Query 001318
Match_columns 1101
No_of_seqs 893 out of 4758
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 2.3E-67 7.8E-72 636.4 73.9 566 339-1063 10-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.3E-65 4.4E-70 621.1 68.6 577 344-1065 17-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 3.5E-63 1.2E-67 599.8 68.7 565 291-1010 6-577 (577)
4 1nr0_A Actin interacting prote 100.0 3.9E-62 1.3E-66 590.7 69.5 568 311-1012 22-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-61 8.3E-66 637.5 65.0 600 340-1065 610-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.5E-58 5.1E-63 564.3 63.0 562 343-1066 16-614 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 4E-57 1.4E-61 565.3 59.6 613 339-1068 11-785 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-57 1.9E-61 596.0 64.1 568 402-1069 610-1210(1249)
9 1pgu_A Actin interacting prote 100.0 8.7E-56 3E-60 539.9 64.6 548 311-1013 22-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-53 9.8E-58 530.5 62.1 634 299-1056 15-819 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-46 1.9E-50 469.0 58.5 466 341-1010 9-502 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3.5E-44 1.2E-48 452.5 51.4 467 402-1063 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 7.9E-40 2.7E-44 374.7 39.9 306 341-767 104-409 (410)
14 1vyh_C Platelet-activating fac 100.0 2E-39 6.7E-44 371.4 37.6 306 447-918 103-409 (410)
15 1got_B GT-beta; complex (GTP-b 100.0 1E-38 3.6E-43 355.8 42.1 290 340-766 50-340 (340)
16 3ow8_A WD repeat-containing pr 100.0 1.3E-38 4.5E-43 351.0 41.0 287 447-919 27-320 (321)
17 2pbi_B Guanine nucleotide-bind 100.0 1.2E-38 4.1E-43 356.9 40.9 293 340-766 59-354 (354)
18 1r5m_A SIR4-interacting protei 100.0 1.4E-38 4.8E-43 368.2 42.2 340 403-919 41-424 (425)
19 3ow8_A WD repeat-containing pr 100.0 2.2E-38 7.4E-43 349.2 41.4 287 403-876 28-319 (321)
20 1got_B GT-beta; complex (GTP-b 100.0 7.3E-38 2.5E-42 349.0 41.0 287 444-917 47-340 (340)
21 3frx_A Guanine nucleotide-bind 100.0 1.3E-37 4.4E-42 343.4 41.0 300 341-768 13-316 (319)
22 4g56_B MGC81050 protein; prote 100.0 1.2E-38 3.9E-43 357.3 32.7 322 349-879 9-344 (357)
23 4g56_B MGC81050 protein; prote 100.0 3.1E-38 1.1E-42 353.8 35.5 319 703-1068 18-345 (357)
24 4gqb_B Methylosome protein 50; 100.0 3.7E-38 1.3E-42 349.7 35.4 295 737-1068 29-333 (344)
25 2ynn_A Coatomer subunit beta'; 100.0 2.5E-37 8.4E-42 338.7 40.8 250 341-637 9-260 (304)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-37 7.3E-42 345.8 39.9 208 402-636 10-225 (345)
27 2pm9_A Protein WEB1, protein t 100.0 5.5E-39 1.9E-43 370.5 27.8 332 408-920 13-414 (416)
28 3frx_A Guanine nucleotide-bind 100.0 7.2E-37 2.5E-41 337.4 43.3 214 402-637 12-228 (319)
29 2ynn_A Coatomer subunit beta'; 100.0 4.2E-37 1.4E-41 336.9 40.3 289 446-920 7-302 (304)
30 3iz6_a 40S ribosomal protein R 100.0 3.9E-38 1.3E-42 357.1 33.1 306 431-921 48-376 (380)
31 3iz6_a 40S ribosomal protein R 100.0 7.3E-38 2.5E-42 354.8 35.3 300 339-768 60-374 (380)
32 1r5m_A SIR4-interacting protei 100.0 3.6E-37 1.2E-41 356.4 41.4 359 339-877 39-424 (425)
33 4gqb_B Methylosome protein 50; 100.0 9.1E-38 3.1E-42 346.6 34.2 293 403-880 26-333 (344)
34 2pbi_B Guanine nucleotide-bind 100.0 1.1E-36 3.7E-41 341.1 41.5 289 402-875 59-354 (354)
35 2xzm_R RACK1; ribosome, transl 100.0 1.7E-36 5.9E-41 338.5 41.2 216 402-636 16-244 (343)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-36 3.7E-41 340.1 36.6 301 736-1069 13-338 (345)
37 1gxr_A ESG1, transducin-like e 100.0 2.9E-36 1E-40 336.6 39.5 324 344-877 8-336 (337)
38 4ery_A WD repeat-containing pr 100.0 1.4E-35 4.8E-40 326.8 43.9 252 339-637 17-269 (312)
39 2pm9_A Protein WEB1, protein t 100.0 4.1E-38 1.4E-42 363.2 24.1 367 343-879 10-415 (416)
40 3vl1_A 26S proteasome regulato 100.0 5.5E-37 1.9E-41 354.2 33.2 353 346-768 57-418 (420)
41 1k32_A Tricorn protease; prote 100.0 5.6E-35 1.9E-39 375.5 54.9 526 344-1068 13-639 (1045)
42 1erj_A Transcriptional repress 100.0 8.9E-36 3.1E-40 339.3 41.5 303 405-920 62-389 (393)
43 4ery_A WD repeat-containing pr 100.0 2.3E-35 7.8E-40 325.1 41.8 291 445-919 16-311 (312)
44 1gxr_A ESG1, transducin-like e 100.0 7.4E-36 2.5E-40 333.4 35.8 320 406-918 8-335 (337)
45 3vl1_A 26S proteasome regulato 100.0 6.4E-36 2.2E-40 345.2 36.2 346 408-920 57-419 (420)
46 1erj_A Transcriptional repress 100.0 2.7E-35 9.3E-40 335.3 40.0 275 337-637 56-342 (393)
47 3v7d_B Cell division control p 100.0 1.2E-34 4E-39 339.4 44.1 341 402-917 116-460 (464)
48 2xzm_R RACK1; ribosome, transl 100.0 4.7E-35 1.6E-39 326.9 38.7 291 444-921 13-341 (343)
49 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-36 4.7E-41 353.9 27.1 357 406-1013 132-517 (524)
50 2hes_X YDR267CP; beta-propelle 100.0 6E-35 2E-39 323.8 38.7 253 340-637 9-281 (330)
51 1k32_A Tricorn protease; prote 100.0 4.8E-34 1.6E-38 366.9 52.5 494 335-1015 42-639 (1045)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-34 6.4E-39 335.2 44.2 317 402-920 113-442 (445)
53 2hes_X YDR267CP; beta-propelle 100.0 5E-35 1.7E-39 324.4 37.5 292 735-1066 11-328 (330)
54 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-36 1.3E-40 350.1 29.9 361 335-877 123-516 (524)
55 3gre_A Serine/threonine-protei 100.0 3.5E-36 1.2E-40 349.3 28.9 348 403-917 59-437 (437)
56 4aow_A Guanine nucleotide-bind 100.0 2.7E-34 9.4E-39 321.1 42.6 211 402-637 33-247 (340)
57 4aow_A Guanine nucleotide-bind 100.0 2.3E-34 7.8E-39 321.8 40.8 307 338-770 30-338 (340)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-34 2.5E-38 330.3 45.4 320 340-878 113-442 (445)
59 3gre_A Serine/threonine-protei 100.0 6.7E-36 2.3E-40 346.9 25.1 386 414-1010 34-437 (437)
60 3v7d_B Cell division control p 100.0 1.8E-33 6.2E-38 329.3 45.5 320 339-876 115-461 (464)
61 3zwl_B Eukaryotic translation 100.0 7.7E-34 2.6E-38 321.4 39.8 302 402-922 27-348 (369)
62 3dm0_A Maltose-binding peripla 100.0 6.1E-34 2.1E-38 350.3 38.8 259 341-644 378-639 (694)
63 3k26_A Polycomb protein EED; W 100.0 8.4E-35 2.9E-39 329.0 26.8 318 402-920 13-366 (366)
64 4a11_B DNA excision repair pro 100.0 1.1E-33 3.8E-38 325.1 36.3 356 367-920 22-405 (408)
65 3dm0_A Maltose-binding peripla 100.0 4.3E-33 1.5E-37 342.8 41.0 211 402-637 377-593 (694)
66 1sq9_A Antiviral protein SKI8; 100.0 4.2E-33 1.4E-37 319.0 37.3 301 444-921 8-396 (397)
67 4a11_B DNA excision repair pro 100.0 2.2E-33 7.4E-38 322.7 34.3 362 581-1066 21-405 (408)
68 3ei3_B DNA damage-binding prot 100.0 3.6E-33 1.2E-37 317.7 35.5 302 402-878 68-382 (383)
69 4e54_B DNA damage-binding prot 100.0 6.1E-34 2.1E-38 329.2 27.4 311 403-882 115-434 (435)
70 3zwl_B Eukaryotic translation 100.0 3.7E-32 1.3E-36 307.6 41.5 306 336-770 23-347 (369)
71 3ei3_B DNA damage-binding prot 100.0 4.8E-33 1.6E-37 316.6 33.8 308 587-1013 57-382 (383)
72 2pm7_B Protein transport prote 100.0 8.8E-33 3E-37 301.3 34.2 255 341-636 5-285 (297)
73 3i2n_A WD repeat-containing pr 100.0 1.1E-32 3.7E-37 310.5 35.8 299 447-921 13-354 (357)
74 3i2n_A WD repeat-containing pr 100.0 2E-32 6.9E-37 308.3 36.5 322 402-881 13-356 (357)
75 3k26_A Polycomb protein EED; W 100.0 1.4E-32 4.9E-37 310.6 35.3 264 343-637 16-319 (366)
76 4e54_B DNA damage-binding prot 100.0 6.2E-33 2.1E-37 320.8 32.4 294 563-1017 121-434 (435)
77 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-34 1.7E-38 320.5 22.3 326 450-1001 13-349 (588)
78 1k8k_C P40, ARP2/3 complex 41 100.0 2.8E-32 9.6E-37 309.1 37.1 244 344-636 7-274 (372)
79 1k8k_C P40, ARP2/3 complex 41 100.0 2E-32 6.9E-37 310.2 35.7 323 403-880 4-363 (372)
80 4h5i_A Guanine nucleotide-exch 100.0 6.1E-33 2.1E-37 311.6 30.1 294 452-921 14-344 (365)
81 4h5i_A Guanine nucleotide-exch 100.0 1.5E-32 5.2E-37 308.4 31.6 203 804-1014 132-344 (365)
