhhee-------c---------------ccccccCCCceE
Confidence 22244556443 34444 2554 499998766655432211 0 011377888888
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
+.-+ .|||+++.+.++....-.. ..+.|+..|..++..
T Consensus 1282 IINS-----EIwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1282 IINS-----EIWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Eeec-----hhhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 8866 4899999988877764432 458888888766643
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.4e-11 Score=122.55 Aligned_cols=325 Identities=14% Similarity=0.247 Sum_probs=201.8
Q ss_pred CCCEEEEEeCCCcEEEEEC-CCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccc
Q 001318 572 TKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 650 (1101)
Q Consensus 572 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 650 (1101)
..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++.+.|++|-.+|++.-+.+..........+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r----- 108 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK----- 108 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-----
Confidence 3345999999999999954 4455444443 23345688999999999999999999998887654322111110
Q ss_pred ccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccc
Q 001318 651 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 730 (1101)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 730 (1101)
.|
T Consensus 109 ----------------------------------------------------------------~~-------------- 110 (404)
T KOG1409|consen 109 ----------------------------------------------------------------DY-------------- 110 (404)
T ss_pred ----------------------------------------------------------------hh--------------
Confidence 00
Q ss_pred ccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 731 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 731 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
..|...+..+.|+.....+++.+.|..+. |-... .|..+.... .....++
T Consensus 111 ----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~----~~~~~t~ 160 (404)
T KOG1409|consen 111 ----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN----FETPASA 160 (404)
T ss_pred ----hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE----eeccCCC
Confidence 22778889999998888899998886654 33211 111110000 0011111
Q ss_pred EEEecCCCEEEEEe-CCeEEEEE--CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-Eeeeec
Q 001318 811 FALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLK 886 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~ 886 (1101)
+.+.-. +..+|. .|.|..-. ......+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+.-.+ ....+.
T Consensus 161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 161 LQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred CceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec
Confidence 111111 333444 45544433 345677888999999999999999 88999999999999999997543 346678
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee-------------------------cCCCCCCCCC-
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTAQ- 940 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~~~~- 940 (1101)
+|.+.|..+...+--+.|++++.||.|.+|+++........-+. +...|-...+
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~ 317 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGK 317 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 99999999999888899999999999999998764322211000 0000000000
Q ss_pred CCeEEEEcCCCcEEEEEeCCeEEEEEcCCce-----eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 941 SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~-----~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
.+...+-+.-..+...+..-.+|+-|.-... ....-.++.-...|+.+.+-.+-.+|+|++.|..|+|||+..
T Consensus 318 avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 318 AVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1111111111222222444455555432111 100111112245799999998889999999999999999864
No 242
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=2.6e-10 Score=112.74 Aligned_cols=238 Identities=14% Similarity=0.165 Sum_probs=156.2
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE-E
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A 425 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~ 425 (1101)
...+++|+.|.. -+++|. |.-.+||+.+.-+...++.+ +.+.+.-+..---.++||- |
T Consensus 7 ~~lsvs~NQD~S-cFava~-~~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG 65 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVAT-DTGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG 65 (346)
T ss_pred ceeEEEEccCCc-eEEEEe-cCceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence 345599999988 366655 45679999876444322111 1111111111112345443 3
Q ss_pred EcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEEecCcc--
Q 001318 426 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE-- 496 (1101)
Q Consensus 426 ~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~-- 496 (1101)
|.+ ..|.|||=...+++. ++. ...+|.++.++++- ++.. ..+.|+||... +.+.++.+....
T Consensus 66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCC
Confidence 332 469999955554444 232 46889999998763 3333 35789999987 566666664322
Q ss_pred cCeEEEeeeecCCccEEEEEe-cCCcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 497 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
....+++ +..+..+|+.-+ .-|.|++-|+..... ...+..|... |.+++.+-+|
T Consensus 137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~---------------------Iacv~Ln~~G 193 (346)
T KOG2111|consen 137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD---------------------IACVALNLQG 193 (346)
T ss_pred CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc---------------------eeEEEEcCCc
Confidence 3344444 344434555444 358899998876444 3455555554 4455555555
Q ss_pred CEEEEEeCCCc-EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 574 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 574 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..++++|..|+ |||||..+|+.+..+........+.+++|||++.+|+++++.|+++|+.+...
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 68999999888 79999999999999976555667999999999999999999999999998764
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=4.3e-10 Score=124.24 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=163.2
Q ss_pred CCCeeEEEEecCCCEEEEEeC-----CeEEEEECCCC--c--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEE
Q 001318 805 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 874 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sd-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 874 (1101)
......++++|++++|.+... +.|..|++... + .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445677899999999999862 57888888753 2 2333332345567899999 788887776 58999999
Q ss_pred Eeec-ceEeee---ec----------CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcc--cccceeeecCCCCCC
Q 001318 875 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 937 (1101)
Q Consensus 875 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 937 (1101)
++.. +.+... +. .-.....++.|+|||++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433322 11 11234678999999998887643 3469999997754 222223344444
Q ss_pred CCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cce--eeeeccC--CCC--CCCeeEEEEcCCCCEEEEEE-cCCeE
Q 001318 938 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVP--RES--SAPITHATFSCDSQLVYACF-LDATV 1006 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~--~~~~~~~--~~h--~~~i~~l~~spdg~~l~s~s-~dg~v 1006 (1101)
...+.++|+|+|+++.+. .++.|.+|++. ++. .+..+.. .+. ......|+++|||++|+++. .+.+|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999884 56789999988 443 2222221 111 23688999999999987766 56689
Q ss_pred EEEEcC--Cceee--eecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-cCCcEEEEeccCCCcccc
Q 001318 1007 CVFSAA--NLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1007 ~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~-~dg~v~vW~~~~~~~~~~ 1072 (1101)
.+|+++ +|++. ..+. ..| ..|..++++| +|++|+++. .++.|.+|++....+.|.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~-----~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVP-----TGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEECTTTTTEEEEEEEE-----ESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCceEEEEEEe-----CCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999993 34432 2222 112 4466899999 677776665 667999999865444443
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7.6e-10 Score=117.86 Aligned_cols=198 Identities=9% Similarity=0.167 Sum_probs=133.5
Q ss_pred CCCCeeEEEEecCCC--EEEEE---eC---CeEEEEECCCCceeeEec--C-CCCCeEEEEEecCCCcEEEEEec-----
Q 001318 804 PEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTMATFM--P-PPPAATFLAFHPQDNNIIAIGMD----- 867 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~--~la~~---sd---g~i~vwd~~~~~~~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~----- 867 (1101)
|...|..+.+||.+. .+|+- .+ +.|+||.......-..+. . ....-..+.|.+.+..+|+.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 667788899998744 44442 12 469999876322211111 0 11223456677634445544432
Q ss_pred ------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE--eCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 868 ------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS--GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 868 ------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
..+++++++...++.-.+. -.++|.++.|+++|+.++.+ -.=.++.|+|++. ........|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~eg----- 312 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEG----- 312 (566)
T ss_pred CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCC-----
Confidence 2378888877444444443 47899999999999776543 3456799999887 233444444
Q ss_pred CCCeEEEEcCCCcEEEE-Ee---CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CCeEEEE
Q 001318 940 QSDTRVQFHQDQIHFLV-VH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVF 1009 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~-~~---d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg~v~vw 1009 (1101)
+=..+.|+|.|++++. |. .|.+.|||+.+.+++..+. ...-+-+.|+|||++++|++. |..++||
T Consensus 313 -pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 313 -PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred -CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 3368999999999988 42 4789999999999888876 345667899999999998884 7889999
Q ss_pred EcCCceeee
Q 001318 1010 SAANLKLRC 1018 (1101)
Q Consensus 1010 d~~~~~~~~ 1018 (1101)
++. |.++.
T Consensus 388 hyt-G~~l~ 395 (566)
T KOG2315|consen 388 HYT-GSLLH 395 (566)
T ss_pred Eec-Cceee
Confidence 975 55544
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.3e-11 Score=136.27 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=133.6
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---CeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
..|.++|.. +...+.+..+...+.+.+|+| |++.|+..+.+ ..|++||+.+++.. .+....+.+.+.+|||||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 468888874 455555656777899999999 88888877643 36999999888653 3333445567899999999
Q ss_pred EEE-EEeCCCceEEEeCC--CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEE--EcCCceeeee
Q 001318 903 VLV-SSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIF--ETTKLECVKQ 975 (1101)
Q Consensus 903 ~l~-s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vw--d~~~~~~~~~ 975 (1101)
.|+ +.+.++...||.++ ++.. ..... +. .......|+|||++++... ++...+| ++.++.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt~-~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-----RRLTQ-SS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-----EECCC-CC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 887 56778887777654 3321 11111 11 2346678999999988743 3445555 5555543322
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.. . .......+|||||++|+..+.++ .|++||+.+++... +. .+ .. .. ..+|+| |++.|+.
T Consensus 324 t~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------~~--~~-~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 324 TF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT------DT--TR-DE--SPSFAP-NGRYILY 387 (427)
T ss_pred ec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc------CC--CC-cc--CceECC-CCCEEEE
Confidence 21 1 22345679999999998777654 69999999887543 22 11 01 12 578999 6787777
Q ss_pred EecCC
Q 001318 1053 GLSDG 1057 (1101)
Q Consensus 1053 ~~~dg 1057 (1101)
.+.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 66554
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.5e-11 Score=137.68 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=138.5
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
....+..+...+.+.+|+|||++|+.+... +..|.+||+.+++... +..+.+...+.+
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~ 254 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS 254 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence 344455678889999999999974444322 3469999998876533 233344556889
Q ss_pred EecCCCeEEE-EEcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CCCc--EEEEeCCCCce
Q 001318 415 WSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAK 488 (1101)
Q Consensus 415 ~spdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~ 488 (1101)
|||||+.|+. .+.++ .|.+||+.+++... +..+.......+|+|||+. ++..+ .++. |+++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence 9999998864 45555 69999999876432 5556556678999999995 44433 4444 77777777664
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCC---cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
.. +..+.......+| +++|++|+..+.++ .|.+||+.+++.. .+.. .......
T Consensus 329 ~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p------------------- 384 (433)
T PRK04922 329 ER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESP------------------- 384 (433)
T ss_pred EE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCc-------------------
Confidence 33 2222233445666 45667777665433 6889998765433 2221 1112223
Q ss_pred EEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 566 VVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|+|++++..+. .+.|+++++.. .....+.... ..+...+|+|
T Consensus 385 --~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 385 --SFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred --eECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 45555556665543 34688888854 4444444322 2456677776
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.3e-10 Score=133.27 Aligned_cols=216 Identities=12% Similarity=0.073 Sum_probs=140.7
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 444 (1101)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~- 240 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL- 240 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence 47888888654332 25677889999999999999998764 4689999999886432
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCc--EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC-
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 520 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg- 520 (1101)
+..+.+.+...+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+ +||+.|+..+. +|
T Consensus 241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~ 313 (435)
T PRK05137 241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS 313 (435)
T ss_pred ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence 4456677889999999996 3456665555 77789887765 4455566556667774 56677776653 33
Q ss_pred -cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcee
Q 001318 521 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 596 (1101)
Q Consensus 521 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 596 (1101)
.|.+||+..+.. ..+......+. ...|+|+|+.++....+ ..|.+||+.++..
T Consensus 314 ~~Iy~~d~~g~~~-~~lt~~~~~~~---------------------~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNP-RRISFGGGRYS---------------------TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCe-EEeecCCCccc---------------------CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 577777654332 22221122222 34455566666665432 3688889865543
Q ss_pred EEEcCCCCCCCcCeEEEccCCCEEEEEeCC------CcEEEEEecCc
Q 001318 597 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 637 (1101)
Q Consensus 597 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iw~~~~~ 637 (1101)
..+.. .. .+....|+|||++|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~-~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTS-GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccC-CC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 33332 11 36678999999998876543 24666776544
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=1.1e-09 Score=116.91 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=129.6
Q ss_pred eEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEe--
Q 001318 809 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK-- 882 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~-- 882 (1101)
..++++|||+++++.. +..|.+.|+.+++.+.++.-.. ...-...+. +. +. +-+.||......+.+ ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 4577888888888765 5789999999999988876432 122222222 22 11 123344444433322 1111
Q ss_pred --eeecCcccCee-EEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC----CCCCCCCeEEEEcCCCcEE
Q 001318 883 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 883 --~~l~~h~~~V~-~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l 954 (1101)
..+.+-..++. .-.|++ ||+++..... |+|.+.|+................. ...++...-++++++|+.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111001110 014455 8888877666 9999999765443333333322211 1122445569999999998
Q ss_pred EEEe---C--------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 955 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 955 a~~~---d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.. . +.|.++|..+++.+..+.. ...+..++|||||+ +|++.+ .++.|.|+|..+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8832 1 5799999999999998875 45899999999999 777666 57889999999999998873
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=4.6e-11 Score=136.10 Aligned_cols=234 Identities=15% Similarity=0.133 Sum_probs=138.4
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
+|..+........+..+...+.+.+|||||+.|+++...+ ..|.+||+.+++... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 3333333333444556788999999999999744444333 359999999886543 222
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
..+.+.+.+|||||+.|+. .+.++...||.+ .++. .. .+..+...+....|+|||+. ++++...++...||.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3445678999999998875 567777666654 4443 22 35556666778899999995 233444456666665
Q ss_pred C--CCCceEEEecCcccCeEEEeeeecCCccEEEEEecCC---cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 483 A--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 483 ~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
+ .+++... +..+........| +++|++|+..+.++ .|.+||+.+++... +... .....
T Consensus 313 ~~~~~g~~~~-lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~------------ 375 (427)
T PRK02889 313 MPASGGAAQR-VTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDES------------ 375 (427)
T ss_pred EECCCCceEE-EecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccC------------
Confidence 4 4444322 2212222334556 56678888776554 68999987754332 2111 11223
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
..|+|+|+.|+.++.++ .+++.++ ++.....+....+ .+...+|+|
T Consensus 376 ---------p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 376 ---------PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred ---------ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 34555555666655332 3555566 4555555543322 456677776
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=5e-10 Score=117.60 Aligned_cols=362 Identities=14% Similarity=0.196 Sum_probs=224.6
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-------
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------- 475 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d------- 475 (1101)
+....-++..++|||.|.+|++....+ |.+|+-.....+. .+. | ..|..+.|||.++ +|++-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~~-~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RFR-H-PDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---eee-c-CCceecccCcccc--eeeeeccCCccChhh
Confidence 334566899999999999999887666 9999988766443 222 3 5799999999999 78876543
Q ss_pred --------CcEEEEeCCCCceEEEecCcccC--eE-EEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCce
Q 001318 476 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC 543 (1101)
Q Consensus 476 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v 543 (1101)
..+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 35999999999999999876655 44 35564433 444433 3456888986221111111 1113456
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
....++|.+.. .. .+-|.|. ..+.++++++|.+..+..+.+-....- .-..+.|.+.|++|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 66667776530 11 1122221 146788999999987766554432211 12357888888887754
Q ss_pred eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 703 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1101)
... +..+++...
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 321 111110000
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee--cCceEEeeeccccccCCCCceeee
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
.+..+.++++......... ...+.|...+|.|.++.+++.+ .+..+.++++..
T Consensus 253 -----gesnLyl~~~~e~~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------ 307 (561)
T COG5354 253 -----GESNLYLLRITERSIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------ 307 (561)
T ss_pred -----ccceEEEEeecccccceec--------cccccceeeeecccCCceeEEecccccceeeccccc------------
Confidence 0123344444321111110 1457899999999998877666 356677776532
Q ss_pred ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCceee-EecCCCCCeEEEEEec
Q 001318 782 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 856 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp 856 (1101)
. +.... ....=..+.|+|.+++++.++ | |.+.+||....-.+. .+.+ ...+-+.|+|
T Consensus 308 ----------N-l~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wsp 369 (561)
T COG5354 308 ----------N-LRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSP 369 (561)
T ss_pred ----------c-eEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccC
Confidence 1 11111 233345678999999999987 5 789999987654433 5543 3456678999
Q ss_pred CCCcEEEEEe------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC
Q 001318 857 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 911 (1101)
Q Consensus 857 ~d~~~lasg~------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~ 911 (1101)
|++++.+.. .|..|.|||+...... ..+.+.|-|.|++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 899888775 4778999998654321 466788888887777666554
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=3.7e-11 Score=119.40 Aligned_cols=155 Identities=12% Similarity=0.214 Sum_probs=108.8
Q ss_pred EEEEEecCCCcEEEEEec----------cCeEEEEEeec-ceEeeeecC-cccCeeEEEEcCCCCEEEEE--eCCCceEE
Q 001318 850 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 915 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~D~~v~i 915 (1101)
..+.|++ .|.+|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.++.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 13455565532 223333332 34579999999999987654 45779999
Q ss_pred EeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 916 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 916 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
||++.. ....... ..+..+.|||+|++++++. .|.|.+||+.+.+.+.... ...++.++||
T Consensus 88 yd~~~~-----~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK-----KIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCccc-----EeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 999731 1222221 2557899999999999942 4679999999999887764 3357999999
Q ss_pred CCCCEEEEEEc------CCeEEEEEcCCceeeeecC
Q 001318 992 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 992 pdg~~l~s~s~------dg~v~vwd~~~~~~~~~~~ 1021 (1101)
|||++|+++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999984 77776554
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=1e-10 Score=116.29 Aligned_cols=349 Identities=16% Similarity=0.248 Sum_probs=213.8
Q ss_pred cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-----eEEEecCcc------------cCeEEEeeeecCCccEEE
Q 001318 452 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 514 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~~~~l~ 514 (1101)
.+-|.++.|..+|. +|++|..+|.|.++.-.... ....++.|. ..|+.+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 46789999999999 89999999999999743222 223444443 347778888888888888
Q ss_pred EEecCCcEEEEecCCCCcee-----eecCCCCceeEEEEcc----------CCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 515 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 515 s~~~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
..+.|.+|++|.+....... ........++++.... ..++++...+.--+..+.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 89999999999887644332 1111222333332211 12255666666788899999999988886
Q ss_pred eCCCcEEEEECCCCc-ee--EEEcCCC---CCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 580 GDDFSIKFWDMDSVQ-LL--TSIDADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~-~~--~~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
. |=.|.+|+++--. .. ..++.+. -...|++..|+| ..++++-.++.|+|++-|++....+-..
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h--------- 252 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH--------- 252 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch---------
Confidence 5 6689999986432 11 2222111 112467888999 4567777788899999998754111100
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
-+++...
T Consensus 253 ------------------------------------------------------------sKlfEep------------- 259 (433)
T KOG1354|consen 253 ------------------------------------------------------------SKLFEEP------------- 259 (433)
T ss_pred ------------------------------------------------------------hhhhccc-------------
Confidence 0000000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
. .|..+-+ +. +--..|..+.
T Consensus 260 -e------------dp~~rsf---------------------------------------------fs--eiIsSISDvK 279 (433)
T KOG1354|consen 260 -E------------DPSSRSF---------------------------------------------FS--EIISSISDVK 279 (433)
T ss_pred -c------------CCcchhh---------------------------------------------HH--HHhhhhhceE
Confidence 0 0000000 00 0134577889
Q ss_pred EecCCCEEEEEeCCeEEEEEC-CCCceeeEecCCC------------CC---eEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 813 LSKNDSYVMSASGGKISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~-~~~~~~~~~~~~~------------~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
|+++|+|+++-+--+|++||+ ...+.+.+++-|. .. -..++|+. ++.++++|+....+++|++
T Consensus 280 Fs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 280 FSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred EccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecC
Confidence 999999999887789999999 4556666665553 12 24678998 8889999999999999997
Q ss_pred ecceEe-eeecCcccC--eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 877 RVDEVK-SKLKGHSKR--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 877 ~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
..|... .++...... ...+ ..-+.+.+++......+|-.. +... ..+...+|+|....
T Consensus 359 ~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf~-------kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 359 ARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDFR-------KKILHTAWHPKENS 419 (433)
T ss_pred CCCcceeecccccccCCccccc---ccceeeecCCCccccccccch---------hhhh-------hHHHhhccCCccce
Confidence 665422 222222221 1111 112334444444332222110 0000 14577899999999
Q ss_pred EEEEeCCeEEEE
Q 001318 954 FLVVHETQLAIF 965 (1101)
Q Consensus 954 la~~~d~~v~vw 965 (1101)
+|++.-+.+.+|
T Consensus 420 ia~aatnnlyif 431 (433)
T KOG1354|consen 420 IAVAATNNLYIF 431 (433)
T ss_pred eeeeecCceEEe
Confidence 999766667665
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.3e-10 Score=133.26 Aligned_cols=232 Identities=11% Similarity=0.047 Sum_probs=143.7
Q ss_pred CCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEec--CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 328 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
+|..+........+..|...+.+.+|||||++|+.+... +..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 333333334444555788899999999999975554432 4689999998886532 345
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec-CC--CcEE
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIK 479 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~-~d--~~i~ 479 (1101)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++..+ +..+.......+|+|||+. ++..+ .+ ..|+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667889999999998864 455554 7778988876433 5556667788999999995 44333 33 3688
Q ss_pred EEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 480 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+||+.+++.. .+..+.+.+....|+ ++|+.|+..+.+ ..|.+||+..... ..+.. ...+...
T Consensus 318 ~~d~~g~~~~-~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p---------- 382 (435)
T PRK05137 318 VMNADGSNPR-RISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGP---------- 382 (435)
T ss_pred EEECCCCCeE-EeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCC----------
Confidence 8897766543 343344455556664 566777766543 3577777654322 22211 1123333
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|||+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 383 -----------~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 383 -----------TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred -----------eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 455555566554332 3688888866544 3443221 355667776
No 254
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.2e-10 Score=133.21 Aligned_cols=215 Identities=13% Similarity=0.150 Sum_probs=137.5
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc---CCeEEEEEccCCceeee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~ 444 (1101)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654332 24566778999999999999998874 3479999999886432
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CCc
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 521 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~ 521 (1101)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ ++|+.|+.++. +|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3334455668899999996 344555554 599999988875 4455555555566774 56677776654 455
Q ss_pred --EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcee
Q 001318 522 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 596 (1101)
Q Consensus 522 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 596 (1101)
|.++|+.+++. ..+....... ...+|+|+|+.++..+.+ ..|++||+.+++..
T Consensus 316 ~~iy~~dl~~g~~-~~lt~~g~~~---------------------~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSA-ERLTFQGNYN---------------------ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCe-EEeecCCCCc---------------------cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 55555544332 1111111111 234566666677665433 26999999888755
Q ss_pred EEEcCCCCCCCcCeEEEccCCCEEEEEeCC---CcEEEEEecC
Q 001318 597 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 636 (1101)
Q Consensus 597 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iw~~~~ 636 (1101)
.+. +.. ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 221 24567999999988877653 3466666643
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=2.8e-09 Score=112.08 Aligned_cols=323 Identities=11% Similarity=0.128 Sum_probs=184.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC---------------cEEE
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN---------------GIKI 631 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~i 631 (1101)
++++|.|.+|++.. -..|.+|.-..+..+..+... .|..+.|+|.++||.+-+..+ .+.+
T Consensus 38 ~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~~----~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 38 VSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRHP----DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred eeecCcchheehhh-ccceEEccccchhheeeeecC----CceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 33444444555543 346889988877766666522 488899999999999876543 4899
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||+.+| .++..+......... -....++.+..+.+-. ...
T Consensus 113 wd~~sg-~iv~sf~~~~q~~~~--------------------------------------Wp~~k~s~~D~y~ARv-v~~ 152 (561)
T COG5354 113 WDIASG-MIVFSFNGISQPYLG--------------------------------------WPVLKFSIDDKYVARV-VGS 152 (561)
T ss_pred EeccCc-eeEeeccccCCcccc--------------------------------------cceeeeeecchhhhhh-ccC
Confidence 999988 666655443322000 0122333344444322 234
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+.++++...-.......+ ....|....++|.++ ...+..|.. +.
T Consensus 153 sl~i~e~t~n~~~~p~~~l------r~~gi~dFsisP~~n-------~~~la~~tP----------------------Ek 197 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNL------RPVGILDFSISPEGN-------HDELAYWTP----------------------EK 197 (561)
T ss_pred eEEEEecCCccccCchhhc------cccceeeEEecCCCC-------CceEEEEcc----------------------cc
Confidence 5677775322222222221 234566666666552 111222211 10
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-----
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----- 866 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----- 866 (1101)
+ +..+++++|.+..+..+.+-.-..-.-..+.|.+ .|++|..--
T Consensus 198 ~------------------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k 246 (561)
T COG5354 198 L------------------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK 246 (561)
T ss_pred C------------------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence 0 0134455555544333332211111223344444 333332210
Q ss_pred ------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 867 ------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 867 ------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
....++|+++....+.-. .+-.++|...+|.|+++.+++.+ .+.++.++|+++.- ....+..
T Consensus 247 snKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-----~~~~Pe~---- 316 (561)
T COG5354 247 SNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-----RFYFPEQ---- 316 (561)
T ss_pred cccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccce-----EEecCCc----
Confidence 135788888874443333 25678999999999988776554 68889999998731 1222222
Q ss_pred CCCCeEEEEcCCCcEEEE-EeC---CeEEEEEcCCceeee-eccCCCCCCCeeEEEEcCCCCEEEEEE------cCCeEE
Q 001318 939 AQSDTRVQFHQDQIHFLV-VHE---TQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVC 1007 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~-~~d---~~v~vwd~~~~~~~~-~~~~~~h~~~i~~l~~spdg~~l~s~s------~dg~v~ 1007 (1101)
.-..+.|||.+++++. +.+ |.+.+||........ .+. ....+-+.|||||+++.+.. .|..|.
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~ 390 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIK 390 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceE
Confidence 2256889999999988 443 679999987654443 444 23455668999999988765 478899
Q ss_pred EEEcCCcee
Q 001318 1008 VFSAANLKL 1016 (1101)
Q Consensus 1008 vwd~~~~~~ 1016 (1101)
|||+.....
T Consensus 391 l~~v~g~~~ 399 (561)
T COG5354 391 LWDVYGAKV 399 (561)
T ss_pred EEEecCchh
Confidence 999875443
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=9.1e-11 Score=116.59 Aligned_cols=112 Identities=20% Similarity=0.327 Sum_probs=92.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~ 877 (1101)
..++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...++.+.|+| +|++|++|+. .|.|.+||+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345699999999999887653 5789999996 66666664 56788999999 8999999874 4679999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------CCceEEEeCCCc
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW 921 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~ 921 (1101)
+.+.+.... |. .++.++|||||++|++++. |..++||++.+.
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 988887765 33 4789999999999998874 788999999763
No 257
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.5e-10 Score=115.93 Aligned_cols=255 Identities=12% Similarity=0.082 Sum_probs=176.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEe-cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
.....|+.++|--|++.=+..+. .|..+............. +|++. ........|..++.. ...
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~ 117 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT 117 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence 34567888888877664333333 566666666655544332 12221 233445566666654 456
Q ss_pred EEEEEcCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCCCCeEEEEEecCC--CcEEEEeCCCCceEEEecC----
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG---- 494 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~---- 494 (1101)
|++|-.+|.+.+|..+.+..-. ....+.- ...+..|.-++...+ ++++||.. ..++|||++..+.+.+-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 7888899999999998543110 1112322 356778888877775 67779988 8899999998866654332
Q ss_pred ---ccc--CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 495 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 495 ---h~~--~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
-.- .++++.|.+......|++++.-+.+++||.+.+.. ...+..... .+.++.
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~ 254 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG 254 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence 112 34556666554467899999999999999986432 223333333 555666
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEE-EcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..|+++++++|..-|.+..||++.++.... +++. .+.++++..+|.++++++++-|..|||+|+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 667777899999999999999999988776 5544 447999999999999999999999999999985
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=7.9e-10 Score=127.32 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=138.6
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---CeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
..|.++|... ...+.+..+...+...+|+| |+++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3588888754 33455555666788999999 88888887644 489999998875433 334556677899999998
Q ss_pred EEEE-EeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC----CeEEEEEcCCceeeee
Q 001318 903 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 975 (1101)
Q Consensus 903 ~l~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d----~~v~vwd~~~~~~~~~ 975 (1101)
.|+. .+.++ .|.+|++.++.... ... +. .......|+|||++|+...+ ..|.++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-----l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-----LTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-----CCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58888988754211 111 11 12356789999999887422 2688888887765432
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCC---eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++....... + .. .. ...|+| |++.|+.
T Consensus 318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-------~--~~-~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-------T--GL-DE--SPSFAP-NGRMILY 381 (417)
T ss_pred e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-------C--CC-CC--CceECC-CCCEEEE
Confidence 2 2345677889999999999888776 79999998865432211 1 01 11 467999 6777777
Q ss_pred EecCCc
Q 001318 1053 GLSDGG 1058 (1101)
Q Consensus 1053 ~~~dg~ 1058 (1101)
.+.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 666653
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=4.4e-09 Score=112.22 Aligned_cols=237 Identities=9% Similarity=0.063 Sum_probs=149.8
Q ss_pred EecCCCEEEEEeC-----------CeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEEe-c-cCeEE
Q 001318 813 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 872 (1101)
Q Consensus 813 ~s~dg~~la~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~ 872 (1101)
+|||++.++++.. +.|.+||..+++.+.++.-... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999998887643 6799999999999988864322 234789999 888888765 4 78999
Q ss_pred EEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCC-eEEEEcC-C
Q 001318 873 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D 950 (1101)
Q Consensus 873 vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-d 950 (1101)
|.|+.+++.+.++.--. ...-...+.+. .++ -+.||......+.............+.+... .+ ..-.|++ |
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d 205 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS 205 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence 99999999988776421 11112222221 111 1234443333332211111111122111000 00 0014556 8
Q ss_pred CcEEEEEeCCeEEEEEcCCc-----eeeeeccCCC-----CCCCeeEEEEcCCCCEEEEEEc----------CCeEEEEE
Q 001318 951 QIHFLVVHETQLAIFETTKL-----ECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS 1010 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~-----~~~~~~~~~~-----h~~~i~~l~~spdg~~l~s~s~----------dg~v~vwd 1010 (1101)
|+++.++.+|.|.+.|+.+. .....+.... ..+.+.-+++++|++.|++... .+.|.++|
T Consensus 206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 99999988899999995433 2222221110 1334445999999999887532 24799999
Q ss_pred cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1011 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
..+++.+.++.. | ..+..++++| |++ +|++.. .++.|.+.|+.+++
T Consensus 286 ~~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 286 AKTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999999998772 1 1233799999 567 766555 68899999999987
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=7.3e-09 Score=105.38 Aligned_cols=257 Identities=12% Similarity=0.187 Sum_probs=174.0
Q ss_pred CCCCeeEEEEecCCCEEEEEe----CCeEEEEECCC--Cceee--EecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 874 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw 874 (1101)
....++-++++|+.++|.++. +|.|.-|.+.. |+... ........-+.+++++ ++++|+++. ..|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999998875 36677777764 44322 2222233448899999 898888886 45799999
Q ss_pred Eeec-ceEeee--ecCcccC----------eeEEEEcCCCCEEEEEe--CCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 875 NVRV-DEVKSK--LKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 875 d~~~-~~~~~~--l~~h~~~----------V~~l~~s~dg~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
-++. |.+... +..|.+. +-...|.|++++|++.+ .|+ |.+|+++.|............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 433221 2235554 78889999999999875 454 9999999877655555555444
Q ss_pred CCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCCc--e--eeeecc--CCC--CCCCeeEEEEcCCCCEEEEEEc-CCeEEE
Q 001318 940 QSDTRVQFHQDQIHFLV-V-HETQLAIFETTKL--E--CVKQWV--PRE--SSAPITHATFSCDSQLVYACFL-DATVCV 1008 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~~--~--~~~~~~--~~~--h~~~i~~l~~spdg~~l~s~s~-dg~v~v 1008 (1101)
...+.++|+|++++..+ . -+++|.+|..+.. + .++.+. +.. -.....+|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 46699999999998887 3 6789999998773 2 122111 111 1456788999999999987652 236888
Q ss_pred EEcC--CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-CcEEEEeccCCCccccCCCC
Q 001318 1009 FSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1009 wd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-g~v~vW~~~~~~~~~~~~~~ 1076 (1101)
|.+. +|++...-. .. .+...|-...|.+ ++++|+++..| .+|.++.+....+.+.....
T Consensus 271 f~V~~~~g~L~~~~~---~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 271 FSVDPDGGKLELVGI---TP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEcCCCCEEEEEEE---ec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 8764 343322111 11 2224566789998 56777766665 57999999877766665444
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.28 E-value=3.1e-10 Score=113.09 Aligned_cols=216 Identities=13% Similarity=0.183 Sum_probs=142.8
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEc-cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.++||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 47899999999999998888999999999999954 444433221 112356789999999888 6888888999988
Q ss_pred EeCC----CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 481 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 481 wd~~----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+.+. ....++....|...|..+.|+..+ ..+++.+.|..+. |......... ++ +.+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~-~hc~e~~~~l-----g~------------Y~~ 154 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFA-WHCTESGNRL-----GG------------YNF 154 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceE-EEeeccCCcc-----cc------------eEe
Confidence 8654 334456667899999999886544 6899999988764 5333221111 00 000
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
..... ...+.- .+...|...|.|.+-.+. .-.++.++.++ ...+.+++|.+..+.|.+|..|..+.+||+
T Consensus 155 ~~~~t----~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 155 ETPAS----ALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred eccCC----CCceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 00000 000000 034445555555555443 33455666544 558999999999999999999999999999
Q ss_pred cCccccccccccccc
Q 001318 635 SDGIRLLRTFENLAY 649 (1101)
Q Consensus 635 ~~~~~~~~~~~~~~~ 649 (1101)
.........+.+|..
T Consensus 227 gg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 227 GGRKGTAYELQGHND 241 (404)
T ss_pred cCCcceeeeeccchh
Confidence 766444444444444
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.2e-09 Score=123.67 Aligned_cols=227 Identities=10% Similarity=0.080 Sum_probs=132.6
Q ss_pred cccCCCCcEEEEEecCCCeE--EEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~l--latg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+......+.+-+|||||+.+ +++...+| .|.+.++.+++... +....+.....+||
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wS 239 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFS 239 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEEC
Confidence 33455667788999999863 33544444 58888888776543 22234455678999
Q ss_pred cCCCeEEEEEc-----CCeEEEEEccCCc--eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE--eCCC-C
Q 001318 417 PDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-G 486 (1101)
Q Consensus 417 pdg~~las~~~-----d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~ 486 (1101)
|||++||..+. |-.+.+|++.++. ..+.. ..++.......+|+|||+. ++.+...++...+| ++.. +
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccc
Confidence 99999987653 2234557776532 12211 2223344567899999995 23334456655555 4432 3
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCc
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 563 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~ 563 (1101)
.....+..+...+....|+ +||+.|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 317 ~~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG----------- 382 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS----------- 382 (428)
T ss_pred cceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC-----------
Confidence 3344455454556667774 556777766543 368899988765432 22112233344455544
Q ss_pred eeEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 564 LGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 564 ~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
+.|+... ....|++||+.+++........+ .+...+|+|-.
T Consensus 383 ----------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 383 ----------LHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred ----------CEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 4555432 24578999998877655543222 35567888743
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.7e-09 Score=124.40 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=135.0
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecC--CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
.....+..+...+...+|||||++|+.+...+ ..|.+||+.+++... +....+.+...
T Consensus 189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~ 248 (430)
T PRK00178 189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP 248 (430)
T ss_pred CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence 33445556788899999999999855555443 368999998886543 22233445679
Q ss_pred EEecCCCeEEEE-EcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCce
Q 001318 414 IWSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAK 488 (1101)
Q Consensus 414 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~ 488 (1101)
+|||||++|+.. +.++ .|.+||+.+++..+ +..+........|+|||+.+ +++...++ .|+++|+.+++.
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCE
Confidence 999999998854 4444 68888999876432 44556667788999999963 33333333 578888888775
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
..... .........| +++|+.++..+. ++ .|.+||+.+++... +... .....
T Consensus 324 ~~lt~-~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~~-------------------- 378 (430)
T PRK00178 324 ERVTF-VGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-SLDES-------------------- 378 (430)
T ss_pred EEeec-CCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-CCCCC--------------------
Confidence 43221 1122233455 455667766654 33 47778887654322 1111 11112
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 566 VVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
..|+|+|+.++..+.+ ..|+++++.. .....+.... ..+...+|+|
T Consensus 379 -p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 379 -PSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred -ceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 2455565666665432 3477777743 3333443222 2355667765
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.5e-09 Score=124.06 Aligned_cols=222 Identities=13% Similarity=0.088 Sum_probs=131.1
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+..+...+.+..|||||++|+.+...++ .|.+||+.+++... +....+.....+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wS 270 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFS 270 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeEC
Confidence 344556778999999999998655554444 58889998876532 11112234578999
Q ss_pred cCCCeEEEE-EcCCe--EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--cEEEEeCCCCceEEE
Q 001318 417 PDGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYI 491 (1101)
Q Consensus 417 pdg~~las~-~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~ 491 (1101)
|||+.|+.. +.++. |.+||+.+++..+ +..+.......+|+|||+. ++++...++ .|+++|+.+++....
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEE
Confidence 999988764 55664 7788888876432 4455566788999999996 333443344 467778877765432
Q ss_pred -ecCcccCeEEEeeeecCCccEEEEEec-CCc--EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 492 -FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 492 -~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
+.++ .....+| +++|++|+..+. ++. |.++|+.++... .+... ..... .
T Consensus 346 t~~g~--~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~---------------------p 398 (448)
T PRK04792 346 TFEGE--QNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDES---------------------P 398 (448)
T ss_pred ecCCC--CCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCC---------------------c
Confidence 2322 2233466 455667666554 444 444565554322 11111 00111 2
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 568 QFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
.|+|+|+.++..+. ++ .+++++. +|.....+..... .+...+|+|
T Consensus 399 s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 399 SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 35566666655443 33 3777787 4555555553322 456677876
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=8.8e-10 Score=109.79 Aligned_cols=277 Identities=14% Similarity=0.223 Sum_probs=172.6
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCccccccccc--CCCCCeEEEEEecCCC
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK--DPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~ 420 (1101)
...+-|.++.|..+|.+ ||||..+|.|.++.-+.... .+++.+..- .+.......++ .-...|..+.|.+++.
T Consensus 23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~---~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK---GEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred chhcceeeEEeecccce-EeecCCCCeEEEeecccccc---cceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCC
Confidence 34577999999999996 99999999999997543322 011111000 00000010111 1235788999999655
Q ss_pred --eEEEEEcCCeEEEEEccCCceee--------------------------------eeee-eccccCCeeEEEEcCCCC
Q 001318 421 --LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNK 465 (1101)
Q Consensus 421 --~las~~~d~~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~~~~s~d~~ 465 (1101)
.++..+.|.+|++|.+....... +... -.+|.--|+++.++.|..
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 56677889999999875321100 0001 135777899999999988
Q ss_pred eEEEEEecCCCcEEEEeCCCCceEE---Eec-----CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce----
Q 001318 466 QLCVITCGDDKTIKVWDATNGAKQY---IFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---- 533 (1101)
Q Consensus 466 ~~~l~s~~~d~~i~iwd~~~~~~~~---~~~-----~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---- 533 (1101)
.++++ +|=.|.+|+++--..-. .++ .-+..|++..|+|... ..++-.+..|+|++-|++.....
T Consensus 178 --t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 178 --TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred --eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchh
Confidence 45554 57889999987432221 222 2344578888888765 46666677899999999853221
Q ss_pred eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEEcCCCCC-------
Q 001318 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL------- 605 (1101)
Q Consensus 534 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------- 605 (1101)
..+..+..+.. +.+-..--..+.-+.|+.+|+++++-+. -+|++||+ ...+++.+++.|...
T Consensus 254 KlfEepedp~~---------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 254 KLFEEPEDPSS---------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhccccCCcc---------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 11111111111 0011111124455677777777777443 58999999 556777777654321
Q ss_pred ---CCc---CeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 606 ---PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 606 ---~~v---~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
..| ..++|+.++.++++|+..+.+++++...|.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 112 358899999999999999999999977663
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=4.1e-09 Score=121.40 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=123.9
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--c
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 477 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 477 (1101)
+..+...+...+|||||++||.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566789999999999999987654 479999999876433 3345566778999999986 344555444 5
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|++||+.++... .+..+........|+ ++|+.|+..+. ++ .|.+||+.+.+. ..+......
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~------------ 323 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY------------ 323 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC------------
Confidence 899998877653 344444444455664 56677766554 33 466666654332 122212222
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
.....|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||++|+..+.++
T Consensus 324 ---------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 ---------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ---------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 23345666667777777665 7899999876543 332221 234578999999988877654
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=6.6e-09 Score=110.11 Aligned_cols=294 Identities=12% Similarity=0.155 Sum_probs=181.6
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.-+.|||+.++|++-+..-.+.-|+= .....+.+||+.+|.+.+...........-.-..||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 34667778888888877665432222210 0001234666677765544322101122223478999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecceEeeeecCcccCee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 893 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~ 893 (1101)
|+|--....|.||+..+..++..-.-....|....|+| .+++||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999887554433222356788999999 88888865422 3677777777777776655544334
Q ss_pred EEEEcCCCCEEEEEeC----------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--Ee--C
Q 001318 894 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E 959 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~--d 959 (1101)
.+-|-.+|.+|+.--. =..+.|+.+..... ....+.+. ..|...+|-|.|..+++ +. .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc-------hheeeeeeccCCCeEEEEEccccc
Confidence 4677788888875321 12345555554221 11111111 36788999999998888 32 3
Q ss_pred CeEEEEEcCC-c---eeeeeccCCCCCCCeeEEEEcCCCCEEEEEE---cCCeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 960 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 960 ~~v~vwd~~~-~---~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
.++.+|.+++ . +.+..+. ....+.+.|||.|++++.+. ..|.+..+|..-......-. +.+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh--- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH--- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence 4788998874 2 2233332 45678899999999988665 46889999987533322111 111
Q ss_pred CCccceEEEEeCCCCCEEEEEec------CCcEEEEeccCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~------dg~v~vW~~~~~ 1067 (1101)
.....+-|.| .|+|+++++. |..-++|+++..
T Consensus 538 --~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 538 --FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred --cccccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 1223688999 5899999886 445677777544
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=9.8e-09 Score=108.88 Aligned_cols=320 Identities=11% Similarity=0.169 Sum_probs=203.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-----------CcEEEEE
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 633 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw~ 633 (1101)
+.+.|+|.|.+|++--.. -|.+|--.+...++.+.+. .|.-+.|||..+||++-+.. ..++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 446667777777776544 4789987777777777532 37789999999999986532 4577788
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.+| ...+.+... . +..
T Consensus 289 I~tG-~lkrsF~~~------------------~--------------------------------------------~~~ 305 (698)
T KOG2314|consen 289 IATG-LLKRSFPVI------------------K--------------------------------------------SPY 305 (698)
T ss_pred cccc-chhcceecc------------------C--------------------------------------------CCc
Confidence 7777 444333210 0 000
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
..-.-+.||.|+++++....+ .|.||+...- .+.| ++
T Consensus 306 -------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--------------~lld---~K 342 (698)
T KOG2314|consen 306 -------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPSF--------------MLLD---KK 342 (698)
T ss_pred -------------------------cccceEEeccCCceeEEeccc-eEEEEecCce--------------eeec---cc
Confidence 111235789999988877764 6777765210 1111 11
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEe---C---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 866 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~- 866 (1101)
.+ .-..|....|+|.+..||.-. + ..+.+..+.+++.+++-+-+.-.=..+.|-. .|.+|+.--
T Consensus 343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 11 234578889999999999765 2 3588888888888877665554445566766 677776532
Q ss_pred ---------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCC
Q 001318 867 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 867 ---------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
.-..+.|+.+......-..-.-...|...+|-|.|..+++-+. -.++.+|.+++.. ....++..+..
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-KKPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-Cchhhhhhhcc
Confidence 1123445555443322222224567889999999988776554 3578999988522 22233333332
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc------CC
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1004 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~------dg 1004 (1101)
. ....+.|+|.|++++++ ..|.+..+|+.-..+..+-.+ .| ...+.+.|.|.|+|+++++. |.
T Consensus 493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-cc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 2 34789999999999873 468899999985444333221 22 35678899999999999885 44
Q ss_pred eEEEEEcC
Q 001318 1005 TVCVFSAA 1012 (1101)
Q Consensus 1005 ~v~vwd~~ 1012 (1101)
--++|++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 46667765
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=3.3e-09 Score=114.15 Aligned_cols=188 Identities=16% Similarity=0.293 Sum_probs=148.1
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeEecCC---CCCeEEEEEe------c-------------CCCcEEEEEeccCeE
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 871 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v 871 (1101)
|-..++|... ||.+++||...++....|... .+..++..|. | .|..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788877 899999999998887777542 3344444442 1 144588889999999
Q ss_pred EEEEeecceEeeeec--CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 872 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+|++..++...++. .|.+.|+++.++.+-..|.|++.|+.+..|+..... ......+.. ..+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~---~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQK---PLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCC---CccceEEEcC
Confidence 999999999888885 699999999999999999999999999999998744 233333333 3689999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC-----CCEEEEE-EcCCeEEEEEcCC
Q 001318 950 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1013 (1101)
Q Consensus 950 dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd-----g~~l~s~-s~dg~v~vwd~~~ 1013 (1101)
||+.++++ .++|++||+++++.+..|. ||.++|.+++|.-+ |.+++++ ..+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988874 4789999999999999998 99999999999887 6776544 3455577786543
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=9.8e-09 Score=117.31 Aligned_cols=210 Identities=10% Similarity=0.075 Sum_probs=132.0
Q ss_pred eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-cC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCE
Q 001318 827 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 903 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 903 (1101)
.|.++|..... .+.+..+...+....||| ||+.|+..+. ++ .|++||+.+++... +....+.....+|||||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 57777875543 345555667888999999 8888877653 33 68899998776422 2222333457899999998
Q ss_pred EEE-EeCCCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe--C--CeEEEEEcCCceeeeec
Q 001318 904 LVS-SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E--TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 904 l~s-~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d--~~v~vwd~~~~~~~~~~ 976 (1101)
|+. .+.++. |.+||+.+++.. ..... . ......+|+|||++++... + ..|.++|+.+++.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-----~lt~~-~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-----RITRH-R---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-----ECccC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 875 455665 777788775421 11111 1 2356789999999988743 2 35777788877654432
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcC-C--eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
. .+ ......+|+|||++|+..+.+ + .|.++|+.+++... +. .+ .... ...|+| ||+.|+..
T Consensus 347 ~-~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt------~~--~~d~---~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 347 F-EG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT------ST--RLDE---SPSVAP-NGTMVIYS 410 (448)
T ss_pred c-CC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc------CC--CCCC---CceECC-CCCEEEEE
Confidence 1 12 223457999999998776553 3 46677888886532 22 01 0001 357999 56766554
Q ss_pred ec-CCc--EEEEec
Q 001318 1054 LS-DGG--VHVFEP 1064 (1101)
Q Consensus 1054 ~~-dg~--v~vW~~ 1064 (1101)
+. +|. ++++++
T Consensus 411 ~~~~g~~~l~~~~~ 424 (448)
T PRK04792 411 TTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEEC
Confidence 44 443 666666
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.9e-09 Score=115.93 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=120.0
Q ss_pred CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001318 749 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 827 (1101)
Q Consensus 749 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~ 827 (1101)
+...++-+...|.|.+|++.. |.+.. .+...+|.+.|.++-++.+-..|.+++ |+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~-~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITA-KLSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEE-EEecCCCCCcceeeecccccCceEecCCcee
Confidence 444577777789999888632 22221 233345999999999999999999988 899
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC-----CC
Q 001318 828 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 902 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-----g~ 902 (1101)
+..|+..+++.++.++.....+.+++++| |+.+|++|+ +.|++||+++++.+.+|.||.++|.+++|.-+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999998899999999999 899999886 67999999999999999999999999999876 66
Q ss_pred EEEE-EeCCCceEEEeCCC
Q 001318 903 VLVS-SGADSQLCVWSSDG 920 (1101)
Q Consensus 903 ~l~s-~s~D~~v~iwd~~~ 920 (1101)
++.+ +..+.-+.+|-++.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 6554 45566688887765
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.6e-08 Score=116.30 Aligned_cols=199 Identities=12% Similarity=0.092 Sum_probs=123.2
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC--c
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 477 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~--~ 477 (1101)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887644 469999999886433 3333345567999999996 333554444 6
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEec-CC--cEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|++||+.+++.. .+..+........|+ ++|+.++..+. +| .|.++++.+++... +.....
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~------------- 331 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGN------------- 331 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-------------
Confidence 888899887654 454455555556664 55566655543 44 46666665543221 111111
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-C--c
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 628 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 628 (1101)
......|+|+|+.++..+.+ + .|.+||+.+++... +... . ......|+|||++++..+.+ + .
T Consensus 332 --------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 332 --------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-S--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred --------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence 11224566666677665532 2 58889998876533 3221 1 12356899999999877654 3 3
Q ss_pred EEEEEec
Q 001318 629 IKILATS 635 (1101)
Q Consensus 629 i~iw~~~ 635 (1101)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=1.8e-08 Score=113.97 Aligned_cols=304 Identities=12% Similarity=0.072 Sum_probs=179.8
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEE
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 547 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 547 (1101)
.++.++.++.|..+|..+|+.+..+........... .++..++.++.++.+..+|..+++.......... +.+.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~- 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSP- 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecC-
Confidence 477888889999999999999877654332222222 2335788888999999999988877765443221 1000
Q ss_pred EccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCCCEEEEEe
Q 001318 548 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 548 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 624 (1101)
..+ .+..++.++.++.|+.||.++|+.+..+........ ..+... .+..++.+.
T Consensus 141 -------------------p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 141 -------------------PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred -------------------CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 000 124577788899999999999998887764322100 011122 234677888
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.+|.+..+|..+|....+ ...... .+ .
T Consensus 198 ~~g~v~ald~~tG~~~W~-~~~~~~---------------~g-----------------------------------~-- 224 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWE-QRVALP---------------KG-----------------------------------R-- 224 (377)
T ss_pred CCCEEEEEEccCCCEeee-eccccC---------------CC-----------------------------------C--
Confidence 889999999988833221 100000 00 0
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
. ..-++.+. ...+ .+ .+..+++++.+|.+..||..+++
T Consensus 225 ----~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 225 ----T-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ----C-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 0 00000000 0000 11 13356667777888887764321
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEE
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNII 862 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~l 862 (1101)
.+|....+ .....+ .++..+++++ +|.|..+|..+++.+........ ........ +..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~---g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV---GGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE---CCEE
Confidence 13433210 011122 2445666666 89999999999987766532222 22233332 4478
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeE-EEEcCCCCEEEEEeCCCceEEE
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D~~v~iw 916 (1101)
++++.+|.|+++|..+++.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 88999999999999999999888766654433 3333 3 358888899988765
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=5.8e-09 Score=102.08 Aligned_cols=200 Identities=12% Similarity=0.133 Sum_probs=138.0
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee-cceEee
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~ 883 (1101)
..++.|++.+.-++++. +|.+.+-+....... ++.+.|+-++....|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45678888888888876 788886665554443 47889999999999998788999999999999999998 445444
Q ss_pred e-ecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeC
Q 001318 884 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE 959 (1101)
Q Consensus 884 ~-l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d 959 (1101)
. .+-|...|.++.-+| .+.+|+||+.|..|++||.+.-.+ .++.+.. .+.|..+..+|. ++.|+++.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k------Pl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK------PLFKAKV--GGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC------ccccCcc--ccceEEEEecchhhhHHHHHHHh
Confidence 3 466888899998885 578999999999999999985321 1111111 158899999985 344555555
Q ss_pred CeEEEEEcCCceee---eeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEE-EEEcCCce
Q 001318 960 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANLK 1015 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~---~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~-vwd~~~~~ 1015 (1101)
+..+|-+.+.+... .......|.+-++.-.|.....+|+|++ .|+.++ +|-..+++
T Consensus 276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55666665544322 1111224555555555644446788765 566644 77655543
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.11 E-value=7.4e-08 Score=108.91 Aligned_cols=227 Identities=16% Similarity=0.123 Sum_probs=135.4
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 440 (1101)
+++++.+|.|.-+|..+|+.+-...+. ..... .. ..++..+++++.++.+..+|..+|+
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p--~v~~~~v~v~~~~g~l~ald~~tG~ 126 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GV--GADGGLVFVGTEKGEVIALDAEDGK 126 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ce--EEcCCEEEEEcCCCEEEEEECCCCc
Confidence 778888899999999999876542221 00011 11 1257888889999999999999998
Q ss_pred eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE-----EEeeeecCCccEEEE
Q 001318 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQFIFS 515 (1101)
Q Consensus 441 ~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~~l~s 515 (1101)
.+.... + .+.+.+.-.. .+. .++.++.++.+..||.++|+.+..+......+. +... . + ..++.
T Consensus 127 ~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~~v~~ 195 (377)
T TIGR03300 127 ELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-GGVLV 195 (377)
T ss_pred Eeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-CEEEE
Confidence 764321 1 1222211111 233 366677899999999999999887754332211 1111 1 2 36778
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 595 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 595 (1101)
+..+|.+..+|..+++......... +.+...... .........+ .+..+++++.+|.++.||..+|+.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence 8888999999998876654332110 000000000 0000000001 134677788899999999999987
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+....... ..... .++..+++++.+|.+..+|..++
T Consensus 264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 77665211 11122 24567777778888888887666
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3.2e-08 Score=112.12 Aligned_cols=204 Identities=13% Similarity=0.068 Sum_probs=118.3
Q ss_pred ccCCCCCeEEEEEecCCCeEE---EEEcC--CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC---
Q 001318 403 VKDPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--- 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~--- 474 (1101)
+......+..-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.+ +++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence 344455677889999998633 33333 458888998876443 33334455678999999963 333322
Q ss_pred -CCcEEEEeCCCC---ceEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEEEEecCC--C-CceeeecCCCCceeEE
Q 001318 475 -DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDN--L-GSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 475 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~--~-~~~~~~~~~~~~v~~~ 546 (1101)
|..+.+|++..+ +......++.+.....+| ++||+.|+..+ .+|...+|.+.. . .....+......+
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~--- 329 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS--- 329 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc---
Confidence 333455777653 333333333333445666 56667666655 466656664432 1 1122222222222
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
....|+|||+.|+..+. ...|++||+.+++....... ...+....|+|||++|+..
T Consensus 330 ------------------~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 330 ------------------SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ------------------cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEE
Confidence 33455666666665543 24699999998876544322 1245679999999988865
Q ss_pred eC---CCcEEEEEecCc
Q 001318 624 TN---DNGIKILATSDG 637 (1101)
Q Consensus 624 ~~---dg~i~iw~~~~~ 637 (1101)
.. ...|+++++.++
T Consensus 389 ~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 389 AGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCceEEEEECCCC
Confidence 43 346778887766
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=6.3e-08 Score=120.84 Aligned_cols=257 Identities=9% Similarity=0.058 Sum_probs=162.4
Q ss_pred eeEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecC--C------------CCCeEEEEEecCCCcEEEEEe-ccCe
Q 001318 808 VPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMP--P------------PPAATFLAFHPQDNNIIAIGM-DDSS 870 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~sp~d~~~lasg~-~dg~ 870 (1101)
...+++++++..++++ . ++.|++||.. +..+..+.+ . -.....+++++ +++.|+++. .++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 3568898765444444 4 6889999975 444444332 1 12357899999 666555554 4578
Q ss_pred EEEEEeecceEeeeecC--c---------------ccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccce---ee
Q 001318 871 IQIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 929 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~---~~ 929 (1101)
|+++|+.++. +.++.+ . -..-..|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 9999987764 333211 0 01235799999 5666777778899999998775421100 00
Q ss_pred ecCCCCC---CCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceeeeecc-----------CC--------CCCCCe
Q 001318 930 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWV-----------PR--------ESSAPI 985 (1101)
Q Consensus 930 ~~~~~~~---~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~~~~~-----------~~--------~h~~~i 985 (1101)
....+.. ........++|+|+|++|++ ..++.|++||+.++....... .. ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001110 01134577999999986655 467899999998765321110 00 011235
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc-cCCCC--CCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-LPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
..++|+++|.++++-+.++.|++||..++........... ..+|. ...--.|..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 6899999999989888999999999998876643321100 00110 01112366899998 68899999999999999
Q ss_pred eccCCC
Q 001318 1063 EPLESE 1068 (1101)
Q Consensus 1063 ~~~~~~ 1068 (1101)
|+.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 998876
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=5.6e-08 Score=121.28 Aligned_cols=260 Identities=9% Similarity=0.046 Sum_probs=163.5
Q ss_pred EEEEEcCC-CceEEeeecCceEEeeeccccccCCCCceeeeecC-ccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 742 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAP-QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 742 ~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..++++++ +..+++-+.++.|++||.... ....... .......|..-. ..-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-------~i~~ig~~g~~G~~dG~~~~------a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-------FIVQIGSTGEEGLRDGSFED------ATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-------EEEEEccCCCcCCCCCchhc------cccCCCcEEEEeCCCCE
Confidence 46788875 556666666788998886322 1100000 000001111100 12234688999999887
Q ss_pred EEEEe--CCeEEEEECCCCceeeEecCC-----------------CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 820 VMSAS--GGKISLFNMMTFKTMATFMPP-----------------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 820 la~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
|+++. ++.|+++|..++. +.++.+. -.....++|+|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 5779999987654 4443211 11346799999666777777788999999987765
Q ss_pred Eeeeec---------Cc------ccCeeEEEEcCCCCEE-EEEeCCCceEEEeCCCcccccce--------eeecC---C
Q 001318 881 VKSKLK---------GH------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FLQIP---T 933 (1101)
Q Consensus 881 ~~~~l~---------~h------~~~V~~l~~s~dg~~l-~s~s~D~~v~iwd~~~~~~~~~~--------~~~~~---~ 933 (1101)
.. .+. ++ -....+|+|+|||+.| ++-+.++.|++||+.++...... ..... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 111 11 1234679999999855 45566789999999875421100 00000 0
Q ss_pred CC--CCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccC-----------CCCCCCeeEEEEcCCCCEEEE
Q 001318 934 GR--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-----------RESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 934 ~~--~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~-----------~~h~~~i~~l~~spdg~~l~s 999 (1101)
+. .........++++++|..+++ ..++.|++||..++........ .+.-.....++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000123468999999987777 5889999999988776533211 112236789999999999998
Q ss_pred EEcCCeEEEEEcCCcee
Q 001318 1000 CFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 1000 ~s~dg~v~vwd~~~~~~ 1016 (1101)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=130.57 Aligned_cols=199 Identities=19% Similarity=0.347 Sum_probs=156.8
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.+-..|.++.=+|...+ .+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+.+|...
T Consensus 2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence 45678999999999986 89999999999999998877653 11 2233 789999999999999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec---CCCcEEEEeCCC-CceEEEecCcccC
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAP 498 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~-~~~~~~~~~h~~~ 498 (1101)
..+..||.+.+|.+.. +.....+.|........|-. . .+++++ .++.+.+||..- +..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999883 34446778999999999976 3 466654 578899999642 2221222779999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
++++++.|. .++|++|+.+|.|++||++..+.+..+.. ++ ...++++
T Consensus 2339 aT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2339 ATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVT 2385 (2439)
T ss_pred ceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeec
Confidence 999998654 48999999999999999998776665543 11 1257999
Q ss_pred EeCCCcEEEEECCCCceeEEEcC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
|+..|.|+||++.....+..+..
T Consensus 2386 ~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cCcccceEEEEccccchhhcCch
Confidence 99999999999998877777753
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.1e-09 Score=115.09 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=149.5
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC-cee---eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCc
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 477 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~---~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 477 (1101)
.+.||...|..++--.+.+-+++++.|++|++|.++.. ..+ ....+++.|..+|.++.|-.+.+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999998888999999999999999998742 222 25567889999999999999987 56654 789
Q ss_pred EEEEeCCCCceEEEec-----CcccCeEEEeeeecCCccEEEEE-ecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 478 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
|.+||.--|+.+..+. +-.+.|.++ ++-+..+++.| +...+|+++|.+..+-...+...+. |
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~- 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P- 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-
Confidence 9999988887765332 222334333 34455566665 6789999999987654443322110 0
Q ss_pred CceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 552 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
..+..+.++++.+.|++++++-..|.|.+.|.++|+.+..+..... ....++ .|..+.|+....|.++-+
T Consensus 874 -------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV 943 (1034)
T KOG4190|consen 874 -------GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV 943 (1034)
T ss_pred -------CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence 1123566788888889999999999999999999998877653321 111111 345667777777888888
Q ss_pred -EEecCc
Q 001318 632 -LATSDG 637 (1101)
Q Consensus 632 -w~~~~~ 637 (1101)
|...++
T Consensus 944 nWhaldg 950 (1034)
T KOG4190|consen 944 NWHALDG 950 (1034)
T ss_pred eehhcCC
Confidence 876655
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=3.8e-08 Score=96.48 Aligned_cols=190 Identities=19% Similarity=0.123 Sum_probs=131.3
Q ss_pred CCCcEEEEEec---CCCeEEEEEecCCcEEEEeCCCcceeEe-eeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 345 GSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 345 ~~~v~~~~~sp---dg~~llatg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
++.+..+.|+- +|...++-+-.+|.|.++.....+.... +++..- .-....-.++.|++.|.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~--------------ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK--------------KISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh--------------hhhheeeeEEEeeccCc
Confidence 45566666653 4554567777788888887654332221 111100 00011345788999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEE-ecCcccC
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 498 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 498 (1101)
-++++..+|.+.+-+.... .+....++++|.-..+.+.|+..... ++.+||+|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985554443 24444468899999999999987776 79999999999999999 4555544 4568888
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccC
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 551 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 551 (1101)
|.++.-++ +.+.++++|+.|-.|++||.++......-....+.|..+..+|.
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence 98887543 45679999999999999999976555443444455666665554
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=9.4e-09 Score=112.36 Aligned_cols=303 Identities=13% Similarity=0.153 Sum_probs=186.5
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCC--CCCeEEEEEecC-
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPD- 418 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd- 418 (1101)
+.-.+.+.++.++|.|+. +|.++.-| +.|-|+...-.... ...| .-.|-.+.|||.
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSPHP 79 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecccCC
Confidence 445678999999999997 67766644 34445543211110 1111 124666778773
Q ss_pred -CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEecCcc
Q 001318 419 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHE 496 (1101)
Q Consensus 419 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~ 496 (1101)
-.+-++......-.+|++.....-...+.+.||...|+.+.|.+.... ++++++.|..+..||+++.. .+..+..-.
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence 334444444555778998754433444568899999999999999887 89999999999999998754 455554444
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
..-..|.|+... + .+.+.+..+.|++||.+.+.. ...+.++...+..+.|..--. ..
T Consensus 159 s~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------------------s~ 216 (1081)
T KOG0309|consen 159 SAASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------------------SE 216 (1081)
T ss_pred ccCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--------------------hh
Confidence 455668887543 3 355556678899999998654 445566666666665543221 34
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC-----------CEEEEEeCCCcEEEEEecCcccccccc
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-----------CLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+.+.+.||+|+.||............... ..+..-.+.|-| ..+..-.-+.....|+..++.+.+..+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccccceecccc-CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 78889999999999875433222211111 134444444422 222222223344456666676788889
Q ss_pred ccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 645 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
.||.+.+..- .++..+ .-+.-.....-.|++-+.|.++++|.+.+
T Consensus 296 ~GH~D~V~eF------lWR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEF------LWRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHH------hhhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 9998875421 001000 00111112334688999999999999874
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=4.4e-09 Score=110.74 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=155.9
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
+|...|+.++--.+.+.+++++ |.+|++|.++. ..+..++..|..+|..+.|-. +.++++++ ||-|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888898887777777788888 99999999863 346778899999999999999 88888764 8899999
Q ss_pred EeecceEeeeecC--cccCeeEEEEcC--CCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 875 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 875 d~~~~~~~~~l~~--h~~~V~~l~~s~--dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|.--++++..+.. ..+.+..+.--+ |...++.+ +...+|+++|.+.++...........++. ..+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence 9887777764421 223333333333 33444433 67899999999887644333333223332 4678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEE-EEcCCceeeeecC
Q 001318 950 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1021 (1101)
Q Consensus 950 dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~v-wd~~~~~~~~~~~ 1021 (1101)
.|++++++ ++|.|.+.|..+|+.+..|.+- .-....++ .|..+.|+....|.++.| |-..+|....+.+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 99999995 8999999999999999988732 23333444 466778888888999999 9999888877666
No 284
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.9e-07 Score=102.41 Aligned_cols=109 Identities=13% Similarity=0.320 Sum_probs=81.6
Q ss_pred EEEEecCCCeEEEEEec----CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 350 SMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
-..|+|... ++|+++. .|.|-||- ++|+.-...+ . .-.+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhhc
Confidence 346788877 4666654 46788874 5555332111 1 1235679999999999999
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
-.-|.+.+|...+.+.- .....|..+|..+.||++|. .++|+..-|.|.+|...-
T Consensus 78 we~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence 99999999998875422 23456999999999999999 899999999999998763
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=1.4e-08 Score=104.21 Aligned_cols=165 Identities=18% Similarity=0.169 Sum_probs=112.8
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE---
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV--- 424 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las--- 424 (1101)
+..+.++|+|+ |+|++..+....++++..... ..+.++.. .... .-+++.|-.+......
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~~---~~~ai~~~~~~~sv~v~dk 127 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVPK---RPTAISFIREDTSVLVADK 127 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------eccc---CcceeeeeeccceEEEEee
Confidence 34455666777 588887777777777655433 11111100 0111 2233444444444433
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC 503 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~ 503 (1101)
++....+.+|....+.+.. +-||-..++.++|+||++ +++++..|..|+|-....--.+..| -||+..|..++
T Consensus 128 agD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS 201 (390)
T ss_pred cCCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence 4556667777776654332 568999999999999998 7999999999999887766666555 57999999998
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeecC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 538 (1101)
.. ++..|+++|.|++|++||+.+++.+.++..
T Consensus 202 l~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 202 LT---DNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ec---cCceeeecCCCCcEEEEecccCCcccccch
Confidence 63 336799999999999999999888765543
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=122.62 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=155.3
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|-..|.++.=+|...+-+||+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4455668899999999999999999999999999999887655443 33 8999999999999 688888999999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEe---cCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
+. .+.....+.|......+.|.. ..+++++ .++.+.+||....... ..+...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence 65 677777888988888887754 3566654 4688999987542221 111223
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+.+..+++++-|....|++||.+|.|++||++..+.++.++. +. ...++++|+..|.++||++... .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 344666777777778999999999999999999888777653 33 5678999999999999999776 5
Q ss_pred ccccc
Q 001318 640 LLRTF 644 (1101)
Q Consensus 640 ~~~~~ 644 (1101)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 55544
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.1e-06 Score=87.19 Aligned_cols=208 Identities=16% Similarity=0.148 Sum_probs=137.9
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCC--ceeeE---ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 810 CFALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.++.+.||+.||+..|..|.|=..++. ..+.. -+.....=+.++||| |+.+||.+...|+|++||+.... +..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 367889999999999988888776542 12222 222344568899999 99999999999999999987543 323
Q ss_pred ecC-------cccCeeEEEEcCC------CCEEEEEeCCCceEEEeCCCcccccceeeec--CCCCCCCCCCCeEEEEcC
Q 001318 885 LKG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 885 l~~-------h~~~V~~l~~s~d------g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~ 949 (1101)
+.. -..+|.+|.|-+- ...|+....+|.++=|-+..+.......... +..+. +..|.++.++|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHP 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcC
Confidence 321 2356777777542 1246666778888877764432222221111 11222 25899999999
Q ss_pred CCcEEEEEe--C-C---------eEEEEEcCCcee----e-----------------eec-----cC-CCCCCCeeEEEE
Q 001318 950 DQIHFLVVH--E-T---------QLAIFETTKLEC----V-----------------KQW-----VP-RESSAPITHATF 990 (1101)
Q Consensus 950 dg~~la~~~--d-~---------~v~vwd~~~~~~----~-----------------~~~-----~~-~~h~~~i~~l~~ 990 (1101)
.-++|++++ . . .+..|.+-++.. + +.. .. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 988888731 1 1 356665533211 0 000 00 012567999999
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
||||++||+...+|.|.+|++.+.++.....
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999998887766
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.8e-06 Score=97.02 Aligned_cols=210 Identities=8% Similarity=0.046 Sum_probs=129.2
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEec---cCeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~---dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
..|.+-|..... .+.+.... ......|+| |++ .++..+. +..|+++|+.+++..... ...+.+....|||||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCC
Confidence 346666654333 33333233 677899999 776 4665443 357999999887654433 345556678899999
Q ss_pred CEEEE-EeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----eEEEEEcCCceeee
Q 001318 902 NVLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK 974 (1101)
Q Consensus 902 ~~l~s-~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~v~vwd~~~~~~~~ 974 (1101)
+.|+. .+.+ ..|.++|+.+++.. .+....+ ......|+|||+.|+...+. .|.++|+.+++..+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 87764 4334 45777788775421 1111111 12455799999998885443 78899998887754
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcC---------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
.... +. ....|||||++|+..+.. ..|.+.|+++++.. .+... + . .. ...|+|
T Consensus 316 lt~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~-~~--~p~~SP- 377 (419)
T PRK04043 316 VVFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V-NQ--FPRFSS- 377 (419)
T ss_pred CccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C-cC--CeEECC-
Confidence 4321 21 124899999998876643 36888899888753 33311 1 1 11 478999
Q ss_pred CCCEEEEEecC-Cc--EEEEeccC
Q 001318 1046 EPNEFALGLSD-GG--VHVFEPLE 1066 (1101)
Q Consensus 1046 d~~~l~s~~~d-g~--v~vW~~~~ 1066 (1101)
||+.|+....+ +. +.+.++..
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 67776655443 33 55555533
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=1e-07 Score=93.85 Aligned_cols=224 Identities=16% Similarity=0.212 Sum_probs=142.1
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc--eeeeeeeeccccC------------CeeEEEEcCCCCeEEEE
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVI 470 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~------------~V~~~~~s~d~~~~~l~ 470 (1101)
....-|+++.|...|.||++|...|.|.+|.-+... ..+-+.++++|.. .|..+.|..++..-.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345689999999999999999999999999766432 2222334555543 48889998776554677
Q ss_pred EecCCCcEEEEeCCCCce-------------------------------------E-----EEe-cCcccCeEEEeeeec
Q 001318 471 TCGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHK 507 (1101)
Q Consensus 471 s~~~d~~i~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~v~~~~~ 507 (1101)
..+.|++|++|.+..... + +.. ..|...++++.|.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-- 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-- 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence 778899999998754300 0 001 2466667777764
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCC
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDF 583 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg 583 (1101)
.|.+.++++ .|=.|.+|+++-......+ ..+... .-...++...|+|.. +.+...+..|
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nme----------------eLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNME----------------ELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHH----------------HHHHHHhhcccCHhHcceEEEecCCC
Confidence 443556554 4788999988754433221 111110 000123333444433 4566678899
Q ss_pred cEEEEECCCCce------eE--EEcCC------CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 584 SIKFWDMDSVQL------LT--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 584 ~i~iwd~~~~~~------~~--~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
.|++-|++.... +. .+.+. +-...|..+.|+++|+++++-+. -+|++||+...+.++.++.-|.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 999999974221 11 11111 11235778999999999987764 7999999988877777664443
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=1.7e-08 Score=110.34 Aligned_cols=257 Identities=12% Similarity=0.176 Sum_probs=165.1
Q ss_pred CcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEE
Q 001318 347 SPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 424 (1101)
Q Consensus 347 ~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 424 (1101)
.|..+.|||.-. .+-++......-.||++.....-. ..-++.+|...|+.+.|.| .-..||+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCcceee
Confidence 355566665321 123344444566788876433221 1115789999999999999 5668999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVC 503 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~ 503 (1101)
++.|..|..||+.+... .+.....-......++|+--.. .++..+..+.|.+||.+.| .++..+++|...|+.+.
T Consensus 133 csvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred ccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHH
Confidence 99999999999998653 3333444446678899987776 3666677788999999876 56788999999999998
Q ss_pred eeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 504 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 504 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
|..... ..+.+++.||+|++||.+......... ....++..-.+.|-|.-. ++-+...++.+..-.-+
T Consensus 209 fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~----------~~mp~~G~n~v~~~~c~ 277 (1081)
T KOG0309|consen 209 FNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY----------CIMPMVGGNMVPQLRCE 277 (1081)
T ss_pred Hhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee----------EeccccCCeeeeecccc
Confidence 864433 368899999999999998654433222 223345555555555411 11111111222222223
Q ss_pred CcEEEEECCC-CceeEEEcCCCCCCCcCeEEEcc----------CCCEEEEEeCCCcEEEEEecC
Q 001318 583 FSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 583 g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.....|+..+ .++++++.+|.. .|....|-. ..-.|++-+.|..+++|-+.+
T Consensus 278 n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 278 NSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred chhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3445565544 357888887654 454443322 123799999999999998764
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=1.9e-06 Score=85.50 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=136.3
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCc---ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGH---SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h---~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
++.+. +|++||+- .|..|.|-..++. .++.+.+-. ...-..++||||+.+||.+...|+|+++|+.+.+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 5777777665441 233333222 23356799999999999999999999999987443221
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCC-------cEEEEEeCCeEEEEEcCCc-----eeeeeccCCC-CCCCeeEEEEcCC
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD 993 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg-------~~la~~~d~~v~vwd~~~~-----~~~~~~~~~~-h~~~i~~l~~spd 993 (1101)
.......+ .....|..+.|-+.. ++|+...+|.++-|-+..+ +.-..+.... +...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11111111 112467777776543 4566688888888876332 2333333323 3778999999999
Q ss_pred CCEEEEEEc----C-------CeEEEEEcCCceeeeecCCC---------------------cccCCCCCCCCccceEEE
Q 001318 994 SQLVYACFL----D-------ATVCVFSAANLKLRCRINPS---------------------AYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 994 g~~l~s~s~----d-------g~v~vwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~i~ 1041 (1101)
.++|++|+. | .-+..|.+-++....+.-.. -+...+.....|+ .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998877762 1 13677877665443321100 0011111122344 677
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC--ccccCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1074 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~--~~~~~~ 1074 (1101)
-+| ||..||+...+|.|.+|++++-. +.|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 788 78999999999999999998876 666653
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.5e-06 Score=97.80 Aligned_cols=156 Identities=9% Similarity=0.003 Sum_probs=98.7
Q ss_pred CcEEEEEecCCCeEEEEEec---CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+....|||||+++++..+. +..|.++|+.+++... +....+.+...+|||||+.|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEEE
Confidence 77889999999964554333 3479999998887643 223455667788999999887
Q ss_pred EEE-c--CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-CcEEEEeCCCCceEEEecCcccCe
Q 001318 424 VAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~-~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
... . +..|.++|+.+++..+ +..+........|+|||+.+++.+...+ ..|.+.|+.+|+..+.... ...
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 643 2 3568888988876332 3333333445689999997544443222 2688889888776443321 111
Q ss_pred EEEeeeecCCccEEEEEecC---------CcEEEEecCCCC
Q 001318 500 YSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 531 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~ 531 (1101)
...| +++|+.++..+.. ..|.+.|+.++.
T Consensus 323 -~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 323 -NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred -CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1355 5666777666543 256666766543
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=4.6e-06 Score=94.61 Aligned_cols=309 Identities=10% Similarity=0.051 Sum_probs=171.5
Q ss_pred EEEEecCCCcEEEEeCCCCceEEEecCcc--cCeE-----EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC
Q 001318 468 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 540 (1101)
.++.++.++.+.-+|..+|+.+....-.. .... .+.-.+.-.+..++.++.+|.+..+|..+++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 46667778899999999999887654221 0000 0000011122467778889999999999988877665432
Q ss_pred CceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCC---cCeEEEccCC
Q 001318 541 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG 617 (1101)
Q Consensus 541 ~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~ 617 (1101)
....+-. + .+..++.+..++.|+.+|..+|+.+..+........ ..+... .+
T Consensus 151 ~~~ssP~---------------------v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPV---------------------V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCE---------------------E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 2100000 0 123577778899999999999999988864321000 011111 23
Q ss_pred CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccc
Q 001318 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 697 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1101)
..++.++.+|.+..+|..+|....+ ...... .