82 3dwl_C Actin-related protein 2 100.0 1.6E-33 5.5E-38 319.9 23.8 257 344-635 10-280 (377)
83 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-31 3.8E-36 296.0 37.6 245 338-637 11-256 (313)
84 1sq9_A Antiviral protein SKI8; 100.0 2.6E-32 9E-37 312.3 33.8 259 341-645 12-330 (397)
85 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4E-36 306.7 38.6 293 337-769 83-380 (401)
86 2j04_A TAU60, YPL007P, hypothe 100.0 9.5E-34 3.3E-38 318.1 20.2 222 344-637 14-255 (588)
87 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-31 1E-35 292.6 39.0 285 444-923 10-299 (313)
88 4gga_A P55CDC, cell division c 100.0 4.7E-31 1.6E-35 303.6 41.5 239 347-637 107-354 (420)
89 3dwl_C Actin-related protein 2 100.0 1.2E-32 4.1E-37 312.6 26.6 245 737-1012 10-280 (377)
90 4gga_A P55CDC, cell division c 100.0 4.9E-31 1.7E-35 303.5 39.4 298 409-898 107-415 (420)
91 4ggc_A P55CDC, cell division c 100.0 8.7E-31 3E-35 289.5 39.6 283 409-920 27-315 (318)
92 4aez_A CDC20, WD repeat-contai 100.0 4.5E-31 1.6E-35 301.8 36.6 291 404-885 88-387 (401)
93 2pm7_B Protein transport prote 100.0 4.6E-31 1.6E-35 287.8 34.6 252 803-1072 7-290 (297)
94 3dw8_B Serine/threonine-protei 100.0 8.8E-31 3E-35 305.0 36.0 269 342-637 25-374 (447)
95 3bg1_A Protein SEC13 homolog; 100.0 7.3E-32 2.5E-36 296.8 24.4 255 342-636 10-293 (316)
96 3bg1_A Protein SEC13 homolog; 100.0 2.3E-31 7.9E-36 292.9 28.1 226 402-637 8-248 (316)
97 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-30 8E-35 290.2 35.2 226 402-637 6-250 (351)
98 3mmy_A MRNA export factor; mRN 100.0 3.1E-30 1.1E-34 291.6 35.2 303 402-920 34-346 (368)
99 1yfq_A Cell cycle arrest prote 100.0 3.7E-30 1.3E-34 287.7 35.3 294 402-875 6-321 (342)
100 4ggc_A P55CDC, cell division c 100.0 2.2E-29 7.4E-34 278.3 38.2 282 741-1068 28-317 (318)
101 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-29 4E-34 293.6 36.8 233 343-637 131-366 (435)
102 3dw8_B Serine/threonine-protei 100.0 1E-29 3.6E-34 295.9 35.6 304 737-1064 27-444 (447)
103 1p22_A F-BOX/WD-repeat protein 100.0 9.8E-30 3.4E-34 294.2 35.2 275 448-922 129-416 (435)
104 1yfq_A Cell cycle arrest prote 100.0 3.8E-30 1.3E-34 287.7 30.6 245 343-637 9-283 (342)
105 3mmy_A MRNA export factor; mRN 100.0 7.5E-30 2.6E-34 288.4 33.4 250 341-637 35-305 (368)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-30 1.5E-34 294.0 30.8 254 346-638 35-301 (402)
107 3jrp_A Fusion protein of prote 100.0 1.2E-29 4.2E-34 288.1 32.6 256 341-637 7-288 (379)
108 3f3f_A Nucleoporin SEH1; struc 100.0 1E-28 3.6E-33 276.7 35.6 255 803-1068 9-339 (351)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-29 1.4E-33 286.0 31.2 287 742-1068 38-344 (402)
110 3jrp_A Fusion protein of prote 100.0 7.9E-29 2.7E-33 281.4 31.9 252 804-1068 10-289 (379)
111 3bws_A Protein LP49; two-domai 100.0 1.2E-27 4.1E-32 277.1 40.0 320 409-920 62-432 (433)
112 2xyi_A Probable histone-bindin 100.0 9.8E-29 3.3E-33 284.9 30.0 267 338-637 121-411 (430)
113 1l0q_A Surface layer protein; 100.0 3E-27 1E-31 269.5 40.4 227 358-637 2-234 (391)
114 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5.2E-32 251.2 34.4 294 454-918 41-355 (356)
115 3jro_A Fusion protein of prote 100.0 6.5E-29 2.2E-33 306.7 27.6 256 341-637 5-286 (753)
116 3vu4_A KMHSV2; beta-propeller 100.0 4.5E-28 1.5E-32 271.1 31.6 294 403-922 15-338 (355)
117 1l0q_A Surface layer protein; 100.0 5.6E-27 1.9E-31 267.3 39.2 329 420-956 3-364 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-27 4.6E-32 277.5 34.1 258 345-634 4-337 (450)
119 4gq1_A NUP37; propeller, trans 100.0 1.5E-28 5.3E-33 279.2 24.5 267 343-634 87-387 (393)
120 2w18_A PALB2, fancn, partner a 100.0 8.2E-28 2.8E-32 253.3 27.9 274 704-1064 56-355 (356)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-27 9E-32 275.0 34.8 247 804-1072 101-397 (450)
122 4gq1_A NUP37; propeller, trans 100.0 4E-28 1.4E-32 275.7 27.2 348 345-877 15-388 (393)
123 3bws_A Protein LP49; two-domai 100.0 1.1E-26 3.7E-31 269.1 39.8 237 804-1066 168-432 (433)
124 3vu4_A KMHSV2; beta-propeller 100.0 8.3E-27 2.8E-31 260.9 34.9 295 563-1015 21-338 (355)
125 3lrv_A PRE-mRNA-splicing facto 100.0 9E-28 3.1E-32 268.0 26.8 198 804-1014 124-334 (343)
126 3jro_A Fusion protein of prote 100.0 1.3E-27 4.5E-32 295.1 30.7 251 803-1068 7-287 (753)
127 3lrv_A PRE-mRNA-splicing facto 100.0 5.1E-27 1.7E-31 261.8 28.6 280 459-920 43-333 (343)
128 2xyi_A Probable histone-bindin 100.0 1.4E-26 4.8E-31 266.9 32.9 212 402-637 123-354 (430)
129 1nir_A Nitrite reductase; hemo 100.0 5.7E-26 1.9E-30 267.1 37.1 332 460-977 145-522 (543)
130 1nir_A Nitrite reductase; hemo 100.0 1.1E-25 3.7E-30 264.7 37.3 333 414-923 144-517 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.2E-24 2.5E-28 241.9 28.3 302 452-901 62-409 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 5.6E-23 1.9E-27 255.5 37.1 258 345-635 36-366 (741)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-23 4.8E-28 239.5 28.3 242 345-637 62-345 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-23 3.7E-28 261.2 27.9 235 346-637 17-290 (723)
135 2ecf_A Dipeptidyl peptidase IV 99.9 5E-23 1.7E-27 255.9 33.4 345 407-921 36-460 (741)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3E-22 1E-26 248.2 29.2 378 408-973 17-447 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-21 3.6E-26 242.4 33.2 248 348-635 28-341 (706)
138 1ri6_A Putative isomerase YBHE 99.9 2.4E-21 8.1E-26 216.2 32.5 299 703-1045 7-333 (343)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-21 5.9E-26 240.5 34.4 284 738-1068 81-437 (706)
140 3u4y_A Uncharacterized protein 99.9 2.8E-20 9.7E-25 206.3 34.9 239 351-637 3-253 (331)
141 1ri6_A Putative isomerase YBHE 99.9 1.2E-20 4.3E-25 210.3 32.2 245 804-1068 36-310 (343)
142 3u4y_A Uncharacterized protein 99.9 1.6E-20 5.5E-25 208.2 31.7 286 744-1068 3-306 (331)
143 3vgz_A Uncharacterized protein 99.9 6.9E-20 2.4E-24 205.2 34.3 273 738-1057 40-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 2.2E-20 7.6E-25 207.7 29.8 181 825-1021 114-318 (337)
145 1pby_B Quinohemoprotein amine 99.9 1.9E-20 6.5E-25 208.2 27.7 267 751-1069 2-313 (337)
146 3vgz_A Uncharacterized protein 99.9 1.2E-19 4E-24 203.3 34.1 249 343-637 38-304 (353)
147 3hfq_A Uncharacterized protein 99.9 1.2E-19 4.2E-24 202.6 30.3 245 804-1065 38-316 (347)
148 1z68_A Fibroblast activation p 99.8 6.4E-20 2.2E-24 226.8 27.4 334 567-1021 21-451 (719)
149 2ojh_A Uncharacterized protein 99.8 6.4E-20 2.2E-24 199.6 24.0 233 804-1057 40-293 (297)
150 1z68_A Fibroblast activation p 99.8 2.4E-19 8.3E-24 221.6 29.7 287 740-1068 61-445 (719)
151 3hfq_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 195.8 31.1 278 709-1017 14-323 (347)
152 2ojh_A Uncharacterized protein 99.8 2.3E-19 8E-24 195.1 26.0 243 335-627 31-293 (297)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-18 6.8E-23 197.3 33.6 314 739-1066 37-405 (434)
154 4a5s_A Dipeptidyl peptidase 4 99.8 4.1E-18 1.4E-22 210.3 37.2 233 346-637 17-295 (740)
155 1jmx_B Amine dehydrogenase; ox 99.8 8.3E-19 2.8E-23 196.0 26.7 237 810-1069 4-328 (349)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-18 9.8E-23 196.0 31.6 266 345-635 36-332 (434)
157 3o4h_A Acylamino-acid-releasin 99.8 8.2E-19 2.8E-23 210.8 27.4 228 739-1013 65-315 (582)
158 3o4h_A Acylamino-acid-releasin 99.8 1.1E-18 3.7E-23 209.8 26.5 271 451-920 20-315 (582)
159 4a5s_A Dipeptidyl peptidase 4 99.8 4.2E-17 1.4E-21 201.3 40.5 334 566-1021 21-457 (740)
160 3scy_A Hypothetical bacterial 99.8 2.1E-17 7.2E-22 185.5 34.4 276 708-1019 24-345 (361)
161 3scy_A Hypothetical bacterial 99.8 1.3E-16 4.5E-21 178.9 40.5 230 740-991 101-360 (361)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.6E-18 2.3E-22 189.5 28.7 250 806-1067 40-342 (365)