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~---------------~-------------------------------- 237 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQP---------------T-------------------------------- 237 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhhe-eccccC---------------C--------------------------------
Confidence 4577778889999999888833221 100000 0
Q ss_pred ccCccceeeccCCCcc-eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCC
Q 001318 698 LADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 776 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 776 (1101)
+ . ..+ +++++ ...++ + .+..++.++.+|.+..+|..+++
T Consensus 238 ---~------~--~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~----- 277 (394)
T PRK11138 238 ---G------A--TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ----- 277 (394)
T ss_pred ---C------c--cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----
Confidence 0 0 000 00000 00010 0 12345556666776666653221
Q ss_pred ceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEE
Q 001318 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAF 854 (1101)
Q Consensus 777 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~ 854 (1101)
.+|....+. ...+.. ++..++.++ +|.+..+|..+++.+....... ....+..+
T Consensus 278 --------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 278 --------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred --------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 134322110 111222 344555555 8999999999988765443211 12233333
Q ss_pred ecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE-EEEcCCCCEEEEEeCCCceEEEeC
Q 001318 855 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 855 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
. + .+|+.++.||.|++.|..+|+.+.+.+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 334 ~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 Y--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3 3 36677899999999999999988776543333332 222 2457888899999887764
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.2e-06 Score=84.89 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
..+||.|+ .|...+|...+.+.... -..+...|+-+.-.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34778876 79999999986544322 23333333221111111234556788889999888755433322211123889
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 973 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~ 973 (1101)
+++++|++++++.+....|..|.++.............. ...-.+..|+.....+|+ ..||.+.|||+......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999999999999999999999864432222111111 123478899999999999 59999999999876543
Q ss_pred eec---cCCCCCCCeeEEEEcCCCC--EEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 974 KQW---VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 974 ~~~---~~~~h~~~i~~l~~spdg~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
... ....|.+.+..+.||+-|. +|+..-.-+.+.|-|+++++-...+.+....-..|....+. .-.|+. ++.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~ 315 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE 315 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence 222 1235899999999998665 34444456789999999998888776544332233333344 566665 344
Q ss_pred EEEEEecCCcEEEEeccCC
Q 001318 1049 EFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~ 1067 (1101)
.+.+...+ .+.-|++...
T Consensus 316 s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred ccccccch-hhheeecccc
Confidence 44444433 3456766543
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=1.6e-06 Score=91.12 Aligned_cols=224 Identities=14% Similarity=0.114 Sum_probs=138.5
Q ss_pred CCeEEEEECCCCceeeEecCC--CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC
Q 001318 825 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
+|.|..||..+|+.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+.+... .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 578999999999998877531 122222233 2 345666678999999999999998877654 222222122 2455
Q ss_pred EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCC
Q 001318 903 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 903 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
.++.++.|+.+..+|..+|+............. ..........++..++++ .++.|..+|+.+|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 666677888999999999886443211111110 011222223336666664 599999999999999877654221
Q ss_pred C--C------CeeEEEEcCCCCEEEEEEcCCe-EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 982 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 982 ~--~------~i~~l~~spdg~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
. . .+..-.+..++ .++.++.++. +.+ |+.+++.+-... ..+ .. . .... ++..|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence 1 1 12222333345 6666777775 555 999999663222 111 11 1 1234 4577887
Q ss_pred EecCCcEEEEeccCCCcccc
Q 001318 1053 GLSDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~~~~~ 1072 (1101)
++.++.|..||+.+|+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 77999999999999998774
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=1.4e-05 Score=82.34 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=140.5
Q ss_pred CeeEEEEec-CCCEEEEEe-CC-eEEEEECCCCceeeEecCCCCCe--EEEEEecCCCcEEEEEe-----ccCeEEEEEe
Q 001318 807 AVPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGM-----DDSSIQIYNV 876 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~-----~dg~v~vwd~ 876 (1101)
....++.+| +...++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|++.- ..|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345688888 555666666 44 48999999999988887655443 2478999 888888764 3579999999
Q ss_pred e-cceEeeeecCcccCeeEEEEcCCCCEEEEEeC------------------CCceEEEeCCCcccccceeeecCCCCCC
Q 001318 877 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 877 ~-~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
. +.+.+..+..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+......+.. ..+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~- 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ- 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence 9 67788888877655667889999988876632 1234445555555333222110 1122
Q ss_pred CCCCCeEEEEcCCCcEEEEE-eCC-------eEEEEEcCCceeeeeccC-----CCCCCCeeEEEEcCCCCEEEEEE-cC
Q 001318 938 TAQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACF-LD 1003 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~~-~d~-------~v~vwd~~~~~~~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s-~d 1003 (1101)
.+|..+++.++|..++.. ..+ -|.+++.... +..+.. ..-...|-+|+++++|.++++.| .-
T Consensus 163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 479999999999877763 222 2444443332 222211 12256899999999999876555 66
Q ss_pred CeEEEEEcCCceeeeecC
Q 001318 1004 ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1004 g~v~vwd~~~~~~~~~~~ 1021 (1101)
+.+.+||..+++++....
T Consensus 239 g~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CEEEEEECCCCCEeeccc
Confidence 789999999999997766
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=7.5e-06 Score=92.85 Aligned_cols=211 Identities=9% Similarity=0.003 Sum_probs=122.1
Q ss_pred CCeEEEEECCCCceeeEecCCCCC-----eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc-------Ce
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI 892 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-------~V 892 (1101)
++.|.-+|.++|+.+..+...... ..+.... ++ .++.++.+|.+..+|..+|+.+-....... ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 667777777777776665432111 0111222 23 456677889999999988876544321100 01
Q ss_pred eEEEEcC--CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc
Q 001318 893 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 970 (1101)
Q Consensus 893 ~~l~~s~--dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~ 970 (1101)
..+.-+| .+..++.++.++.+..+|..+|+..-... .+ ....+.. .+++.++...++.+..+|..++
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 24567777789999999999886533221 11 1111221 2344444478899999999999
Q ss_pred eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 971 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 971 ~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. ...+. +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~---~-~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS---G-FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC---c-cee-CCEEE---CCEE
Confidence 7754332111 111222222 255677889999999999999999887662 111 0 110 11121 3578
Q ss_pred EEEecCCcEEEEec
Q 001318 1051 ALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1051 ~s~~~dg~v~vW~~ 1064 (1101)
+.++.||.|+.+++
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88899999998875
No 298
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=7.3e-07 Score=99.35 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=93.9
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
.+++++|+|..- +|+.|-.-|.+.+|...+.+... +...|..+|..+.||++|..|.++.
T Consensus 61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ht-------------------v~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHT-------------------VVETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred ehhhhccChHHH-HHhhccccceeEEEecCCceeee-------------------eccCCCCCceeEEecCCCCeEEEcC
Confidence 356699999876 69999999999999988765533 4678999999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeecccc--CCe--eEEEEcCCCCeE----EEEEecCCCcEE-EEeCCCCceEEEecCccc
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHV--GGV--NDIAFSHPNKQL----CVITCGDDKTIK-VWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~--~~V--~~~~~s~d~~~~----~l~s~~~d~~i~-iwd~~~~~~~~~~~~h~~ 497 (1101)
.-|.|.+|...--..+... .+-.|. ..+ .|...++++... ..+..++++-+- .++++....-+... |
T Consensus 121 ~~g~v~lwr~d~~g~~q~~-~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-- 196 (1416)
T KOG3617|consen 121 NPGSVHLWRYDVIGEIQTS-NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-- 196 (1416)
T ss_pred CCceeEEEEeeeccccccc-hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c--
Confidence 9999999988733223211 111222 223 444456663210 122333333332 33333211111111 1
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
+..++|..++.++.+|+|+--|-
T Consensus 197 -------sgv~~g~~F~~~~~~GtVyyvdq 219 (1416)
T KOG3617|consen 197 -------SGVPKGTEFLFAGKSGTVYYVDQ 219 (1416)
T ss_pred -------cCCCCCcEEEEEcCCceEEEEcC
Confidence 12356677888888898876653
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=2.2e-07 Score=91.50 Aligned_cols=258 Identities=12% Similarity=0.204 Sum_probs=161.3
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCc-----eeeEecCCCC------------CeEEEEEecCCC-cEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-----TMATFMPPPP------------AATFLAFHPQDN-NIIAI 864 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-----~~~~~~~~~~------------~i~~l~~sp~d~-~~las 864 (1101)
....|+++.|...|.|+++|. .|.|.+|...... ....|++|.. .|..+.|..+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 456799999999999999999 7999999876432 1233555542 477787765333 35556
Q ss_pred EeccCeEEEEEeecce-------------------------------------Ee----e--eecCcccCeeEEEEcCCC
Q 001318 865 GMDDSSIQIYNVRVDE-------------------------------------VK----S--KLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 865 g~~dg~v~vwd~~~~~-------------------------------------~~----~--~l~~h~~~V~~l~~s~dg 901 (1101)
.+.|.+|++|.+.... .+ . .-..|.-.|+++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 6789999999874320 00 0 013466778999999998
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCC-CCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCcee------
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLEC------ 972 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~------ 972 (1101)
..++++. |-.|.+|+++-....... +.+.... .....-|++..|+|....+.. ++.|.|++-|+.....
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888865 677999998754322111 1111110 000124678889997654443 6889999999873211
Q ss_pred eeeccCC--------CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcc----cCCCCCCCCcc-ce
Q 001318 973 VKQWVPR--------ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-KLRCRINPSAY----LPAGVSSSNVH-PL 1038 (1101)
Q Consensus 973 ~~~~~~~--------~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~----~~~~~~~~~v~-~~ 1038 (1101)
+.....+ +-...|..+.|+++|+++++-+ --+|++||+... .++.++..+.. +.+-..+..++ -.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1111111 1245788999999999999765 458999998654 45554431110 00000111121 23
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
.+.|+. |.+.+.+|+..+..-++-..
T Consensus 342 eisfSg-d~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 342 EISFSG-DDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEecC-Ccccccccccccceeeeccc
Confidence 688888 45788888888877777643
No 300
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=1.6e-07 Score=96.69 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=106.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeEEEEEc
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 967 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v~vwd~ 967 (1101)
...+..++++++||.+..+....++++..... ...+........ .-+++.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 34456677788888777777766776665433 222232222221 2345555555544444 24456777777
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~ 1047 (1101)
..+.+...+ ||-..++.++||||+++++++..|..|+|-.+..-..+..+- -||..- |. .++.-+ +
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH~eF-VS--~isl~~--~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGHKEF-VS--TISLTD--N 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------cccHhh-ee--eeeecc--C
Confidence 666655443 899999999999999999999999999998887655554433 244333 55 455443 5
Q ss_pred CEEEEEecCCcEEEEeccCCC
Q 001318 1048 NEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1048 ~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.|+++|.|++|++||+.+|+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 679999999999999999998
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.71 E-value=4.6e-06 Score=85.79 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=126.6
Q ss_pred EEEEecCCCEEEEEe------CCeEEEEECC-CCceeeEecCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001318 810 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 866 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---------------- 866 (1101)
.-+||+||++|++.. .|.|-|||.. +.+.+.++..+.-.--.+.+.| |++.|+++-
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 478999999999874 2679999999 7778888887766667788999 887777663
Q ss_pred --ccCeEEEEEeecceEeee--e--cCcccCeeEEEEcCCCCEEEEEeCCCc-------eEEEeCCCcccccceeeecCC
Q 001318 867 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 867 --~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~D~~-------v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
.+-++..-|..+|+++.+ + ..|...|..+++.++|..++-.-..+. |-+++-.. . ...+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence 122455567788888877 4 348888999999999876665433321 33333222 1 11111111
Q ss_pred CC-CCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe
Q 001318 934 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1005 (1101)
Q Consensus 934 ~~-~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~ 1005 (1101)
.. ....+.+-+++++++|.+++++ .-+.+.+||..+++.+.... -..+..++-.+++ ++++.+ .|.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence 00 0112478899999999988874 66799999999999988765 3456777777777 555544 444
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=2.6e-06 Score=82.64 Aligned_cols=192 Identities=9% Similarity=-0.047 Sum_probs=129.1
Q ss_pred EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEe-e-eecCcccCeeEEE
Q 001318 821 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVK-S-KLKGHSKRITGLA 896 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~-~-~l~~h~~~V~~l~ 896 (1101)
..++ |.++++++++-+.......-..-.+.++++++ |++++++.++...|..|.+... +.+ . ....-++.=.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3444 78888888765443333221123388999999 9999999999999999998753 222 2 2233344456789
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc--EEEEE-eCCeEEEEEcCCceee
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--HFLVV-HETQLAIFETTKLECV 973 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~la~~-~d~~v~vwd~~~~~~~ 973 (1101)
|+.....+|++..||++.|||++.........-..... +.+.++.+.|++.|. +|..+ .-+.+.+.|+.++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~---hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH---HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCC---CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99999999999999999999998743222111122222 346899999998664 33333 6678999999998765
Q ss_pred eeccCC-----CC-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 974 KQWVPR-----ES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 974 ~~~~~~-----~h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
..+.+. .| ...|+.-.|+.++.-+.+.+++ .+.=|++.+....
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSRF 336 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccch-hhheeecccccee
Confidence 544321 23 3348888999988887777655 4556776655433
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.65 E-value=2.1e-05 Score=82.79 Aligned_cols=219 Identities=14% Similarity=0.079 Sum_probs=137.0
Q ss_pred eEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 809 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 809 ~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.+++|.+ ++.++++-- .+.|+.|+..++.... +.... ...+++...+++++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 4678888 555555544 7899999998865533 22122 7788888326666554 44 455666988875443332
Q ss_pred C-----cccCeeEEEEcCCCCEEEEEeCC--------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 887 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 887 ~-----h~~~V~~l~~s~dg~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
. .....+.+++.++|++.++.... +.|..++.. ++. ....... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988876544 345555555 221 1111111 13478999999998
Q ss_pred EEE--EeCCeEEEEEcCCcee----eeec-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCccc
Q 001318 954 FLV--VHETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1026 (1101)
Q Consensus 954 la~--~~d~~v~vwd~~~~~~----~~~~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~ 1026 (1101)
|.+ +..+.|..|++..... ...+ ......+..-.+++..+|++.++....+.|.++|.+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 876 3677899998853221 1212 111212348889999999998888889999999987 99988887 4
Q ss_pred CCCCCCCCccceEEEEeCCCCCEEEEE
Q 001318 1027 PAGVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 1027 ~~~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
|. -.+.+++|...+.+.|+..
T Consensus 223 p~------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 PV------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SS------SSEEEEEEESTTSSEEEEE
T ss_pred CC------CCEEEEEEECCCCCEEEEE
Confidence 31 1355899964454555443
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.9e-07 Score=87.89 Aligned_cols=210 Identities=12% Similarity=0.173 Sum_probs=127.4
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 427 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 427 (1101)
|+.+.|+-+- .|+++..++.+......++.+.. .|+-.....+ ...+..|.++-.+-+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~--~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDP--FKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCc--eeeeeccCCCCCcccccccCCceEecCC
Confidence 6666666554 58888888888887766654433 2222222211 2234455555555555667888999999
Q ss_pred CCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEec-----CCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 428 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
||.+.+.+.+.- ++...... .|.+ -.+.+....+. .+.+++ .-+..++|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 22111111 1221 12222333444 333332 1234556665543332211122334888
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCcee-eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
+|-+|... +.+++|+.||.+-+||++...... .+..|...+..+.|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99877655 688999999999999999864332 3456666777777766543 5799999
Q ss_pred CCCcEEEEECCC
Q 001318 581 DDFSIKFWDMDS 592 (1101)
Q Consensus 581 ~dg~i~iwd~~~ 592 (1101)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999864
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=9.6e-07 Score=85.28 Aligned_cols=150 Identities=16% Similarity=0.225 Sum_probs=98.4
Q ss_pred cCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--
Q 001318 747 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-- 824 (1101)
Q Consensus 747 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-- 824 (1101)
+-.++.+++++.||.+.+++.+. .+....+. .. -...-.+.++-..++++.++.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i---------------~~--------~~~~~as~~~~~~~~~i~s~~~g 153 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDK-DLALMSRI---------------PS--------IHSGSASRKICRHGNSILSGGCG 153 (319)
T ss_pred cccCCceEecCCCceEEEEechH-HHhhhhhc---------------cc--------ccccccccceeecccEEecCCcc
Confidence 33456689999999999887643 11000000 00 011111223334445555443
Q ss_pred ----CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-eeecCcccCeeEEEEcC
Q 001318 825 ----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 825 ----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~ 899 (1101)
-+..+.|++...+....-......|++++-+|...++++.|+.||.+-+||.+..... ..+..|..+|+.+-|+|
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence 2446666665333222212223349999999977789999999999999999887533 45688999999999998
Q ss_pred -CCCEEEEEeCCCceEEEeCCC
Q 001318 900 -ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 900 -dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++..|++++.||.+.-||..+
T Consensus 234 k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCchheeEecCCCcEEEEcCCC
Confidence 568999999999999999876
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.8e-07 Score=93.87 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=120.1
Q ss_pred EEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCce
Q 001318 362 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE 441 (1101)
Q Consensus 362 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~ 441 (1101)
++.+.+-.|-+-|++||-... +. -.+.|.++.|.-.+.++..|+.+|.|...|+..+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred ecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence 444556788999999886533 22 567899999999999999999999999999986411
Q ss_pred --eeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCce---EEEecCcccCeEEEeeeecCCccEEEE
Q 001318 442 --VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFS 515 (1101)
Q Consensus 442 --~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s 515 (1101)
..+...+ -|...|+++..-. +++ +|++.+.+|.|++||.+--++ +.+++||.+.-.-+-++.++....+++
T Consensus 287 G~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 287 GNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred CCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence 1111122 4899999998877 455 789999999999999987666 889999977666565655666678999
Q ss_pred EecCCcEEEEecCCCCceeeecCCC
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~ 540 (1101)
++.|...|+|.++.+..+.+++.+.
T Consensus 364 ~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccCeeEEEEEecccCceeeccCCCC
Confidence 9999999999999887776655443
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.58 E-value=1e-05 Score=90.99 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=116.9
Q ss_pred EecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C-eEEEEEeecceEeeeec
Q 001318 813 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 813 ~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~~~~~~l~ 886 (1101)
+++||+.+...+ .+.+.+.|.++.+...++.- .+....+++++ +++++++.+.+ | ++..-+......+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456777665444 47788999998877776653 23456789999 88888777532 1 22222221111111110
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 963 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~ 963 (1101)
- ..+ -++.++|++...+ +++|.+.|..+..... .....++-+. ....+.+||||++++++ .+.++.
T Consensus 278 i--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred h--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 0 000 1334578876653 6789999988710000 1122222232 45889999999999994 678999
Q ss_pred EEEcCCcee------------eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 964 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 964 vwd~~~~~~------------~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
|+|+.+.+. +.+... .......+|.++|....+-..|..|..||+.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988653 333322 34556789999999888889999999999987
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.0002 Score=75.42 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=141.1
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe-cCCCeEEEEEc
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 427 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 427 (1101)
.+++|.+....|+++--..+.|..|+..+++.... ... ....+++. ++|. |+.+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~-l~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGR-LYVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSE-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCE-EEEEEc
Confidence 46789985445788877889999999998765431 111 27778888 5654 444555
Q ss_pred CCeEEEEEccCCceeeeeeeec--c-ccCCeeEEEEcCCCCeEEEEEecCC--------CcEEEEeCCCCceEEEecCcc
Q 001318 428 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 428 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~~~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
++ +.++|..+++. ..+.... . .....+.+++.++|+ +.++.... +.|..++.. ++...... ..
T Consensus 60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL 133 (246)
T ss_dssp TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence 44 55559988854 3333332 2 345789999999999 56665433 457777766 55433333 45
Q ss_pred cCeEEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc--CceeEEEEcCCC
Q 001318 497 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK 573 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~ 573 (1101)
...+.++|++ +++.| ++-+..+.|..++++.......-. +.+..... +....++++.+|
T Consensus 134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred ccccceEECC--cchheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence 5678899854 45555 466778888888886543311000 01100000 124456777777
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEe
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 624 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 624 (1101)
+..++....+.|.+++.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 777777789999999987 888888876522 68899994 5766666544
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=5.4e-06 Score=86.40 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=141.7
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeC
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 483 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~ 483 (1101)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|...|.+++.+-++. ++.|.+. |+.++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 467777776544 467999999999999998664222333334678999999999999998 7889777 999999999
Q ss_pred CCCceEEEec--CcccCeEEEeeeecCC-c--cEEEEEecCCcEEEEecCCCCcee--eecCCCCceeEEEEccCCceEE
Q 001318 484 TNGAKQYIFE--GHEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 484 ~~~~~~~~~~--~h~~~v~~v~~~~~~~-~--~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
++-..+.-++ --.+.+ +|..++. - .+-++.-.++.+.++|-....+.. .-..|..+|.
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~------------ 148 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK------------ 148 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE------------
Confidence 8765543222 122222 2222221 1 233344457889999876544322 2233444444
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC------CceeEEEcC-------CCCCCCcCeEEEccCCCEEEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSIDA-------DGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
++.+.+.+..+++....|.|.-|..+. .+....++. ........++.|+|+|..+.+-
T Consensus 149 ---------~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 149 ---------KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ---------EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 444555556788888899999999873 111112211 1222346789999999999999
Q ss_pred eCCCcEEEEEecCccccccccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
..|..|+++...+| +.++.+.
T Consensus 220 ~~DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred CcccEEEEEEeccc-hhhhhhh
Confidence 99999999999998 6666554
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=1.2e-07 Score=105.91 Aligned_cols=199 Identities=17% Similarity=0.206 Sum_probs=144.5
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC--ce
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL 913 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--~v 913 (1101)
.+..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|.++|+.+.-+.||..+.+.+.-. -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 889999999999999999999999999999999999999999998887665433 46
Q ss_pred EEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCC--CCCCCeeEEEE
Q 001318 914 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF 990 (1101)
Q Consensus 914 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~--~h~~~i~~l~~ 990 (1101)
.+|++...- .....+ ..-.++.|+.....-+.+ ......+||+.++....++... +....-.+..|
T Consensus 1170 aLW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799987621 111111 244778888875555554 4467889999999877664321 12334478899
Q ss_pred cCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 991 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 991 spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
||+..+++ .|| .+||+...+.+++|.....-. .=.|+| .|.-++.-+ .|||+.+-+
T Consensus 1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccC-CCceEEeec-----hhhhhHHHH
Confidence 99999887 566 479999888887776322111 124777 456666655 577776654
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=2.2e-05 Score=82.54 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=137.4
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 446 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~ 446 (1101)
+|.|..||..+|+.+-...++ .. .....+. ..+++.++++++.++.+..||..+|+.+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~-~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PG-IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SS-CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CC-CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee
Confidence 588999999999887653221 01 1122211 34467788888999999999999998765332
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCccc---CeEEEeeeecCCccEEEEEecCCcE
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 522 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~v~~~~~~~~~~l~s~~~dg~i 522 (1101)
+.+ .+.......++. ++.++.++.++.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 64 -~~~---~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 64 -LPG---PISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp -CSS---CGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred -ccc---cccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 222 111112223343 555567789999999999999874 32211 1111222112 4678888889999
Q ss_pred EEEecCCCCceeeecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 523 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
..+|..+++.+.......... ..+.... ....-.+..++ .++.++.++.+..+|+.+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988877665533211 1000000 01111111123 57777777764444999998765433
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
... +.. ....++..|++++.++.|..||..+++.
T Consensus 201 ~~~---~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 201 ISG---IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CCC---ccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 211 222 2456788888888999999999999843
No 312
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.52 E-value=2.6e-07 Score=87.77 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCChHHHHHHhcccc-cccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhh
Q 001318 25 MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT 103 (1101)
Q Consensus 25 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~ 103 (1101)
...++++|++|+++.|++.+.... .+-.. . ..+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-N-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-C-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 577899999999999999998762 22111 1 23899999999999999999999999999999776654688899999
Q ss_pred hhhcccCcch--hhhhhccCCchHHHHHHHHHHhhcccCCccccccccCCCCC-hHHHHHHHHHhHHHH
Q 001318 104 QLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 169 (1101)
Q Consensus 104 ~ll~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 169 (1101)
.+|...+..+ ...+..+- ....|++|.+.+.+.+-...- +| ...|+.++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 9998887665 23333332 236789999998886655333 44 466888888876543
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.52 E-value=0.00064 Score=66.35 Aligned_cols=147 Identities=9% Similarity=0.001 Sum_probs=96.8
Q ss_pred EEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec
Q 001318 458 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 537 (1101)
Q Consensus 458 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 537 (1101)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...+.+-+.. -|++++.|+..|.+++.+..++++...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 344456655 78889999999999999999876432 22334443332 12579999999999999999987776554
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 617 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 617 (1101)
.... .-......+++..+..++.|++.+..|..+..++...+..+. ...+-++.|..
T Consensus 91 ~~~~---------------------vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILET---------------------VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhh---------------------hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 3221 001123456677899999999999999999999988775544 23344555623
Q ss_pred CEEEEEeCCCcEEEE
Q 001318 618 CLLAVSTNDNGIKIL 632 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw 632 (1101)
..|..+...|.+.--
T Consensus 148 ~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAV 162 (354)
T ss_pred ceEEEEeccceEEEE
Confidence 334444444554433
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=9.9e-05 Score=77.03 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=129.1
Q ss_pred EEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee-cceEeee-
Q 001318 810 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 884 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~~- 884 (1101)
.++++.||+++++.. .-.|.|.|+...+.+.++... .+..+- |..++-+.+-|.||.+.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357778888887765 467999999998888877622 222222 2234557788889999988887 3544322
Q ss_pred ---ecCcccCe-eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcEEEE
Q 001318 885 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 885 ---l~~h~~~V-~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
|..-..++ ..-+++.++..++-.+.+|.|+--|+................ ....++.-.-+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22112222 233445555566667788888888877655333333332210 1112245567899887766665
Q ss_pred -E---eCC-------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 957 -V---HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 -~---~d~-------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
- .++ .|.+||+.+++.+..+.. ..++.+|++|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 699999999999999875 34788999999888 555444 57899999999999998877
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=5.4e-07 Score=90.48 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=111.7
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-----eEeeeecCcccCee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT 893 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~~h~~~V~ 893 (1101)
.+++|.+-.|-+-|++++... .|. ..+.|.++.|.. .+.++..|+.+|.|.++|++.+ .+...+. |.+.|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 345566788999999886543 333 566799999997 7889999999999999999864 3444444 888999
Q ss_pred EEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee
Q 001318 894 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~ 972 (1101)
++..-. ++++|++.+.+|+|++||.+-.+... -+....||..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN----------------------------------- 345 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN----------------------------------- 345 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence 988766 78899999999999999987632111 1222222211
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
...-.-+.+.+....++++++|...|||.+..|.+++++..
T Consensus 346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 11222233456677888899999999999999999999883
No 316
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.46 E-value=0.0077 Score=70.28 Aligned_cols=594 Identities=11% Similarity=0.093 Sum_probs=290.6
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
...++..+-..|+..-++| ++.+||.-|.=.+-.+.+....... ....+ . -..-++|..++.-.+
T Consensus 300 ve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy----------~~ile--t-~~NLgPI~Dm~Vvd~ 364 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSY----------VVILE--T-FVNLGPIVDMCVVDL 364 (1096)
T ss_pred EEecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCch----------hhhhh--h-cccccceeeEEEEec
Confidence 3355666777888888888 5888988776555555443221100 00000 0 122357888877652
Q ss_pred ----CCeEEEEE---cCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCeEEEEEecCCCcEEEEeCCCCceE
Q 001318 419 ----GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQ 489 (1101)
Q Consensus 419 ----g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 489 (1101)
+..++|++ .||++++..-.-+-...-...+.| -..++.+. +.+.-.. +++.+-.+ .-++..+...-..
T Consensus 365 d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee 441 (1096)
T KOG1897|consen 365 DRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEE 441 (1096)
T ss_pred cccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEE
Confidence 23555553 589999986543322222223555 45567776 4443222 33332222 2233433222111
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 569 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 569 (1101)
....+.......+..+ .-+++.|+=.. ...||+++-. .....+..+.+. .+...
T Consensus 442 ~~~~gf~~~~~Tif~S-~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~----------------------ti~~~ 495 (1096)
T KOG1897|consen 442 TEDPGFSTDEQTIFCS-TINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKI----------------------TIGVV 495 (1096)
T ss_pred eccccccccCceEEEE-ccCCceEEEEe-cccEEEEcch--hhhhcccCCCce----------------------EEEEE
Confidence 1111211112222211 11222222222 2345555433 122222222221 11112
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC--C----CEEEEEeCCCcEEEEEecCccccccc
Q 001318 570 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 570 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-.......+..
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 2222346777777777777777665 333322333346889999973 2 27888887766655533222111111
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccC-
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS- 722 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~- 722 (1101)
..-. . .+.|-. ... ..+..+..+|.++..||.+.-|.+....
T Consensus 575 ~~l~-~-----------~~iPRS-------------------Il~------~~~e~d~~yLlvalgdG~l~~fv~d~~tg 617 (1096)
T KOG1897|consen 575 EQLS-G-----------EIIPRS-------------------ILL------TTFEGDIHYLLVALGDGALLYFVLDINTG 617 (1096)
T ss_pred eccC-C-----------Cccchh-------------------eee------EEeeccceEEEEEcCCceEEEEEEEcccc
Confidence 1000 0 000000 000 0112236788899999988766654322
Q ss_pred -CCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 723 -EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 723 -~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
.....+. .-...++.--.|+..++.-+.+.+|.-..+|.- .+++....+..
T Consensus 618 ~lsd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-----------------------n~kLv~spls~ 669 (1096)
T KOG1897|consen 618 QLSDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-----------------------NGKLVYSPLSL 669 (1096)
T ss_pred eEcccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-----------------------CCcEEEeccch
Confidence 1111100 113345555667666655555555544444432 11111100000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEecc-----------
Q 001318 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD----------- 868 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----------- 868 (1101)
..-..+..+.-..-...++++..+.+++.-+..-+. ++++. -......+++.+ ....+++.+.-
T Consensus 670 -kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee 746 (1096)
T KOG1897|consen 670 -KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEE 746 (1096)
T ss_pred -HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCc
Confidence 000011111111223467777777777777654332 23333 233456666665 44444443321
Q ss_pred ---CeEEEEEeecceEeeeecC--c--ccCeeEEEEcCC-CCEEEEEeC----------CCceEEEeCCCcccccceeee
Q 001318 869 ---SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 869 ---g~v~vwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-g~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
..++++|-.+.+.+...+- - .-.|.++.|..| +.++++|.. .|.|.|+.+......+...-.
T Consensus 747 ~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 747 YEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 2466777666554433211 1 123555668877 777877753 356777776652221111111
Q ss_pred cCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEE-
Q 001318 931 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF- 1009 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vw- 1009 (1101)
... +.+ .+..--...++++-+..|++|+..+.+.++.-. .|..++..+...-.|..+++|..=+.|.+-
T Consensus 827 ~v~------Gav--~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 827 VVK------GAV--YALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eec------cce--eehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 111 112 222233334555677899999999987666543 668889999999999999999877776664
Q ss_pred -EcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1010 -SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1010 -d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+-..|.+.-.-+ .+.| -+.+++.+-. ++.++-+..+|.+++-...+
T Consensus 897 y~~~eg~f~evAr--D~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 897 YKGDEGNFEEVAR--DYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EeccCCceEEeeh--hhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence 444444443222 2222 2333666664 45667777789998887654
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.5e-07 Score=63.05 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.1
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=4e-05 Score=90.31 Aligned_cols=277 Identities=10% Similarity=0.132 Sum_probs=157.0
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
...|.++.|..++..++.+...|.|.+-|..+ ...... ..-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence 36899999999999999999999988865432 211110 1146789999999999
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCC-----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccC
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR 891 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~ 891 (1101)
+.++..+.+...++...+...+....-+ .+....+-|-. ....+ -| ..|...-.+.... +......-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence 9999998544334444444444332211 11122222221 00000 00 0111111111100 001111112 22
Q ss_pred eeEEEEcCCCCEEEEE-----eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeE
Q 001318 892 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL 962 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~-----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v 962 (1101)
=+.|.|--||+++|+. ...+.|+|||-+. .. +...... .+.-.+++|-|.|.++++ .+|+.|
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~L------ns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-AL------NSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEecccc-hh------hcccCcc--cccccceeecCCCCeEeeeeecCCCCcE
Confidence 3569999999999873 2237899999873 21 1111111 123478999999999998 256679
Q ss_pred EEEEcCCceeeeeccC--CCCCCCeeEEEEcCCCCEEEE---EEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 963 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~s---~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
.+|.-+..+. ..+.. .....+|..++|+.++..|++ ......|++|-+.+.....+.. -..+.. .
T Consensus 269 vffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~-----~-- 338 (1265)
T KOG1920|consen 269 VFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK-----A-- 338 (1265)
T ss_pred EEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc-----c--
Confidence 9998764332 21111 122345999999999999987 4455569999988876433221 012211 1
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1038 LVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1038 ~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
-+.|+|.....+..-..+|...+.++
T Consensus 339 -~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 339 -LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -cccccCCCceeEEEEecCCcEEEEEE
Confidence 26777765555555556666555554
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=2.3e-05 Score=88.33 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=137.7
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeEecC------C---------CCCeE-----EEEEecCCCcEEEE-EeccCeE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAAT-----FLAFHPQDNNIIAI-GMDDSSI 871 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~-----~l~~sp~d~~~las-g~~dg~v 871 (1101)
.||+|+..-. +..|-..++...++-+.+.- | ...|. .+=++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 5888998887 45666666665554333221 1 11111 222445 5554432 2234677
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC---C-ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D---~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
.+.|..+.+...++.-- +.-..+.+++||+++++.+.+ + ++..-+.. +......+... ..-++
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~--e~d~~vvfni~----------~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--ERDWVVVFNIA----------RIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccc--cCceEEEEchH----------HHHHh
Confidence 77888877766655432 234567899999999888632 2 22222221 11100000000 01134
Q ss_pred cCCCcEEEEEeCCeEEEEEcCC-----ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCcee-----
Q 001318 948 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1016 (1101)
Q Consensus 948 s~dg~~la~~~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~----- 1016 (1101)
.++|++..+ .++.|.+.|..+ ...+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 557887665 467899999998 345554443 56789999999999976555 588999999988653
Q ss_pred -------eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 -------RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 -------~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+.+++ + | ..|+..+|.+ +|+...+..-|..|..||+.+
T Consensus 361 ~~~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 1 2 4477899988 678889999999999999987
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.2e-06 Score=88.08 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=151.3
Q ss_pred CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCC
Q 001318 845 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 920 (1101)
Q Consensus 845 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~ 920 (1101)
|...|+.+..+ -.+++.+++-||.++.|.-.. -+.+..+..|.+.|.+++.+-||.++.|.+. |..++++|+..
T Consensus 8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66777777666 467999999999999997543 2455667789999999999999999999887 99999999987
Q ss_pred cccccceeeecCCCCCCCCCCCeEEEEcCCC--cEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCE
Q 001318 921 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~ 996 (1101)
-......-+..+.+ -..+..++.. ..++++ .++.+.++|-....+.....-.-|..+|.++.+++-+..
T Consensus 86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 54332222222221 1222223321 244443 778999999877665444444568999999999999999
Q ss_pred EEEEEcCCeEEEEEcCC------ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 997 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++....|.|.-|..+. +++...++....+-.- -...-.+.++.|+| ++..+.+-+.|..|+++++.+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99999999999999873 2222222222211110 11113456899999 78999999999999999999998
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.35 E-value=0.0012 Score=78.43 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=146.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
..+..+.|..+.+.++.+..+|.|.+-|..+......-... ..|.+++||||+..++..+..+++.+-.- +- .++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cch
Confidence 36777778888888999999999999988776543332222 35899999999999999998888766432 11 111
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..-.-+...-. ....+..+....-.-+.....
T Consensus 144 ~E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 144 AEKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred hcccccccccc------------------------------------------------ccccceecccccceeeecchh
Confidence 11000000000 000111111111111111000
Q ss_pred CCCccccc---cccCccccccceEEEEEcCCCceEEeee-----cCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 722 SEPNQCRS---LRLPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 722 ~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
.....-.. -..........=+++.|-.||.++++.. ....|++||-. |.