163 1jmx_B Amine dehydrogenase; ox 99.8 1.9E-17 6.4E-22 185.0 27.1 260 350-644 4-332 (349)
164 2oiz_A Aromatic amine dehydrog 99.8 2.1E-16 7.1E-21 176.1 31.8 221 807-1048 109-360 (361)
165 3pe7_A Oligogalacturonate lyas 99.8 1.3E-16 4.4E-21 181.2 28.9 175 403-626 26-209 (388)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.9E-21 179.4 26.9 250 739-1014 40-342 (365)
167 3pe7_A Oligogalacturonate lyas 99.8 1.8E-16 6.1E-21 180.0 28.5 252 338-637 23-330 (388)
168 2oiz_A Aromatic amine dehydrog 99.7 4E-15 1.4E-19 165.7 30.5 304 474-902 29-360 (361)
169 3fvz_A Peptidyl-glycine alpha- 99.7 3.2E-15 1.1E-19 164.7 27.1 252 805-1067 23-323 (329)
170 1qks_A Cytochrome CD1 nitrite 99.7 8.2E-14 2.8E-18 162.7 39.9 332 574-1021 168-546 (567)
171 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-14 6.1E-19 155.5 31.7 243 804-1067 28-281 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.7 1.2E-14 4.1E-19 160.0 30.3 253 345-636 23-322 (329)
173 3c5m_A Oligogalacturonate lyas 99.7 2E-15 6.9E-20 171.8 23.7 297 409-880 37-386 (396)
174 1qks_A Cytochrome CD1 nitrite 99.7 2.3E-13 7.8E-18 158.9 41.2 328 467-977 168-546 (567)
175 3azo_A Aminopeptidase; POP fam 99.7 1.5E-14 5E-19 176.9 29.7 244 341-635 19-322 (662)
176 3c5m_A Oligogalacturonate lyas 99.7 2.7E-15 9.2E-20 170.7 21.6 239 347-637 37-330 (396)
177 3azo_A Aminopeptidase; POP fam 99.7 1.1E-14 3.7E-19 178.1 28.3 333 448-918 19-409 (662)
178 4a2l_A BT_4663, two-component 99.7 2E-10 7E-15 142.7 66.5 553 345-1066 87-659 (795)
179 1q7f_A NHL, brain tumor CG1071 99.6 1.5E-13 5E-18 148.3 32.4 250 343-637 27-281 (286)
180 4a2l_A BT_4663, two-component 99.6 4E-10 1.4E-14 140.1 64.6 546 345-1068 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 1.2E-13 4.1E-18 153.8 27.9 220 807-1065 60-330 (347)
182 3e5z_A Putative gluconolactona 99.6 8.4E-13 2.9E-17 143.0 31.6 242 341-637 23-287 (296)
183 2dg1_A DRP35, lactonase; beta 99.6 4.3E-13 1.5E-17 148.3 29.2 274 739-1057 6-301 (333)
184 3sjl_D Methylamine dehydrogena 99.6 1E-12 3.5E-17 143.0 29.9 204 808-1021 139-371 (386)
185 2gop_A Trilobed protease; beta 99.6 3.6E-13 1.2E-17 149.9 26.7 222 346-637 15-292 (347)
186 3dsm_A Uncharacterized protein 99.6 6.6E-13 2.3E-17 145.8 28.0 239 806-1069 44-304 (328)
187 3no2_A Uncharacterized protein 99.6 4.1E-13 1.4E-17 142.6 25.1 253 816-1084 4-270 (276)
188 2z2n_A Virginiamycin B lyase; 99.6 1.1E-11 3.7E-16 134.5 36.4 280 737-1068 13-297 (299)
189 2mad_H Methylamine dehydrogena 99.6 1.4E-11 4.6E-16 136.9 37.3 204 808-1020 127-357 (373)
190 2xdw_A Prolyl endopeptidase; a 99.5 5.5E-13 1.9E-17 163.7 28.4 249 344-638 123-416 (710)
191 2xdw_A Prolyl endopeptidase; a 99.5 2.9E-12 1E-16 157.2 34.8 245 737-1015 123-416 (710)
192 3dsm_A Uncharacterized protein 99.5 1.3E-12 4.4E-17 143.4 27.6 273 709-1021 15-309 (328)
193 3e5z_A Putative gluconolactona 99.5 1.5E-12 5.2E-17 141.0 27.4 234 804-1066 26-286 (296)
194 2dg1_A DRP35, lactonase; beta 99.5 3.3E-12 1.1E-16 141.1 30.2 268 695-1004 11-301 (333)
195 3v9f_A Two-component system se 99.5 2.5E-08 8.7E-13 123.5 67.9 609 345-1066 18-656 (781)
196 2bkl_A Prolyl endopeptidase; m 99.5 2.5E-13 8.6E-18 166.1 22.1 240 804-1068 119-399 (695)
197 3sjl_D Methylamine dehydrogena 99.5 2.1E-12 7.1E-17 140.6 26.4 277 745-1068 39-365 (386)
198 2z2n_A Virginiamycin B lyase; 99.5 3.5E-11 1.2E-15 130.4 36.1 237 739-1015 57-297 (299)
199 1rwi_B Serine/threonine-protei 99.5 2.3E-12 7.8E-17 137.5 25.5 239 807-1068 25-266 (270)
200 1rwi_B Serine/threonine-protei 99.5 6.1E-12 2.1E-16 134.1 27.5 239 347-637 25-265 (270)
201 2mad_H Methylamine dehydrogena 99.5 3.8E-11 1.3E-15 133.3 34.2 237 810-1068 70-352 (373)
202 2bkl_A Prolyl endopeptidase; m 99.5 1.7E-12 6E-17 158.7 25.6 284 698-1016 76-400 (695)
203 3v9f_A Two-component system se 99.5 2.4E-08 8.1E-13 123.8 60.7 510 346-1012 115-655 (781)
204 3no2_A Uncharacterized protein 99.5 1.1E-11 3.7E-16 131.6 25.8 233 360-645 7-260 (276)
205 3c75_H MADH, methylamine dehyd 99.4 2E-11 6.9E-16 135.6 27.5 206 808-1020 179-409 (426)
206 1yr2_A Prolyl oligopeptidase; 99.4 1.3E-11 4.4E-16 152.0 25.4 241 806-1068 163-443 (741)
207 1yr2_A Prolyl oligopeptidase; 99.4 2E-11 7E-16 150.3 26.5 282 698-1016 115-444 (741)
208 2qc5_A Streptogramin B lactona 99.4 5.4E-10 1.8E-14 121.0 34.9 278 737-1065 18-299 (300)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.4E-10 1.2E-14 123.6 30.3 257 343-637 15-300 (314)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.2E-10 4E-15 127.3 26.3 245 739-1013 18-299 (314)
211 2qc5_A Streptogramin B lactona 99.3 2.9E-09 1E-13 115.2 36.5 240 344-634 18-258 (300)
212 3c75_H MADH, methylamine dehyd 99.3 1E-10 3.4E-15 130.0 24.9 239 810-1068 122-404 (426)
213 3hrp_A Uncharacterized protein 99.3 4.7E-10 1.6E-14 126.4 28.2 250 806-1064 131-408 (409)
214 3dr2_A Exported gluconolactona 99.3 4.9E-10 1.7E-14 121.5 27.4 237 340-628 39-299 (305)
215 2qe8_A Uncharacterized protein 99.3 6.7E-11 2.3E-15 130.7 20.8 273 739-1062 17-317 (343)
216 3g4e_A Regucalcin; six bladed 99.3 6.7E-10 2.3E-14 119.9 26.6 228 740-1002 14-261 (297)
217 3hrp_A Uncharacterized protein 99.3 2E-09 6.7E-14 121.4 30.1 255 346-634 131-408 (409)
218 1xip_A Nucleoporin NUP159; bet 99.3 1.2E-10 4E-15 127.6 18.7 172 807-999 39-230 (388)
219 3g4e_A Regucalcin; six bladed 99.2 1.8E-09 6.3E-14 116.4 27.2 235 345-625 12-261 (297)
220 1mda_H Methylamine dehydrogena 99.2 1.8E-10 6.3E-15 125.9 18.7 273 703-1021 34-354 (368)
221 4a0p_A LRP6, LRP-6, low-densit 99.2 1.3E-05 4.5E-10 94.7 61.6 532 359-1020 8-556 (628)
222 1kb0_A Quinohemoprotein alcoho 99.2 2.6E-09 8.8E-14 128.5 29.8 202 850-1066 246-567 (677)
223 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.6E-14 121.0 23.0 250 346-628 17-313 (343)
224 2ghs_A AGR_C_1268P; regucalcin 99.2 6E-09 2E-13 114.0 28.8 225 741-1003 51-292 (326)
225 3iuj_A Prolyl endopeptidase; h 99.2 1.4E-09 4.8E-14 132.4 25.4 245 344-637 127-406 (693)
226 2ghs_A AGR_C_1268P; regucalcin 99.2 9.2E-09 3.1E-13 112.5 29.3 228 347-626 50-292 (326)
227 1xip_A Nucleoporin NUP159; bet 99.2 3.7E-10 1.3E-14 123.6 17.8 187 739-956 38-230 (388)
228 1kb0_A Quinohemoprotein alcoho 99.2 2.9E-09 1E-13 128.1 27.0 80 826-907 457-537 (677)
229 1yiq_A Quinohemoprotein alcoho 99.2 2.9E-09 1E-13 128.3 27.1 190 851-1054 239-537 (689)
230 1yiq_A Quinohemoprotein alcoho 99.2 6.3E-09 2.1E-13 125.5 29.5 78 826-905 455-533 (689)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.5E-08 1.2E-12 110.6 33.2 158 418-601 52-216 (376)
232 3iuj_A Prolyl endopeptidase; h 99.1 4.5E-09 1.5E-13 128.0 27.4 242 737-1017 127-409 (693)
233 3dr2_A Exported gluconolactona 99.1 5E-09 1.7E-13 113.5 24.7 228 739-1007 45-301 (305)
234 2ece_A 462AA long hypothetical 99.1 2.7E-08 9.1E-13 108.5 29.6 230 815-1054 93-399 (462)
235 3s94_A LRP-6, low-density lipo 99.1 2.7E-05 9.1E-10 92.0 57.3 525 366-1015 16-553 (619)
236 1mda_H Methylamine dehydrogena 99.1 1.9E-09 6.6E-14 117.8 20.1 221 827-1068 47-348 (368)
237 2ece_A 462AA long hypothetical 99.1 3.4E-08 1.2E-12 107.7 28.0 238 748-1001 93-399 (462)
238 1fwx_A Nitrous oxide reductase 99.1 1.7E-08 5.8E-13 114.2 26.5 244 807-1068 86-433 (595)
239 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.1E-07 3.9E-12 106.4 33.2 233 361-637 56-297 (376)
240 3s94_A LRP-6, low-density lipo 99.1 0.00012 4E-09 86.5 58.7 461 341-922 35-512 (619)
241 3hxj_A Pyrrolo-quinoline quino 99.0 8.7E-09 3E-13 113.2 20.8 176 414-633 26-201 (330)
242 2hz6_A Endoplasmic reticulum t 98.9 3E-10 1E-14 126.4 3.5 186 816-1021 8-200 (369)
243 2hz6_A Endoplasmic reticulum t 98.9 4.7E-10 1.6E-14 124.8 4.5 189 858-1074 8-200 (369)
244 3hxj_A Pyrrolo-quinoline quino 98.9 2.5E-07 8.5E-12 101.4 25.8 296 701-1068 30-326 (330)
245 1fwx_A Nitrous oxide reductase 98.9 4.9E-08 1.7E-12 110.5 19.3 237 747-1016 98-434 (595)
246 1kv9_A Type II quinohemoprotei 98.8 5.3E-07 1.8E-11 108.3 26.1 167 851-1021 234-496 (668)
247 2iwa_A Glutamine cyclotransfer 98.8 4.7E-07 1.6E-11 93.1 21.7 200 807-1014 22-238 (266)
248 2iwa_A Glutamine cyclotransfer 98.8 4.4E-07 1.5E-11 93.2 21.5 217 836-1068 9-239 (266)
249 3ei3_A DNA damage-binding prot 98.8 0.0014 5E-08 82.6 57.6 224 819-1066 708-999 (1158)
250 1npe_A Nidogen, entactin; glyc 98.8 5.4E-06 1.8E-10 87.4 29.9 202 807-1021 37-246 (267)
251 4a0p_A LRP6, LRP-6, low-densit 98.8 0.001 3.6E-08 78.5 59.4 501 344-975 35-555 (628)
252 2ad6_A Methanol dehydrogenase 98.8 3.7E-06 1.3E-10 98.7 31.1 196 810-1021 239-502 (571)
253 1w6s_A Methanol dehydrogenase 98.8 3E-06 1E-10 99.2 29.9 166 851-1021 245-511 (599)
254 1kv9_A Type II quinohemoprotei 98.7 2.5E-06 8.4E-11 102.5 28.2 81 826-908 438-520 (668)
255 3ott_A Two-component system se 98.7 0.0024 8.1E-08 78.5 63.0 534 345-1066 62-626 (758)
256 3nol_A Glutamine cyclotransfer 98.7 6.9E-07 2.4E-11 90.3 18.4 201 837-1053 32-243 (262)
257 3nol_A Glutamine cyclotransfer 98.7 1.2E-06 4.3E-11 88.5 19.8 186 806-1002 43-244 (262)
258 3nok_A Glutaminyl cyclase; bet 98.7 4.6E-07 1.6E-11 91.4 16.3 198 837-1053 44-253 (268)
259 1flg_A Protein (quinoprotein e 98.6 2.7E-05 9.3E-10 91.4 32.9 167 851-1021 250-524 (582)
260 1npe_A Nidogen, entactin; glyc 98.6 1.2E-05 4.3E-10 84.6 27.1 228 818-1068 2-240 (267)
261 2ad6_A Methanol dehydrogenase 98.6 1.2E-05 4E-10 94.4 29.4 110 469-601 65-194 (571)
262 3nok_A Glutaminyl cyclase; bet 98.6 2.8E-06 9.6E-11 85.8 20.3 184 806-1001 55-253 (268)
263 1flg_A Protein (quinoprotein e 98.6 6.9E-05 2.4E-09 87.9 34.7 217 419-639 68-358 (582)
264 2fp8_A Strictosidine synthase; 98.6 3.1E-05 1.1E-09 84.1 28.8 238 807-1068 20-315 (322)
265 1w6s_A Methanol dehydrogenase 98.5 3.3E-05 1.1E-09 90.4 30.1 78 826-905 453-531 (599)
266 3mbr_X Glutamine cyclotransfer 98.5 8.6E-06 2.9E-10 81.7 20.5 202 837-1054 10-223 (243)
267 3ei3_A DNA damage-binding prot 98.5 0.0097 3.3E-07 75.2 59.2 214 783-1011 808-1060(1158)
268 3mbr_X Glutamine cyclotransfer 98.5 1.8E-05 6E-10 79.4 22.3 188 805-1002 20-223 (243)
269 2fp8_A Strictosidine synthase; 98.5 3.2E-05 1.1E-09 84.0 26.0 251 740-1013 20-313 (322)
270 2p4o_A Hypothetical protein; p 98.5 0.00019 6.5E-09 77.1 31.7 245 333-626 19-278 (306)
271 3qqz_A Putative uncharacterize 98.4 7.4E-05 2.5E-09 76.3 25.7 219 841-1064 21-251 (255)
272 2p4o_A Hypothetical protein; p 98.4 8.8E-05 3E-09 79.8 28.0 226 739-1004 32-279 (306)
273 2xe4_A Oligopeptidase B; hydro 98.4 2.7E-05 9.4E-10 95.1 25.3 159 347-529 175-354 (751)
274 2xe4_A Oligopeptidase B; hydro 98.4 2.8E-05 9.6E-10 95.0 25.0 195 807-1011 175-398 (751)
275 2xbg_A YCF48-like protein; pho 98.4 0.00087 3E-08 72.5 33.9 279 739-1064 36-320 (327)
276 3tc9_A Hypothetical hydrolase; 98.3 0.0002 6.8E-09 80.7 27.6 247 807-1065 138-429 (430)
277 1ijq_A LDL receptor, low-densi 98.3 0.00054 1.8E-08 73.8 29.5 208 805-1021 29-246 (316)
278 4hw6_A Hypothetical protein, I 98.3 0.00036 1.2E-08 78.6 28.6 249 807-1065 140-432 (433)
279 1k3i_A Galactose oxidase precu 98.2 8.7E-05 3E-09 89.4 24.8 238 806-1055 243-530 (656)
280 3ott_A Two-component system se 98.2 0.029 9.8E-07 68.8 56.9 540 407-1068 21-588 (758)
281 3v64_C Agrin; beta propeller, 98.2 0.0012 4E-08 72.2 30.9 205 806-1021 73-283 (349)
282 3v64_C Agrin; beta propeller, 98.2 0.00063 2.2E-08 74.3 27.8 237 808-1068 36-277 (349)
283 3v65_B Low-density lipoprotein 98.2 0.0005 1.7E-08 76.4 27.2 205 806-1021 116-326 (386)
284 3qqz_A Putative uncharacterize 98.2 0.00096 3.3E-08 68.0 26.7 212 344-590 25-251 (255)
285 3p5b_L Low density lipoprotein 98.1 0.0013 4.4E-08 73.3 29.9 208 805-1021 111-328 (400)
286 2xbg_A YCF48-like protein; pho 98.1 0.0095 3.2E-07 64.3 35.0 235 343-629 33-272 (327)
287 1ijq_A LDL receptor, low-densi 98.1 0.0036 1.2E-07 67.2 31.5 224 368-637 10-239 (316)
288 3p5b_L Low density lipoprotein 98.1 0.0027 9.3E-08 70.7 31.2 230 818-1068 84-322 (400)
289 1k3i_A Galactose oxidase precu 98.1 0.00025 8.6E-09 85.3 23.7 243 810-1068 190-499 (656)
290 3v65_B Low-density lipoprotein 98.1 0.0022 7.7E-08 71.0 29.4 216 339-600 109-326 (386)
291 3amr_A 3-phytase; beta-propell 98.0 0.0012 4E-08 69.9 25.0 196 817-1022 40-273 (355)
292 3tc9_A Hypothetical hydrolase; 98.0 0.0021 7.3E-08 72.3 27.8 255 346-635 137-429 (430)
293 3kya_A Putative phosphatase; s 98.0 0.0031 1E-07 70.9 28.1 253 807-1068 140-477 (496)
294 3kya_A Putative phosphatase; s 97.9 0.002 6.7E-08 72.4 25.8 254 740-1018 140-480 (496)
295 4hw6_A Hypothetical protein, I 97.9 0.0035 1.2E-07 70.5 27.8 254 346-635 139-432 (433)
296 1n7d_A LDL receptor, low-densi 97.9 9.4E-05 3.2E-09 88.9 15.2 207 806-1021 406-622 (699)
297 3m0c_C LDL receptor, low-densi 97.8 0.0089 3E-07 72.1 31.3 207 805-1020 423-639 (791)
298 3sov_A LRP-6, low-density lipo 97.8 0.0044 1.5E-07 66.4 25.5 204 807-1021 36-246 (318)
299 3sov_A LRP-6, low-density lipo 97.7 0.009 3.1E-07 63.9 25.6 210 345-600 34-246 (318)
300 3amr_A 3-phytase; beta-propell 97.7 0.0065 2.2E-07 64.2 23.1 189 860-1065 41-262 (355)
301 2p9w_A MAL S 1 allergenic prot 97.5 0.013 4.5E-07 61.3 22.9 205 805-1013 12-265 (334)
302 2ism_A Putative oxidoreductase 97.5 0.015 5.3E-07 63.2 24.9 230 807-1054 32-333 (352)
303 3a9g_A Putative uncharacterize 97.5 0.06 2E-06 58.5 29.3 228 806-1054 29-330 (354)
304 3m0c_C LDL receptor, low-densi 97.5 0.037 1.3E-06 66.8 29.9 208 406-637 422-633 (791)
305 2xzh_A Clathrin heavy chain 1; 97.4 0.15 5.2E-06 52.7 32.3 248 350-637 71-333 (365)
306 2xzh_A Clathrin heavy chain 1; 97.4 0.18 6.2E-06 52.1 30.8 234 809-1068 70-334 (365)
307 2g8s_A Glucose/sorbosone dehyd 97.4 0.054 1.9E-06 58.9 26.4 241 807-1065 19-351 (353)
308 1bpo_A Protein (clathrin); cla 97.3 0.24 8.3E-06 53.3 30.9 248 350-637 70-332 (494)
309 1n7d_A LDL receptor, low-densi 97.3 0.0025 8.6E-08 76.5 16.7 204 408-637 406-615 (699)
310 3a9g_A Putative uncharacterize 97.2 0.34 1.2E-05 52.4 30.9 108 345-472 28-152 (354)
311 1bpo_A Protein (clathrin); cla 97.2 0.34 1.2E-05 52.2 30.3 267 709-1017 46-335 (494)
312 2p9w_A MAL S 1 allergenic prot 97.2 0.0097 3.3E-07 62.3 17.2 164 893-1066 16-215 (334)
313 3ii7_A Kelch-like protein 7; p 97.2 0.06 2.1E-06 57.3 24.3 224 819-1068 14-274 (306)
314 2ism_A Putative oxidoreductase 97.2 0.13 4.3E-06 55.9 26.9 109 344-472 29-152 (352)
315 2vpj_A Kelch-like protein 12; 97.1 0.058 2E-06 57.3 22.4 219 826-1068 31-280 (301)
316 2xn4_A Kelch-like protein 2; s 97.0 0.098 3.3E-06 55.5 23.1 220 826-1073 30-281 (302)
317 3pbp_A Nucleoporin NUP82; beta 96.9 0.052 1.8E-06 58.5 19.8 109 810-920 25-158 (452)
318 1cru_A Protein (soluble quinop 96.9 0.4 1.4E-05 53.9 27.8 104 806-909 27-163 (454)
319 2vpj_A Kelch-like protein 12; 96.8 0.096 3.3E-06 55.5 21.6 188 815-1017 61-282 (301)
320 1zgk_A Kelch-like ECH-associat 96.8 0.2 6.8E-06 53.2 24.1 228 815-1068 23-289 (308)
321 3das_A Putative oxidoreductase 96.8 0.66 2.3E-05 49.5 27.1 234 805-1054 31-326 (347)
322 4asc_A Kelch repeat and BTB do 96.8 0.33 1.1E-05 51.7 25.4 220 825-1068 12-279 (315)
323 3sre_A PON1, serum paraoxonase 96.6 0.27 9.3E-06 52.7 22.7 190 847-1056 50-287 (355)
324 3ii7_A Kelch-like protein 7; p 96.5 0.16 5.6E-06 53.8 20.8 190 815-1017 54-276 (306)
325 3pbp_A Nucleoporin NUP82; beta 96.3 0.044 1.5E-06 59.0 13.9 126 346-481 66-208 (452)
326 2uvk_A YJHT; unknown function, 96.2 0.39 1.3E-05 52.2 22.1 231 816-1068 19-344 (357)