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~ 232 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA 232 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence 00000000 0000001223345789999999888733 22788888753 11
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEECCCCc---eeeEecCCCCCeEEEEEecCCCcEEEE--
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAI-- 864 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~las-- 864 (1101)
+-.... ...+.-.+++|-|.|..+++-. |+.|.+|.....+ ..-.+.....++..++|+. ++.+||+
T Consensus 233 Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~ 308 (1265)
T KOG1920|consen 233 LNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT 308 (1265)
T ss_pred hhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence 110000 0223345789999999999863 5679999865321 1122333344589999999 8999998
Q ss_pred -EeccCeEEEEEeecce--EeeeecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEe
Q 001318 865 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS 917 (1101)
Q Consensus 865 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd 917 (1101)
......|++|-+.+.. +.+.+.-..... +.|+|-. ..|..-..+|...+++
T Consensus 309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 4555569999987642 223333222222 6677632 2233333455444444
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.35 E-value=6.1e-06 Score=93.56 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 894 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~ 894 (1101)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 444566666 778889999988887776655555665554 5689999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEEEeCCeEE
Q 001318 895 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 963 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~v~ 963 (1101)
+.. .|+.|+++|. |..|+|||++.-+.. .+++...+ ..-+.|.|. .+.++++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 6889999886 566899999884432 23333332 245677775 3334447888999
Q ss_pred EEEcCCce-e-eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 964 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 964 vwd~~~~~-~-~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
+-|..+.. . ............+..+++|++|..|+.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843321 1 11111123355699999999999999999999999997
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.1e-05 Score=90.63 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=133.2
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
..++|++++ +++++-|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+-+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457777776 4799999999999999975 333 444446554 56899999999999999999887653221
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCC-----CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
.-.. .++.+++++|| .+.+++|+...+.++.-.-.............++|.++.| .|.++|-++
T Consensus 109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1111 26789999998 5667775444477776443322222222344789999999 588999887
Q ss_pred cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1002 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1002 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
++| |+|||..+++.+..+++....+ ....++-.+.|.+ ...|+.| .--+|+|..++.+
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEecc
Confidence 665 9999999999998887544222 3335556788886 3466665 5667888888733
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.32 E-value=0.0019 Score=63.09 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=95.5
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
+..-+|.+.+++.|+..+.+.--|..+|+..-... + ...|.+-+.- -|++++.|+..|.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence 34456667789999999999999999998765311 1 1233332222 4788999999999
Q ss_pred EEEEEccCCceeeeeeeeccccCCee-EEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCC
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVN-DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN 509 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 509 (1101)
+++-+.++|.....+..+. .|. .....+++. ++..|+.|++.+.-|.++..++...+--.+...+-++.+ .+
T Consensus 75 lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~ 147 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GD 147 (354)
T ss_pred EEEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecC-CC
Confidence 9999999997665443332 221 223455777 799999999999999999999988764333222223322 13
Q ss_pred ccEEEEEecCCcEEE
Q 001318 510 IQFIFSTALDGKIKA 524 (1101)
Q Consensus 510 ~~~l~s~~~dg~i~~ 524 (1101)
+ .|+.+...|.+.-
T Consensus 148 ~-sly~a~t~G~vla 161 (354)
T KOG4649|consen 148 G-SLYAAITAGAVLA 161 (354)
T ss_pred c-eEEEEeccceEEE
Confidence 2 3444444455443
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.4e-05 Score=78.23 Aligned_cols=222 Identities=14% Similarity=0.188 Sum_probs=130.6
Q ss_pred cccCCCCCeEEEEEecCCC-eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
++.+|...|..++|||..+ +|..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6889999999999999776 78889999999999999976554 34555 89999999999876 8899999999999
Q ss_pred EeCCCCce-EEEecC--cccCeEEEeeee----cCCccEEEEEecCCcEEEEecCCCCc----eeeecCCCCceeEEEEc
Q 001318 481 WDATNGAK-QYIFEG--HEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 481 wd~~~~~~-~~~~~~--h~~~v~~v~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s 549 (1101)
+|++..+- +..+.+ ...+|..++..+ .+.|-+++.... .+.+|++..... ...+.. .+.+.++.+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~-pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEP-PGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCC-Ccceeeeeec
Confidence 99986542 222222 223343332111 011223333332 244565543211 111111 1122222222
Q ss_pred c----------------------------CCceEEe------ccccCc---eeEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001318 550 A----------------------------DGTRTYQ------GFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMD 591 (1101)
Q Consensus 550 ~----------------------------~~~~~~~------~~~~~~---~~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 591 (1101)
+ +|..+.. |..... -..+.-.++.++++. ++..+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 2 1111110 100000 011222334455554 5567889999999
Q ss_pred CCceeEEEcCCCCCCCcCeEEEcc-C-CCEEEEEeCCCcEEEEEec
Q 001318 592 SVQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iw~~~ 635 (1101)
+++.++++.... +|.+++... + +.+|++-+ |..++||..+
T Consensus 420 s~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 420 SFEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hhheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999997653 465555544 3 34565554 5688888654
No 326
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.23 E-value=9e-07 Score=68.43 Aligned_cols=53 Identities=32% Similarity=0.518 Sum_probs=42.8
Q ss_pred cHHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCH
Q 001318 24 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 77 (1101)
Q Consensus 24 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~ 77 (1101)
++..++++|++|+|++|++.+...........+ .+.|.|++|+|+|||+.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 377899999999999999999887433222222 49999999999999998765
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=7.2e-05 Score=84.91 Aligned_cols=203 Identities=14% Similarity=0.159 Sum_probs=129.6
Q ss_pred EEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCCEEEEEeCCCc-----eEEEeCCCccccc-
Q 001318 853 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 925 (1101)
Q Consensus 853 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s~s~D~~-----v~iwd~~~~~~~~- 925 (1101)
+|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |..+....+..+|++.+.|+. |+||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778999999999999887 345666778888777 555555445578999888765 8999998754333
Q ss_pred ceee---ecCCCCCC-CCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC--ceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 926 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 926 ~~~~---~~~~~~~~-~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..++ .+.....+ .+.++..++.|.+-+.+|+| .+|.|..+.-+- .+-.+....+....+|+.++|..|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 22221111 23578899999999999997 788888875322 11112211122378999999999999844
Q ss_pred EEEcCCeEEEEEcCCcee-eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 999 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
-+..-..|.+|.+....+ ++.+. +++..+. +.+|++..+. +++++ +..|.+++....+.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGP 247 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcce
Confidence 444566899999984331 22222 1222244 7777764332 43333 56788888875543
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=3.6e-06 Score=58.84 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=36.6
Q ss_pred CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 836 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 836 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
++++.++.+|...|++++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.16 E-value=0.0012 Score=76.89 Aligned_cols=211 Identities=12% Similarity=0.087 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeecc---ccCCe--eEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V--~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
+..+..++.++.|.-.|..+|+.+-....-.. +...+ ..++.. ++. .++.++.++.|.-+|.++|+.+..+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence 55677777889999999999886543211110 00011 011221 213 47778889999999999999998775
Q ss_pred CcccC-----eE-EEeeeecCCccEEEEEe---------cCCcEEEEecCCCCceeeecCCCCceeEEE-EccCCceEEe
Q 001318 494 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ 557 (1101)
Q Consensus 494 ~h~~~-----v~-~v~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~ 557 (1101)
..... +. +..+ .. .+++.++ .+|.+..+|..+++....+........... +.... ...
T Consensus 138 ~~~~~~~~~~i~ssP~v--~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~- 211 (488)
T cd00216 138 NNDQVPPGYTMTGAPTI--VK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW- 211 (488)
T ss_pred CCCCcCcceEecCCCEE--EC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence 43221 11 1111 11 3455543 367889999999888877654321110000 00000 000
Q ss_pred ccccC-ceeEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEcCCCCCC----CcCeEEEc
Q 001318 558 GFRKR-SLGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN 614 (1101)
Q Consensus 558 ~~~~~-~~~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s 614 (1101)
+.... ......+++.+..++.++.++ .|.-+|+.+|+.+..++...+.. ......+.
T Consensus 212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~ 291 (488)
T cd00216 212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA 291 (488)
T ss_pred cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence 00001 112345555566777776554 79999999999988876322210 00111111
Q ss_pred ----cCCC---EEEEEeCCCcEEEEEecCcc
Q 001318 615 ----KDGC---LLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 615 ----~~~~---~l~~~~~dg~i~iw~~~~~~ 638 (1101)
-++. .+++++.+|.+...|..+|+
T Consensus 292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred eccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 1333 57778888888888888883
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.14 E-value=0.0076 Score=67.07 Aligned_cols=104 Identities=16% Similarity=0.276 Sum_probs=63.7
Q ss_pred ecCCCeEEEEE--------ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 354 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 354 spdg~~llatg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999866632 223678899999876543 22225688999999999999988
Q ss_pred EcCCeEEEEEccCCceeeeeeeecc-------c---------cCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEe
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD 482 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd 482 (1101)
. ++.|.+++..++...+. +..| - -+.-..+-||||+++ |+.. -++..|..+.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence 6 57899999888754432 1222 0 122356889999996 4333 3344444443
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.13 E-value=0.002 Score=74.89 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=93.6
Q ss_pred EEEecCCCcEEEEEeccC------------------eEEEEEeecceEeeeecC--ccc----CeeEEEEc----CCCC-
Q 001318 852 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 902 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg------------------~v~vwd~~~~~~~~~l~~--h~~----~V~~l~~s----~dg~- 902 (1101)
.++.+ .+.+++.++.++ .|.-+|..+|+.+-..+. |.. ......+. -+|.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 455677776665 799999999988866532 210 00011111 1343
Q ss_pred --EEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE------------------EeCCeE
Q 001318 903 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 962 (1101)
Q Consensus 903 --~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~------------------~~d~~v 962 (1101)
.++.++.+|.+...|..+|+..-...... ..++.+| +..++. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57778889999999999987644332210 1122233 211111 135678
Q ss_pred EEEEcCCceeeeeccCCCCC------CCe--eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 963 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~~~h~------~~i--~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.-.|+.+|+.+-......+. .+. ..+.. .+.+|++++.||.|+.+|..+|+.+-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 88888888876655432111 111 12222 56788889999999999999999998877
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.00051 Score=76.71 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=90.8
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+....++++..++++++..|.|.++-++. ...++-.. .. .....|...|++++|++|++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~----------------~t--~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDY----------------VT--PCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCccee----------------ec--cccccCCceEEEEEeccccc
Confidence 4556677888888888888889998887654 11111111 11 11122788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE--eeeecCccc-
Q 001318 819 YVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSK- 890 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~- 890 (1101)
.+++|. .|+|.+-.+.+. -..+.+......|..+.+.. +.+|++...- -.+++.+.++. +.+-. ..+
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~eti~QIG~k~-R~~~ 212 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEAETITQIGKKP-RKSL 212 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecchhHHHHhcCCC-cCCc
Confidence 999999 699888887762 11223333466788887763 5555543322 23444443321 11111 111
Q ss_pred CeeEEEEcCC----CCEEEEEeCCCceEEEeCC
Q 001318 891 RITGLAFSHA----LNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 891 ~V~~l~~s~d----g~~l~s~s~D~~v~iwd~~ 919 (1101)
.-.+.+|-|. .+-.+.++.=| .|+|.++
T Consensus 213 ~~~GACF~~g~~~~q~~~IycaRPG-~RlWead 244 (726)
T KOG3621|consen 213 IDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD 244 (726)
T ss_pred cccceEEeeccccCCCceEEEecCC-CceEEee
Confidence 1234455543 33445555555 7888765
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.08 E-value=0.00053 Score=76.28 Aligned_cols=289 Identities=13% Similarity=0.126 Sum_probs=145.8
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
.+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++....-+..+ ...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~----------- 85 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG----------- 85 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT-----------
T ss_pred ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee-----------
Confidence 46799999999765544332 23578899999999999886 578999987666221111111 000
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccce
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i 741 (1101)
+..|-.| |-.++ + --..-
T Consensus 86 ------------------------------------------i~nG~~d-----wvyeE-----E----------v~~~~ 103 (353)
T PF00930_consen 86 ------------------------------------------IYNGVPD-----WVYEE-----E----------VFDRR 103 (353)
T ss_dssp ------------------------------------------EEESB-------HHHHH-----H----------TSSSS
T ss_pred ------------------------------------------EEcCccc-----eeccc-----c----------ccccc
Confidence 0000000 00000 0 00111
Q ss_pred EEEEEcCCCceEEeeecC-ceEEeeecccc-------------ccCCCCceeeeecCccccCCCccccccccC--CCCCC
Q 001318 742 SRLIFTNSGNAILALASN-AIHLLWKWQRT-------------ERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPE 805 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~-------------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~--~~~~~ 805 (1101)
..+-|||||+.|+....| ..+..+.+..- .....|.......+.++++.++........ .....
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 345666666666655543 33333322111 011222233344556677777765332221 01235
Q ss_pred CCeeEEEEecCCCEEEEE-e--C---CeEEEEECCCCceeeEecC-CCC---CeEEEEEe-cCCCcEEEEEeccCeEEEE
Q 001318 806 EAVPCFALSKNDSYVMSA-S--G---GKISLFNMMTFKTMATFMP-PPP---AATFLAFH-PQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~-s--d---g~i~vwd~~~~~~~~~~~~-~~~---~i~~l~~s-p~d~~~lasg~~dg~v~vw 874 (1101)
.-+..+.|+++++.|+.. . + -.+.++|..++.+...... ... .-....|. ++++.+|.....||.-+||
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 568889999999944443 2 2 2377888877655433321 122 22355555 6567777777788855555
Q ss_pred --EeecceEeeeecCcccCeeE-EEEcCCCCEEE-EEeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCC-eEEEE
Q 001318 875 --NVRVDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQF 947 (1101)
Q Consensus 875 --d~~~~~~~~~l~~h~~~V~~-l~~s~dg~~l~-s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~ 947 (1101)
+...+. ...+....-.|+. +.++++++.|. ++..+ ..-.+|.+.........++.... .. ..+.|
T Consensus 264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-------~~~~~~~~ 335 (353)
T PF00930_consen 264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-------GDHYSASF 335 (353)
T ss_dssp EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-------STTEEEEE
T ss_pred EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-------CCceEEEE
Confidence 444444 4455555566755 67788877665 45442 23445544332011122222221 22 58999
Q ss_pred cCCCcEEEE
Q 001318 948 HQDQIHFLV 956 (1101)
Q Consensus 948 s~dg~~la~ 956 (1101)
||+|++++.
T Consensus 336 Spdg~y~v~ 344 (353)
T PF00930_consen 336 SPDGKYYVD 344 (353)
T ss_dssp -TTSSEEEE
T ss_pred CCCCCEEEE
Confidence 999999887
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.06 E-value=0.0027 Score=67.87 Aligned_cols=286 Identities=15% Similarity=0.088 Sum_probs=136.1
Q ss_pred EEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001318 744 LIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 822 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 822 (1101)
=+|.+||+.|+.++. +|.-.+|-+ |++++...+.. .. .........++++++.++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLT--dg-~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLT--DG-PGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECc--cC-CCCCccceEEecCCCeEEE
Confidence 467889987776665 555555543 44555544321 11 1112224667788888776
Q ss_pred Ee-CCeEEEEECCCCceeeEecCCCCCeEEEEEec-CCCcEEEEEec----------------------cCeEEEEEeec
Q 001318 823 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGMD----------------------DSSIQIYNVRV 878 (1101)
Q Consensus 823 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~lasg~~----------------------dg~v~vwd~~~ 878 (1101)
.. +..|+-.|+.+.+....+.-....+-...|.. .|+..++-.-. ...|.--|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 65 57899999999876666655566555555542 24555442211 12455556666
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC----CCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
|+....+. -..-+..+.|||....+++=+. |.. -|||-+++.......+.+... ...+..=-|.|||..
T Consensus 178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGST 251 (386)
T ss_dssp --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-
T ss_pred CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCE
Confidence 66444333 3455778999997655555433 332 377766543222211111111 135567789999998
Q ss_pred EEE-Ee-----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----------------eEEEEEc
Q 001318 954 FLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSA 1011 (1101)
Q Consensus 954 la~-~~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----------------~v~vwd~ 1011 (1101)
+.. +. +..|.-+|+.+++...... ......+..++||++++-=+.|. -|+++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 876 32 3367788898886644322 22455677789999887544432 4677888
Q ss_pred CCceeee--ecCCCcccCCCCCCCCccceEEEEeCCCCCE-EEEEecCCcEEEEecc
Q 001318 1012 ANLKLRC--RINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1012 ~~~~~~~--~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~-l~s~~~dg~v~vW~~~ 1065 (1101)
..++... +...+-..-.|+ .. +.---..|+|+ +++ |.+....|...|+-++
T Consensus 328 ~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 328 EAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE
T ss_pred ccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEe
Confidence 8776532 211000011111 00 11124899995 555 5566667766666543
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.00073 Score=74.74 Aligned_cols=281 Identities=12% Similarity=0.167 Sum_probs=141.9
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeee------------ecCccccC--------CCcccccccc
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS------------VAPQLWQP--------PSGIMMTNDV 799 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------~~~~lw~~--------~~g~~~~~~~ 799 (1101)
.|+.+.|+++..-|+++...|.+.||.+.............. ..-.+-|+ ..|.+....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578999999988899999999999999876544320000000 01111111 1232222222
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEe--cC------CCCCeEEEEEec----CCC---cEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA 863 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~--~~------~~~~i~~l~~sp----~d~---~~la 863 (1101)
.. ..+.|++++.| |=-++|+|. +|.+.|.|++....+..- .. ....++++.|+- +|+ -.|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47899999997 555999999 899999999887766552 22 234588888872 122 4788
Q ss_pred EEeccCeEEEEEeec---ceEeeee----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee--ee-cCC
Q 001318 864 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT 933 (1101)
Q Consensus 864 sg~~dg~v~vwd~~~---~~~~~~l----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~-~~~ 933 (1101)
+|++.|.+.+|.+.- +.....+ ..+.++|..+ ...+.++++...... ++ ...
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998752 1111111 1222233222 222333332211110 00 001
Q ss_pred CCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc-----CCCCEEEEEEcCCeEEE
Q 001318 934 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s-----pdg~~l~s~s~dg~v~v 1008 (1101)
+. . ...+++++.+..++++...+.+...... ...-....+++- ..+..|++-..+|.|++
T Consensus 222 g~-----~--------i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-----S--------IPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-----C--------cCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 0 1225666889999999999887766544 112233344552 35667889999999999
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
|.+...+.+..+....... ..... ..++++ +|+.++-.+. ..+.++.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SS-SEEEEEEE
T ss_pred EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeCc-ccEEEEEE
Confidence 9999999998777321110 11122 455666 6777666653 34344433
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.05 E-value=0.0013 Score=68.88 Aligned_cols=243 Identities=13% Similarity=0.152 Sum_probs=141.7
Q ss_pred eeEEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCCCC-------CeEEEEEecCCCcEEEEEe--c
Q 001318 808 VPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D 867 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~--~ 867 (1101)
.-.+.++||++.+++++ ...|.+||..+.....++.-... .....+++. |++++.+.. -
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence 44578899999988753 12399999999887775432221 223467777 777776643 3
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCeEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
--.|.|-|+..++.+..+.-- .+..+--+. .+-+.+.+.||++.-..++ .|+.. ...-..+..... .-...-+
T Consensus 117 a~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~d--p~f~~~~ 190 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDD--PLFEHPA 190 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS---B-S--E
T ss_pred CCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCc--ccccccc
Confidence 357888888888877766522 122222222 2457788889999988887 34332 222222222111 1223344
Q ss_pred EcC-CCcEEEEEeCCeEEEEEcCCceee--eeccCC------CC--CCCeeEEEEcCCCCEEEEEEcCC----------e
Q 001318 947 FHQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLDA----------T 1005 (1101)
Q Consensus 947 ~s~-dg~~la~~~d~~v~vwd~~~~~~~--~~~~~~------~h--~~~i~~l~~spdg~~l~s~s~dg----------~ 1005 (1101)
++. ++.++.++.+|.|+--|+...... ..|..- .+ .+...-+++.+....|++-...| .
T Consensus 191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence 444 445666788888888887655321 122110 00 23345577877665555443221 4
Q ss_pred EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001318 1006 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1006 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
|.++|+.+++.+.++. +.+. +. +|+.+.++..+|++. ..++.|.+||..+|+
T Consensus 271 VWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 271 VWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 8899999999999987 3221 33 677777665577654 458999999999998
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00047 Score=76.99 Aligned_cols=121 Identities=10% Similarity=0.024 Sum_probs=94.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
|...|.--+++-.+++ ++.|+.-|.+++|+-.+++.+.. ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4556667778888886 99999999999999888876542 1233556778888999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeee---eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~---l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
+|+..|.|.++-+..+........ -..|...|++++|++|+. .+.+|...|.|..-.+.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence 999999999998877443222111 123778999999999999 699999999998888776
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.02 E-value=0.0001 Score=84.06 Aligned_cols=184 Identities=11% Similarity=0.132 Sum_probs=129.2
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++..++-|+-...+..+|+.+.+..+.. .-....|.-|.. +++ ++.+|...|+|.+-|..+-+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~---~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT---NVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee---eccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 4566777888888999999988765522 222334555554 566 799999999999999999999999999999
Q ss_pred CeEEEeeeecCCccEEEEEec---------CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.|..+.. .|++|++++. |.-|++||++..+.+.-+..+.++ . .+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~---------------------flr 272 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-Q---------------------FLR 272 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-h---------------------hhh
Confidence 9987753 4468888875 556899999987665443333221 1 122
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCC-Cce-eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 569 FDTT-KNRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 569 ~~~~-~~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
|+|. ...+++++..|...+-|..+ +.+ ...+..+.....+..+.++++|..++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 3332 14577888889998888322 111 222222222335888999999999999999999999973
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0018 Score=66.31 Aligned_cols=217 Identities=10% Similarity=0.084 Sum_probs=119.0
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc-ccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+.+.+-...+..++|.|+++.++|+....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3455666679999999966778888999999998886 47777776432 345788999988888887767899999998
Q ss_pred CCccc--ccc--eeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC---ceeeee-----cc-CCCCCCC
Q 001318 919 DGWEK--QKN--RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAP 984 (1101)
Q Consensus 919 ~~~~~--~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~---~~~~~~-----~~-~~~h~~~ 984 (1101)
..... ... ..+... -.......+..++|++.+..|.++ ...-..+|.+.. ...+.. +. .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~-~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLG-FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecc-cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 44221 111 111111 111222468999999987777765 444456666543 111111 11 1123556
Q ss_pred eeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 985 ITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 985 i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
+.++++.|. |.+++.......|.++| .+|+.+..+....-.+ |-....-.+-.|+|.+ +|+ |...++-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 899999985 55677777888899999 7788877666322111 1011223466899998 664 5555566655554
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00022 Score=73.83 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=134.1
Q ss_pred EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCC-CEEEE
Q 001318 828 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 906 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l~s 906 (1101)
+++.+..+.+...-+.++...|..++|||...-++..++.+..|.|.|+++..++..+..| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 7777777776666677788889999999944448999999999999999999999998888 789999998765 55666
Q ss_pred EeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE------EcCCCcEEEEEeCCeEEEEEcCCc--eeeeeccC
Q 001318 907 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ------FHQDQIHFLVVHETQLAIFETTKL--ECVKQWVP 978 (1101)
Q Consensus 907 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~dg~~la~~~d~~v~vwd~~~~--~~~~~~~~ 978 (1101)
|...|.|.|||++..+...........- .+|..++ ..+.|.+|+.+ --.+..|+.... ........
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7788999999998755322221110110 1333332 22334444432 122344544321 11111111
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEE-cCC------eEEE-EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 979 RESSAPITHATFSCDSQLVYACF-LDA------TVCV-FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~~l~s~s-~dg------~v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+..+...++++.+-.+.++... .+- .|-+ -|..+|..++..+...+ .+.... +...-..+.+.|.+++
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~--Gs~~~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF--GSKQTK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc--CCcccc-cccccceeccccccEE
Confidence 2244556666655445444332 211 1111 24456777765553332 111111 1111223333344554
Q ss_pred -EEEecCCcEEEEeccCCC
Q 001318 1051 -ALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1051 -~s~~~dg~v~vW~~~~~~ 1068 (1101)
..|...+.+.+||+.+.+
T Consensus 404 v~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEecCCcceeEEeccchhh
Confidence 456666899999999888
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00033 Score=79.78 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=138.0
Q ss_pred EEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEeccC-----eEEEEEeecc----
Q 001318 811 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 879 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~---- 879 (1101)
-++++.+..+|.|+ +|.|.+.+- ..+.++.++.+... |..+-... +..+|++-+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 46778888999999 899988884 34555777777766 44444443 556787777665 5999999742
Q ss_pred --eEee--eecC-----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 880 --EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 880 --~~~~--~l~~-----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.++. .+.. ...++.+++.|.+-+.+|.|-.||.|..+.=+--.....+..-...+. .+|+.++|-.+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 2331 1222 346788999999999999999999998885433222222222222222 58999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 951 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 951 g~~-la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
++. +.++.-.+|.+|.+.... ...-..+.|...+.|-+|++...-+++++ +..|.+|+.+.......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 987 555777889999998444 33322457788999999987555355554 5679999987555544444
No 342
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.99 E-value=4.8e-05 Score=73.88 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=104.9
Q ss_pred chhHHHHHHHH-------------HhHhcCcccc---------HHHHHHHhhcCChHHHHHHhcccc--cccCcccccee
Q 001318 4 LSRELVFLILQ-------------LEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 59 (1101)
Q Consensus 4 ~~~e~vrli~q-------------l~~esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 59 (1101)
.+.|+=|||+. ..+|+|+... -...|.+|..|+-++|+..+.++- .++.+ + .+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-EL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-hH
Confidence 35677788887 8889999871 677889999999999999998872 22222 2 27
Q ss_pred hhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhh---cccCcchhhhhhccCCchHHHHHHHHHHhh
Q 001318 60 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL---TLENFRENEQLSKYGDTKSARSIMLVELKK 136 (1101)
Q Consensus 60 ~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll---~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 136 (1101)
.|.+.+|+++||+..+...+|+.++|++|.|+...+++.++.|...| .....++.+...-| ....|.++.+.+..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~ 179 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNS 179 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999877767766665543 33322222221111 24457777777776
Q ss_pred cccCCccccccccCCCCC-hHHHHHHHHHhHHHH
Q 001318 137 LIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 169 (1101)
Q Consensus 137 ~i~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 169 (1101)
.|-...- .+ ..+|..||+.-+.-|
T Consensus 180 aiL~~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 180 AILASQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHhc---------ccccchHHHHHHHHHHHH
Confidence 6533111 11 456777774443333
No 343
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.97 E-value=0.003 Score=67.61 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=90.5
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cC-eEEEEEeec-ceEeeeecCcc--cCeeEEEEc
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHS--KRITGLAFS 898 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg-~v~vwd~~~-~~~~~~l~~h~--~~V~~l~~s 898 (1101)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|. ..+..=-|+
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 456667788877654444 45678899999988888877642 32 237787764 44444444343 234455689
Q ss_pred CCCCEEEEEe-----CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCC------------
Q 001318 899 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------ 960 (1101)
Q Consensus 899 ~dg~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~------------ 960 (1101)
|||..|.--+ .+..|.-.|+.+++... +.... .-..+-.++||++++. +.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 9998776432 24467777888765422 22222 2246677899999887 5442
Q ss_pred ----eEEEEEcCCceeeeecc------CCCCCCCe--eEEEEcCCCCEEE-EEEcCCeEEEEEc
Q 001318 961 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1011 (1101)
Q Consensus 961 ----~v~vwd~~~~~~~~~~~------~~~h~~~i--~~l~~spdg~~l~-s~s~dg~v~vwd~ 1011 (1101)
-|.++++.+++...... ...|...+ -...|||||++++ ++...|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887766532211 10111122 3578999999865 5556777766644
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0011 Score=74.38 Aligned_cols=224 Identities=11% Similarity=0.115 Sum_probs=119.6
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
......+.++|+|+.+++ +.+|...|+..... +. ...+.....+|.+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCc
Confidence 345688999999997777 67777777752100 00 022345568888866
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
++.+.-.+++|.++.--+......++.. ..+..+-. |.+|+..+.+ .|.+||..+++.++++... +|..|.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6444444788999743333333344322 22333322 6677766544 8999999999999998744 3899999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCc---------ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 968 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~ 968 (1101)
+++|.+++-.+.+ ++.|++.+.. -......+.... ..|.+.+|..| .++.+...+++- +-
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d--~fiYtT~~~lkY--l~ 221 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED--CFIYTTSNHLKY--LV 221 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT--EEEEE-TTEEEE--EE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC--EEEEEcCCeEEE--EE
Confidence 9999999998866 5888876542 000111111111 36788899888 333343336666 33
Q ss_pred Ccee--eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 969 KLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 969 ~~~~--~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+|+. +..+ ..+++=+.+.+....+.....|+.|..+.++....
T Consensus 222 ~Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 222 NGETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp TTEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHH
T ss_pred cCCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHHH
Confidence 3332 3332 45777788888778888888999999888765443
No 345
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00034 Score=79.16 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=127.5
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
...++++++ .+++++-|. +|.|++++... .. .+...|... .. +|.++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence 445666666 356899998 89999999764 33 333223332 44 89999999999999999998887776
Q ss_pred eecCcccCeeEEEEcCC-----CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 884 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~d-----g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
++. ...++.+|+++|| .+.+++||.-| +.++.-.=-.......+.. ..+.|.++.| .|.++|-++
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence 665 3467999999998 57899999888 7766422100001111111 1257888877 466777799
Q ss_pred CCeEEEEEcCCceeeeeccCCCC----CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 959 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h----~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
|-.|+|||+.+.+.+..+..... ..-...+.|.++.++++ | ...+|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 99999999999988877654221 22345678887766554 4 55578888887
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.90 E-value=0.042 Score=64.13 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=42.0
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 888 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h 888 (1101)
|.|.-+|+.+++.....+............ .+.+++.++.||.++.+|.++|+.+-..+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457888888888877665332222222122 3447777888999999999999998777543
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.90 E-value=0.0034 Score=69.53 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=140.1
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeE------ee------------eeeeeecCCCCc------cccccc
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSM------PLQAAL 402 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~~------~~~~~~ 402 (1101)
.|+++.|+++..- |++|...|.|.||.+...+.-. .. +-++-|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999999775 8999999999999886653322 00 112333322111 122234
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecc------ccCCeeEEEEc-----CCC-CeEEEE
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 470 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~V~~~~~s-----~d~-~~~~l~ 470 (1101)
+....+.|++++.| |=.++|+|+.+|.+.|.|++....+... .+.. ....|+++.|+ .|+ ..++++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999997 6779999999999999999876655431 2322 34468888886 222 224788
Q ss_pred EecCCCcEEEEeCC-C--CceE----EEecCcccCeEEEeeeecCCc-------------------cEEEEEecCCcEEE
Q 001318 471 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA 524 (1101)
Q Consensus 471 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~~~dg~i~~ 524 (1101)
.|...|.+.+|.+. . +... .....+.++|..++.-...+| +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999875 1 2211 112245566666653211110 12333344677888
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
+...+.+...+.......+..+.+-+-. . ...+..|++-..+|.|++|.+..-+.+..+.....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8776655443332111111222221000 0 11234577788999999999999998888775321
Q ss_pred --CCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 605 --LPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 605 --~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+...+++++|..++-.+. ..+.++.+-
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv~ 335 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSVW 335 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEEE
Confidence 123556788889987665543 455555543
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.00024 Score=78.31 Aligned_cols=80 Identities=19% Similarity=0.327 Sum_probs=67.3
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+.....|.|++++|+.+. ++.|..||.|++||...+.... ..+.-..+.++|+|
T Consensus 252 svtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIPTLIAWHP 309 (545)
T ss_pred EEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeeee---------------------eeecccceEEEEcC
Confidence 3445568999999999999996 9999999999999998764432 23345688999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCC
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~ 439 (1101)
+|..+++|+..|.+.+||+.-+
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999998754
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.014 Score=65.70 Aligned_cols=198 Identities=15% Similarity=0.176 Sum_probs=109.6
Q ss_pred EEEEecCCCEEEEEeCC------------eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 810 CFALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
.++.+|.|-.+|...|. .|++|+.. |+.+..+.-..+.+.++.|+. +.. |++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 35566666666666543 59999875 566666543448899999997 544 4456789999999986
Q ss_pred cceE-------eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-cceee-ecCCCCC--CCCCCCeE-E
Q 001318 878 VDEV-------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDTR-V 945 (1101)
Q Consensus 878 ~~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~v~~-~ 945 (1101)
|+. +....-....+....+..+|-.+.+ .++.+.+- ...... ..+.. ..+.... ........ .
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccce
Confidence 332 1111112233333344445633333 34433333 222211 00001 1111000 00001111 2
Q ss_pred EEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 946 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 946 ~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++.+....+. ..++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|.+.+-.+.++.+.
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 34445444444 4455565444332211 1 114689999999999999999999999999887777777666
No 350
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.80 E-value=0.15 Score=60.11 Aligned_cols=470 Identities=12% Similarity=0.111 Sum_probs=237.4
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCcc----EEEEEecCCcEEEEec
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 527 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~----~l~s~~~dg~i~~wd~ 527 (1101)
+.++..+.+.+..+ ++.++.++.+...++..+.....- ......|.|+.++|-++++ +++.|.-+..+
T Consensus 488 ~~~ti~~~~~n~sq--VvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~----- 560 (1096)
T KOG1897|consen 488 GKITIGVVSANASQ--VVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDIS----- 560 (1096)
T ss_pred CceEEEEEeecceE--EEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceE-----
Confidence 33444444445553 555666677777777766622211 2235668888887665544 45544433322
Q ss_pred CCCCceeeecCCCCceeEEEEccCCceEEecc-----ccCceeEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEEEc
Q 001318 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID 600 (1101)
Q Consensus 528 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~ 600 (1101)
.-+.+.||........ -...+-...+-.+..+|+++..||.+.-|.++ +++.-..-+
T Consensus 561 ----------------~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 561 ----------------MILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred ----------------EEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 2233333333211110 01234445555667899999999998777554 443322222
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.+-+..++.--.|+..++.-+.+..|.-..+|.-+.. -.+..+.-..-. .+.+..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~----------~~c~f~-------------- 679 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN----------HMCPFN-------------- 679 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh----------hhcccc--------------
Confidence 2223334444456654444444445556556643221 222111100000 000000
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
...-...++. ...+.+++..++....... ++ +|. ......+++.+....+.+.+...
T Consensus 680 ----------------s~a~~d~l~~-~~~~~l~i~tid~iqkl~i-rt--vpl---~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 680 ----------------SDAYPDSLAS-ANGGALTIGTIDEIQKLHI-RT--VPL---GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred ----------------cccCCceEEE-ecCCceEEEEecchhhcce-ee--ecC---CCChhheEecccceEEEEEeccc
Confidence 0001122222 2335666666665432211 11 121 23445667766444444444322
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccc-cCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCe
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 827 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~i~~~~~s~d-g~~la~~s-----------dg~ 827 (1101)
....= . .+.......++++|.++-+.+... +........+.++.|..| +.++++|. .|.
T Consensus 737 e~~~~------~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSAE------Y--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccchh------h--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 11100 0 011111112345555554433321 111111223444557777 77888773 267
Q ss_pred EEEEECCCCceeeEecCC--CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 828 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
|.+|....++.++....+ .+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 889988875555444333 3455555443 5777764 467899999999877877778889999999999999999
Q ss_pred EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc----------eeeee
Q 001318 906 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL----------ECVKQ 975 (1101)
Q Consensus 906 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~----------~~~~~ 975 (1101)
.|..-+.+.+--.+..+. .+....+.-.+ ..++++.+-.+..++.+-.++.+.+-..++. +.+..
T Consensus 885 VgDlm~Sitll~y~~~eg---~f~evArD~~p--~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEG---NFEEVARDYNP--NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCC---ceEEeehhhCc--cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 999888777665544221 12222222211 3567788878888877766666555433321 01111
Q ss_pred ccCC------CCCCCeeE--EEEcCCCCEEEEEEcCCeEEEEE
Q 001318 976 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 976 ~~~~------~h~~~i~~--l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
|..+ .|..-|.+ -..+|-+..++.|..+|.|-+--
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEE
Confidence 1110 13333333 13345555678888899987653
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0067 Score=67.93 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=146.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEeecceE
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~~ 881 (1101)
....+++++++..+.+.. ++.|.+.|..+.+......-. .....+++++ +++.+.++.. ++.+.+.|-.+++.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence 345788899998666655 689999998877766655422 2677899999 6655555544 68999999988888
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-- 957 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-- 957 (1101)
+.....-..+ ..++++|+|..+..+. .++.|.+.|..+..... ........+ .....+.++++|.++.+.
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEec
Confidence 8775443344 8899999999666554 78899999977643221 000001111 245789999999987773
Q ss_pred eC--CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-CeEEEEEcCCceeeeecC
Q 001318 958 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 958 ~d--~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~~~~~~~~~~~ 1021 (1101)
.+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 58999999988887763322223 56788999999998877544 889999999988887655
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.80 E-value=0.031 Score=65.22 Aligned_cols=149 Identities=12% Similarity=0.084 Sum_probs=87.0
Q ss_pred eEEEEEeecceEeeeecCcccCeeE---------EEEcCCCC---EEEEEeCCCceEEEeCCCcccccce------ee--
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNR------FL-- 929 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~l~s~s~D~~v~iwd~~~~~~~~~~------~~-- 929 (1101)
.|.-.|+++|+..-.++.....++. +....+|+ .++.+..+|.+.+.|-.+|+..... ..
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887666542222221 22224665 7889999999999999998753110 00
Q ss_pred ec--CCCCCC---------------------CCCCC--eEEEEcCCCcEEEE-EeC------------------------
Q 001318 930 QI--PTGRTP---------------------TAQSD--TRVQFHQDQIHFLV-VHE------------------------ 959 (1101)
Q Consensus 930 ~~--~~~~~~---------------------~~~~v--~~~~~s~dg~~la~-~~d------------------------ 959 (1101)
.+ ..+... ..+.+ ..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 000000 00000 12566776665554 211
Q ss_pred ---------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ---------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.-+|+.+++.+-...... ....+. +.-.+.+++.++.||.++.+|..||+.+-+++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357788888888766543211 111111 22255677778889999999999999998887
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.77 E-value=0.00033 Score=77.19 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=89.6
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEe----cCCc----EEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGT----NVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
++.....-+....++.||-...+.+.|-. .+|. -.+|++..++... ..+ +-.....
T Consensus 197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s 260 (545)
T PF11768_consen 197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS 260 (545)
T ss_pred EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence 33444445566788888875544444332 2443 3566665443221 111 2335677
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.+||+.-...