327 2g8s_A Glucose/sorbosone dehyd 96.2 0.87 3E-05 49.2 24.3 113 346-473 18-149 (353)
328 3sre_A PON1, serum paraoxonase 96.0 0.35 1.2E-05 51.9 19.7 186 409-624 51-285 (355)
329 4asc_A Kelch repeat and BTB do 96.0 0.43 1.5E-05 50.8 20.7 193 812-1019 41-283 (315)
330 1xi4_A Clathrin heavy chain; a 95.9 0.39 1.4E-05 59.9 21.5 236 809-1068 69-333 (1630)
331 3sbq_A Nitrous-oxide reductase 95.9 1.6 5.6E-05 48.6 24.2 195 815-1014 140-409 (638)
332 2woz_A Kelch repeat and BTB do 95.9 1.4 4.7E-05 46.8 24.1 219 826-1068 24-289 (318)
333 2be1_A Serine/threonine-protei 95.8 0.069 2.4E-06 56.7 12.8 199 860-1071 11-236 (339)
334 2uvk_A YJHT; unknown function, 95.8 0.96 3.3E-05 49.0 22.7 59 961-1021 286-350 (357)
335 2xn4_A Kelch-like protein 2; s 95.7 0.49 1.7E-05 49.9 19.5 187 816-1017 61-280 (302)
336 1zgk_A Kelch-like ECH-associat 95.7 0.73 2.5E-05 48.7 20.9 187 816-1017 70-291 (308)
337 1tl2_A L10, protein (tachylect 95.7 0.29 1E-05 47.5 15.2 148 847-1006 41-203 (236)
338 1tl2_A L10, protein (tachylect 95.4 0.065 2.2E-06 52.0 9.7 146 807-962 42-203 (236)
339 3s25_A Hypothetical 7-bladed b 95.2 2.6 9E-05 44.1 22.6 173 813-1015 21-218 (302)
340 2woz_A Kelch repeat and BTB do 95.2 1.2 4.1E-05 47.3 20.5 193 812-1019 52-293 (318)
341 1xi4_A Clathrin heavy chain; a 94.9 0.7 2.4E-05 57.7 18.9 247 350-636 70-331 (1630)
342 3das_A Putative oxidoreductase 94.8 5.1 0.00017 42.6 29.0 113 344-472 30-157 (347)
343 2be1_A Serine/threonine-protei 94.7 0.24 8.3E-06 52.6 12.6 147 825-974 66-236 (339)
344 2zwa_A Leucine carboxyl methyl 94.6 1.9 6.6E-05 51.4 21.8 197 815-1017 396-639 (695)
345 1cru_A Protein (soluble quinop 94.4 3.9 0.00013 45.7 22.6 109 891-1002 28-163 (454)
346 3b7f_A Glycosyl hydrolase, BNR 93.1 12 0.00041 40.8 27.3 260 805-1073 54-377 (394)
347 3s25_A Hypothetical 7-bladed b 92.9 10 0.00035 39.5 26.2 174 811-1014 58-256 (302)
348 2nxp_A Transcription initiatio 92.8 0.17 5.9E-06 46.7 6.3 78 59-136 52-136 (156)
349 3qhy_B Beta-lactamase inhibito 92.4 9.6 0.00033 39.3 20.0 223 807-1067 25-247 (282)
350 2j4b_A TAF5, transcription ini 92.1 0.12 4.3E-06 46.3 4.3 77 59-136 33-116 (138)
351 2j49_A Transcription initiatio 90.8 0.1 3.5E-06 47.4 2.3 77 59-136 35-118 (148)
352 2zwa_A Leucine carboxyl methyl 90.0 9.9 0.00034 45.2 19.5 196 858-1068 397-637 (695)
353 3q6k_A 43.2 kDa salivary prote 90.0 23 0.00079 37.9 21.1 156 826-1013 123-306 (381)
354 4hvt_A Ritya.17583.B, post-pro 89.4 31 0.001 40.9 22.7 236 809-1065 132-429 (711)
355 3sbq_A Nitrous-oxide reductase 86.9 3.5 0.00012 46.0 11.3 114 805-921 322-479 (638)
356 3qhy_B Beta-lactamase inhibito 86.5 31 0.0011 35.3 21.1 184 807-1014 64-247 (282)
357 2wg3_C Hedgehog-interacting pr 85.4 9.1 0.00031 42.7 14.2 113 891-1004 15-160 (463)
358 2wg3_C Hedgehog-interacting pr 79.3 82 0.0028 34.9 29.4 115 346-473 14-158 (463)
359 4gq2_M Nucleoporin NUP120; bet 78.1 7.4 0.00025 48.1 10.9 82 982-1068 235-319 (950)
360 3q6k_A 43.2 kDa salivary prote 77.7 79 0.0027 33.8 23.3 63 429-492 123-197 (381)
361 4gq2_M Nucleoporin NUP120; bet 75.2 81 0.0028 38.9 19.1 73 563-635 237-316 (950)
362 3b7f_A Glycosyl hydrolase, BNR 74.4 99 0.0034 33.3 23.1 202 859-1072 22-266 (394)
363 3no0_A DNA gyrase subunit A; D 69.9 99 0.0034 31.4 21.6 114 804-920 66-196 (276)
364 3lpz_A GET4 (YOR164C homolog); 69.7 28 0.00097 36.3 11.0 110 25-173 16-129 (336)
365 3uc1_A DNA gyrase subunit A; D 67.1 1.3E+02 0.0043 31.5 27.2 158 805-969 94-279 (327)
366 3kci_A Probable E3 ubiquitin-p 66.9 1.4E+02 0.0048 32.0 23.4 70 848-920 212-293 (389)
367 2wpv_A GET4, UPF0363 protein Y 63.7 41 0.0014 34.8 10.8 110 25-173 17-127 (312)
368 1wp5_A Topoisomerase IV; broke 54.3 2.1E+02 0.007 29.8 23.1 248 355-636 3-277 (323)
369 3bu8_A Telomeric repeat-bindin 52.5 20 0.00067 34.1 5.4 96 58-173 111-207 (235)
370 1zi0_A DNA gyrase subunit A; b 51.7 2.2E+02 0.0075 29.3 24.4 202 360-591 5-225 (307)
371 3zwu_A Alkaline phosphatase PH 51.4 34 0.0011 39.2 8.5 60 941-1001 477-549 (592)
372 4hvt_A Ritya.17583.B, post-pro 50.5 3.7E+02 0.013 31.6 29.3 180 826-1015 216-431 (711)
373 4a9v_A PHOX; hydrolase, beta-p 48.9 45 0.0015 37.7 8.7 61 940-1001 476-549 (592)
374 3f7f_A Nucleoporin NUP120; nuc 48.0 47 0.0016 38.7 8.9 37 984-1022 223-259 (729)
375 4fhn_B Nucleoporin NUP120; pro 46.4 14 0.00049 46.8 4.9 42 983-1024 238-279 (1139)
376 2zux_A YESW protein; beta-prop 42.7 4.1E+02 0.014 29.9 22.9 42 451-493 177-246 (591)
377 2ion_A PDCD4, programmed cell 39.7 36 0.0012 30.9 5.1 20 67-86 15-34 (152)
378 3uc1_A DNA gyrase subunit A; D 39.0 3.5E+02 0.012 28.0 27.3 204 805-1014 41-280 (327)
379 2nsz_A Programmed cell death p 39.0 39 0.0013 29.7 5.1 20 67-86 13-32 (129)
380 2zux_A YESW protein; beta-prop 38.3 4.7E+02 0.016 29.4 26.1 180 344-537 177-408 (591)
381 3ma5_A Tetratricopeptide repea 38.3 40 0.0014 27.6 5.0 70 30-106 16-87 (100)
382 1suu_A DNA gyrase subunit A; t 38.2 3.5E+02 0.012 27.8 28.8 202 699-920 6-231 (312)
383 4fhn_B Nucleoporin NUP120; pro 38.2 51 0.0017 41.7 8.1 39 563-601 239-277 (1139)
384 3no0_A DNA gyrase subunit A; D 36.9 3.4E+02 0.012 27.3 23.5 205 848-1066 25-246 (276)
385 3l6v_A GYRA, DNA gyrase subuni 35.2 4.3E+02 0.015 28.0 24.3 252 355-636 5-316 (370)
386 3f7f_A Nucleoporin NUP120; nuc 33.5 1.9E+02 0.0066 33.7 10.9 31 571-601 229-259 (729)
387 4gco_A Protein STI-1; structur 32.7 56 0.0019 28.2 5.3 72 30-108 22-93 (126)
388 3bqo_A Telomeric repeat-bindin 32.3 67 0.0023 30.1 5.5 94 39-140 96-189 (211)
389 1am7_A Lysozyme; glycosidase, 31.7 19 0.00065 32.7 1.9 59 32-91 69-127 (158)
390 4ga2_A E3 SUMO-protein ligase 30.7 1.5E+02 0.0053 26.2 8.2 98 4-108 9-111 (150)
391 4a9v_A PHOX; hydrolase, beta-p 26.0 2E+02 0.0069 32.5 9.2 59 806-865 476-548 (592)
392 1vk8_A Hypothetical protein TM 25.9 9.7 0.00033 31.9 -1.0 32 15-47 41-72 (106)
393 1hxi_A PEX5, peroxisome target 25.5 92 0.0031 26.5 5.3 70 29-107 25-96 (121)
394 3elq_A Arylsulfate sulfotransf 24.3 8E+02 0.027 27.6 17.0 132 941-1077 208-395 (571)
395 3zwu_A Alkaline phosphatase PH 23.8 1.7E+02 0.0058 33.4 8.3 58 807-865 477-548 (592)
396 2lni_A Stress-induced-phosphop 23.8 1.2E+02 0.0041 25.5 5.9 72 30-108 25-96 (133)
397 3mez_A Mannose-specific lectin 23.5 3.2E+02 0.011 22.8 9.1 79 893-999 22-100 (111)
398 3tso_C RAB11 family-interactin 23.4 39 0.0013 25.8 1.9 20 3-22 14-33 (75)
399 3kci_A Probable E3 ubiquitin-p 22.9 6.9E+02 0.024 26.4 26.4 202 417-636 60-293 (389)
400 1zi0_A DNA gyrase subunit A; b 22.8 6.2E+02 0.021 25.8 28.2 202 805-1013 41-277 (307)
401 1yqh_A DUF77, IG hypothetical 22.8 12 0.00042 31.6 -1.0 32 15-47 33-64 (109)
402 4gco_A Protein STI-1; structur 22.6 1.1E+02 0.0036 26.3 5.1 70 30-106 56-125 (126)
403 2dba_A Smooth muscle cell asso 22.4 1.2E+02 0.004 26.3 5.7 76 29-108 36-111 (148)
404 2zuy_A YESX protein; beta-prop 22.2 8.8E+02 0.03 27.4 21.9 228 355-618 109-430 (620)
405 1na3_A Designed protein CTPR2; 21.8 1.4E+02 0.0047 22.9 5.5 69 30-105 18-86 (91)
406 2kck_A TPR repeat; tetratricop 21.7 1.4E+02 0.0048 23.9 5.8 72 30-108 15-88 (112)
407 3upv_A Heat shock protein STI1 21.2 1.2E+02 0.0042 25.5 5.3 72 30-108 13-84 (126)
408 2epi_A UPF0045 protein MJ1052; 21.0 11 0.00039 31.3 -1.5 31 16-47 33-63 (100)
409 1mki_A Probable glutaminase YB 20.6 1.4E+02 0.0048 30.6 5.9 85 14-108 114-213 (330)
410 1suu_A DNA gyrase subunit A; t 20.0 7.1E+02 0.024 25.4 30.3 192 815-1015 6-233 (312)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-67 Score=636.44 Aligned_cols=566 Identities=23% Similarity=0.361 Sum_probs=470.2
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.++.+|++.|+|++|||||++ ||+|+.|+.|+|||. +++.+. .+.+|.+.|++++||||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence 446679999999999999996 999999999999995 566554 37899999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
|++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+.. ......+.+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999975 44443 6889999999999999999 79999999999999954 4556677889999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.++.+. +++..+++++.++.+++|+... ........+... +..+.++|+++++++
T Consensus 142 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 142 VWGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSS---------------------VWGVAFSPDGQTIAS 197 (577)
T ss_dssp EEEEEEC--TTSSCEEEEETTSEEEEECTTS-CEEEEEECCSSC---------------------EEEEEECTTSSCEEE
T ss_pred eeeeeee--cCCccceecccccceeccccce-eeeeeccCCCcc---------------------eeeeeecCCCCEEEE
Confidence 9998874 5567899999999999998653 233333344444 445555556668999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
++.|+.|++||. +++.+..+..+. ..|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.
T Consensus 198 ~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------ 266 (577)
T 2ymu_A 198 ASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------ 266 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred EcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence 999999999996 567777777654 479999999999999999999999999954 3 45555555544322
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.+.+.+++..+++++.|+.+++|+.... ....+ .+|.
T Consensus 267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~~----~~~~~----~~h~ 303 (577)
T 2ymu_A 267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNGQ----LLQTL----TGHS 303 (577)
T ss_dssp -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCS
T ss_pred -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCCc----EEEEE----ecCC
Confidence 2345678899999999999999996531 11211 3588
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+++|+|+++.+++++.|+.+++|+.... .+.. +. +|...+.+++|+|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence 99999999999999999999999999986321 1111 12 2788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF 897 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~ 897 (1101)
++++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus 358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 999999 899999995 5788889999999999999999 9999999999999999995 57888899999999999999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeec
Q 001318 898 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW 976 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~ 976 (1101)
+||+++|++++.|++|++||.... .+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 999999999999999999997542 233344444 48999999999999999 58999999995 57777777
Q ss_pred cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 977 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
. +|...|++++|+|||++|++++.||.|+|||. +++.+..+. +|... |. +++|+| |+++|++++.|
T Consensus 505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSD 570 (577)
T ss_dssp E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETT
T ss_pred e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCC
Confidence 6 78999999999999999999999999999996 677777766 44333 66 899999 78999999999
Q ss_pred CcEEEEe
Q 001318 1057 GGVHVFE 1063 (1101)
Q Consensus 1057 g~v~vW~ 1063 (1101)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-65 Score=621.14 Aligned_cols=577 Identities=14% Similarity=0.131 Sum_probs=449.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+.+.+.+++|+|||++ ||+++ ++.|+|||+.+++... .+.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5778899999999996 77777 5799999998876655 4789999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC----CcEEEEeCCCCceEEEecCcccCe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999997655432 235788999999999999999 67777654 3677776 577778899999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
++++|+++.. ..|++++.|++|++||..+.+....+..|...|.+++|+|+| ++|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------------~~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------------CEEEEE
Confidence 9999965432 369999999999999988776666777777766666666655 579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccccc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 654 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 654 (1101)
+.|++|++||+.+++.+..+... .|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~--- 284 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE--- 284 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence 99999999999999988887421 34557999999999999999999999999999887 4444443211000
Q ss_pred CCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCc
Q 001318 655 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 734 (1101)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 734 (1101)
........++..+++++.|+.+++|+..... ....+
T Consensus 285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~---- 320 (611)
T 1nr0_A 285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR---- 320 (611)
T ss_dssp -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence 0001111256789999999999999976432 11111
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +....... .+|...|.+++|+
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 45899999999999999999999999999998743 22221111 2388899999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceeeE---ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
+++. +++++ |+.+++|++.++..... .........+++|+| ++++++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8875 55555 99999999886543211 011234578899999 78777766 567899998 344 45554 788
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCC
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 969 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~ 969 (1101)
.+.+++|+|||++||+++.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++||+.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998754211 122 2333 47999999999999999 5899999999988
Q ss_pred -ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee-e-eecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 970 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 970 -~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
++........+|...|.+++|+|||++|++|+.|++|+|||+.++.. . ..+. +|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence 66654422335999999999999999999999999999999988753 2 2222 44233366 899999 5
Q ss_pred CCEEEEEecCCcEEEEecc
Q 001318 1047 PNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~ 1065 (1101)
++ |++++.||+|++|++.
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999983
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-63 Score=599.76 Aligned_cols=565 Identities=22% Similarity=0.357 Sum_probs=466.0
Q ss_pred ccccccCCCCcccccCCcccccccccCCCCCC-----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEe
Q 001318 291 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT 365 (1101)
Q Consensus 291 ~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~ 365 (1101)
++++.|+.||++.| ..++|++++... ...+.+|..+ ...+..+.+|...|++++|+|||++ ||+|+
T Consensus 6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~-las~~ 76 (577)
T 2ymu_A 6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQT-IASAS 76 (577)
T ss_dssp CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence 45778899999999 999999988743 2345566532 2334444569999999999999995 99999
Q ss_pred cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee
Q 001318 366 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 366 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~ 445 (1101)
.|++|+|||.. ++.+. .+.+|...|.+++|+|||++|++++.|+.+++|+.......