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence 9999999999999999999999999999876322 223455688999999999 899999999999999875443
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0072 Score=67.94 Aligned_cols=218 Identities=17% Similarity=0.167 Sum_probs=119.2
Q ss_pred CCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 805 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...+..+.++|+|++++++++|...|+.....+... .+.....+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 445788999999999999999999999854433322 23456788988 565 56666688999973222332223
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 964 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~v 964 (1101)
++.. ..+..|-. |.+|...+.+ .|.+||+++++... .... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12344433 8888877655 79999999865322 2221 2478999999999999977778888
Q ss_pred EEcCCc--------------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eeecCCCcccCC
Q 001318 965 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1028 (1101)
Q Consensus 965 wd~~~~--------------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~ 1028 (1101)
++.+.. ..+..+ ...|.+.+|..| .++-.+.. .++- +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-------
Confidence 765543 233222 457889999766 44434334 6665 444443 33332
Q ss_pred CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1029 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1029 ~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..++ -+.+.++ .+.+.....|+.|..+.+...+
T Consensus 233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence 1144 4556663 4688888899999988875443
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.75 E-value=1.8e-05 Score=86.46 Aligned_cols=159 Identities=14% Similarity=0.223 Sum_probs=108.2
Q ss_pred CCCCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCe
Q 001318 344 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 421 (1101)
....+.|+++.-+.+ -++++|..+|.|.+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 556788888876554 58999999999999887643221 1124678888999999999 8889
Q ss_pred EEEEE----cCCeEEEEEccCC--ceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEec
Q 001318 422 FGVAY----SRHIVQIYSYHGG--DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE 493 (1101)
Q Consensus 422 las~~----~d~~i~iwd~~~~--~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~ 493 (1101)
||+|- .|..+.|||+.++ .+.... .+. +-.....+++|-.+.+ ++++|...+.+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 99883 3677999999986 211111 122 2445677899998887 78899988999999987322 22222
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
.+..+..+.+.+- .+.++++-. ||.|-+||
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeecc
Confidence 2223344444331 234666655 99999999
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00068 Score=75.79 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=116.6
Q ss_pred CCCeeEEEEecCCCEEEEEe---CC--eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEee
Q 001318 805 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVR 877 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s---dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~ 877 (1101)
...+..-+|+|+++.++..+ .+ .+.++++.+++....+. ..+.-..-+|+|++.+++++...|| .|+++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44566778999999877664 23 49999999887665554 3444556789994444445556666 56666777
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
++. +..+..-.+.-+.-.|+|||++|+-.+. .|. |.+.+.+++.. .+ + +..+. .-..-.+||||+++
T Consensus 271 ~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~r-i-T~~~~-----~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TR-L-TFSGG-----GNSNPVWSPDGDKI 340 (425)
T ss_pred CCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eE-e-eccCC-----CCcCccCCCCCCEE
Confidence 666 3335544444457789999999886654 444 55556665442 11 1 11111 11266899999999
Q ss_pred EEEe--CCe--EEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 955 LVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 955 a~~~--d~~--v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
+... ++. |.++|+.++...+.+. +......-+|.++|+.+...+.-
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence 9832 454 7777777666433332 23344556788888887755543
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.031 Score=57.32 Aligned_cols=162 Identities=8% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...+..++|.|+...|+++....+.|...+.+ |+.+.+.+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445699999999988889999999999988864 67665422 223 34678899988888887
Q ss_pred EEEcCCeEEEEEccCCce---eee--eeee--c-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---CceEEE-
Q 001318 424 VAYSRHIVQIYSYHGGDE---VRQ--HLEI--D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYI- 491 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~---~~~--~~~l--~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~- 491 (1101)
+--.++.+.++++..... ... ...+ . .+...+-.++|.+.++. |+.+-...-..|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766789999998843221 111 1111 1 35567999999999885 44445555556665543 222211
Q ss_pred -e------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 492 -F------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 492 -~------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
. ......+.++.+++. .+++++.......|..+|.
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR 200 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence 1 123345677888754 5578888888888888883
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.17 Score=57.18 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCc-c
Q 001318 812 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 889 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~ 889 (1101)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3445555555444 56666555433211 22 346899999999 9999999999999999876555555555433 3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..+||+.-..
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677776543333222 23344443222 223444444444445444477777666
Q ss_pred ceeeeec
Q 001318 970 LECVKQW 976 (1101)
Q Consensus 970 ~~~~~~~ 976 (1101)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 6665544
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.08 Score=59.37 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=156.9
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
....+++.+++..+.+.. ...+...+.. ....... ......-..+++++.+.+..+....+..|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 456678888886666554 2345555555 2222221 21113455778888445566666677999999987776665
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--e
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 958 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~ 958 (1101)
...--. .-..++++++++.+..+.. ++++.+.|-.+...... ...+.. -..++++|+|..+.+. .
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecC
Confidence 543222 4567999999987776655 67788888777553222 233321 2789999999988874 5
Q ss_pred CCeEEEEEcCCceeeeeccC---CCCCCCeeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 959 ETQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~---~~h~~~i~~l~~spdg~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
++.|.+.|..+....+ ... -.-......+.++|||.++.+.... +.+.+.|..++.....-... .
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~ 251 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------G 251 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------c
Confidence 8999999988776664 110 0113456788999999977665544 58999999998887652211 1
Q ss_pred CCccceEEEEeCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
.. .+..+..+| ++..+.+. +..+.+.+-|..+..
T Consensus 252 ~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 252 SG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 11 344688899 56776665 444888888887766
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.54 E-value=0.015 Score=68.26 Aligned_cols=203 Identities=13% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCeEEEEEecCCCcEEEEEe------ccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC-CceEEE-
Q 001318 847 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW- 916 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~------~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iw- 916 (1101)
..+...++|| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|.+.... ..+++.
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777776654 244 4555554 22222222332 37889999999988877533 122222
Q ss_pred ----------eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEE---EEcCCceeeee-----ccC
Q 001318 917 ----------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVP 978 (1101)
Q Consensus 917 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~v---wd~~~~~~~~~-----~~~ 978 (1101)
+++.++... .....|..+.|||||+.++...+++|.+ -....|. ... +.
T Consensus 426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~- 492 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG- 492 (591)
T ss_pred cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-
Confidence 333322110 0124699999999999999966788877 4444454 111 11
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 979 RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 979 ~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
.+-...+.++.|..++.++ ++..++...+|.+.- |.....+ +.+.....+. +|+-.+ ..++....+|
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~n~~~~v~--~vaa~~---~~iyv~~~~g 560 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSRNLSAPVV--AVAASP---STVYVTDARA 560 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCCCccCceE--EEecCC---ceEEEEcCCc
Confidence 1223346889999999965 455555555565432 2222111 1111111133 566665 2455556666
Q ss_pred cEEEEeccCCCccccCCCCCC
Q 001318 1058 GVHVFEPLESEGKWGVPPPVD 1078 (1101)
Q Consensus 1058 ~v~vW~~~~~~~~~~~~~~~~ 1078 (1101)
.+.+=.-..++..|+-.+...
T Consensus 561 ~~~l~~~~~~~~~W~ev~~l~ 581 (591)
T PRK13616 561 VLQLPNSDSGDQYWREVPGLM 581 (591)
T ss_pred eEEecCCCCCCCCceECcccc
Confidence 433332223336676655544
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0077 Score=67.51 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=109.0
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe---cc-CeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
..+.+-|.. +.....+......+..-+|+| +++.++... .. ..++++|+.+++....+. ..+.-...+|||||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 345555554 454555554555677788999 666655442 22 469999999876444332 23334457999999
Q ss_pred CEEEE-EeCCCce--EEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----eEEEEEcCCceeee
Q 001318 902 NVLVS-SGADSQL--CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK 974 (1101)
Q Consensus 902 ~~l~s-~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~v~vwd~~~~~~~~ 974 (1101)
+.|+. ...|+.. .+.|+.++.. .+ +....+ .-..-.|+|||++++...|+ .|.+++++.....+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcc--ee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 88774 4556664 4556665441 11 221211 22466899999999985443 58888888776533
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcC-Ce--EEEEEcCCceeee
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1018 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~d-g~--v~vwd~~~~~~~~ 1018 (1101)
.-. .+ +.-..-.|||||++|+..+.. |. |.+.|+.++....
T Consensus 321 iT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 321 LTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 322 12 122277899999998877643 44 7778877766433
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.1 Score=59.75 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=123.6
Q ss_pred cEEEEEecCCCeEEEEEecCC----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 348 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+...++||||++++++-+..| .++|.|+.+++.+.. .+. . ..-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-----------------~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-----------------N--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-----------------E--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-----------------c--cccceEEEeCCCCEEE
Confidence 446789999998666666666 499999999977653 111 1 1122499999999887
Q ss_pred EEEcCC-----------eEEEEEccCCceeeeeeeeccccCC--eeEEEEcCCCCeEEEEEecC-C-CcEEEEeCCCC--
Q 001318 424 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-- 486 (1101)
Q Consensus 424 s~~~d~-----------~i~iwd~~~~~~~~~~~~l~~h~~~--V~~~~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 486 (1101)
....+. .|+.|++.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 665332 37788887764321 1134443333 57889999999643333332 2 35788888775
Q ss_pred --ceEEEecCcccCe-EEEeeeecCCccEEEEEec---CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 487 --AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 487 --~~~~~~~~h~~~v-~~v~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
.....+......+ ..+.. . ++.+++.... .+.|...++....... -..+.+.++.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~-~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~--------~~~~l~~~~~-------- 325 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDH-H--GDRLYILTNDDAPNGRLVAVDLADPSPAE--------WWTVLIPEDE-------- 325 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEE-E--TTEEEEEE-TT-TT-EEEEEETTSTSGGG--------EEEEEE--SS--------
T ss_pred CcCCcEEEeCCCCceEEEEEc-c--CCEEEEeeCCCCCCcEEEEeccccccccc--------ceeEEcCCCC--------
Confidence 2233333233333 33332 1 2233333322 3455555655543200 0001111111
Q ss_pred cCceeEEEEcCCCCEEEEE-eCC--CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC----CCcEEEEE
Q 001318 561 KRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKILA 633 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~ 633 (1101)
......+...+++|+.. ..+ ..|+++++..+.....+..... ..|..+...+++..+..... -+++..||
T Consensus 326 --~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 326 --DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp --SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred --ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 11122222233444443 333 3588899984455555543322 23444444455554443321 35677788
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+.++
T Consensus 403 ~~t~ 406 (414)
T PF02897_consen 403 LATG 406 (414)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8777
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.39 E-value=0.071 Score=57.18 Aligned_cols=233 Identities=11% Similarity=0.125 Sum_probs=131.7
Q ss_pred CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001318 748 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 827 (1101)
Q Consensus 748 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~ 827 (1101)
..++.|+.|+++| +.+++.... ..... ..+...|..+.+.++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR-----ILKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence 3567788898888 777775110 00000 00334499999999999999999999
Q ss_pred EEEEECCCCceeeEe--------------cCCCCCeEEEE--EecCCCcEEEEEeccCeEEEEEeecc-----eEeeeec
Q 001318 828 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 886 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~ 886 (1101)
++++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+.+.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 01122344444 1121445565554 458999888653 3445544
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC------CCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
-...+.+++|. ++.|+.|..++ ..+.|+.++..... ....... .....++..+. -+++.+|++ .+.
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~-~~~ 208 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLC-YDN 208 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEE-eCCceEEEE-ecc
Confidence 34678999998 55677776555 88899987553221 1111100 00001222223 334565554 333
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.-...|. .|+..+.... .-...+.++++ ...||++.+. +.|.||++.++++++.+.
T Consensus 209 ~g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 209 IGVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred eEEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 3333333 3332221000 01345667777 3457776654 569999999999998876
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.36 E-value=9.8e-05 Score=80.97 Aligned_cols=198 Identities=14% Similarity=0.184 Sum_probs=129.6
Q ss_pred CCeeEEEEecCCC--EEEEEe-CCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEe----ccCeEEEEEe
Q 001318 806 EAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd~ 876 (1101)
..+.|++...+.. .+++|. +|.|.+-......- .....++...+++++|++-|..+||+|- .|-.+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456666554433 567776 79888887764322 2334567778999999998889999884 4668999999
Q ss_pred ecc--eEe--eeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC-C
Q 001318 877 RVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-D 950 (1101)
Q Consensus 877 ~~~--~~~--~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 950 (1101)
.++ .+. ..+.+ -.....+++|-.|.+++.+|...+.+.++|++........ +++ ..+..+..+| .
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnT--------k~vqG~tVdp~~ 207 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNT--------KYVQGITVDPFS 207 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhh--------hhcccceecCCC
Confidence 876 111 12222 3344668999989999999999989999998742211111 111 1356677888 7
Q ss_pred CcEEEEEeCCeEEEEEc-CCce-eeeeccCC--CCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcC
Q 001318 951 QIHFLVVHETQLAIFET-TKLE-CVKQWVPR--ESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAA 1012 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~-~~~~-~~~~~~~~--~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~ 1012 (1101)
+.+++...|+.|.+||. .+-+ .+..+... .....+..++|+|... .|++.+ ..++|+.+|+.
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 88888888999999993 3322 12222111 1123589999999543 344444 45789999874
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.0099 Score=69.67 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=105.5
Q ss_pred CCeeEEEEecCCCEEEEEe-------CC--eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--------
Q 001318 806 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-------- 868 (1101)
..+.+.+++|||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| ||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3578899999999887654 32 46666653 222 33321 22478899999 77767666432
Q ss_pred ----CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEE---EeCCCcccccceeeecCCCCCCCCCC
Q 001318 869 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 869 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
+.+++.++..++... ...+.|..+.|||||..|+... ++.|.+ -....|+...........+-. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444333322 2356799999999999988766 467776 444444321111122222111 23
Q ss_pred CeEEEEcCCCcEEEEEeCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 942 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
+..+.|..++.+++...+. .+...++..... ..+.......++.+++=+++ .|+....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 5789999999966544333 344444443222 22122223566777777653 344555566443
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.05 Score=58.04 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=126.7
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee---
Q 001318 811 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--- 885 (1101)
Q Consensus 811 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--- 885 (1101)
..|.++...|+... .+.|.-|+..+++. ..+.........+.+.. ++ .|+++ +.-+++++.+++..+..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIAC--EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEE--ccccEEEeccCCceeEEeccc
Confidence 34566777666665 68899999876543 33332232223334443 44 44433 234666776655542222
Q ss_pred -cC-cccCeeEEEEcCCCCEEEEEeC-----C----CceEEEeCCC-cccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 886 -KG-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 886 -~~-h~~~V~~l~~s~dg~~l~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+ -...-+.+...|+|.+.++... . ..-.+|.+.. +. ......++. ..-..++||||++.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t 176 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT 176 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence 11 1245567888899988776544 1 1124565552 22 112222211 13367999999988
Q ss_pred EEEE--eCCeEEEEEcCC--cee---eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeeeecCCCcc
Q 001318 954 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1025 (1101)
Q Consensus 954 la~~--~d~~v~vwd~~~--~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~ 1025 (1101)
|..+ ..+.|.-|++.. +.. ..........+..-.++...+|.+-+++-.+| .|.+|+.+ |+++..+.
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~---- 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK---- 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence 8774 557888887752 211 11111122356677788888898876555554 89999988 99998888
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEec
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
+|. ..+.+++|-..+.+.|...+.
T Consensus 252 lP~------~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 252 LPV------KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC------CCCccceEeCCCcCEEEEEec
Confidence 442 123378887655566554443
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.046 Score=54.80 Aligned_cols=234 Identities=15% Similarity=0.110 Sum_probs=136.5
Q ss_pred eEEEEecCCCE-EEEEe-CCe-EEEEECCCCceeeEecCCCCC--eEEEEEecCCCcEEEEEecc-----CeEEEEEeec
Q 001318 809 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 878 (1101)
Q Consensus 809 ~~~~~s~dg~~-la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 878 (1101)
..++++|.... ++.+. -|+ ..+||..+.+...++...++. --.=.||| ||++|...-+| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 45677775543 44444 455 778999888777665433322 22346999 89988865433 7899999875
Q ss_pred c-eEeeeecCcccCeeEEEEcCCCCEEEEEeC------C------------CceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 879 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 879 ~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
+ ..+..+..|.-.--.+.|.+||+.|+.+.. | -.+.+.|..+|+...+..+..... .
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~----~ 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR----Q 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh----h
Confidence 3 456777778766778999999999997753 1 123344444444333322221111 1
Q ss_pred CCCeEEEEcCCCcEEEEE-eCCe-----EEEEEcCCceeeeeccCC-----CCCCCeeEEEEcCCCCEEEEEEc-CCeEE
Q 001318 940 QSDTRVQFHQDQIHFLVV-HETQ-----LAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL-DATVC 1007 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~-~d~~-----v~vwd~~~~~~~~~~~~~-----~h~~~i~~l~~spdg~~l~s~s~-dg~v~ 1007 (1101)
.+|..++..+||+.++.+ ..|. ..+=-...++.+.-+... .....|-+++..-+..+++..+- .+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 368889999999877763 2221 111111222222222111 11346778888877777665554 45578
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
+||..+|..+.... +++- . .++-. ..-++..+.+|.+.+.
T Consensus 306 i~da~tG~vv~~a~----l~da------a--Gva~~---~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA------A--GVAAA---KGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc------c--cceec---cCceEEecCCceEEec
Confidence 89999999886543 3321 1 12222 2335555567877766
No 368
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.042 Score=55.08 Aligned_cols=238 Identities=17% Similarity=0.194 Sum_probs=127.5
Q ss_pred EEEEeCCCc-EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC-----CcEEEEEecCccccccccccccc
Q 001318 576 FLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 576 l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
++.+-.-|+ ..++|....+...++.........-.-.|||||.+|+..-+| |.|-|||...+.+.+-.+..|.-
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi 162 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI 162 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence 333444444 567888888777766544332223346799999999976443 78999999876555554443322
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee--------ecccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW--------KLTEL 721 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w--------~~~~~ 721 (1101)
. .-++...+|++.++.+.. -|+.- +++.+
T Consensus 163 G-----------------------------------------pHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM 199 (366)
T COG3490 163 G-----------------------------------------PHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM 199 (366)
T ss_pred C-----------------------------------------cceeEEecCCcEEEEeCC--ceecccccCccccchhhc
Confidence 1 223455667777766542 22221 23322
Q ss_pred CCC---------ccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccC-CCCceeeeecCccccCCC
Q 001318 722 SEP---------NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 722 ~~~---------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~lw~~~~ 791 (1101)
+.. ..+....+|...+...|..++..+||+.++.+--.|. ..+.. ..+.......++..+...
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCH
Confidence 221 1222333443346677888888888884443321111 00000 000000111122233322
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 869 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 869 (1101)
.+... ....|-+++.+.+..+++..+ .+...+||..+|..+..-.- ..+..++-.. + =+++.+.+|
T Consensus 273 e~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~--~-gf~vssg~G 340 (366)
T COG3490 273 EQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK--G-GFAVSSGQG 340 (366)
T ss_pred HHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc--C-ceEEecCCc
Confidence 22211 244577889888888888777 46789999999988765331 1222333332 2 244455678
Q ss_pred eEEEEE
Q 001318 870 SIQIYN 875 (1101)
Q Consensus 870 ~v~vwd 875 (1101)
.+.++.
T Consensus 341 ~~~~~s 346 (366)
T COG3490 341 RIIFYS 346 (366)
T ss_pred eEEecc
Confidence 888774
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.28 E-value=0.099 Score=59.95 Aligned_cols=239 Identities=12% Similarity=0.096 Sum_probs=127.2
Q ss_pred eeEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEecc-----------C
Q 001318 808 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S 869 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~d-----------g 869 (1101)
+....+||||+++|.+- +| .|+++|+.+++.+... .. .....+.|.+ |++.|+....+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999999766432 21 1123499999 65555444322 2
Q ss_pred eEEEEEeecceE--eeeecCcccC--eeEEEEcCCCCEEEEEeCC----CceEEEeCCCcc--cccceeeecCCCCCCCC
Q 001318 870 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 870 ~v~vwd~~~~~~--~~~l~~h~~~--V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 939 (1101)
.|+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.++..+. ......+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 477777765421 2233333322 5688899999998754332 346777777641 11222222211
Q ss_pred CCCeEEEEcCCCcEEEEE----eCCeEEEEEcCCcee---eeeccCCCCCC--CeeEEEEcCCCCE-EEEEEcCCe--EE
Q 001318 940 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDAT--VC 1007 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~----~d~~v~vwd~~~~~~---~~~~~~~~h~~--~i~~l~~spdg~~-l~s~s~dg~--v~ 1007 (1101)
..+....-+..+.+++.+ .++.|...++.+... ...+. .|.. .+..+.. .+.+ ++....++. |+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 123333333355454443 345787788877653 22333 3333 4555554 3444 445555554 88
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC---CcEEEEeccCCC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---g~v~vW~~~~~~ 1068 (1101)
++++..+.....+. ++.. +.+. .+...+....+.++.+.- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998444444444 2211 1122 444444333444444433 578888888887
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.25 E-value=0.0085 Score=70.98 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC-eEEEeeeec---CCccEEEEEecCCcEEEEecCCCCceeee-cC
Q 001318 464 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EA 538 (1101)
Q Consensus 464 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~---~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~ 538 (1101)
++.++|........|+-.|++.|+.+..+..|... |..++-... -+..-.+.|-.++.+..||.+-.+..... ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34434555566788999999999999999887654 666652211 01234566777889999999864321110 00
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
+ .+ .++..+.|++-+.+| +|++|+.+|.||+||--..+....+++-+ .+|.+|..+.||+
T Consensus 572 k---------------~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 K---------------QY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred c---------------cc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 0 00 122345555555554 59999999999999954333333444333 4799999999999
Q ss_pred EEEEEeCCCcEEEEEec
Q 001318 619 LLAVSTNDNGIKILATS 635 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~ 635 (1101)
++++.+. ..+.+++..
T Consensus 632 wilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 632 WILATCK-TYLLLIDTL 647 (794)
T ss_pred EEEEeec-ceEEEEEEe
Confidence 9987764 677777753
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.18 E-value=0.16 Score=54.43 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=126.5
Q ss_pred ecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee--------
Q 001318 814 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-------- 885 (1101)
Q Consensus 814 s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-------- 885 (1101)
...++.|+.|.++.|.+++........... +...|..+...+ +-+.|++-+ |+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 346788999995449999993333222222 223399999998 544444433 599999998764333210
Q ss_pred ------cCcccCeeEEE--EcCCC-CEEEEEeCCCceEEEeCCCcccc---cceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 886 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 886 ------~~h~~~V~~l~--~s~dg-~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
......+...+ -...+ .+|+.+ ..++|.+|........ ....+... ..+..++|. +..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK 150 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence 11223344444 11233 445544 4558999988764211 11222222 367888888 667
Q ss_pred EEEEeCCeEEEEEcCCceeeeeccCCCC----------CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee--ecC
Q 001318 954 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1021 (1101)
Q Consensus 954 la~~~d~~v~vwd~~~~~~~~~~~~~~h----------~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~--~~~ 1021 (1101)
++++..+...+.|+.++.....+..... ..++..+... ++.+|++- |..-.+.|. .|+... .+.
T Consensus 151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence 7777788899999997766544432111 2234444443 56777643 333333343 444332 222
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1022 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.. ..|.++++.. .+|++.+. +.|.||++.+++
T Consensus 227 W~-----------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 WS-----------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred cC-----------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 11 2244677754 46776665 559999999997
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.16 E-value=0.023 Score=67.53 Aligned_cols=148 Identities=11% Similarity=0.139 Sum_probs=98.8
Q ss_pred CCcEEEEE-eccCeEEEEEeecceEeeeecCcccC-eeEEEEcC-----CCCEEEEEeCCCceEEEeCCCcccccceeee
Q 001318 858 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 930 (1101)
Q Consensus 858 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 930 (1101)
+.++|..- .....|+-.|+..|+.+..+..|... |..++-.. ....-+.|-.+..+..||.+-.. ..+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence 44454443 35678999999999999999888754 55543321 12334556667789999987532 11111
Q ss_pred cCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 931 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 931 ~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
.............+++-+.+|...+.+.+|.||+||-. |...++..+ +-..+|.+|..+.||++|++.+ +..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11111122246678888888887777899999999954 333444332 5578999999999999988665 66788887
Q ss_pred c
Q 001318 1011 A 1011 (1101)
Q Consensus 1011 ~ 1011 (1101)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
No 373
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0024 Score=65.98 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=97.4
Q ss_pred HhHhcCcc--------ccHHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHh
Q 001318 15 LEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVK 86 (1101)
Q Consensus 15 l~~esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~ 86 (1101)
|-++|.+. .++...+++|++|+...|+..+..=...-.+. ...+-|.++.|+|+||+..+++.+|+.+.++
T Consensus 138 L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~lRlQefIELi~~~~~~~Ai~~akk 216 (389)
T KOG0396|consen 138 LGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQLRLQEFIELIKVDNYDKAIAFAKK 216 (389)
T ss_pred HHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66777766 24888889999999999888886531111111 2237899999999999999999999999999
Q ss_pred ccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-chHHH-HHHHH-HHhhcccCCccccccccCCCCC-hHHHHHHH
Q 001318 87 DLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSAR-SIMLV-ELKKLIEANPLFRDKLQFPNLK-NSRLRTLI 162 (1101)
Q Consensus 87 ~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~r-~~l~~-~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll 162 (1101)
.|.|....+.++++....+|.++...+.. .|.+ ....| +.|.+ -++++.+--- +| ..+|..+|
T Consensus 217 ~f~~~~~~~~~~Lk~a~g~laF~~~t~~s---ky~~l~~~~rw~~l~~lF~s~a~~l~~----------i~~~~~L~~~l 283 (389)
T KOG0396|consen 217 HFAPWAKSHKSDLKLAMGLLAFPKYTSSS---KYLNLLTADRWSVLADLFLSEALKLFG----------IPINPALTIYL 283 (389)
T ss_pred HHhhhhhhhHHHHHHHHHhhcCccccCcc---cccCcccHHHHHHHHHHhhHHHHHHhC----------CCCCcHHHHHH
Confidence 99999887899999999999887543222 2433 23344 33322 2233322211 22 23588888
Q ss_pred HHhHHHHHH
Q 001318 163 NQSLNWQHQ 171 (1101)
Q Consensus 163 ~qa~~~q~~ 171 (1101)
+..+..|.-
T Consensus 284 ~~GLsalKT 292 (389)
T KOG0396|consen 284 QAGLSALKT 292 (389)
T ss_pred Hhhhhhccc
Confidence 877776643
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0022 Score=70.92 Aligned_cols=95 Identities=17% Similarity=0.368 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeE-EEEEecCCCeEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 423 (1101)
...|.-+.|+|.-. |+|++..+|.|.+..+. .+.+.+ +.-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence 45678899999988 79999999999998887 444432 344555666 999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 462 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~ 462 (1101)
+|-.||+|++-|++++..+... ...-...|.++-|++
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 9999999999999998766532 222345677777753
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.045 Score=59.62 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=96.0
Q ss_pred CeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEE-----EEEecCCcEEEEecCCCCc-eeeecC
Q 001318 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGS-RVDYEA 538 (1101)
Q Consensus 465 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~~~dg~i~~wd~~~~~~-~~~~~~ 538 (1101)
..+++.++.....++--|++.|+.+..++-|.. |+-+.+.++..+..+ +.|-.|..|.-||.+-... ......
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 334677888888899999999999999987766 655666554443332 3344578888899874332 111000
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
. -.| .++..+.|.+-..+ .++++||.+|.|++||--.......+++-+. .|..|..+.+|+
T Consensus 424 ~------kqy----------~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGK 484 (644)
T KOG2395|consen 424 S------KQY----------STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGK 484 (644)
T ss_pred c------ccc----------ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCc
Confidence 0 000 01123344444433 3699999999999999733333444554444 789999999999
Q ss_pred EEEEEeCCCcEEEEEec
Q 001318 619 LLAVSTNDNGIKILATS 635 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~ 635 (1101)
+|++.+ +..+.+.++.
T Consensus 485 wil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 WILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEEec-ccEEEEEEEe
Confidence 988766 4667666653
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.07 E-value=0.077 Score=58.29 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred CeEEEEECCCCceeeEecCCCC-CeEEE---EEecC---CCcEEEEEec----------cCeEEEEEeecc----eEeee
Q 001318 826 GKISLFNMMTFKTMATFMPPPP-AATFL---AFHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 884 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~-~i~~l---~~sp~---d~~~lasg~~----------dg~v~vwd~~~~----~~~~~ 884 (1101)
+.|++.|..+.+.+.++.-... .+.++ .|..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888887766543222 34443 33321 1578888863 299999999883 12222
Q ss_pred e--cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc-cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC
Q 001318 885 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 960 (1101)
Q Consensus 885 l--~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 960 (1101)
+ ....++|++++-- +|. |+.+. .+.|.+|++...+ ........ . .+........+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~---~------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD---S------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE----B------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec---c------eEEEEEEeccccEEEEEEccc
Confidence 2 2357889998876 444 44433 4789999998866 22211111 1 22334444446677776 446
Q ss_pred eEEEEEcCC-ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 961 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 961 ~v~vwd~~~-~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
.+.++.... ...+..+..+.....++++.|-+|++.++++..+|.|.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 666654332 2222222222336678999998777899999999999999876
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.05 E-value=1.3 Score=53.73 Aligned_cols=215 Identities=14% Similarity=0.069 Sum_probs=118.5
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccC-----CeeEEEEcC----------------CCCeEEEEEecCCCc
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-----GVNDIAFSH----------------PNKQLCVITCGDDKT 477 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~-----~V~~~~~s~----------------d~~~~~l~s~~~d~~ 477 (1101)
+..|..++.++.|.-.|..+|+.+-....-..... ....+++-. .+. .++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCCe
Confidence 66777777788888888888886643211000000 011122211 233 4777888999
Q ss_pred EEEEeCCCCceEEEecCcccCeE-------------EEeeeecCCccEEEEEec----------CCcEEEEecCCCCcee
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSRV 534 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~ 534 (1101)
+.-.|.++|+.+..+. ..+.|. .+.-.+--.+..++.|+. +|.|+-+|..+++...
T Consensus 272 LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 272 LIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999999999987764 222221 000000001135666642 6889999999999888
Q ss_pred eecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE------------------eCCCcEEEEECCCCcee
Q 001318 535 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQLL 596 (1101)
Q Consensus 535 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~~ 596 (1101)
.+.......... .+.+ ..+...........++++....++.+ ...+.|.-.|+++|+..
T Consensus 351 ~~~~g~p~~~~~--~~~g-~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 351 AWDPGNPDPTAP--PAPG-ETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EEecCCCCcccC--CCCC-CEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 765321111100 0112 12221111222334444444333331 12466788899999998
Q ss_pred EEEcCCCCC-------CCcCeEEEcc-CCC---EEEEEeCCCcEEEEEecCccc
Q 001318 597 TSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 597 ~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
..++...|. ....-+.+.. +|+ .++.++.+|.+.++|-++|+.
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 888753221 0011122333 553 888999999999999999943
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.14 Score=56.33 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=119.6
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE---EecC----CCeEEEEEc----------CCe
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPD----GSLFGVAYS----------RHI 430 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spd----g~~las~~~----------d~~ 430 (1101)
..|++.|..+.+.+....++ ....|.+++ |..+ ..+|++|.. .|.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 46788888888877655443 122344443 3332 567887753 289
Q ss_pred EEEEEccCC----ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc-eEEEec-CcccCeEEEee
Q 001318 431 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCP 504 (1101)
Q Consensus 431 i~iwd~~~~----~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~v~~ 504 (1101)
|.++++... ..++..... ...++|++++-- .+. ++++. .+.|.+|++...+ .+..-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999984 234333222 357889999876 333 33333 3789999998888 443222 12235555553
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
.. ++++.|...+.+.++.++...... .-++-... ...+..+.+-++++.++++..+|.
T Consensus 138 --~~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 138 --FK--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp --ET--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred --cc--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence 23 489999888888887655422111 11111111 112334444434457888999999
Q ss_pred EEEEECCC-------C--ceeEEEcCCCCCCCcCeE---EEcc--CC------CEEEEEeCCCcEEEEEe
Q 001318 585 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 585 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iw~~ 634 (1101)
+.++.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|...-.
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 99887752 2 22222221211 235555 4444 12 24888889999985543
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.95 E-value=0.31 Score=53.99 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=61.1
Q ss_pred EEEEecCCCeEEEEEcCCeEEE---EEccC-C--ce---eeeeeeecccc-CCeeEEEEcCC---C------CeEEEEEe
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 472 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~~~~s~d---~------~~~~l~s~ 472 (1101)
.++.+|+|++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.|-|- . ...+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988887776 64421 1 11 11111222111 46777776442 1 12289999
Q ss_pred cCCCcEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 473 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 473 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999999 6888776655688888887653
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.3 Score=52.18 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=131.4
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCe
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 430 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~ 430 (1101)
-.|.|+...|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .-
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g 86 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HG 86 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--cc
Confidence 35677777777787778899999998775432 11 223445555555555555543 33
Q ss_pred EEEEEccCCceeeeeeeec-cc-cCCeeEEEEcCCCCeEEEEEecC------C---CcEEEEeCC-CCceEEEecCcccC
Q 001318 431 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP 498 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~-~h-~~~V~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~~ 498 (1101)
+.+++.+++.......... +. ...-+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 6777776665433222222 22 24567889999998 3333222 0 112445444 57777777766667
Q ss_pred eEEEeeeecCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
-+.++|++ |++.++.+.. .+.|.-|++...... .... ... .......+..-.++...+|++.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEEE
Confidence 78899865 4455555544 577877777631100 0000 000 11111112233456666777665
Q ss_pred EEeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001318 578 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 625 (1101)
Q Consensus 578 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 625 (1101)
++...| .|.+|+.+ ++.+..+.... ..+.+++|-- +.+.|++.+.
T Consensus 229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 544444 89999998 88888887663 2477788854 4555554443
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.0024 Score=43.78 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.3
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
+++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.51 Score=48.27 Aligned_cols=187 Identities=9% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCeeEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. ++++....-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34456788888888777766 44 699999999987766442222 12334444 45666667789999999999998
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++.- .+.=+.++ .||+.|+.......+.++|.++-+..... .+..+..+ -..+.-+-+- +|...|-. ..
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i--~V~~~g~p-v~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI--QVTDNGRP-VSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE--E-EETTEE----EEEEEEE-TTEEEEEETTS
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE--EEEECCEE-CCCcEeEEEE-cCEEEEEeCCC
Confidence 8888864 34567787 46777777766777999998875543322 22221110 1233445554 66655554 67
Q ss_pred CeEEEEEcCCceeeeeccCC----------C---CCCCeeEEEEcCCCCEE-EEE
Q 001318 960 TQLAIFETTKLECVKQWVPR----------E---SSAPITHATFSCDSQLV-YAC 1000 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~----------~---h~~~i~~l~~spdg~~l-~s~ 1000 (1101)
..|...|..+|+.+..+... . ...-...+|+.|....| +||
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 78888999999987765321 0 13468899998866654 444
No 383
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.76 E-value=0.6 Score=51.84 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=56.3
Q ss_pred EEEEecCCCEEEEEeCCeEE----EEECC-CC----ceeeE----ecCCC-CCeEEEEEecC----------CCcEEEEE
Q 001318 810 CFALSKNDSYVMSASGGKIS----LFNMM-TF----KTMAT----FMPPP-PAATFLAFHPQ----------DNNIIAIG 865 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~----vwd~~-~~----~~~~~----~~~~~-~~i~~l~~sp~----------d~~~lasg 865 (1101)
.++.+|++++||.+....+. .|+.. .+ ..... +.... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 57889999999999854433 35331 11 11111 22111 45776665432 46899999
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
..+|.|++|.. +|.++..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999995 566555545577777777764
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.65 E-value=0.45 Score=50.50 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=80.8
Q ss_pred cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC-C
Q 001318 843 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-D 919 (1101)
Q Consensus 843 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~-~ 919 (1101)
....+.+..+..++ |+++++++..-..+.-||--. ..... ..-+.+|.+|.|+||+.+.+.+ ..|.|+.=+. .
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 34456788888898 999999886655556776432 22222 2245789999999998776644 7787877762 2
Q ss_pred CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeecc-CCCCCCCeeEEEEcCCCCEEE
Q 001318 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..+.-......... ....+..++|.+++...|++..+.+ +.....|+.-..-. ...-...++.+.|.++.+-++
T Consensus 217 ~~~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 217 DGETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEEEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CccccccccCCccc----CceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 21110000011111 1134789999999999998888755 34444444322221 112255788999987766666
Q ss_pred EEEcCCeEEEE
Q 001318 999 ACFLDATVCVF 1009 (1101)
Q Consensus 999 s~s~dg~v~vw 1009 (1101)
.| .+|.|--|
T Consensus 292 lG-~~G~ll~~ 301 (302)
T PF14870_consen 292 LG-QDGVLLRY 301 (302)
T ss_dssp E--STTEEEEE
T ss_pred EC-CCcEEEEe
Confidence 55 78887655
No 385
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.63 E-value=0.96 Score=49.60 Aligned_cols=241 Identities=13% Similarity=0.099 Sum_probs=119.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCce---eeEe----cCCCCCeEEEEEecC---CCcEEEEEecc--------
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 868 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d-------- 868 (1101)
..++|+|.|||+++++-..|.|++++ ..+.. +..+ .........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 36789999999988876699999999 44443 2222 223456889999992 14444433321
Q ss_pred CeEEEEEeecc-------e-EeeeecC---cccCeeEEEEcCCCCEEEEEeCCCc-----------eEEEeCCC-ccccc
Q 001318 869 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQ-----------LCVWSSDG-WEKQK 925 (1101)
Q Consensus 869 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D~~-----------v~iwd~~~-~~~~~ 925 (1101)
..|.-|.+..+ + ++..+.. ..-.-..|.|.|||.+.++.+..+. -+|+.+.. +....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24444444332 1 1112221 1123456999999988887765443 12222211 00000
Q ss_pred c---------eeeecCCCCCCCCCCCeEEEEcCC-CcEEEE--EeCCeEEEEEcCCceee--------------------
Q 001318 926 N---------RFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV-------------------- 973 (1101)
Q Consensus 926 ~---------~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~--~~d~~v~vwd~~~~~~~-------------------- 973 (1101)
. .......|. .....++|+|. |.+.++ +.+..=.|.-+..+.-.
T Consensus 162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0 000000011 12367899999 777776 44433333333322110
Q ss_pred -------eeccCCCCCCCeeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceE
Q 001318 974 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039 (1101)
Q Consensus 974 -------~~~~~~~h~~~i~~l~~sp-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1039 (1101)
..+.. .+...+..+.|-. .|.++++.-..+.|....+.++..+.... ..+ . .....++.
T Consensus 238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~ 310 (331)
T PF07995_consen 238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD 310 (331)
T ss_dssp S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence 00001 1235667777753 45566666666778888877553332211 011 1 11134668
Q ss_pred EEEeCCCCCEEEEEecCCcEE
Q 001318 1040 IAAHPQEPNEFALGLSDGGVH 1060 (1101)
Q Consensus 1040 i~~~~~d~~~l~s~~~dg~v~ 1060 (1101)
+++.| ||.+.++.+.+|.|+
T Consensus 311 v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEET-TSEEEEEE-TTTTEE
T ss_pred EEEcC-CCeEEEEECCCCeEe
Confidence 99999 788888888888764
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.63 E-value=2.7 Score=51.15 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred CeEEEEEcCCceeeeeccCCCCC----------------CCeeEEEEcCCCCEEEE-EEcCCeEEEEEcCCceeeeecCC
Q 001318 960 TQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~----------------~~i~~l~~spdg~~l~s-~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
|.|.-+|+.+++.+-......+. .+...=...-.|.+++. |+.|+.++-+|.++|+.+-+.+
T Consensus 641 G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~- 719 (764)
T TIGR03074 641 GYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR- 719 (764)
T ss_pred EEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee-
Confidence 67889999999877554432110 01111112235667665 7899999999999999998877
Q ss_pred CcccCCCCCCCCccceEEEEe-CCCCCEEEEE
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAH-PQEPNEFALG 1053 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~-~~d~~~l~s~ 1053 (1101)
++.+ +...=+.|. .+..+|++..
T Consensus 720 ---l~~~-----~~a~P~tY~~~~GkQYVvi~ 743 (764)
T TIGR03074 720 ---LPAG-----GQATPMTYMGKDGKQYVVIV 743 (764)
T ss_pred ---CCCC-----cccCCEEEEecCCEEEEEEE
Confidence 5554 222235565 4233455543
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.047 Score=64.69 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=70.9
Q ss_pred EEEEEecCCcEEEEeCCCcce-eEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccC
Q 001318 360 LLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 438 (1101)
.++.|+..|.|...|+.+.-. .+ | -..-.++|++++|+.||++++.|-.+|.|.+||+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~------~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLH------Q-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhh------c-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 488888889999888865311 11 0 112257999999999999999999999999999999
Q ss_pred CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 439 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 439 ~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
++.++.+.........|..+.+..++. .++++...|. +|.+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 887764433222222444455555665 6788877776 5654
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0085 Score=66.50 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=77.0
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeE-EEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
...+.-+.|+|.-..+|.+. +|.|.+..+. .+.+.++.-+...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45678899999999999998 8999999988 888889887777777 999999 8999999999999999999998766
Q ss_pred eee-cCcccCeeEEEEc
Q 001318 883 SKL-KGHSKRITGLAFS 898 (1101)
Q Consensus 883 ~~l-~~h~~~V~~l~~s 898 (1101)
... ..-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2234567777775
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.52 E-value=0.23 Score=58.76 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=113.8
Q ss_pred eEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEecc------CeEEEEEeecce--EeeeecCcccCeeEEE
Q 001318 827 KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~~~~l~~h~~~V~~l~ 896 (1101)
.+..||..+.+... .+..... -.+++. - ++.++++|+.+ ..+..||..+.. .+..+.........+.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 46678877654321 1211111 122333 3 67888888854 357788877653 2222221111222222
Q ss_pred EcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC-----------
Q 001318 897 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------- 959 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d----------- 959 (1101)
-+|+..+.||.++ ++..||..+.+-.....+..... ....+ .-+|+..+.| .+
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~------~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS------SYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc------cccEE--EECCEEEEEeCCCccccccccccc
Confidence 3678888888764 37789887643211111111110 11122 2356666664 22
Q ss_pred ------------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC------CeEEEEEcCC-ceeeeec
Q 001318 960 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1020 (1101)
Q Consensus 960 ------------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d------g~v~vwd~~~-~~~~~~~ 1020 (1101)
..+..||..+.+-...-... ......-+..-+|+..+.|+.+ ..|..||..+ .+....-
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 35778998877654322211 1111111223367777777654 2467899887 4443211
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC--cEEEEeccCCCccccCCCCCC
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVD 1078 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg--~v~vW~~~~~~~~~~~~~~~~ 1078 (1101)
. ++.. .....++-. ++++.++|+.|| ++..+|+.+.+ |....|.-
T Consensus 498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~ 544 (557)
T PHA02713 498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQH 544 (557)
T ss_pred c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhc
Confidence 1 2211 111123332 578999999998 77778887755 66655543
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.54 Score=48.04 Aligned_cols=199 Identities=14% Similarity=0.185 Sum_probs=119.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc-ccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~ 815 (1101)
-...+.+++|+|+.+.|++......-.||=. .+|.++.. .+.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence 4455999999999999999888766555422 23433322 2222 34456788888
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEe----------cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce-E--
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-V-- 881 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~-- 881 (1101)
+|+++++-- ++.+.++.+.....+..+ .......-.++|+| ..+.|..+-+-.-+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888887776 788888877654322211 11144678899999 55666666666777777665322 1
Q ss_pred eeeecCc-------ccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC---CCCCCCeEEEEcCC
Q 001318 882 KSKLKGH-------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQFHQD 950 (1101)
Q Consensus 882 ~~~l~~h-------~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~d 950 (1101)
+.....+ -..|.++.|.+. +.+||-+.+++.+.-.|....-. ..+....|.. ........++..++
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence 1111112 234677788754 56677777777777777766431 1222222221 11124467888888
Q ss_pred CcEEEEEeCCeEEE
Q 001318 951 QIHFLVVHETQLAI 964 (1101)
Q Consensus 951 g~~la~~~d~~v~v 964 (1101)
|...+++.-+-...
T Consensus 295 g~lYIvSEPnlfy~ 308 (316)
T COG3204 295 GNLYIVSEPNLFYR 308 (316)
T ss_pred CCEEEEecCCccee
Confidence 88777765554433
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.44 E-value=0.17 Score=43.82 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=47.6
Q ss_pred eeEEEE---cCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 455 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 455 V~~~~~---s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
|++|++ ..||.. .|+.|+.|..|+||+ ....+..+. ....|.+++-. .. ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~--~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSL--GG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEc--CC-CEEEEEecCCEEEEEeC
Confidence 455554 445555 799999999999997 446677776 45567777743 22 57889999999988865
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.042 Score=65.06 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
-+.+++.|+..|.|-..|+.+. +++...-..-.++|++++|+.+|+ .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667899999999999998774 222111222356999999999999 788899999999999999999999988888
Q ss_pred CeEEEeeee-cCCccEEEEEecCCcEEEEecC
Q 001318 498 PVYSVCPHH-KENIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 498 ~v~~v~~~~-~~~~~~l~s~~~dg~i~~wd~~ 528 (1101)
+++++-+.. ..++..++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 877765432 233346888877776 56543
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.43 E-value=0.074 Score=59.10 Aligned_cols=160 Identities=13% Similarity=0.142 Sum_probs=90.3
Q ss_pred CCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeecceEeeeecCcccCeeEEEEcCC----CCEEEEEeCCCceEEEeCC
Q 001318 846 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~D~~v~iwd~~ 919 (1101)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|+|- -..|...-.-+.|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 35678899984 444444432 344444322 2334444 34889999985 3345555667789999987
Q ss_pred Ccccccce--eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCE
Q 001318 920 GWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 996 (1101)
Q Consensus 920 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~ 996 (1101)
........ .-++-.-..+-+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|.+||+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 32221111 11111111111122356889999999988 4444334555543322222222 22678999999999998
Q ss_pred EEEEEcC-CeEEEEEcCCc
Q 001318 997 VYACFLD-ATVCVFSAANL 1014 (1101)
Q Consensus 997 l~s~s~d-g~v~vwd~~~~ 1014 (1101)
|+++-.. =.-+|||-...
T Consensus 170 LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEeCCeEEEEEecCchh
Confidence 7765433 34788986544
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.41 E-value=1.4 Score=48.22 Aligned_cols=111 Identities=20% Similarity=0.263 Sum_probs=58.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCeEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLFG 423 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~la 423 (1101)
..+.|+|.|||+ +++ +...|.|++++ ..+.... .+. ++ ..+..........++++|+ ..+|.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v~--~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PVA--DL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EEE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--eec--cc--------ccccccccCCcccceeccccCCCCEEE
Confidence 468999999998 344 56699999999 4444311 110 00 1234555678899999994 33443
Q ss_pred E-EEcC--------CeEEEEEccCC-cee---eeee-eec---cccCCeeEEEEcCCCCeEEEEEec
Q 001318 424 V-AYSR--------HIVQIYSYHGG-DEV---RQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 424 s-~~~d--------~~i~iwd~~~~-~~~---~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
+ .+.. ..|.-|....+ ..+ +.+. .+. .....-..|+|.|||. |++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 3 3321 24555555544 111 1111 111 1234567799999995 3555544
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.41 E-value=0.44 Score=56.23 Aligned_cols=235 Identities=9% Similarity=0.069 Sum_probs=129.5
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEecc-C-----eEEEEEeecce
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVDE 880 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~~ 880 (1101)
..+..+++|+ . ..+..+|..++.......- ....-.++++. ++.+.++|+.| | .+..||..+++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3445566665 3 3588899887644332221 12223445554 57899999988 3 67788877643
Q ss_pred --EeeeecCcccCeeEEEEcCCCCEEEEEeCCCc-----eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 --VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 --~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+..+...........+ +|...|+||.||. +-.||..+.+-.....+... .-..-...-+|+.
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL 430 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence 23333322222222222 7888999999964 67777776442211111111 1122233446666
Q ss_pred EEE-EeC------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceeeeecC
Q 001318 954 FLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 954 la~-~~d------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-----v~vwd~~~~~~~~~~~ 1021 (1101)
.++ |.+ ..+..||..+++....-.... ...-..++ .-++.+.+.|+.|+. |..||..+.+....-
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~- 507 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA- 507 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence 666 323 468899998877654432211 11112233 236778888887763 788998887665331
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC-----cEEEEeccCCCccccCCCC
Q 001318 1022 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~~~~ 1076 (1101)
.++.. .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 ---~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 ---PMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ---cCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 12222 111122322 567888999887 57788777755 544433
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.40 E-value=0.22 Score=43.15 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=66.5
Q ss_pred eEEEEEec-CC---CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 410 VNRVIWSP-DG---SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 410 V~~l~~sp-dg---~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|++++-...++ ++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 66777776 33 5799999999999998664 333 233 246788888777654 888999999999973
Q ss_pred CceEEEecCcccCeEEEee-eecCCc-cEEEEEecCCcEE
Q 001318 486 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK 523 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~-~~~~~~-~~l~s~~~dg~i~ 523 (1101)
...+...+.. ..+.++++ ....+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3334444432 23555553 222222 2577887777763
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.056 Score=58.95 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=100.0
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC--EE-----EEEeCCCceEEEeCCCcccccceeeecC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VL-----VSSGADSQLCVWSSDGWEKQKNRFLQIP 932 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~l-----~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 932 (1101)
-+|..+.....++--|++.|+.+..++-|.. |+-+.+.|+.+ .| +.|=.|..|.-||.+-.... .+...
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~ 422 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVV 422 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeee
Confidence 3455556667888889999999999998877 88888888753 22 23445777999998743221 22222
Q ss_pred CCCC-CCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 933 TGRT-PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 933 ~~~~-~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
+++. .....-.|.+-..+|..++.+.+|.|++||- .+...++..+ +-..+|..+..+.||++|++.+ +.++.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 1113456667777777666689999999998 5655555443 6688999999999999988554 667777765
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.37 E-value=0.51 Score=49.38 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=89.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCe--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE-eecce
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~ 880 (1101)
..+.+.++++|++.+|... ++. ++++.. +....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 555544 33333322 233788889999 677777777677767764 23332
Q ss_pred Ee-eeecC--cccCeeEEEEcCCCCEEEEEe---CCCceEEEeCCCcccc----cceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 881 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ----KNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 881 ~~-~~l~~--h~~~V~~l~~s~dg~~l~s~s---~D~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.. ..+.. -.+.|+++.+||||..+|... .++.|.+=-+...... .......... ....+..+.|.++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD 176 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence 21 11111 112899999999999888665 3466776655432222 1111111111 1147889999999
Q ss_pred CcEEEEE
Q 001318 951 QIHFLVV 957 (1101)
Q Consensus 951 g~~la~~ 957 (1101)
+.+++.+
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 9988874
No 399
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.34 E-value=0.0079 Score=41.02 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.0
Q ss_pred ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 837 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
+....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45566777888999999999 778999999999999996
No 400
>PRK10115 protease 2; Provisional
Probab=96.31 E-value=2.8 Score=51.06 Aligned_cols=196 Identities=10% Similarity=0.026 Sum_probs=101.9
Q ss_pred CCeeEEEEecCCCEEEEEeC--C----eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc------CeEEE
Q 001318 806 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI 873 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~v 873 (1101)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999999998763 3 48999998876432221111 14599999 66655554332 36788
Q ss_pred EEeecc--eEeeeecCcccCee-EEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 874 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 874 wd~~~~--~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+++...........+....+ ....+ .
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~-~ 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSL-D 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEE-E
Confidence 888876 32333333223333 3344558887764433 4568888853321111111111111 11222 2
Q ss_pred cCCCcEEEEEeC----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 948 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 948 s~dg~~la~~~d----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+..+.+++.... ..|...++.+......+....-...|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 333333333322 23444455421112223322113478888887 34566677778875555443
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.57 Score=51.06 Aligned_cols=238 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred CCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe---
Q 001318 749 SGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--- 824 (1101)
Q Consensus 749 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--- 824 (1101)
+.++|++.+ ..+.|+|.|+.+....+.-...-. ...+... . .-.....+-.-|+|++++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe---------~~ev~~k--~---g~s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIE---------PEEVFEK--T---GLSRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE----------HHHHHHH--H----EEEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeC---------HHHHHhh--c---CCCCCceeeecCCccEEEEeccCC
Confidence 345566666 468899999865433222111100 0000000 0 012233455568998888762
Q ss_pred C----CeEEEEECCCCceeeEecCCCC---CeEEEEEecCCCcEEEEEec--------------------cCeEEEEEee
Q 001318 825 G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMD--------------------DSSIQIYNVR 877 (1101)
Q Consensus 825 d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~--------------------dg~v~vwd~~ 877 (1101)
+ |.+.+.|-++.+.......... --...-|.| ..+.+++... ..++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 5699999998888777654322 245677788 6666666541 3589999999
Q ss_pred cceEeeeecCcc--cCeeEEEEcCC--CCE-EEEEeCCCceEEE-eCCCcccccceeeecCCCCC-------------CC
Q 001318 878 VDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRT-------------PT 938 (1101)
Q Consensus 878 ~~~~~~~l~~h~--~~V~~l~~s~d--g~~-l~s~s~D~~v~iw-d~~~~~~~~~~~~~~~~~~~-------------~~ 938 (1101)
+.+.++++.--. .....|.|..+ ..+ ++.+....+|..| .-+.++-.....+.+..... ..
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 999999886432 23567777654 333 3333334444444 33444433344444433210 00
Q ss_pred CCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCc---eeeeeccCCCC--------------CCCeeEEEEcCCCCEEEE
Q 001318 939 AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES--------------SAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~---~~~~~~~~~~h--------------~~~i~~l~~spdg~~l~s 999 (1101)
+.-|+.+.+|.|.++|.++ ..|.|+.||+... +++.+....+- .+...-+..|-||+.|..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 2457999999999999995 7999999999763 33333322110 223467889999998876
Q ss_pred EE
Q 001318 1000 CF 1001 (1101)
Q Consensus 1000 ~s 1001 (1101)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 54
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.20 E-value=1.6 Score=48.59 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=107.2
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee-
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT- 779 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~- 779 (1101)
...+++-+.||.+.+++-+.......+..+-+| ..+.|.+....+++++.+..+..|..+.-....+....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP--------gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP--------GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC--------cCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 577888899999999997754322222222222 35788888888999999999998887532221111100
Q ss_pred ---------eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeE
Q 001318 780 ---------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 850 (1101)
Q Consensus 780 ---------~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~ 850 (1101)
...-..-|...-|.. --.|..+.++.....+++-+..++.+.+. +|......+-.-.+..
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~ 285 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSC 285 (418)
T ss_pred ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceee
Confidence 000011232222211 11123333333445566666777777776 3544433332222222
Q ss_pred EEEEe------cCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE---cCCCCEEEEEeCCCceEEEeCCC
Q 001318 851 FLAFH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF---SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 851 ~l~~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~---s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
...|. +..+..+++++.++++.||.= .+++-..+....+| ++.. ..-...|++-+.+|.+.+-=+-|
T Consensus 286 ~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 286 FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 22222 211235888999999999963 33333333223333 3332 22345788899999998876665
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.018 Score=56.04 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCEEEEEe-CCeEEEEECCCC-ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCee
Q 001318 817 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 893 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~ 893 (1101)
+.-+++|. +|.|++|+..-. .....+......|.++.-.-+++.+..+++.||.||.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 899999987622 22222222233344433333366799999999999999999998888887787 5666
Q ss_pred EEEEcCCCCEEEEE--eCCCceEEEeCCC
Q 001318 894 GLAFSHALNVLVSS--GADSQLCVWSSDG 920 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~--s~D~~v~iwd~~~ 920 (1101)
.+..+..++.|+++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666667777777 7777788887765
No 404
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.04 E-value=5.2 Score=48.30 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=70.6
Q ss_pred EEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEE--EEcCCceeeeecCC
Q 001318 945 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRINP 1022 (1101)
Q Consensus 945 ~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~v--wd~~~~~~~~~~~~ 1022 (1101)
.++.|...++.++-...+++||+-+.+.++......-...|+.+++ .+..+++|...-.|.. |+-+..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad- 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD- 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC-
Confidence 4666777788888888999999988777666554333567788877 4667777775555544 4544444443221
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
...|.. |. ++.+- |-+.++.+..-|.+.+-+++..-
T Consensus 1016 -D~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 -DPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred -CCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 222222 33 44444 45678888888988888875543
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.95 E-value=0.4 Score=50.20 Aligned_cols=149 Identities=15% Similarity=0.031 Sum_probs=88.3
Q ss_pred CeEEEEEecCCCcEEEEEe---ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe-CCCccc
Q 001318 848 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEK 923 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd-~~~~~~ 923 (1101)
.+.+.++++ +++.+|... ....++++.. +.....+. -...++...|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 676665544 3335555543 33233321 223688889999988777777677777774 223221
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----CCeEEEEEcC---Cc--eeeee-cc-CCCCCCCeeEEEEcC
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECVKQ-WV-PRESSAPITHATFSC 992 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~v~vwd~~---~~--~~~~~-~~-~~~h~~~i~~l~~sp 992 (1101)
.. ..+...... ..|..+.+||||..+|... +++|.+--+. .+ ..+.. .. .......++.++|.+
T Consensus 101 ~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred ee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 111111110 1689999999999999833 5677766543 22 11100 01 012246899999999
Q ss_pred CCCEEEEEEcCCe
Q 001318 993 DSQLVYACFLDAT 1005 (1101)
Q Consensus 993 dg~~l~s~s~dg~ 1005 (1101)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9998776665443
No 406
>PHA02713 hypothetical protein; Provisional
Probab=95.95 E-value=0.32 Score=57.58 Aligned_cols=189 Identities=10% Similarity=0.076 Sum_probs=98.5
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecc--
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD-- 879 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~-- 879 (1101)
-++..+++|+ + ..+..||..+..-. .+..- .......+..- ++++.+.|+.++ .+..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 3666666665 3 24778888765432 22111 11111112222 688889998764 4888998764
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----------------------ceEEEeCCCcccccceeeecCCCCC
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
..+..+.........+++ +|+..+.||.++ ++..||..+.+-.....+...
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~---- 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG---- 453 (557)
T ss_pred EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc----
Confidence 333333222222222233 678888888653 366777766432111111111
Q ss_pred CCCCCCeEEEEcCCCcEEEEE-eC------CeEEEEEcCC-ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC--eE
Q 001318 937 PTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TV 1006 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~~-~d------~~v~vwd~~~-~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg--~v 1006 (1101)
....-+..-+|+..++| .+ ..+..||..+ .+-...-...........+.+ +|+..++|+.|+ .+
T Consensus 454 ----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 454 ----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred ----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 11111223345555554 22 2467899987 444332222121222222333 788889999888 78
Q ss_pred EEEEcCCceee
Q 001318 1007 CVFSAANLKLR 1017 (1101)
Q Consensus 1007 ~vwd~~~~~~~ 1017 (1101)
-.||..+.+-.
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88888877654
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.84 E-value=4.4 Score=45.81 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCeeEEEEcCCCCeEEEEEec--CCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC--CccEEEEEecCCcEEEEecC
Q 001318 453 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~~l~s~~~dg~i~~wd~~ 528 (1101)
.+|..++|. ||++ +++|.- ..|.+++=| .+.+..| ..|..++|.+-. +...+++.-..+.|.+|-+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999997 7886 555542 233333222 2233333 458888887642 22357777778999999875
Q ss_pred CCCcee--eecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEEcCCC
Q 001318 529 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG 603 (1101)
Q Consensus 529 ~~~~~~--~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 603 (1101)
...... -+......+ ..+-.-|+| +.|+|....|++-.....-.++++... +....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 321110 000000000 001112222 457777666666444433344554432 333334333
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC-CcEEEEEe
Q 001318 604 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 634 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw~~ 634 (1101)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 359999999999988877533 23467763
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.80 E-value=4.3 Score=45.39 Aligned_cols=280 Identities=11% Similarity=0.058 Sum_probs=151.3
Q ss_pred CceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-----CCCEEEEEe
Q 001318 750 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS 824 (1101)
Q Consensus 750 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-----dg~~la~~s 824 (1101)
...+++|+..|.++||+.....+.+....+.. .-..+|..++.-. +...||+-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh 95 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH 95 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence 35689999999999998754443333222111 1345555555432 334666666
Q ss_pred CCeEEEEECCC--Cc-------eeeEecCCC--CCeEEEEEecCC----CcEEEEEeccCeEEEEEeecceEeeeecCcc
Q 001318 825 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 825 dg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
-.++.||.+.. +. .+..+..|. .....+++-|-+ ..+|++-+-||.+.+|+-+.......+.+.
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~- 174 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF- 174 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-
Confidence 77888887731 11 111122222 122233333322 368999999999999997765544444431
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc-------------------eeeecCCCCCCCCCCCeEEEEcCC
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-------------------RFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
---..++|.+.-..+++++.+..+.-|....-..... .-....-|.. .-.|..+.++..
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~ 252 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS 252 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence 1123467888888899999988888887532100000 0000000110 012233344444
Q ss_pred CcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEE-E----cCCCC---EEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 951 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDSQ---LVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~-~----spdg~---~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
-..+++-.+..+.+.+.. |........+. ...|++ | ..++. .++.++.++++.||.=.+...-+++.
T Consensus 253 ~~~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~- 327 (418)
T PF14727_consen 253 ESDIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP- 327 (418)
T ss_pred CceEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-
Confidence 445555556666666664 44444433322 222222 1 12222 47888999999999855444443332
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+. ...+.++.-++-...|++-+.+|.+.+-=+-+..
T Consensus 328 -----~~-----PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 328 -----HV-----PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred -----CC-----CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11 1122344333345689999999999998886655
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.89 Score=46.55 Aligned_cols=170 Identities=7% Similarity=0.047 Sum_probs=113.1
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 963 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~ 963 (1101)
+.+-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|.++++- .++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 4455556999999999999999888887777766677765555555443 33678888899888884 778888
Q ss_pred EEEcCCceeeeec-----cC--CCC-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCC---
Q 001318 964 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1032 (1101)
Q Consensus 964 vwd~~~~~~~~~~-----~~--~~h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--- 1032 (1101)
++.+.....+... .. ..+ ....-.++|+|.++.|+.+-+-.-+.||.+..+.--.... ....+..
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8877665322211 11 122 5567889999999999988887778887766332111111 1111100
Q ss_pred ---CCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1033 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ---~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
..+. ++.|.+..+.++|-+.+++.+...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0133 68888877788888888888777776544
No 410
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.78 E-value=0.55 Score=55.44 Aligned_cols=195 Identities=9% Similarity=0.057 Sum_probs=106.0
Q ss_pred eEEEEecCCCEEEEEe-C------CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEe
Q 001318 809 PCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNV 876 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~ 876 (1101)
.++++. ++...++|+ + .++..||..+.+-.. +..-...-.......-+|.+.|+|+.|| +|..||.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 344443 446666666 6 247888887766333 2111111111111111789999999997 4667777
Q ss_pred ecce--EeeeecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 877 RVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 877 ~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+.+ .+..+.........+.+ +|+..+.||.|+ ++..||..++.-.....+...... ..+ -.
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~-a~ 473 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGV-AV 473 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceE-EE
Confidence 6533 33333222222222333 688888888664 467888877654333333333322 122 23
Q ss_pred CCCcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe-----EEEEEcCCceee
Q 001318 949 QDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLR 1017 (1101)
Q Consensus 949 ~dg~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~-----v~vwd~~~~~~~ 1017 (1101)
-++...++ |.|+ +|..||..+.+....-........+....+ +++..++|+.||. |..||..+.+..
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence 34555555 4444 478899988776554322121222222232 6777788887764 777877776654
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.73 E-value=0.033 Score=39.93 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.6
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEcc
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 437 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~ 437 (1101)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.58 E-value=0.63 Score=45.56 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=84.6
Q ss_pred CCeEEEEEecCCCcEEEEEecc---------CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEE
Q 001318 847 PAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVW 916 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iw 916 (1101)
...+.-..+| +|++.+-...| |.++.|-.. ..+..+...-+--++++|+.|.+.+. +-+.+-+|.-|
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCC-CCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3455666788 88885422222 344444321 11122222223345788987776554 45567778778
Q ss_pred e--CCCcccccceeeecCCCCCC-CCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 917 S--SDGWEKQKNRFLQIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 917 d--~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
| ..+|.......+--....++ .......+++..+|.+.++. ..++|...|..+|+.+.++... ...|+|+||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 8 66665544333222221111 01123456677788877775 6789999999999999988754 78999999964
No 413
>PRK10115 protease 2; Provisional
Probab=95.51 E-value=8.6 Score=46.88 Aligned_cols=246 Identities=9% Similarity=0.044 Sum_probs=116.4
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
-.+..+.++|||++|+.+...+--.-++ +.+.++.+|..+...+.. .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 4567788999999877665432211111 123344555533322221 114599999998
Q ss_pred EEEEEe-C------CeEEEEECCCC--ceeeEecCCCCCeEEEEEecCCCcEEEEEec---cCeEEEEEee--cceEeee
Q 001318 819 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK 884 (1101)
Q Consensus 819 ~la~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~ 884 (1101)
.|+... + ..|+.+++.++ +....+...........+.+.++++++..+. ++.+.+|+.. +++....
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 777664 2 35888899887 3334444333333322333336776665543 3578888842 3332222
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCC-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCe
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQ 961 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~ 961 (1101)
+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.+. +..|+. ..++.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCCE
Confidence 221112222222 2233333333222 233444332211111112211111 1256677776 334444 35554
Q ss_pred --EEEEEcCCceeeeeccCCCCCCCeeEEEEc--CCCC-EEEEEE---cCCeEEEEEcCCce
Q 001318 962 --LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACF---LDATVCVFSAANLK 1015 (1101)
Q Consensus 962 --v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s--pdg~-~l~s~s---~dg~v~vwd~~~~~ 1015 (1101)
+.+++..++. +..+.... ...+..+.++ +++. ++++.+ .-+.+..||..+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 5555654333 23322111 1223334444 4444 444444 34568899988875
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.46 E-value=3.6 Score=49.64 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
-...|..+.++++|++++..+...|.|..+.. +..-..+++....|.|=.+.- +.+++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 34578999999999999999877777766642 111122333333333333322 222211
Q ss_pred eeecCcccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCC
Q 001318 883 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~ 920 (1101)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456778888876 47888888899999999865
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.39 E-value=5.5 Score=43.82 Aligned_cols=131 Identities=18% Similarity=0.067 Sum_probs=61.7
Q ss_pred CeEEEEECCCCceeeEecCCCC--CeEEEEEecC-CCcEEEEEe-ccCeEEEEEe-ecce----EeeeecC---------
Q 001318 826 GKISLFNMMTFKTMATFMPPPP--AATFLAFHPQ-DNNIIAIGM-DDSSIQIYNV-RVDE----VKSKLKG--------- 887 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~-d~~~lasg~-~dg~v~vwd~-~~~~----~~~~l~~--------- 887 (1101)
.++.+||+.+.+.++++.-... -...+.|..+ +..+=.+|+ -..+|..|-- ..++ .+..+..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 4699999999999999864433 2456666652 222222222 3344444433 3322 1111111
Q ss_pred --------cccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCC------------CCCCCCeEEE
Q 001318 888 --------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRT------------PTAQSDTRVQ 946 (1101)
Q Consensus 888 --------h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~ 946 (1101)
-..-|+.|..|.|.++|.... .+|.|+.||+......+.. -++.-|.. ...+...-+.
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~-gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV-GQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE-EEEE-BTTTT-B--TTS------S----EE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE-eEEEECcEeccCCCccccccccCCCCCeEE
Confidence 134589999999999987665 5899999999875432211 11111100 0112346788
Q ss_pred EcCCCcEEEEE
Q 001318 947 FHQDQIHFLVV 957 (1101)
Q Consensus 947 ~s~dg~~la~~ 957 (1101)
.|-||+.|.++
T Consensus 381 lS~DGkRlYvT 391 (461)
T PF05694_consen 381 LSLDGKRLYVT 391 (461)
T ss_dssp E-TTSSEEEEE
T ss_pred EccCCeEEEEE
Confidence 89999988763
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.16 E-value=0.061 Score=38.62 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
...|.+++|+|...+||.++.||.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 4443
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.12 E-value=5.6 Score=42.41 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=111.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec---CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceE-
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV- 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~- 881 (1101)
...++.|..+ ..+++|..+. .+.....++.-..+. .-.+....+.... ++..+++ +..|.|+ -..+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy--~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIY--RTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EE--EESSTTSSE
T ss_pred eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEE--EeCCCCCCe
Confidence 3566777543 4455555553 333333343333321 1223334444444 3444443 4445543 3322 221
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCe
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 961 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~ 961 (1101)
......-.+.+..+..++||++++++.......-||--.. ......... ...|..+.|+|++...+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 1122334567889999999999998877766678875431 111222221 14789999999999888888888
Q ss_pred EEEEE-cCCceeeee--ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 962 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 962 v~vwd-~~~~~~~~~--~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
|+.=+ ....+.... .......-.+..++|.+++...++|+ .|++. ...+.|+--.+.+.....+.. .+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n-----~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSN-----LY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS----------
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCc-----eE--
Confidence 88877 222322221 11111234589999999988877665 55443 566777766555433333322 55
Q ss_pred EEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1039 VIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
.+.|.+. +.-.+.+.+|.|.-|
T Consensus 280 ~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEET--TEEEEE-STTEEEEE
T ss_pred EEEEcCC--CceEEECCCcEEEEe
Confidence 7888763 455555678877655
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.02 E-value=3.1 Score=41.03 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=39.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 615 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 615 (1101)
++++.+|+..++.-..++|...|..+|+.+..+... ...++|++|-.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecC
Confidence 445667888888889999999999999999999866 44789999964
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.98 E-value=6.5 Score=43.97 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCeeEEEEecCCCEEEEEe------------CC-eEEEEECCC--Cce--eeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 806 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.....|+|.++|+++++-. .+ .|.+++-.+ ++. ...+.........+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887742 23 677776543 322 234443344568899998 77 444 4444
Q ss_pred CeEEEEEeec-------ce-EeeeecC----cccCeeEEEEcCCCCEEEEEeCC-------------------CceEEEe
Q 001318 869 SSIQIYNVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVWS 917 (1101)
Q Consensus 869 g~v~vwd~~~-------~~-~~~~l~~----h~~~V~~l~~s~dg~~l~s~s~D-------------------~~v~iwd 917 (1101)
...++.|... .+ ++..+.. +......++|.|||.+.++.+.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333434421 11 2222322 23347789999999887766521 2344444
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
.++++. .....+. .....++|+++|+++++
T Consensus 171 pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence 444321 1112222 23468999999998877
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=1.2 Score=42.97 Aligned_cols=178 Identities=10% Similarity=0.031 Sum_probs=98.8
Q ss_pred CCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 816 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 816 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
+|.++.+.+ ...|++||+.+++.+..-+-....+..=-...-+..+.+-.-.+|.-.+||..+.+++..+.- .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 445555554 356999999998877654322111111111110334444556788999999999888877653 3444
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~ 971 (1101)
+.++- |++-|+.++...+++.-|.++-...... ....+|..- ..+..+.| -||...|- -....|...|.++|+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCCCc
Confidence 55554 6666777766667777776653322211 111222110 01111222 14544444 355566666777777
Q ss_pred eeeeccCC----------CCCCCeeEEEEcCCC-CEEEEE
Q 001318 972 CVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1000 (1101)
Q Consensus 972 ~~~~~~~~----------~h~~~i~~l~~spdg-~~l~s~ 1000 (1101)
.+..+... .|..-...+++.|++ +++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66554322 245567889999987 556665
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.83 E-value=0.082 Score=51.60 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=60.1
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE-EEEecCCCeEEEEEcCCeEEEEEccCC
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSPDGSLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~las~~~d~~i~iwd~~~~ 439 (1101)
+++|+.+|.|.+|++........ ....-...|.+ +.--.++.+..+++.||.|+.|++.-+
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred EEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 88999999999999873211110 01111223333 333346678889999999999999887
Q ss_pred ceeeeeeeecccc-CCeeEEEEcCCCCeEEEEEe--cCCCcEEEEeCC
Q 001318 440 DEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDAT 484 (1101)
Q Consensus 440 ~~~~~~~~l~~h~-~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~ 484 (1101)
+.+. ....|. .++.....+..++ +++.. |.|..++.|++.
T Consensus 135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence 7554 233455 3444444444444 34444 556666666654
No 422
>PHA03098 kelch-like protein; Provisional
Probab=94.58 E-value=1.4 Score=52.42 Aligned_cols=189 Identities=8% Similarity=0.003 Sum_probs=93.0
Q ss_pred cCCCEEEEEe-C------CeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecce-
Q 001318 815 KNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE- 880 (1101)
Q Consensus 815 ~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~- 880 (1101)
.++..++.|+ + ..+..||..+.+.. .+.... ......+..- ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4555556554 2 24778888765542 222111 1111112223 67888888865 357778876643
Q ss_pred -EeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 -VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 -~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
....+....... +++ .-+++..+.||.+ ..+..||..+.+-..... ..... . ...+...+++.
T Consensus 371 ~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r-----~-~~~~~~~~~~i 440 (534)
T PHA03098 371 REEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH-----Y-GGCAIYHDGKI 440 (534)
T ss_pred eeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc-----c-CceEEEECCEE
Confidence 222221111111 112 2367777777742 357888887643221111 11111 1 11223335565
Q ss_pred EEEEe-C--------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 954 FLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 954 la~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
++.|+ + ..+.+||..+++....-...........+.+ ++++++.|+.+ ..|.+||..+.+..
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 55542 1 2388999988765433211111111112222 77777777654 46888988877654
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=94.52 E-value=9.1 Score=42.03 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=88.9
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEE-EEeecceEeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 923 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~ 923 (1101)
...+..+.+.+ ++.++++|. .|.++. +|- .++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776654 555543 221 1121111 12234578999999998876654 567554322333321
Q ss_pred ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccC-CCCCCCeeEEEEcCCCCEEEEEEc
Q 001318 924 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~-~~h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
.......... ....+..+++.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111000 11246789999999988888887665 34444444333221 1113467888888777776655 6
Q ss_pred CCeEEEEEc
Q 001318 1003 DATVCVFSA 1011 (1101)
Q Consensus 1003 dg~v~vwd~ 1011 (1101)
.|.|..|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888887763
No 424
>PHA02790 Kelch-like protein; Provisional
Probab=94.40 E-value=2 Score=50.03 Aligned_cols=185 Identities=10% Similarity=-0.029 Sum_probs=92.2
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecc--eEe
Q 001318 815 KNDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVK 882 (1101)
Q Consensus 815 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~--~~~ 882 (1101)
.++..+++|+ + ..+..||..+.+.... +....... +++ .- ++++.++|+.++ .+..||..++ ..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455556665 3 2477888876543222 22111112 222 23 788888888643 5778887653 333
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCC---ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 959 (1101)
..+.........+. -+|+..+.||.++ .+..||..+.+-.....+.... -...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence 33322111122222 3678888888654 4677887764322111111111 0112223456655555
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCcee
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1016 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~ 1016 (1101)
|.+.+||..+++-...-......... +++ .-+|+..+.|+.+ .+|.+||..+++.
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 35778998877654332211111122 222 2267777777754 3466777666543
No 425
>PHA03098 kelch-like protein; Provisional
Probab=94.27 E-value=2.6 Score=50.12 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=92.0
Q ss_pred CCcEEEEEeccC------eEEEEEeecceEee--eecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccc
Q 001318 858 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 924 (1101)
Q Consensus 858 d~~~lasg~~dg------~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~ 924 (1101)
++.+++.|+.++ .+..||..+.+-.. .+.........+. -+++..+.||.+ ..+..||..+..-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456666666432 46777776654321 1211111122222 367788888865 34677887764322
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe---C----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l 997 (1101)
....+... . .-.++ ..-+++..+.|+ + +.+..||..+.+-...-.... ...-.+ +..-+++++
T Consensus 372 ~~~~lp~~--r-----~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy 441 (534)
T PHA03098 372 EEPPLIFP--R-----YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY 441 (534)
T ss_pred eCCCcCcC--C-----ccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence 11111111 1 11122 223566656542 1 468899988765543221111 111112 223366776
Q ss_pred EEEEcC--------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEec
Q 001318 998 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1064 (1101)
Q Consensus 998 ~s~s~d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~ 1064 (1101)
+.|+.+ ..+.+||..+++....-. ...+.. . .. .+.+ ++++++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~--~~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--N--AS--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--c--ce--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 777643 238889988876543211 111111 1 11 2222 46777888765 46788887
Q ss_pred cCCC
Q 001318 1065 LESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
.+.+
T Consensus 511 ~~~~ 514 (534)
T PHA03098 511 KTNT 514 (534)
T ss_pred CCCE
Confidence 7654
No 426
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.22 E-value=4.6 Score=40.93 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=120.0
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccccee
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~ 928 (1101)
-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+.. .