T Consensus 77 ~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~--- 133 (577)
T 2ymu_A 77 DDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--- 133 (577)
T ss_dssp TTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred CCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence 99999999964 55544 37899999999999999999999999999999998764332
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++. +++.++++++.|+.|++|
T Consensus 134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS--PDGQTIASASDDKTVKLW 207 (577)
T ss_dssp -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSEEEEE
T ss_pred -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeec--CCCCEEEEEcCCCEEEEE
Confidence 4678999999999999999 6899999999999994 555667777899999999874 566899999999999999
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 605 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 605 (1101)
|.. .+....+..+...+.+++|+|+ ++++++++.|+.|++||. +++.+..+..+.
T Consensus 208 ~~~-~~~~~~~~~~~~~v~~~~~s~d---------------------g~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~-- 262 (577)
T 2ymu_A 208 NRN-GQLLQTLTGHSSSVRGVAFSPD---------------------GQTIASASDDKTVKLWNR-NGQLLQTLTGHS-- 262 (577)
T ss_dssp CTT-SCEEEEEECCSSCEEEEEECTT---------------------SSCEEEEETTSCEEEECT-TSCEEEEECCCS--
T ss_pred eCC-CcEEEEEecCCCCEEEEEECCC---------------------CCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--
Confidence 964 3455555566555555555554 457999999999999996 567777777554
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 606 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 606 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
..|.+++|+|++++|++++.|+.|++|+.. + +....+.+|...+.
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~-~~~~~~~~h~~~v~--------------------------------- 307 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVW--------------------------------- 307 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT-S-CEEEEECCCSSCEE---------------------------------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C-cEEEEEecCCCCeE---------------------------------
Confidence 479999999999999999999999999964 3 44555655554322
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEee
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 765 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 765 (1101)
.+.+.+++..+++++.|+.+++|++... ....+ .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus 308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 2345678899999999999999997642 22222 3478899999999999999999999999999
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP 844 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~ 844 (1101)
+.. +..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+
T Consensus 372 ~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~ 424 (577)
T 2ymu_A 372 NRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 424 (577)
T ss_dssp ETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred cCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence 852 111111 22 2788999999999999999998 899999995 5788889999
Q ss_pred CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc
Q 001318 845 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 924 (1101)
Q Consensus 845 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~ 924 (1101)
|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +
T Consensus 425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-- 499 (577)
T 2ymu_A 425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-- 499 (577)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence 999999999999 8999999999999999996 5778889999999999999999999999999999999999643 2
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1003 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d 1003 (1101)
++....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+. +|.+.|++++|+|||++|++++.|
T Consensus 500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence 344455555 48999999999999999 58899999996 577777776 899999999999999999999999
Q ss_pred CeEEEEE
Q 001318 1004 ATVCVFS 1010 (1101)
Q Consensus 1004 g~v~vwd 1010 (1101)
++|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.9e-62 Score=590.69 Aligned_cols=568 Identities=14% Similarity=0.172 Sum_probs=440.0
Q ss_pred ccccccCCCCCC----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeee
Q 001318 311 LPVSFTGHSHSH----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 386 (1101)
Q Consensus 311 ~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~ 386 (1101)
+.++|++++... .....+|.... ........+|.+.|++++|||||++ ||+|+.|++|+|||+.+++.....
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-- 97 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-- 97 (611)
T ss_dssp CCCEECTTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE--
T ss_pred eEEeeCCCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE--
Confidence 455677666421 11233444331 2233334579999999999999995 999999999999999765443211
Q ss_pred eeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC----CeEEEEEccCCceeeeeeeeccccCCeeEEEEcC
Q 001318 387 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 462 (1101)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~ 462 (1101)
.+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|++++|+|
T Consensus 98 ---------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 98 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFKP 157 (611)
T ss_dssp ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEECS
T ss_pred ---------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEECC
Confidence 367899999999999999999999875 46777774 44443 5889999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-----
Q 001318 463 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE----- 537 (1101)
Q Consensus 463 d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~----- 537 (1101)
++.. .|++|+.|++|++||..+++++.++.+|...|.+++|+ +++++|++++.|++|++||+.+++....+.
T Consensus 158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccccc
Confidence 9874 59999999999999999999999999999999999985 566899999999999999998877665552
Q ss_pred --CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCCcCeEEEc
Q 001318 538 --APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFN 614 (1101)
Q Consensus 538 --~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s 614 (1101)
.|.. .+..++|+|++++|++++.|++|++||+.+++.+..+..... ...+..+.|
T Consensus 235 ~~~h~~---------------------~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (611)
T 1nr0_A 235 NVAHSG---------------------SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW- 292 (611)
T ss_dssp SCSSSS---------------------CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-
T ss_pred ccccCC---------------------CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE-
Confidence 3444 445555555666899999999999999999999888864321 112334445
Q ss_pred cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCc
Q 001318 615 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD 694 (1101)
Q Consensus 615 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1101)
+++.+++++.|+.+++|+..++ .....+.+|...+. .
T Consensus 293 -~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~-----------------------------------------~ 329 (611)
T 1nr0_A 293 -TKQALVSISANGFINFVNPELG-SIDQVRYGHNKAIT-----------------------------------------A 329 (611)
T ss_dssp -CSSCEEEEETTCCEEEEETTTT-EEEEEECCCSSCEE-----------------------------------------E
T ss_pred -cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCCCCCEE-----------------------------------------E
Confidence 7889999999999999998877 45666666665433 2
Q ss_pred cccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 695 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 695 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
+.++++++.+++++.|++|++||+....... ....+|...|.+++|++++ .+++++.|+.+++|+........
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCT
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceee------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccc
Confidence 4466789999999999999999998643211 1113488999999999876 58899999999999874322110
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEE
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 854 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 854 (1101)
.. ..... ....+.+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|
T Consensus 403 ~~-----------------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~ 456 (611)
T 1nr0_A 403 SK-----------------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVAL 456 (611)
T ss_dssp TS-----------------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEE
T ss_pred cc-----------------eeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEE
Confidence 00 00000 23456789999999998888899999999 334 55555 7788999999
Q ss_pred ecCCCcEEEEEeccCeEEEEEeecceE--eeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccceeeec
Q 001318 855 HPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQI 931 (1101)
Q Consensus 855 sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~ 931 (1101)
+| |+++||+|+.|++|++||+.++.. +.. .+|...|++|+|+|||++|++++.|++|++|++.+ ++.... ..
T Consensus 457 sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~ 531 (611)
T 1nr0_A 457 SN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NS 531 (611)
T ss_dssp CT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CC
T ss_pred eC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---ee
Confidence 99 999999999999999999987653 334 67999999999999999999999999999999986 332110 01
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCC-CCCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
..+|. ..|.+++|+|||++|++ +.|+.|++||+.++.........+| ...|++++|+||++ |++++.|++|++|
T Consensus 532 ~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 532 WTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 22344 48999999999999999 6899999999988753221123478 89999999999999 9999999999999
Q ss_pred EcC
Q 001318 1010 SAA 1012 (1101)
Q Consensus 1010 d~~ 1012 (1101)
++.
T Consensus 608 ~~~ 610 (611)
T 1nr0_A 608 NVP 610 (611)
T ss_dssp ECC
T ss_pred ecc
Confidence 973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-61 Score=637.54 Aligned_cols=600 Identities=14% Similarity=0.160 Sum_probs=490.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|.+.|++++|||+|++ +++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence 34569999999999999995 89999999999999999987763 77999999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 57789999999999997555489999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ +++.++++++.||+|++||+.+......+........... ........+.+++|+|++..++++
T Consensus 747 ~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 747 NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED--------PPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------------CCCCCBCCCCBCTTSSEEEEE
T ss_pred EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC--------ccccccceEEEEEECCCCCEEEEE
Confidence 999985 4568999999999999999998766555433221111000 001112356677788888888887
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+ ++.+.+||+.++..+..+.. .+...+.+++|+|+++++++++.||.|++|++.++ .....+.+|...+.
T Consensus 817 ~-~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~------- 886 (1249)
T 3sfz_A 817 A-KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVH------- 886 (1249)
T ss_dssp E-TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEE-------
T ss_pred c-CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceE-------
Confidence 7 68999999999998887752 33457999999999999999999999999999988 66666666655433
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc----------
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS---------- 729 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~---------- 729 (1101)
.+.+.+++..+++++.|+.+++|++...........
T Consensus 887 ----------------------------------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 887 ----------------------------------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp ----------------------------------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred ----------------------------------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 244567889999999999999999764211100000
Q ss_pred ----------------cc----cCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 730 ----------------LR----LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 730 ----------------~~----~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
.. .....+...+.+++|+|+++.+++++.+|.|++|++..
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-------------------- 992 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-------------------- 992 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--------------------
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--------------------
Confidence 00 00011346799999999999999999999999998742
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
+..... +. +|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|++ ++ .+++++.|
T Consensus 993 --~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~d 1064 (1249)
T 3sfz_A 993 --NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFD 1064 (1249)
T ss_dssp --TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESS
T ss_pred --Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECC
Confidence 222111 12 3889999999999999999998 8999999999987764 557899999999999 66 56788999
Q ss_pred CeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 869 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 869 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
|.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. .....+|. ..|.+++|+
T Consensus 1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~~~s 1136 (1249)
T 3sfz_A 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCSAFS 1136 (1249)
T ss_dssp SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEEEEC
T ss_pred CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999988653 34445554 489999999
Q ss_pred CCCcEEEE-EeCCeEEEEEcCCceeeeecc-------CCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 949 QDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 949 ~dg~~la~-~~d~~v~vwd~~~~~~~~~~~-------~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
|+|++|++ +.|+.|++||+.+++.+..+. ..+|...|++++|+|||++|++++ |.|++||+.+++.+..+
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence 99999999 578999999999998876651 136889999999999999999885 89999999999988766
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
. +| ...+. +++|+| |+++|++++.||.|++|++.