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---~ 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---R 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---E
Confidence 45566777 78777788777888777888887665544444555667788888766654333 3554555554322 2
Q ss_pred eecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC----------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 929 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 929 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
..+...+.. .......|.+.|.+-.++..| .|++|+.. .....+.|+..|||..-+
T Consensus 139 f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 233333322 467889999999998885443 34444442 244678899999999988
Q ss_pred EEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 999 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 999 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.-.+..|...|-.++. -.++....-+..+ .+ .+--+| -+..-++....+.+..+|.++..
T Consensus 205 aslagnaiaridp~~~~-aev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGH-AEVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCC-cceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 87778888888877773 2233322222222 22 233334 45667777777777777776654
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.20 E-value=8.2 Score=40.17 Aligned_cols=228 Identities=15% Similarity=0.230 Sum_probs=128.2
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEcc------CCceeeeeeeecc-----ccCCeeEEEEcCCCCe----------E
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 467 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~----------~ 467 (1101)
.-+.|+|+|.+.+-++...-+...+||.. ..+.+. .++.. .....+.+.|+..... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999999888888888999999987 122221 12221 2245777888754331 1
Q ss_pred EEEEecCCCcEEEEeCCCCce-----EEEec-CcccCe-EEEeeeecCCccEEEEEe-cCCcEEEEecCCCCcee--eec
Q 001318 468 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 537 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~--~~~ 537 (1101)
.++.+++||+|.-|...-+.. ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 357788999999998543222 12222 112333 335554444445666554 46889988754322110 011
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-- 615 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-- 615 (1101)
.+. + -.-|.|-+-..+.+ .--+....-.++++.=+.+-.-|.|-+||. .|+.++++...+....-..++..|
T Consensus 182 DP~--i-PagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCC--C-CCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 110 0 00111111100000 000111111233333444555688999997 688888887666555667788765
Q ss_pred ----CCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 616 ----DGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 616 ----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
.+.+|+---.||+|..+|..++ +.+-.+.
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~ 288 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLL 288 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC-ceeeeec
Confidence 4778887788999999999888 4444443
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.13 E-value=8.4 Score=40.08 Aligned_cols=208 Identities=9% Similarity=0.064 Sum_probs=120.9
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEECC------CC-ceeeEecC-----CCCCeEEEEEecCCCcE------------E
Q 001318 808 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNNI------------I 862 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~~------------l 862 (1101)
...++++|.+.+.++.. .+...+||.. .. .++-++.. .....+.+.|+. ...+ +
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 56799999997777665 5889999986 12 22333432 134577788875 2222 4
Q ss_pred EEEeccCeEEEEEeecceE-----eeeec-CcccCe-eEEEEcCC--CCEEEEE-eCCCceEEEeCCCcccccceeeecC
Q 001318 863 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIP 932 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--g~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~ 932 (1101)
+.+++||+|.=|.-.-+.. ...+. ...+.| ..+++... +.+|..+ -..++|.|+|-.-..... -..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~---~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL---PGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC---CCCc
Confidence 5678999999998432211 11222 112333 45666533 4555544 357889999855422100 0000
Q ss_pred CCCC-CCCCCCeEEEEcCCCcEEEE-E-------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC-----
Q 001318 933 TGRT-PTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC----- 992 (1101)
Q Consensus 933 ~~~~-~~~~~v~~~~~s~dg~~la~-~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp----- 992 (1101)
.... +.......+.- -.++++++ + ..|.|-+||+. |..++.+...+.-...+.|+..|
T Consensus 181 ~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 0100 00000111111 12333332 2 23578999986 66666666556666778888865
Q ss_pred -CCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 993 -DSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 993 -dg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.|.+|+---.||+|..||..+|+.+..+.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 57788877789999999999999988777
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.97 E-value=8.6 Score=39.61 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=106.7
Q ss_pred CCCeEEEEEecCCCeEEEEEcCC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
..-...+.|..+|.++-+.+.-| .|+.+|+.+|+..... .+.. .----.++.. +.. +..-.=.++...+||..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-~l~~-~~FgEGit~~--~d~-l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-PLPP-RYFGEGITIL--GDK-LYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-E-TT-T--EEEEEEE--TTE-EEEEESSSSEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-ECCc-cccceeEEEE--CCE-EEEEEecCCeEEEEccc
Confidence 44567788988999988887766 6999999999865432 2332 1112223333 222 34444567889999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+-+.+.++. ..+.=+.++ .+++.|+.......|.++|..+.+....+.. ..+|.. -..+
T Consensus 119 tl~~~~~~~-y~~EGWGLt----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V----------~~~g~p------v~~L 177 (264)
T PF05096_consen 119 TLKKIGTFP-YPGEGWGLT----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV----------TDNGRP------VSNL 177 (264)
T ss_dssp TTEEEEEEE--SSS--EEE----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-----------EETTEE---------E
T ss_pred cceEEEEEe-cCCcceEEE----cCCCEEEEECCccceEEECCcccceEEEEEE----------EECCEE------CCCc
Confidence 999998886 345667777 2334566666677899998876555443321 111110 0112
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC-------------CCCCCcCeEEEccCCCEEEEEe
Q 001318 565 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-------------GGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
+-+.+- +|...+=.=....|..-|..+|+.+..+... ......+.+++.|....+.+.+
T Consensus 178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 222222 2323333335567777888888887776410 1123567899998665544443
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=93.82 E-value=13 Score=40.97 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=88.1
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEE-EeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEc
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 967 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~ 967 (1101)
.+.+.++.+.+++.+++++. .|.+.. ++-. ++ ....+... ....+..+.+.++++.++++..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 45688999999987766554 454332 2211 11 11111111 114678999999999888887777653234
Q ss_pred CCceeeeeccCC--CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 968 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 968 ~~~~~~~~~~~~--~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
+.+..-...... .....+.++.|.+++..++++ .+|.|. ...+.|+.-..++.....+.. .+ .+.|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~-----~~--~~~~~~- 312 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSN-----FY--KIVFLD- 312 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcc-----eE--EEEEeC-
Confidence 444432221111 113458889999988866654 677665 455666554443311112211 33 577765
Q ss_pred CCCEEEEEecCCcEEEEec
Q 001318 1046 EPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1046 d~~~l~s~~~dg~v~vW~~ 1064 (1101)
+ +.....+..|.|..|+-
T Consensus 313 ~-~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 P-EKGFVLGQRGVLLRYVG 330 (334)
T ss_pred C-CceEEECCCceEEEecC
Confidence 2 34556677899887764
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.82 E-value=1.2 Score=51.98 Aligned_cols=122 Identities=11% Similarity=0.160 Sum_probs=75.5
Q ss_pred ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec-CcccCeeEEEEc--CCCCEEEEEeCCCceEEEeC
Q 001318 842 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+......++-+.-|. -++.-++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|..+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 44555544445589999998876432221 346789999986 79999999999999999864
Q ss_pred CCc----ccccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEc
Q 001318 919 DGW----EKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 967 (1101)
Q Consensus 919 ~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~ 967 (1101)
... .......+... ..+. +.+|....|.++|.+++ +..+++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 211 11111111111 1222 24788999999997554 55677888864
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.75 E-value=2.3 Score=49.68 Aligned_cols=125 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC
Q 001318 453 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG 531 (1101)
Q Consensus 453 ~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 531 (1101)
....-+.-|.-++ ..+..+....+.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++--....
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3455555555566 34445556679999999887554322 35788999999999999999999999999998432110
Q ss_pred ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 532 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 532 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
.... ...-..+..+. +..++.+++....|.++|..++.+| +.+.|++-
T Consensus 108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0000 00001222222 2334445677777888876555543 46777764
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.069 Score=61.86 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=85.5
Q ss_pred CeEEEEECC--CCceeeEe-----cCCCCCeEEEEEecC--CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEE
Q 001318 826 GKISLFNMM--TFKTMATF-----MPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 826 g~i~vwd~~--~~~~~~~~-----~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
|.+.|||+. .|+....+ ......+.-+.|.|. +.-++..+..++.|++....... ...+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence 678888875 34333222 222233444444431 45678888889999887765433 255566887777665
Q ss_pred -----------EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-------CcE--EEE
Q 001318 897 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QIH--FLV 956 (1101)
Q Consensus 897 -----------~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------g~~--la~ 956 (1101)
.||||+.+|.+..||.++.|.+.-..+...+++..-..|.. ..-.|..|..+ +.+ +++
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence 47999999999999999999876443333344333332221 12233334332 222 233
Q ss_pred E--eCCeEEEEEcCCceee
Q 001318 957 V--HETQLAIFETTKLECV 973 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~ 973 (1101)
+ .+..+++|.....+|.
T Consensus 310 ttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cccCCcceeEeeccchhhh
Confidence 3 3456888887777776
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.41 E-value=0.012 Score=63.22 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=134.8
Q ss_pred EEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEE
Q 001318 742 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 821 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la 821 (1101)
....+.+.+..++.++.+..+..||-.. ..... .........++|..++..++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le-----~n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE-----LNPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc-----cCCchhHhhhhhccccchhh
Confidence 3455666666688888887777776321 11111 11334455677877777766
Q ss_pred EEe--CCeEEEEECCCCceeeEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc
Q 001318 822 SAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 822 ~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s 898 (1101)
+.. .+.+.+||+.+... .++. +....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.
T Consensus 91 vlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 654 68899999976432 2222 1122222378999 88999999999999999988776666655599999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEE---EEcCCCcEEEEEeCCeEEEE--Ec--CCce
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV---QFHQDQIHFLVVHETQLAIF--ET--TKLE 971 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~dg~~la~~~d~~v~vw--d~--~~~~ 971 (1101)
+.+ +.+.++.|..+.+-...+.... ..+ ..+... ...-..+ .|..-|..+.....+.+.+. .+ ..+.
T Consensus 169 lEd-~vil~dcd~~L~v~~qegeta~---lte-vggepd-nm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~p 242 (615)
T KOG2247|consen 169 LED-YVILCDCDNTLSVTTQEGETAS---LTE-VGGEPD-NMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEP 242 (615)
T ss_pred ccc-eeeecCcHHHHHHhhhccceee---eee-ccCccc-hhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCc
Confidence 875 5666777766554433331110 011 111100 0000011 12223333333222222111 11 1111
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
.--.+. .-.+-+.|..|--||..+. +.+-|.|.+-...++++...
T Consensus 243 val~fq--~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 243 VALQFQ--EKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred cceEee--ecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHH
Confidence 111222 2256788888888886544 66667777777888777554
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=4.3 Score=47.18 Aligned_cols=148 Identities=14% Similarity=0.223 Sum_probs=89.7
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 947 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 947 (1101)
--.|+||++ +|.++.++.-..+.+..+.|+.+ ..|+....||++.||++-+........ |.......|..+.|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRF 135 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEE
Confidence 346889886 47777665444457889999976 466667899999999987643222100 11111124555555
Q ss_pred cCCCcEEEEEeCCeEEEEEcCCc---------------eeeeecc--------------------------CCCC-----
Q 001318 948 HQDQIHFLVVHETQLAIFETTKL---------------ECVKQWV--------------------------PRES----- 981 (1101)
Q Consensus 948 s~dg~~la~~~d~~v~vwd~~~~---------------~~~~~~~--------------------------~~~h----- 981 (1101)
..+|-.+.+.++.-+.+.+.... .+-..+. ...|
T Consensus 136 f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 136 FHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred ecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCC
Confidence 55665444433332222222110 0000000 0011
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
...+..+.+||+.++|+-=..+|.|.+-+.+..+.++.++.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 25678889999999999999999999999999988888773
No 436
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.05 E-value=12 Score=39.89 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=104.1
Q ss_pred eeEEEEecCCCEEEE--Ee-C----------CeEEEEECCCCceeeEecCC------CCCeEEEEEecCCC----cEEEE
Q 001318 808 VPCFALSKNDSYVMS--AS-G----------GKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI 864 (1101)
Q Consensus 808 i~~~~~s~dg~~la~--~s-d----------g~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las 864 (1101)
|..+...+++++-+. |. + -+|.+||+.+.+.++++.-. .+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666654443 21 1 26899999999988876422 34577788876332 34444
Q ss_pred Ee-ccCeEEEEEeecceEeeeecCcc-------------------cCeeEEEEcC---CCCEEEEEeCCCceEEEeCCCc
Q 001318 865 GM-DDSSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 865 g~-~dg~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+. ..+-|.|||+.+++..+.+..+. +.+.+++.+| ||++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 43 34689999999887655543321 2366666655 666777665443 355555442
Q ss_pred ccccce---------eeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce---eeeeccCCCC-CCCeeE
Q 001318 922 EKQKNR---------FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITH 987 (1101)
Q Consensus 922 ~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~---~~~~~~~~~h-~~~i~~ 987 (1101)
-..... ..+.. |... .....++++++|..+.+ ...+.|..|+..+.- ....+..... -..+..
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~ 238 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG 238 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence 111100 00111 1000 13467899999998888 588899999998621 1111211122 346788
Q ss_pred EEEcC--CCCEEEEEE
Q 001318 988 ATFSC--DSQLVYACF 1001 (1101)
Q Consensus 988 l~~sp--dg~~l~s~s 1001 (1101)
+.+.+ +|.+.+..+
T Consensus 239 ~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 239 LKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEE-T--TS-EEEEE-
T ss_pred eeeccccCceEEEEEC
Confidence 88888 776655543
No 437
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=1.1 Score=54.20 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred CCCeeEEEEecCCCEEEEEe--C-CeEEEEECCCCceee-----EecCC------CCCeEEEEEecCCCcEEEEEeccCe
Q 001318 805 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS 870 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~ 870 (1101)
...+..+++.+|+...++.. + ..|..||+++...-. -|..| ..-..++.|.|.=--..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45567778888887766654 3 359999997543221 12222 2335677888743445667778999
Q ss_pred EEEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 871 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 871 v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|+|..+.-.. ....+ .....+++++|+|-|+.++.|-..|++.-|......+. .+..+... ....|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~--e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVE--ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcC--CCcceeEEEEec
Confidence 9988765322 12222 24566899999999999999999999998876542211 11111111 125789999999
Q ss_pred CCcEEEE
Q 001318 950 DQIHFLV 956 (1101)
Q Consensus 950 dg~~la~ 956 (1101)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.89 E-value=13 Score=44.93 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCC---CCcccccccc-cCCCCCeEEEEEecCCCeEEEEEcCCeEEE
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 433 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~d~~i~i 433 (1101)
|+.+.+||-..... ...+++.-+-.. ....++.... ..-.-.|..|.+||+|++||..|..|.+.+
T Consensus 41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 57888898765443 334444332211 1122332222 223458999999999999999998775444
No 439
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.75 E-value=4.4 Score=44.59 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=90.5
Q ss_pred EcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC------CccEEEEEecCCcEEEEecCCCCce
Q 001318 460 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 460 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~~~dg~i~~wd~~~~~~~ 533 (1101)
...++..+++..|+....++--|++.|+.+..+.-|...| +.|.|.. +.+.|+-.+ +..|.-.|.+..+..
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNK 550 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNK 550 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccCCc
Confidence 3334444466778888889999999999999998777653 4443322 223444444 444544455443322
Q ss_pred eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEE
Q 001318 534 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 613 (1101)
Q Consensus 534 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 613 (1101)
.........++.-.|+. . ......++++++..|.|++||--.......+++.+. .|..+..
T Consensus 551 i~v~esKdY~tKn~Fss----------------~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idv 611 (776)
T COG5167 551 IKVVESKDYKTKNKFSS----------------G-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDV 611 (776)
T ss_pred eeeeeehhccccccccc----------------c-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEe
Confidence 11111111111111111 1 112235799999999999999654444444444443 5788999
Q ss_pred ccCCCEEEEEeCCCcEEEEEec
Q 001318 614 NKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 614 s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+.+|+++++.+. ..+.+-|+.
T Consensus 612 ta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 612 TANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ecCCcEEEEeec-ceEEEEecc
Confidence 999999887775 567777764
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.74 E-value=18 Score=39.63 Aligned_cols=165 Identities=11% Similarity=0.100 Sum_probs=90.4
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCe------EEEEEeec--c-----eEe--eeecCccc--------CeeEEEEcCCCC
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D-----EVK--SKLKGHSK--------RITGLAFSHALN 902 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~-----~~~--~~l~~h~~--------~V~~l~~s~dg~ 902 (1101)
-+.+..+.+.+.++++++ .+++|. ++.+++.. + ... ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 456788999874555555 456666 66555543 1 011 11111111 234788888888
Q ss_pred EEEEEeCC------CceEEEeCCCcccccceeeecCC-------CCCCCCCCCeEEEEcCCCcEEEEE------eCC--e
Q 001318 903 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVV------HET--Q 961 (1101)
Q Consensus 903 ~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~------~d~--~ 961 (1101)
++++.=.+ ..|..++.+ |.......+...- ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877666 667777766 3332221111100 112233578999999999955542 222 1
Q ss_pred -------EE--EEEcCC-ceeeeecc--CCC-----CCCCeeEEEEcCCCCEEEEEE-----cCCeEEEEEcC
Q 001318 962 -------LA--IFETTK-LECVKQWV--PRE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1012 (1101)
Q Consensus 962 -------v~--vwd~~~-~~~~~~~~--~~~-----h~~~i~~l~~spdg~~l~s~s-----~dg~v~vwd~~ 1012 (1101)
++ .||..+ +.....+. ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 34 455554 32222222 111 356899999999999877432 23455565443
No 441
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.66 E-value=31 Score=42.17 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=63.2
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeEe--cCCCCCeEEEEEecCCCcEEEEEeccCeEEE--EEeecceEeeeec
Q 001318 811 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQI--YNVRVDEVKSKLK 886 (1101)
Q Consensus 811 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v--wd~~~~~~~~~l~ 886 (1101)
.|..|...++.+|-...+++||+...+.++.. +.....|+.+.+. +..+++|+..-.|.. |+-...+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 45567777888888899999999877666553 2234557777664 456777775555554 4433334332221
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.-...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 122346666665 44567766665666555544
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.53 E-value=21 Score=39.97 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=85.3
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccc
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~ 926 (1101)
...+..++ ++.++++|..-..++-||-.. .+.+. ......++++.|.+++..++++ .+|.+ +|....++.-..
T Consensus 241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 34456667 777777665443333444221 11111 2234568999999998877755 55654 344444321100
Q ss_pred -eeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeecc-CCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 927 -RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 927 -~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~-~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
........ .....+..+.|.+++..++++..|.+..-. ..|+.-.... ...-...++.+.|.++++.+++| .+|
T Consensus 316 ~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 316 FDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 01111110 011257889999999999999888776654 3333322211 12224578899998887777755 688
Q ss_pred eEEEE
Q 001318 1005 TVCVF 1009 (1101)
Q Consensus 1005 ~v~vw 1009 (1101)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.48 E-value=4 Score=45.62 Aligned_cols=149 Identities=9% Similarity=0.086 Sum_probs=78.4
Q ss_pred CeeEEEEcCCCCEEEEEe-----------CCC-ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe
Q 001318 891 RITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 958 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s-----------~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 958 (1101)
...+|+|.++|+++++-. ..+ .|.+++-..+.-..........+. .....+++.++| .+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV~~- 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYVAT- 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEEeC-
Confidence 356789999988877643 122 576666543221111111111111 245789999999 44443
Q ss_pred CCeEEEE-EcCCc-----e--ee-eeccCCC--CCCCeeEEEEcCCCCEEEEEEcC-------------------CeEEE
Q 001318 959 ETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVCV 1008 (1101)
Q Consensus 959 d~~v~vw-d~~~~-----~--~~-~~~~~~~--h~~~i~~l~~spdg~~l~s~s~d-------------------g~v~v 1008 (1101)
...|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 3445444 54321 1 11 2222210 23457889999999877655521 34555
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
++.++++.. .+. .| ...+..++|++ +++++++-..++
T Consensus 169 ~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 169 YNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCCC
Confidence 555554432 111 12 13345799998 678877655443
No 444
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=15 Score=37.95 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec---ceEeeeecCcccCe
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI 892 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V 892 (1101)
++++..+. +..++++|+.+......+..-.-.=.+-.+.- .|++..++..|.-+.++|+.+ -.+..+.......-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~ 972 (1101)
..++.| |++-..+..|+-+.|-|+.. ..-..+-++......+..+..+++-.+++....+ +.+-|..+.+.
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss 245 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS 245 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
...+-......++.--.|.=-+++...+..+.-+.+-|+.+
T Consensus 246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ceEeeccccCCcccccceecccceeeeeccccCceeEeccC
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=92.25 E-value=8.7 Score=44.74 Aligned_cols=185 Identities=8% Similarity=-0.005 Sum_probs=93.7
Q ss_pred CCcEEEEEeccC-----eEEEEEeecceE--eeeecCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCCCccccccee
Q 001318 858 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 858 d~~~lasg~~dg-----~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~~~~~~~~~~ 928 (1101)
++.++++|+.++ .+..||..+++- +..+.........+. -+|...+.||.+ .++..||..+++-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 567777787543 566788776542 223322111122222 367777888764 357778765532111111
Q ss_pred eecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC---CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 929 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 929 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d---~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
+... .-...+..-+|+..+.| .+ ..+..||..+.+-...-........ .++ ..-+|+..+.| |
T Consensus 349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence 1111 11112223456666663 32 3577899887765443221111111 122 23467766666 4
Q ss_pred eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1005 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1005 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
.+.+||..+++-... . .++...... +++.. ++++.+.||.+ .++..+|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577899887765432 1 122211111 23333 46788888865 357788887755
No 446
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.22 E-value=15 Score=37.49 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=143.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.......++.++||..-.++. .+.|--.|-.+|+....--+....-..+..-|+++.++. -+.. .|.-.|-++.+..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~~~-aI~R~dpkt~evt 137 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cCcc-eeEEecCcccceE
Confidence 345567788999998888887 677888888888877665555666677788884444443 2211 4444555444322
Q ss_pred e---eecCcccCeeEEEEcCCCCEEEEEeCC---------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 883 S---KLKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 883 ~---~l~~h~~~V~~l~~s~dg~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
. ..+.-........|.++|.+-+|+... +.|++|+... | .....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECCC
Confidence 1 122234557788899999888887532 3455555433 2 24578899999
Q ss_pred CcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCC
Q 001318 951 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1029 (1101)
Q Consensus 951 g~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1029 (1101)
|...+++ .++.|...|..++.......+.+-...-..+.-+|.|+.-++....+.+.-||-.+.. -..+. +|..
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPgs 274 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPGS 274 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCCC
Confidence 9988774 6667777777666332222222213334555667788888887777888888866544 22233 3321
Q ss_pred CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC-ccccCCCC
Q 001318 1030 VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1076 (1101)
Q Consensus 1030 ~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~-~~~~~~~~ 1076 (1101)
...-+ ++.-.. .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus 275 --~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 275 --KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred --CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 11122 233322 23344444455667777776655 44444444
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=3.4 Score=40.03 Aligned_cols=183 Identities=10% Similarity=0.096 Sum_probs=99.0
Q ss_pred CCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEE-EeCCCceEEEeCCCcccccceeeecCCC
Q 001318 858 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 858 d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
++.++.+.+.-| .|++||+.+++.+..-.-....+..=-...-|.++.. .=.||.-.++|.++-+.... +.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~-----~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR-----FSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc-----ccc
Confidence 567777766443 7999999988766543221112211111111222222 22467778888877432211 110
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
.=.......|++.|+.+ ....++.-|.++.....+....-.. ..+..+.|- ||...|-.-.+..|...+
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11234445566666654 4456666677665444333221112 233444443 777777666777788889
Q ss_pred cCCceeeeecCCCcccCCC----CCCCCccceEEEEeCCCCCEEEEEe
Q 001318 1011 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.++|+.+..+..+.-.+.- ...... -.|++.|+.++++++|-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvl--NGIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVL--NGIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccc--cceeecCcCCeEEEecC
Confidence 9999988877654432211 011112 37999997667777763
No 448
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.88 E-value=1.9 Score=49.20 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=55.3
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
....++++.-+|.|+.++.+..||+|++|++......+ +.....+-..+.|...| |++...|..+.-|. ++
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~d 83 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-ED 83 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-cc
Confidence 34567888888999999999999999999987644322 22233455567776555 56777788888887 66
Q ss_pred CceEEEe
Q 001318 486 GAKQYIF 492 (1101)
Q Consensus 486 ~~~~~~~ 492 (1101)
|...+.|
T Consensus 84 gvvqqqf 90 (1636)
T KOG3616|consen 84 GVVQQQF 90 (1636)
T ss_pred Ccchhhc
Confidence 6555444
No 449
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=91.72 E-value=0.32 Score=44.81 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=61.7
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..|...+|..++++--..+.....+++++|+.+....+..+++....++. .+.+=..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 8999999999999999999999999997655555567899999999998887777776665544 234446666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 66665
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.50 E-value=0.29 Score=56.97 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=96.4
Q ss_pred cCCCCcEEEEE----ecCCCeEEEEEecCCcEEEEeCCC--cceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 343 NQGSSPMSMDF----HPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 343 ~h~~~v~~~~~----spdg~~llatg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+.|-.++| +|.+.. ++ |...|||+.- |+......+++ ...-...+.-+.|.
T Consensus 130 gf~G~v~dl~fah~~~pk~~~-~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGRR-LV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWC 189 (1283)
T ss_pred cCCCCcccccccccCChHHHH-Hh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceeeec
Confidence 35677777777 344442 22 6788898753 43332222221 22222333444444
Q ss_pred ---cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE-----------cCCCCeEEEEEecCCCcEEEEe
Q 001318 417 ---PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 417 ---pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~-----------s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
++.-++..+-.+++|++..+.+... . .+.+|...+..++| ||||+ .++.++.||.++.|.
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceee
Confidence 4777888888899999888776433 1 25578888777765 78888 788888888888776
Q ss_pred CC-----CCceEEEecCcccCeEEEeeeecCC---------ccEEEEEec-CCcEEEEecCCCCce
Q 001318 483 AT-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR 533 (1101)
Q Consensus 483 ~~-----~~~~~~~~~~h~~~v~~v~~~~~~~---------~~~l~s~~~-dg~i~~wd~~~~~~~ 533 (1101)
+. ..+|++.++.|++.-. +||....+ -.++++++. ...+++|.....++.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 53 2345556666763322 33332221 123444443 456888876554444
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.43 E-value=28 Score=39.03 Aligned_cols=151 Identities=9% Similarity=-0.021 Sum_probs=84.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce
Q 001318 892 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 971 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~ 971 (1101)
...+..++||.+++.+.....++-||--.. ....+.... ...+..+.|.++|..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445667788877776654433334443220 001111111 13678999999999998887777544 333332
Q ss_pred -----eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 972 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 972 -----~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.........-...++++.|.+|+..+++| .+|.+.... +.|+.-.+.......+ ...+ .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~-----~~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIA-----ANLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCC-----ccee--EEEEcC-C
Confidence 11222111112458999999888876655 678776654 5555544333111122 2255 788876 3
Q ss_pred CCEEEEEecCCcEEEE
Q 001318 1047 PNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW 1062 (1101)
+.....+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 445555678887655
No 452
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.79 Score=48.83 Aligned_cols=88 Identities=10% Similarity=0.206 Sum_probs=69.4
Q ss_pred HhHhcCcccc----------HHHHHHHhhcCChHHHHHHhccc-ccccCccccceehhhhHHhHHHHHhcCCCHH--HHH
Q 001318 15 LEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEALDKHDRA--KAV 81 (1101)
Q Consensus 15 l~~esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~--~Al 81 (1101)
|-+|+|...+ +.+.-+++..||-.-|++.+..- ..+.+.. . .+.|.+.++.|++++..|... +|+
T Consensus 139 l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s-~LE~~Lh~l~fl~l~~~g~~~~~eAl 216 (394)
T KOG2817|consen 139 LIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-S-SLEFKLHSLHFLSLIRGGKSDQREAL 216 (394)
T ss_pred HHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-c-cHHHHHHHHHHHHHHhcCCcCcHHHH
Confidence 8899998862 77888999999999999998764 2333322 2 278999999999999998888 999
Q ss_pred HHHHhccccccccCHHHHHHhhh
Q 001318 82 EILVKDLKVFSTFNEELFKEITQ 104 (1101)
Q Consensus 82 ~~L~~~l~~l~~~~~~~~~~L~~ 104 (1101)
+..|+.++|+......+.+.|-.
T Consensus 217 ~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 217 RYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHhcCccccchHHHHHHHHH
Confidence 99999999987655555555543
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=19 Score=42.20 Aligned_cols=172 Identities=7% Similarity=0.125 Sum_probs=89.7
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeE----ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.+..+.|+.+..++++.-+|++++|++.. ..+.. +......|..+.|.. +| +|.-..+|.+.+-+-.....+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFH-NG--VAVLTVSGQVILINGVEEPKL 160 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEec-Cc--eEEEecCCcEEEEcCCCcchh
Confidence 78889999999888888899999999863 22222 122233455555555 45 333344565555432222122
Q ss_pred eeecC---cccCeeEEEEcCCC---CEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 883 SKLKG---HSKRITGLAFSHAL---NVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 883 ~~l~~---h~~~V~~l~~s~dg---~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.++.. ..-+-+|-...+++ ..|+-.. ..+ ..+.-++... ......... ...+..+..||+.++|+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----NSSVVKISVSPNRRFLA 232 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----CceEEEEEEcCCcceEE
Confidence 22221 11111121111221 1111111 011 1112222111 111111111 14678899999999999
Q ss_pred E-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 956 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
- ...|.+.+-+.+..++...+....|. +...++|.
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc 268 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC 268 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceee
Confidence 8 78899999998888877777654433 22255554
No 454
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.23 E-value=26 Score=39.30 Aligned_cols=199 Identities=11% Similarity=-0.044 Sum_probs=104.8
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEecCCC--CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS- 889 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~- 889 (1101)
...|++.++...+|.|.-+|..++..+....... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666555558888888888887654433221 2333333343 565 6678889999999988888877665544
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeec-CCCCCCCCCCCeEEEEcCCCcEEEEEe--CCeEEEEE
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI-PTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFE 966 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~v~vwd 966 (1101)
-.+..-..-.++. +...+.|+.+...+..+++..-...... ... .+..-....++..++... ++.+.-.|
T Consensus 143 ~~~~~~~v~~~~~-v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~vy~~~~~~~~~~~a~~ 215 (370)
T COG1520 143 PYYASPPVVGDGT-VYVGTDDGHLYALNADTGTLKWTYETPAPLSL------SIYGSPAIASGTVYVGSDGYDGILYALN 215 (370)
T ss_pred eEEecCcEEcCcE-EEEecCCCeEEEEEccCCcEEEEEecCCcccc------ccccCceeecceEEEecCCCcceEEEEE
Confidence 1122222222332 2333356667666666655422211111 000 111111133444444433 55677778
Q ss_pred cCCceeeeeccC---CCCCCCe-e-EE---EEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 967 TTKLECVKQWVP---RESSAPI-T-HA---TFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 967 ~~~~~~~~~~~~---~~h~~~i-~-~l---~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.+|...-.... .+..... + .+ ..--++. +..++.++.+...|..+|+.+-++.
T Consensus 216 ~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 216 AEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred ccCCcEeeeeeeecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEe
Confidence 878777655321 0111000 0 00 0011222 3566778888889999999887776
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.21 E-value=9.9 Score=37.63 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=67.4
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECC--CCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C---eEEEE---E
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S---SIQIY---N 875 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g---~v~vw---d 875 (1101)
....++.+..+.++++++.++|.+|++. ..+...+|..- +.|..++++. .|.+|++--.+ . .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4455555554455555668889999987 44556667643 7899999999 89999986432 2 56665 2
Q ss_pred ee--cceEe-eeecCc---------------------ccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcc
Q 001318 876 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 876 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.. ..+.+ ..+-|| +.++.+++-.|- |++|+ |+ ++++.+|.+....
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQT 166 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEE
Confidence 21 11111 122232 224556666664 44444 44 5679999887643
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.81 E-value=0.69 Score=32.14 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCcEEEEEecCCC--eEEEEEecCCcEEEEeCCC
Q 001318 346 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGS 377 (1101)
Q Consensus 346 ~~v~~~~~spdg~--~llatg~~dg~i~iwd~~~ 377 (1101)
+.|.++.|||... .||+....-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 5788888889999999985
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.17 E-value=58 Score=40.54 Aligned_cols=174 Identities=10% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEECCCC---------------ceeeEecC---CCCCeEEEEEecCC
Q 001318 804 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD 858 (1101)
Q Consensus 804 ~~~~i~~~~~s---~----dg~~la~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d 858 (1101)
...+|..|+|+ . ..++|++-....+.|+...-. ..+.++.. .......++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888888 2 234777777778888872211 12223321 12356778888877
Q ss_pred CcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCC
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 938 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
.+.||+.+..|+..||++..... .+ .....+.- ...|.| +.|...-
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~-~~~~~~~~----------~~~gsi-~~d~~e~----------------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RK-SSNLRLSR----------NISGSI-IFDPEEL----------------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cC-Ccceeecc----------CCCccc-cCCCccc-----------------
Confidence 78888888889999998821110 01 11111111 112222 2222210
Q ss_pred CCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC--CCEEEEEEcCCeEEEEEcCCc
Q 001318 939 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 939 ~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd--g~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+|+ +..++.. ...|...++.+.
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 133578888898899999999999999998876442322234678999998887 3333332 367888888763
No 458
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.08 E-value=1 Score=30.88 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecC--CcEEEE
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 373 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~d--g~i~iw 373 (1101)
+........+.+|||||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566788999999999988888887 776666
No 459
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.04 E-value=5 Score=48.86 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=65.0
Q ss_pred CeeEEEEecCCC--EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~--~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...++.|.|.-- .++.-.|+.|++.-+.......+--......++++|+| .|+.+++|...|++.-|... ++....
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ 234 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE 234 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence 345566666432 23333488888887753222222112355689999999 89999999999999988743 333333
Q ss_pred ecC----cccCeeEEEEcCCCCEEEEEe
Q 001318 885 LKG----HSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 885 l~~----h~~~V~~l~~s~dg~~l~s~s 908 (1101)
+.+ ....|.+|+|-....+||+-+
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEec
Confidence 322 246899999987777777543
No 460
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=90.02 E-value=0.4 Score=44.77 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=54.8
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||+|+..|..++|..+|.+--.-+.....+++++|..+....+..+.+....++. .+.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 8999999999999999999999999998655555557788999988777665554444444433 244445666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65555
No 461
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.86 E-value=1.3 Score=30.85 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCeEEEEEecC-C--CeEEEEEcCCeEEEEEccCC
Q 001318 408 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 439 (1101)
Q Consensus 408 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~ 439 (1101)
++|.++.|||+ + ++|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58888888899999999863
No 462
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.76 E-value=17 Score=40.84 Aligned_cols=205 Identities=13% Similarity=0.078 Sum_probs=107.1
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCc--ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR 935 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 935 (1101)
+++ +.++..+|.|.-.|..+++.+-....- ...+..-.+..+|+ |+.++.++.+...|..+|+..-...... .
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~ 142 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S 142 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C
Confidence 443 444577887777777777654322111 12222323333676 6667788888888887766543332222 0
Q ss_pred CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEc--CCeEEEEEcC
Q 001318 936 TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAA 1012 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~--dg~v~vwd~~ 1012 (1101)
..+..-.+-.++..++.+.++.+...|..+++.+-...... -...+..--...++. ++.+.. ++.+.-.|..
T Consensus 143 ----~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 ----PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAE 217 (370)
T ss_pred ----eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEcc
Confidence 01222233344544444456777777777777654432211 011111111122343 344444 5677778888
Q ss_pred CceeeeecCCCcccCCCCC--CCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCC
Q 001318 1013 NLKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1076 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~ 1076 (1101)
+|...-..+.......... ...+..-.+ .. + ..+..++.+|.+.-.+..+++..|..+.+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v--~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPV-YV--D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceE-EE--C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8888766432221211100 000110011 11 1 23577788899999999999999999886
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.45 E-value=16 Score=43.52 Aligned_cols=116 Identities=8% Similarity=0.058 Sum_probs=76.2
Q ss_pred CeEEEEEec--CCCeEEEEEcCCeEEEEEccC-------C----------ceeeeeeeeccccCCeeEEEEc--CCCCeE
Q 001318 409 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL 467 (1101)
Q Consensus 409 ~V~~l~~sp--dg~~las~~~d~~i~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~~~~s--~d~~~~ 467 (1101)
.|..|.... +...|+.|.+||.|.+|.+++ . ..+++.+.+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 566666655 677899999999999997632 0 0112222233 33478899998 5555
Q ss_pred EEEEecCCCcEEEEeCCCC--ceEE-EecCcccCeEEEeeeecC---Ccc-EEEEEecCCcEEEEec
Q 001318 468 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY 527 (1101)
Q Consensus 468 ~l~s~~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~v~~~~~~---~~~-~l~s~~~dg~i~~wd~ 527 (1101)
++|.++....|.||-.... +... .-..|...|-+|+|.... +|. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888888765432 1111 111255678888887654 233 7888889999998877
No 464
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.27 E-value=9.5 Score=45.28 Aligned_cols=132 Identities=6% Similarity=0.057 Sum_probs=73.7
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCc-eeEEEEccCCceEEeccccCceeEEEEc--CCCC
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN 574 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~-v~~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~ 574 (1101)
|+.|....-.+...|+.|..||.|.+|..++--.. ......... ...+...|+ +.-.-....+.++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence 34343333355578999999999999976431100 000000000 000111121 112223366777777 6777
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEEcCCCCCCCcCeEEEccCC---C---EEEEEeCCCcEEEEEe
Q 001318 575 RFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT 634 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~iw~~ 634 (1101)
++|+++....|.||-..... .......+.+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 78888888888887654421 11111122234468899998743 2 7888899999999887
No 465
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.05 E-value=25 Score=38.52 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=94.6
Q ss_pred cccceEEEEEcCCCceEEeeecCce------EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 737 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
.-+.++.+.+.+++..+++.+.+|. +..+++..... ..........+.+-+.. |.... . ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence 3467789999977667888888777 55555433111 01111111111111111 21111 0 1225677
Q ss_pred EEEecCCCEEEEEe-C------CeEEEEECCCCceeeEec---------------CCCCCeEEEEEecCCCcEEEEEec-
Q 001318 811 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD- 867 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~- 867 (1101)
+++.++|.++++.- + ..|+.++.. |+....+. ......-+|+++| +|+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888877765 6 678888876 66554431 1234578999999 8885555542
Q ss_pred ----cC--e-------EEEE--Eeec-ceE----eeeecC-----cccCeeEEEEcCCCCEEEEE-----eCCCceEEEe
Q 001318 868 ----DS--S-------IQIY--NVRV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS 917 (1101)
Q Consensus 868 ----dg--~-------v~vw--d~~~-~~~----~~~l~~-----h~~~V~~l~~s~dg~~l~s~-----s~D~~v~iwd 917 (1101)
|+ . ++|+ |..+ ++. ...+.. ....|..+.+-+++++|+-= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4555 4443 222 223332 34568889999998877632 1234455555
Q ss_pred CC
Q 001318 918 SD 919 (1101)
Q Consensus 918 ~~ 919 (1101)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=13 Score=40.58 Aligned_cols=143 Identities=6% Similarity=0.073 Sum_probs=87.2
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
.+.+-|.. .++.| .+...|.+.=|-+... ...-.+ ....++|.++.||+|.+.||.--.|++|.+.+....+...
T Consensus 25 sngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 45566654 33333 3445566666665432 112222 2346799999999999999999999999999985433211
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYAC 1000 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~ 1000 (1101)
.. ...+......|...+|+.. .-+|...+..+.+|-+...+ .++.. ..|...|.-..|.++-+.++.+
T Consensus 103 ~~----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV--ks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 103 EY----TQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV--KSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HH----HHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh--hhcccCccEEEEccccceEeee
Confidence 11 1111111235788899877 55666667777777654332 22222 2567788888888888764433
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.66 E-value=43 Score=36.92 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=105.0
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEc----CCCCE--EEEEe-CC---CceEEEeCCCcccccce
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 927 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~--l~s~s-~D---~~v~iwd~~~~~~~~~~ 927 (1101)
...+|+....++-+.+||+. |+.++.+. .++.+.|..- -+|+. |+.++ .+ .+|++|.++.... .
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence 34566667778899999987 55566553 2344444332 13433 44444 32 4699998864211 1
Q ss_pred eeecCCC-C-C-CCCCCCeEEEE--cC-CCcEEEE--EeCCeEEEEEcC---Cc----eeeeeccCCCCCCCeeEEEEcC
Q 001318 928 FLQIPTG-R-T-PTAQSDTRVQF--HQ-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 928 ~~~~~~~-~-~-~~~~~v~~~~~--s~-dg~~la~--~~d~~v~vwd~~---~~----~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
+..+... + . .....+..+|+ ++ +|.+.+. ..+|.+..|.+. ++ +.++.|.. ...+-.+....
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD 217 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD 217 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence 1111110 0 0 11123566665 43 5665554 477888877664 22 45677764 45889999988
Q ss_pred CCCEEEEEEcCCeEEEEEcCC-----ceeeeecCCCcccCCCCCCCCccceEEEEeCC-CCCEEEEEecCCcEEEEeccC
Q 001318 993 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...+|+.+-+|.-|.-|+.+. +.++.... ...+ ...+.-+++-..++ .|.+|++.=.+++..||+...
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-cccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 888999999998888888752 23332222 1112 22355455655442 234556666678899999876
Q ss_pred CC
Q 001318 1067 SE 1068 (1101)
Q Consensus 1067 ~~ 1068 (1101)
..
T Consensus 292 ~~ 293 (381)
T PF02333_consen 292 PN 293 (381)
T ss_dssp T-
T ss_pred CC
Confidence 54
No 468
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.58 E-value=4.3 Score=43.95 Aligned_cols=170 Identities=11% Similarity=0.061 Sum_probs=93.5
Q ss_pred eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe-eee-cCccc----Cee-EEEEcCCCCEEEEEeCC
Q 001318 838 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 838 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~dg~~l~s~s~D 910 (1101)
.++.+......+..+-..| |+++|..-+. ..+.|+++.+...- +++ ....+ .|+ ++..-..|.-|..++.|
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3444555566788889999 8988877654 68889988764322 122 11111 122 22223456778888999
Q ss_pred CceEEE-eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEE
Q 001318 911 SQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA 988 (1101)
Q Consensus 911 ~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l 988 (1101)
|.|.-| |+..+..........+ .-...++..+.=..+.+-++. ..+|.+.++.....+.+-.-. --..+..+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCccee
Confidence 998877 4443322111111111 111112222221222233333 466677766554433322111 13367788
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 989 TFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 989 ~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
++||.+.+|++- +.|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCC
Confidence 999999999865 567899998876544
No 469
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.90 E-value=22 Score=41.23 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=73.6
Q ss_pred ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 867 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
..+...++|. .|.++..+.........+.+.++|.+++..+ ..+..+|+.+.. ... .....+.. ..-..+.
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~--~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWE--YDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEE--EE--TTEE----B-S-EE
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEe--eecCCccc---ccccccE
Confidence 3445555553 3444444332222222266778898887665 668888876532 111 12221100 0125678
Q ss_pred EcCCCcEEEEEe--------------CCeEEEEEcCCceeeeeccCCCCC-------------------------CCeeE
Q 001318 947 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 987 (1101)
Q Consensus 947 ~s~dg~~la~~~--------------d~~v~vwd~~~~~~~~~~~~~~h~-------------------------~~i~~ 987 (1101)
.-|+|.+|+.+. +..|..+| .+|+.+..|....|- -.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999888754 23566677 777777665432221 24788
Q ss_pred EEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 988 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 988 l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
+.+.+ |+.+|+++-.-..|...|..+++..-.+..
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 99988 666666555555899999999998877764
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.70 E-value=16 Score=42.83 Aligned_cols=211 Identities=11% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEE--------------------------------------------------
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYN-------------------------------------------------- 875 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-------------------------------------------------- 875 (1101)
.+.|.+.+||. |.+.++....+..|-+++
T Consensus 112 ~nGIvaa~wS~-DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 112 SNGIVAASWSA-DEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred cCceEEEeecc-CCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcc
Q ss_pred -eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 876 -VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 -~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+..|.+.....+. .-++|-.|..+.+.+... ..+++|.-++ +......+..+.-..+.|-|.
T Consensus 191 ~vD~G~l~avd~~k----~~i~wrgD~~y~~v~r~Ee~prra~rvysreg---------~lds~sep~~g~e~~LSWkpq 257 (1243)
T COG5290 191 MVDYGDLFAVDTNK----KIIFWRGDTEYNLVGRSEERPRRAFRVYSREG---------QLDSASEPVTGMEHQLSWKPQ 257 (1243)
T ss_pred cccccceeEeeCCc----eEEEEccCcceeeecchhcccccceeeecccc---------ccccccCCcccchhccccccC
Q ss_pred CcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc
Q 001318 951 QIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1024 (1101)
Q Consensus 951 g~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1024 (1101)
|..+++ +.|| .|..+..+..+.=.--...+-...+..++|.-....++.+ ....|.+|-..+....-+.. .
T Consensus 258 gS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e--~ 334 (1243)
T COG5290 258 GSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVE--R 334 (1243)
T ss_pred CceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEe--e
Q ss_pred ccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccCCCCCCCCCC
Q 001318 1025 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGST 1082 (1101)
Q Consensus 1025 ~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~~~~~~~ 1082 (1101)
..|.- .+ +.|+|...+.+...+ .+.|..-.+......=...-|+++|.+
T Consensus 335 ~ip~~-----s~---vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 335 QIPGI-----SY---VKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred cCCCc-----ce---eeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCce
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.06 E-value=2.5 Score=45.62 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=97.4
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCcee-eEe-cCCCC----CeE-EEEEecCCCcEEEEEeccCeEEEE-E
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 875 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d 875 (1101)
.-..+..+-..|||+++.+-+..++.++++.+.... +++ ....+ .|+ .+..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 345677888999999999988888999988754322 111 11111 122 222233 67777888999998887 4
Q ss_pred eecce-----EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 876 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 ~~~~~-----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+..+. .++.++-...+|..+.--.+.+-+++-+..|++.++.....+. ...+.. ...+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~------~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERA------YQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhh------hcCcceeeeCcc
Confidence 44321 1222222223343333333445677788888888776443221 111111 125678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCcee
Q 001318 951 QIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 951 g~~la~~~d~~v~vwd~~~~~~ 972 (1101)
+.++++-..+.++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998876544
No 472
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=85.99 E-value=1.1e+02 Score=38.75 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.8
Q ss_pred cccceEEEEEcCCCceEEeeecCceE
Q 001318 737 RATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+-..+.+++++|||..+++-..+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 55678899999999977665554333
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.74 E-value=62 Score=35.72 Aligned_cols=199 Identities=8% Similarity=0.086 Sum_probs=106.7
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEec---CCCcE--EEEEe-cc---CeEEEEEeec--ceEee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP---QDNNI--IAIGM-DD---SSIQIYNVRV--DEVKS 883 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp---~d~~~--lasg~-~d---g~v~vwd~~~--~~~~~ 883 (1101)
...+++... .+.+.+||+. |+.++.+. .+..+.+..-. -+++. ||+++ .+ ..|++|.+.. +. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 334455444 7889999996 56666664 23444443321 02332 44444 32 4799998863 43 33
Q ss_pred eecC-------cccCeeEEEEc--C-CCC-EEEEEeCCCceEEEeCCCccc--ccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 884 KLKG-------HSKRITGLAFS--H-ALN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 884 ~l~~-------h~~~V~~l~~s--~-dg~-~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
.+.. -...+..+|+- + +|. +++..+.+|.+..|.+..... .....++.+... ..+..++....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEecc
Confidence 2221 12346777773 3 454 556677889999888853221 222333333322 36788888888
Q ss_pred CcEEEEE-eCCeEEEEEcCC-----ceeeeeccCCCCCCCeeEEEEc--CCCC-EEEEEE-cCCeEEEEEcCC-ceeeee
Q 001318 951 QIHFLVV-HETQLAIFETTK-----LECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRCR 1019 (1101)
Q Consensus 951 g~~la~~-~d~~v~vwd~~~-----~~~~~~~~~~~h~~~i~~l~~s--pdg~-~l~s~s-~dg~v~vwd~~~-~~~~~~ 1019 (1101)
..+|.++ .+.-|.-|+.+. ++.+......+....|-.|++- .+++ ||++.+ .+++..||+... ...+..
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccce
Confidence 8888887 556788887752 2233222222346678888874 3443 555444 567899999875 455666
Q ss_pred cCC
Q 001318 1020 INP 1022 (1101)
Q Consensus 1020 ~~~ 1022 (1101)
|+.
T Consensus 299 f~i 301 (381)
T PF02333_consen 299 FRI 301 (381)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.62 E-value=11 Score=47.50 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=40.5
Q ss_pred EEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 944 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 944 ~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
+..+......+.....+.+-+|+.........+...++. .++++..++++..||.+..||+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 203 QVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred eeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 333333333333344445555555444443333332222 288999999999999999999999865
No 475
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.61 E-value=5.3 Score=43.43 Aligned_cols=124 Identities=10% Similarity=0.122 Sum_probs=79.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.+++|.++.||+|.+ ++|+--.|.+|.+.+....+....... ..+.-+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 457999999999999 699999999999999854332211000 12233456899999876 5566
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
.....| +-+|.+...+ +.....+.|.-.|+--.|+++..-.+|+|+-..+++.=+-++++.
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 655555 6777665432 222235568889999999999885333343344454444444443
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.69 E-value=45 Score=33.21 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=85.4
Q ss_pred cEEEEEeccCeEEEEEeec--ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEE---eCCCccccccee
Q 001318 860 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW---SSDGWEKQKNRF 928 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iw---d~~~~~~~~~~~ 928 (1101)
..|..+...+.|.+|++.. .+.+.++..- +.|..+.++..|++|+|-=.+. .+|+| +....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 4454446678899999983 4556666544 7899999999999999864332 45554 32211111110
Q ss_pred eecCCCC------------------CCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee-ee-----ecc---CCCC
Q 001318 929 LQIPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES 981 (1101)
Q Consensus 929 ~~~~~~~------------------~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~-~~-----~~~---~~~h 981 (1101)
..+ .|| .+....+.+++..|-..-|+++.++.+.+|.+..... .. .+. ...|
T Consensus 107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000 010 0112356788888877778888889999998765443 11 110 0011
Q ss_pred -CCCeeEEEEcCCCCEEEEEEcCCeEEEEEc
Q 001318 982 -SAPITHATFSCDSQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 982 -~~~i~~l~~spdg~~l~s~s~dg~v~vwd~ 1011 (1101)
.-.+..++|. +.|+|..+ +-.++|..+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 2335666663 66777665 567777654
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.50 E-value=5.5 Score=40.48 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=52.7
Q ss_pred EEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCccccccccc-------CCCCCeEEEEEecCCCeEEE
Q 001318 352 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 352 ~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las 424 (1101)
.+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++
T Consensus 17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 35667887 667788899999999998876531 1111 1122 46678999999988887776
Q ss_pred EEcCCeEEEEEccCCc
Q 001318 425 AYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~ 440 (1101)
-+ +|..+.|+.+-+.
T Consensus 84 ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 84 LS-NGDSYSYSPDLGC 98 (219)
T ss_pred Ee-CCCEEEeccccce
Confidence 55 5778888876543
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.27 E-value=26 Score=39.11 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=61.7
Q ss_pred cCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC---CEEEEEeCCC
Q 001318 507 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF 583 (1101)
Q Consensus 507 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg 583 (1101)
++.|..++-.+.+|.+.++-.+..+....+......|.|-.++- +.++|.....-.+.-++|+|+. ..++.-..|.
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-AERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-cceeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence 55667888888889877764443344444444444455544443 3356665555567778899986 6788888999
Q ss_pred cEEEEECCCCceeEEEc
Q 001318 584 SIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~ 600 (1101)
.||+||+.....+....
T Consensus 191 viRiy~lS~~telylqp 207 (741)
T KOG4460|consen 191 VIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEEecCCcchhhccC
Confidence 99999998776664443
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.23 E-value=25 Score=39.86 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=60.3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeee-cCCCCCCCCCCCeEEEEcCCC------cEEEEE--e--
Q 001318 890 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQ------IHFLVV--H-- 958 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~dg------~~la~~--~-- 958 (1101)
..-+.|+|.|||++|++--..|.|++++..++.......+. .... ........++|+|+- .+|.++ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~--~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND--AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc--CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 45688999999988877655689999986654321111111 1010 013578899999885 234332 1
Q ss_pred -------CCeEEEEEcCCc-------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 959 -------ETQLAIFETTKL-------ECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 959 -------d~~v~vwd~~~~-------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
...|.-|.+... +.+..-.+......-..|+|.|||.++++.++.
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444554321 111111111111224567899999877755544
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.23 E-value=4.9 Score=40.79 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=47.2
Q ss_pred EecCCCeEEEEEcCCeEEEEEccCCceeeeeee----ec-------cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 415 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----ID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 415 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~----l~-------~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
+..++++|++.+.+|.+++||+.+++.+..... +. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 556899999999999999999999876532211 11 2446677788887776 344444 466777775
Q ss_pred CCC
Q 001318 484 TNG 486 (1101)
Q Consensus 484 ~~~ 486 (1101)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 433
No 481
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.76 E-value=4.6 Score=39.39 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=25.6
Q ss_pred CCeEEEEEecC------CCeEEEEEcCCeEEEEEccC
Q 001318 408 VSVNRVIWSPD------GSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 408 ~~V~~l~~spd------g~~las~~~d~~i~iwd~~~ 438 (1101)
..|.+++|||- +.+||+...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 38999999994 34788889999999998664
No 482
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.30 E-value=30 Score=40.19 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=71.0
Q ss_pred EEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCC-CCeeEEEEcCCCCEEEEEEc-------------CCeEEEEE
Q 001318 945 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACFL-------------DATVCVFS 1010 (1101)
Q Consensus 945 ~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~i~~l~~spdg~~l~s~s~-------------dg~v~vwd 1010 (1101)
+.+.++|.+++... ..+..+|+. |+.+..+...+.. .-=..+..-|+|.+|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56678888877644 888888885 5555555433211 11245678899999888772 12366677
Q ss_pred cCCceeeeecCCCcccC-C----------------CCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccccC
Q 001318 1011 AANLKLRCRINPSAYLP-A----------------GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1073 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~~ 1073 (1101)
.+|+.+..+....++. . +....+...-++.+.+.++.+++++-.-..|...|..+++-.|.+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8888877665444431 1 111223445589999977667777666668999998888877777
Q ss_pred CCC
Q 001318 1074 PPP 1076 (1101)
Q Consensus 1074 ~~~ 1076 (1101)
.++
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 665
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.11 E-value=11 Score=46.99 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=91.3
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEc--------CCCCEEEEEeCCCceEEEeCCCcccccce--eeecCCCC
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR 935 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~dg~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~ 935 (1101)
+.|..+.+|+..++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+..... ....+. -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 358889999999987788888877777777643 23244444444445666655432211111 111100 0
Q ss_pred CCCCCCCeEEEEcCCCcEEEEEeCCeEE--EEEcCCc---e-eee-------------e-ccC-CCCCCCeeEEEEcCCC
Q 001318 936 TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCDS 994 (1101)
Q Consensus 936 ~~~~~~v~~~~~s~dg~~la~~~d~~v~--vwd~~~~---~-~~~-------------~-~~~-~~h~~~i~~l~~spdg 994 (1101)
..+...|.++....+|+.+.+|.||.|. +|....+ + |-+ . +.. ..+..+|..+++...-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0011467888889999999999888544 2222221 1 110 0 111 2457799999998777
Q ss_pred CEEEEEEcCCeEEEEEcCC
Q 001318 995 QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 995 ~~l~s~s~dg~v~vwd~~~ 1013 (1101)
..|.+-+.-|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 7899999999999999976
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=87 Score=38.66 Aligned_cols=249 Identities=12% Similarity=0.061 Sum_probs=115.4
Q ss_pred EEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEE
Q 001318 744 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 823 (1101)
Q Consensus 744 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 823 (1101)
.++..-|+.+.+|+.+|.+.+|.+........... .. ++ ..... .-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~--------~~-~~~~~----~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT--------ET-VKFEK----EFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc--------ch-hHHhh----hhccchhHHHhhcchhcchhee
Confidence 34455677899999999999998754322111100 00 00 00000 0135667777777777778888
Q ss_pred eCCeEEEEECCCCceeeEecCCCCCeEEEEEe--cC-CC--cEEEEEe-ccC-eEEEEEeecceEeeeecCcccCeeEEE
Q 001318 824 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQ-DN--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 824 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~-d~--~~lasg~-~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
+|+.|.++++.+.+.... ..+-.++...++. +. .+ .+.+... ... ....|+-+.+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 899999998876655211 1111111111110 00 11 1222222 111 222333322322222111222223333
Q ss_pred EcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee-e
Q 001318 897 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-Q 975 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~-~ 975 (1101)
| .|..+.++-.+....+|.-.++......+...... ..-..+.--.++..++.+.|+...+-|.......+ .
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34444444443444445444432211111111100 11234455566667777777777776754322111 1
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+. -+....++.+ +.-|+++- .++.|.||+..++.+++.+
T Consensus 238 l~---ws~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LV---WSEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eE---ecccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence 00 0112222222 45566655 4669999999999888776
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.81 E-value=39 Score=35.71 Aligned_cols=114 Identities=9% Similarity=0.121 Sum_probs=66.8
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE------cCCeEEEEEccCCce
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 441 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~i~iwd~~~~~~ 441 (1101)
..|++||..+.+-.. .-.+-.+.|+.+.|..+.+++++|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 368999988765443 1334567899999998888888774 356788999988653
Q ss_pred eeeeeeecc-----ccCCeeEEEEcCCCCeEEEEEec-CCC--cEEEEeCCCCceEEE-ecCcccCeEEEee
Q 001318 442 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI-FEGHEAPVYSVCP 504 (1101)
Q Consensus 442 ~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~-~~~h~~~v~~v~~ 504 (1101)
.. +.+ -.++|..+.+..++..-+.+.|. .++ .|..||=.+-..+.. ..+....|..+.+
T Consensus 77 ~~----~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 77 SS----LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred ee----cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 22 332 24788888885433321444443 333 466676443333322 1222334555544
No 486
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.69 E-value=75 Score=34.29 Aligned_cols=210 Identities=9% Similarity=-0.033 Sum_probs=101.7
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCe--EEEEECCCCcee---------------eEecCCCCCeEEEEEecCCCcEEEEEe
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
+...|+++.+.+..+.|++-+|.. ++++++...... ...-++.......+........++.+.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999888888765 999998532210 111123333333444431122233344
Q ss_pred ccCeEEEEEeecc----eEeeee---c-CcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCC--cccccceeeecCCC
Q 001318 867 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG 934 (1101)
Q Consensus 867 ~dg~v~vwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~ 934 (1101)
...+|.+|..... .....+ . --..++..+..+++ ...|..|+..+...++++.. ..............
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~ 200 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE 200 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence 4556666543221 111110 0 01123333333333 45666666542355555533 11111000000000
Q ss_pred CCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.. ....++..-+++.+|+ +.|.....-|....+..+.... .-...+.++++. ..+|++-. +..|.|+++.++
T Consensus 201 ~~---~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 TS---LKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred cc---cCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 00 0123333344454444 4444455555543121111110 113456777776 45666554 556999999999
Q ss_pred eeeeecC
Q 001318 1015 KLRCRIN 1021 (1101)
Q Consensus 1015 ~~~~~~~ 1021 (1101)
++++.+.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9988776
No 487
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.45 E-value=15 Score=45.84 Aligned_cols=169 Identities=13% Similarity=0.200 Sum_probs=98.7
Q ss_pred CCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 333 ~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
..|..+..-++|...-+.+-+-|.=.+.- -+.|+.+.+|+++++..... +.+-...|..
T Consensus 66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~ 124 (1311)
T KOG1900|consen 66 NIPDELLEQFSNIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAE-------------------YDGLSHTILK 124 (1311)
T ss_pred cCCHHHHHHhcCcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCcccc-------------------ccchhhhhee
Confidence 33555555555555555666666544333 35679999999998655442 3444445555
Q ss_pred EE--------EecCCCeEEEEEcCCeEEEEEccCCceeeee------eeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 413 VI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 413 l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+. |-|.=++|.+.+.--.|.|+-+.-.+..... ..+.-..-.|+|+....+|+ ++++ |.||
T Consensus 125 V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg-- 199 (1311)
T KOG1900|consen 125 VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG-- 199 (1311)
T ss_pred eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC--
Confidence 54 3344455655555566777755432211111 11222345789999888888 5555 4555
Q ss_pred EEEeC----CCC---c-e----------------EEEec-CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 479 KVWDA----TNG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 479 ~iwd~----~~~---~-~----------------~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+|.+ .+| + + +-.+. .+..+|..+.+. .....+++-+..|+|.+||+..
T Consensus 200 ~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 44543 221 1 1 01122 467788888874 4446899999999999999976
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.28 E-value=37 Score=30.88 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEE-EeCCeEEEEEcC--------CceeeeeccCCCCCCCeeEEEEcC----CCCEEEEEEcCCeEEE
Q 001318 942 DTRVQFHQDQIHFLV-VHETQLAIFETT--------KLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATVCV 1008 (1101)
Q Consensus 942 v~~~~~s~dg~~la~-~~d~~v~vwd~~--------~~~~~~~~~~~~h~~~i~~l~~sp----dg~~l~s~s~dg~v~v 1008 (1101)
|..-.|....-.|++ +.-++|.|++.. ....+..+.. ...|++|+-.+ +++=++..+....+..
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~t~lla 77 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQTSLLA 77 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEeccceEEE
Q ss_pred EEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
||+....-+..-. +++| +..+.+.-..+...-++..+.+..|.-+|-+-.|.-|
T Consensus 78 YDV~~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 78 YDVENNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EEcccCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
No 489
>PRK13615 lipoprotein LpqB; Provisional
Probab=82.16 E-value=1.1e+02 Score=35.92 Aligned_cols=153 Identities=9% Similarity=-0.022 Sum_probs=87.1
Q ss_pred eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccce
Q 001318 849 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR 927 (1101)
Q Consensus 849 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~ 927 (1101)
..+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| ++=++..+...++..... ++... .
T Consensus 336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v 409 (557)
T PRK13615 336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V 409 (557)
T ss_pred cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence 37889999 88888888778888887655 22222222 2245666777776 444444333445544332 22111 1
Q ss_pred eeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e---CCeEEEEEcC--Cc--eee-ee-ccCCCCCCCeeEEEEcCCCCEE
Q 001318 928 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H---ETQLAIFETT--KL--ECV-KQ-WVPRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 928 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~---d~~v~vwd~~--~~--~~~-~~-~~~~~h~~~i~~l~~spdg~~l 997 (1101)
...... ...|..+..|+||..++.- . .++|.+--+. .+ ..+ .. .....-...+.++.|..++.+.
T Consensus 410 ~v~~~~-----~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la 484 (557)
T PRK13615 410 AVSWTA-----TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA 484 (557)
T ss_pred eccccC-----CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence 111111 1479999999999999883 2 2556653322 22 122 11 1111113489999999999986
Q ss_pred EEEE---cCCeEEEEEcC
Q 001318 998 YACF---LDATVCVFSAA 1012 (1101)
Q Consensus 998 ~s~s---~dg~v~vwd~~ 1012 (1101)
+.+. .+..+++..+.
T Consensus 485 Vl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 485 TLTLAPDGERQVELHQVG 502 (557)
T ss_pred EEeccCCCCceEEEEECC
Confidence 6552 33456666665
No 490
>PLN02193 nitrile-specifier protein
Probab=82.09 E-value=1.1e+02 Score=35.66 Aligned_cols=154 Identities=9% Similarity=0.060 Sum_probs=76.2
Q ss_pred CCcEEEEEecc-----CeEEEEEeecce--EeeeecC-cccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccc
Q 001318 858 DNNIIAIGMDD-----SSIQIYNVRVDE--VKSKLKG-HSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ 924 (1101)
Q Consensus 858 d~~~lasg~~d-----g~v~vwd~~~~~--~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~ 924 (1101)
++++++.|+.+ ..+.+||+.+.+ .+..+.. ...+-...+..-++++.+.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W- 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKW- 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEE-
Confidence 66788888765 358888887643 2222210 111111112223567777777653 366777766431
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC----CeEEEEEcCCceeeeeccCC--CCCCCeeEEEEcCCCCEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d----~~v~vwd~~~~~~~~~~~~~--~h~~~i~~l~~spdg~~l 997 (1101)
..+............ ..++ .-+++.++. +.+ ..+.+||+.+.+....-... .......++ ..-+++++
T Consensus 307 --~~~~~~~~~~~~R~~-~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iy 381 (470)
T PLN02193 307 --FHCSTPGDSFSIRGG-AGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIV 381 (470)
T ss_pred --EeCCCCCCCCCCCCC-cEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEE
Confidence 111111110000011 1222 235666665 333 46899999887654432110 001111222 23367777
Q ss_pred EEEEcC--------------CeEEEEEcCCceee
Q 001318 998 YACFLD--------------ATVCVFSAANLKLR 1017 (1101)
Q Consensus 998 ~s~s~d--------------g~v~vwd~~~~~~~ 1017 (1101)
+.|+.+ ..+.+||..+.+..
T Consensus 382 v~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 382 IFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777753 24888999887654
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.08 E-value=84 Score=34.38 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=36.9
Q ss_pred CCcEEEEEe------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC----eEEEEEcCCceee
Q 001318 950 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKLR 1017 (1101)
Q Consensus 950 dg~~la~~~------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----~v~vwd~~~~~~~ 1017 (1101)
+++..+.+. ...+..||+.+.+-...-.... .......+..-++++.+.|+.++ .+.+||..+.+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 455555532 2368889988765433211111 11222233344677777777654 2568888877653
No 492
>PLN02153 epithiospecifier protein
Probab=82.04 E-value=87 Score=34.57 Aligned_cols=154 Identities=11% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCcEEEEEecc-----CeEEEEEeecce--EeeeecC---cccCeeEEEEcCCCCEEEEEeCC-----------CceEEE
Q 001318 858 DNNIIAIGMDD-----SSIQIYNVRVDE--VKSKLKG---HSKRITGLAFSHALNVLVSSGAD-----------SQLCVW 916 (1101)
Q Consensus 858 d~~~lasg~~d-----g~v~vwd~~~~~--~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D-----------~~v~iw 916 (1101)
++++++.|+.+ ..+.+||..+.+ .+..+.. ........+..-++++.+.||.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56788888754 257888887643 2322211 11111222223356777777754 246778
Q ss_pred eCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-Ee-------------CCeEEEEEcCCceeeeeccCC-CC
Q 001318 917 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-------------ETQLAIFETTKLECVKQWVPR-ES 981 (1101)
Q Consensus 917 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~-------------d~~v~vwd~~~~~~~~~~~~~-~h 981 (1101)
|..+.+= ..+............ ..++ .-+++.++. +. ...+.+||..+.+-...-... ..
T Consensus 165 d~~~~~W---~~l~~~~~~~~~r~~-~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 165 NIADGKW---VQLPDPGENFEKRGG-AGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred ECCCCeE---eeCCCCCCCCCCCCc-ceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 8776432 111111100000011 1122 235555554 22 146889998877654332100 00
Q ss_pred -CCCeeEEEEcCCCCEEEEEEcC--------------CeEEEEEcCCceee
Q 001318 982 -SAPITHATFSCDSQLVYACFLD--------------ATVCVFSAANLKLR 1017 (1101)
Q Consensus 982 -~~~i~~l~~spdg~~l~s~s~d--------------g~v~vwd~~~~~~~ 1017 (1101)
.....++ ..-++++++.|+.. ..|..+|..+.+-.
T Consensus 240 ~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 240 SARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 1111222 23367777777742 25788888777644
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.79 E-value=90 Score=38.70 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec----CCCcccCCCCCCCCc-----cceEEEEeCCCCCEEEE
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSAYLPAGVSSSNV-----HPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~v-----~~~~i~~~~~d~~~l~s 1052 (1101)
.+.|.+++...-+.+++.+..||+|.++|-.+-+.+... ........-.+.+.- .++.++||| .+..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEE
Confidence 567888888888889999999999999998887666544 111100000001101 123588999 4677888
Q ss_pred EecCCcEE
Q 001318 1053 GLSDGGVH 1060 (1101)
Q Consensus 1053 ~~~dg~v~ 1060 (1101)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888855
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=81.64 E-value=40 Score=38.36 Aligned_cols=54 Identities=6% Similarity=-0.044 Sum_probs=37.9
Q ss_pred CCeEEEEcCCCcEEEEEe-CCeEEEEEcCCceee--eecc---CCCCCCCeeEEEEcCCC
Q 001318 941 SDTRVQFHQDQIHFLVVH-ETQLAIFETTKLECV--KQWV---PRESSAPITHATFSCDS 994 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~-d~~v~vwd~~~~~~~--~~~~---~~~h~~~i~~l~~spdg 994 (1101)
....++|.|||++|++-. .|+|++++..++... ..+. ..........|+|+||-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 458999999999988876 699999987654322 1111 11125678999999874
No 495
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.29 E-value=1.6e+02 Score=38.79 Aligned_cols=382 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC
Q 001318 449 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 528 (1101)
Q Consensus 449 ~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~ 528 (1101)
+.|-..++.|.-+++|.++.+ .|+.++.||...+.-.-.-......+..+.. ..||++.+ =+.+..+.+=+-.
T Consensus 359 kaH~A~LTgv~~~~~ge~lRl----Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~--qgdG~lYA-k~~~~l~nLSs~~ 431 (1774)
T PF11725_consen 359 KAHIAHLTGVHTDPDGEQLRL----HDDRLYQFDPNTARWKPPPDKSDTPFSSLSR--QGDGKLYA-KDDDTLVNLSSGQ 431 (1774)
T ss_pred HHHHHHhhccccCCCCCeEEe----ecCceeeeccccceecCCCCcccchhhhhcc--cCCCceEe-cCCCceeecCCCC
Q ss_pred CCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE-EEEEeCCCcEEEEECCCC------ceeEEEcC
Q 001318 529 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR-FLAAGDDFSIKFWDMDSV------QLLTSIDA 601 (1101)
Q Consensus 529 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~------~~~~~~~~ 601 (1101)
....... .+....+.+++.. ++++-....+.+|++... +....+..
T Consensus 432 ~~~~~v~---------------------------~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L 484 (1774)
T PF11725_consen 432 MSEAEVD---------------------------KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQL 484 (1774)
T ss_pred cchhhhh---------------------------hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeec
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1101)
.++.....+|.++++ .|++...+|.++.=++.....---.+........+......
T Consensus 485 ~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~---------------------- 540 (1774)
T PF11725_consen 485 ADGKAQAQSVGLSND--RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSAL---------------------- 540 (1774)
T ss_pred cCCchhhhheeecCC--eEEEEeCCCCEEecccccccCCCcceEeccccccccccccc----------------------
Q ss_pred cccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCce
Q 001318 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 761 (1101)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 761 (1101)
.+...++|...+ ..+.+.++.=+..|....+.-.+..
T Consensus 541 ------------------G~~~~VtGF~~g-------------------------d~G~lhAlikd~~GQ~Hs~aLde~~ 577 (1774)
T PF11725_consen 541 ------------------GGDHKVTGFISG-------------------------DDGQLHALIKDRQGQRHSHALDEQG 577 (1774)
T ss_pred ------------------cccceeeccccC-------------------------CCCeeeEEEeccCCceeeccccccC
Q ss_pred EEe---eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEE-----
Q 001318 762 HLL---WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN----- 832 (1101)
Q Consensus 762 i~i---w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd----- 832 (1101)
-.+ |++ +..++..--.+.........-..-.-++.=.+|- +|.|.-||
T Consensus 578 ~~~~pGWNL-----------------------Sd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~ 634 (1774)
T PF11725_consen 578 SQLQPGWNL-----------------------SDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQC 634 (1774)
T ss_pred CccCCCCcc-----------------------cceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcchh
Q ss_pred -----------CCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCC
Q 001318 833 -----------MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 901 (1101)
Q Consensus 833 -----------~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg 901 (1101)
++.|---..+--..+.|..+.+++ ...-++-|...-.-.----.+-+.-..+.|-.+.+..-.---++
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~ 713 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGDNNVFALPQRRNKVELGDALEGLEDRVITAFAVVND 713 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCCCcccccccccCCCCCCccccCCCcCcceeEEEEcC
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEE
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA 963 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~ 963 (1101)
+.+++....|.+.... ..+. .......... +.|..+++.....+.|...+|.++
T Consensus 714 ~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~--G~ik~l~lD~~~nL~Alt~~G~Lf 767 (1774)
T PF11725_consen 714 NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLS--GEIKDLALDEKQNLYALTSTGELF 767 (1774)
T ss_pred CceEEeccCCcccccc-CCCC-----CccCCCCCCC--cchhheeeccccceeEecCCCcee
No 496
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=81.17 E-value=1.3e+02 Score=36.06 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcchhHHHHHHHH-------HhHhcCccccHHHHHHHhhcCChHHHHHHhcc
Q 001318 2 SSLSRELVFLILQ-------LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSG 46 (1101)
Q Consensus 2 ~~~~~e~vrli~q-------l~~esg~~~~~~~~~~~i~~g~w~~~~~~l~~ 46 (1101)
|--|++++|-++| =.+|||.. .|+.+|.-|+-|-|--+|..
T Consensus 61 S~~k~~~l~wLlqhGidv~vqD~ESG~t----aLHRaiyyG~idca~lLL~~ 108 (1267)
T KOG0783|consen 61 SENKNSFLRWLLQHGIDVFVQDEESGYT----ALHRAIYYGNIDCASLLLSK 108 (1267)
T ss_pred ccchhHHHHHHHhcCceeeeccccccch----HhhHhhhhchHHHHHHHHhc
Confidence 3458899999999 67788874 89999999999988887764
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.46 E-value=8 Score=37.69 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCeeEEEEcCCC------CEEEEEeCCCceEEEeCCC
Q 001318 890 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 890 ~~V~~l~~s~dg------~~l~s~s~D~~v~iwd~~~ 920 (1101)
..|.+++|||-| .+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999854 4788999999999998764
No 498
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=47 Score=42.23 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCccee
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL 381 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~ 381 (1101)
-......++|+|... ++|.|+..|.|.++-...-+..
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 345677899999998 6999999999999987654443
No 499
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.27 E-value=0.37 Score=52.40 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=87.7
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
++...+.-.+..-.++|.-+|..+++.+...+.+.+||+.+...-. +-.+-+..-.-+.|+
T Consensus 66 q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~ws 126 (615)
T KOG2247|consen 66 QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLAWS 126 (615)
T ss_pred ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHhhc
Confidence 3333444566777888888888777788888999999997643211 111112222238899
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+.+..++.+-..|.+.|++..+.+.+. ....|...+++++|.+.+. .+.++.|..+.+-.
T Consensus 127 Kg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 127 KGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred cCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999999999998866544 3444999999999999885 77888887765544
No 500
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.76 E-value=27 Score=38.90 Aligned_cols=145 Identities=8% Similarity=0.074 Sum_probs=83.8
Q ss_pred CCcEEE-EEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCC--------CEEEEEeCCCceEEEeCCCccccccee
Q 001318 858 DNNIIA-IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL--------NVLVSSGADSQLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 858 d~~~la-sg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg--------~~l~s~s~D~~v~iwd~~~~~~~~~~~ 928 (1101)
|..+|. .|..-..++--|++-|+.+..+.-|..- -|.|.|+. +.|+-.| +..|.-.|.+-.. .+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g-NKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG-NKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccC-Cceee
Confidence 444444 4555567888899999999999988775 46777753 3455444 4444433432211 00011
Q ss_pred eecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 929 LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 929 ~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
.+...- .......+..-. ...++|+ +..|.|++||.-.-+....+. +-...|..+..+.+|+++++.+. .++.
T Consensus 554 ~esKdY--~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 554 VESKDY--KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred eeehhc--cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEeec-ceEE
Confidence 111100 000112222222 3446666 678899999976444333332 45778999999999999876664 4677
Q ss_pred EEEcC
Q 001318 1008 VFSAA 1012 (1101)
Q Consensus 1008 vwd~~ 1012 (1101)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77753
Done!