T Consensus 1215 ~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1215 Y-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp C-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred e-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence 5 22 22244 789999 78999999999999999985
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-58 Score=564.35 Aligned_cols=562 Identities=12% Similarity=0.144 Sum_probs=456.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc----ceeEeeeeeeeecCCCCcccccccccCCCCC-eEEEEEec
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 417 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp 417 (1101)
.|.+.|++++|+|||++ |++++ ++.|+|||+.++ +... .+.+|... |++++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 47899999999999996 77776 799999999987 5554 37899999 99999999
Q ss_pred --CCCeEEEEEcCCeEEEEEccCCc-----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC----CcEEEEeCCCC
Q 001318 418 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 486 (1101)
Q Consensus 418 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 486 (1101)
|+++||+|+.||+|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999997651 1223346778999999999999999 78888877 6788887 77
Q ss_pred ceEEEecCcccCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCC---ceeEEEEccCCceEEeccccC
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
+.+..+.+|...|.+++|+++ +. ++++++.|+.|++||+.+.+....+..|.. .+.+++|+|++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS---------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT----------
T ss_pred CcceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC----------
Confidence 888999999999999999654 44 899999999999999988777777666655 55555555540
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
++++++++.||.|++||+.+++.+..+... .+...|.+++|+ ++++|++++.|+.|++||+.++ +.
T Consensus 219 ----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~ 286 (615)
T 1pgu_A 219 ----------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KC 286 (615)
T ss_dssp ----------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EE
T ss_pred ----------CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cE
Confidence 468999999999999999999998888211 234479999999 9999999999999999999887 55
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+..+...... .......+++..+++++.++.+++|++..
T Consensus 287 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 287 VQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp EEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred EEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 5555433211000 00011123678999999999999999886
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..... .+ .+|...|.+++| |+ +++++.||.|++|++. . +.
T Consensus 329 ~~~~~---~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~----~~ 368 (615)
T 1pgu_A 329 DEVLK---TI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S----MH 368 (615)
T ss_dssp EEEEE---EE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----EE
T ss_pred CcEEE---EE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----hc
Confidence 32211 11 348899999999 88 9999999999999872 0 11
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..|...|.+++| +++.++++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.++
T Consensus 369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~ 437 (615)
T 1pgu_A 369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTG 437 (615)
T ss_dssp -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTC
T ss_pred -CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCC
Confidence 238899999999 6677788887 9999999998765433 688999999 88888877 8899999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 957 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~ 957 (1101)
+.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|++ +
T Consensus 438 ~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~ 507 (615)
T 1pgu_A 438 DIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGD 507 (615)
T ss_dssp CEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEE
T ss_pred ceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcC
Confidence 8888876 88899999999 899999999 9999999998854321 3344444 48999999999999999 5
Q ss_pred eCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcC----------CCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcc
Q 001318 958 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAY 1025 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~sp----------dg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~ 1025 (1101)
.|+.|++||+.+++.+..+. + |...|++++|+| |+++|++++.||.|++||+.++ +.+..+.
T Consensus 508 ~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---- 581 (615)
T 1pgu_A 508 VMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN---- 581 (615)
T ss_dssp TTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT----
T ss_pred CCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh----
Confidence 88999999999999988765 4 899999999999 9999999999999999999998 6776665
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+|.. .|. +++|+| |+. |++++.||+|++|++..
T Consensus 582 ---~h~~-~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 ---AHKD-GVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ---SSTT-CEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ---cCcc-ceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 3323 355 899999 667 99999999999999975
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-57 Score=565.29 Aligned_cols=613 Identities=11% Similarity=0.105 Sum_probs=435.1
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
....+|.+.|++++|+|+|+ +||+|+.||+|+|||..+.+... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34568999999999999999 49999999999999998776543 234788999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE---------
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 489 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 489 (1101)
|++|++++.|++|+|||+.+++.+.. +. |...|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 88999999999999999999887653 43 678999999999999 7999999999999999988764
Q ss_pred --EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc--eEEeccccCcee
Q 001318 490 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 565 (1101)
Q Consensus 490 --~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~~~ 565 (1101)
..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+...- .+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCeE
Confidence 234679999999999763 23689999999999 99999877666655441000 00000 000011234678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-----CCC-----------CCCCcCeEEEcc----CC-CEEEEEe
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFNK----DG-CLLAVST 624 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s~----~~-~~l~~~~ 624 (1101)
+++|+|+|++|++++.||.|++||+++++++.... .+. +...|.+++|++ ++ .+|++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 88888888999999999999999999998876422 121 233688999964 43 5677776
Q ss_pred CC-----CcEEEEEecCcccc-----------------ccccc-cccccccccCCCCCCcccccchhhhhhhcccccccc
Q 001318 625 ND-----NGIKILATSDGIRL-----------------LRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 681 (1101)
Q Consensus 625 ~d-----g~i~iw~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1101)
.+ +.+.+|++...... .+.+. .+...+. .+.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~~------------------ 349 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NIL------------------ 349 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EEE------------------
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EEE------------------
Confidence 65 37888885311000 00000 0000000 000
Q ss_pred cccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCce
Q 001318 682 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 761 (1101)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 761 (1101)
.............+...+++++.|+.+++|++..................|...|++++|++...
T Consensus 350 -----~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~---------- 414 (902)
T 2oaj_A 350 -----PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN---------- 414 (902)
T ss_dssp -----ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH----------
T ss_pred -----ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH----------
Confidence 00000000011123456788888999999998543211110000011133567888888865332
Q ss_pred EEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee-
Q 001318 762 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM- 839 (1101)
Q Consensus 762 i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~- 839 (1101)
.+|+...... +.. ...+. +|...+.+++|+|++++|++|+ |++|++||+.++...
T Consensus 415 -~~w~~~~~~~-------------------~~~-~~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 415 -KLWLGALSAA-------------------QNK-DYLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp -HHHHHHHHTT-------------------BCC-CCSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred -HHHHHHHhcc-------------------cCC-CCccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 3454321000 000 01122 3777788899999999999999 999999999887432
Q ss_pred -eEe----c-----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc------------------------------
Q 001318 840 -ATF----M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------------------------------ 879 (1101)
Q Consensus 840 -~~~----~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------------------------------ 879 (1101)
..+ . +|...|.+++|+| |+++||+|+.||+|+|||+.++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 111 1 7888999999999 9999999999999999999876
Q ss_pred ---------------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCC-CCCCCCCCCe
Q 001318 880 ---------------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDT 943 (1101)
Q Consensus 880 ---------------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~ 943 (1101)
+++..+.+|.+.|++|+||||| +||+|+.|++|+|||++++.......+..+. +|. ..|.
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~ 626 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVT 626 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceE
Confidence 2467888999999999999999 9999999999999999875532211122332 554 4899
Q ss_pred EEEEc-----CCC---cEEEE-EeCCeEEEEEc---CCceeeeeccCC---CCCCCeeEEE-Ec----------------
Q 001318 944 RVQFH-----QDQ---IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS---------------- 991 (1101)
Q Consensus 944 ~~~~s-----~dg---~~la~-~~d~~v~vwd~---~~~~~~~~~~~~---~h~~~i~~l~-~s---------------- 991 (1101)
+++|+ ||| ++|++ +.|++|++||+ .+|++...+..+ .|.++|.+++ |+
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~ 706 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQN 706 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHG
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhc
Confidence 99999 886 88888 68999999999 888887776521 1357888887 76
Q ss_pred ------CCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEE---E------EeCCCCCEEEEEecC
Q 001318 992 ------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSD 1056 (1101)
Q Consensus 992 ------pdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i---~------~~~~d~~~l~s~~~d 1056 (1101)
+++.+|+++ +..|+||++.+++..++.- +|. ..+. ++ . |++ ++..|++++.|
T Consensus 707 l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~ 773 (902)
T 2oaj_A 707 LSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEIN 773 (902)
T ss_dssp GGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETT
T ss_pred cCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCC
Confidence 566565554 7899999999999887653 111 1122 33 5 666 67899999999
Q ss_pred CcEEEEeccCCC
Q 001318 1057 GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 g~v~vW~~~~~~ 1068 (1101)
|+|++|++++.+
T Consensus 774 g~i~~~s~p~l~ 785 (902)
T 2oaj_A 774 GHLRVFTIPDFK 785 (902)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECcchH
Confidence 999999999999
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-57 Score=596.01 Aligned_cols=568 Identities=17% Similarity=0.224 Sum_probs=464.7
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 5789999999999999999 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++.+..+.+|...|.+++|++..++.++++|+.||.|++||+.++.....+..|...|.+++|+|++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~--------- 755 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD--------- 755 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence 99999999999999999999999887777899999999999999999988887777777766666666655
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-----------CCCCcCeEEEccCCCEEEEEeCCCcEE
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 630 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~ 630 (1101)
+++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 579999999999999999998877765321 123578999999999999988 68999
Q ss_pred EEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCC
Q 001318 631 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 710 (1101)
Q Consensus 631 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 710 (1101)
+|+..++........+|...+ ....+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence 999988843333222333221 234566788999999999
Q ss_pred CcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCce------------
Q 001318 711 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 778 (1101)
Q Consensus 711 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------ 778 (1101)
+.+++|++......... .+|...|.+++|+|+++.+++++.|+.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~~-------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADC-------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeeec-------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999863322111 34889999999999999999999999999999864322111100
Q ss_pred --eee----ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEE
Q 001318 779 --TAS----VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 851 (1101)
Q Consensus 779 --~~~----~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 851 (1101)
... ....++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 000 0122333333332221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeec
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++. ...
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence 99999 9999999999999999999998876 456899999999999975 678899999999999998763 233
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
..+|. ..|.+++|+|+|+++++ +.|+.|++||+.+++.+..+. +|...|++++|+|||++|++++.||+|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34444 37899999999999999 589999999999999887765 8899999999999999999999999999999
Q ss_pred cCCceeeeecCCCccc--CCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1011 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1011 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
+.+++.+..+...... ..+| ...+. +++|+| |+.++++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999988765321111 1122 22355 899999 788998885 9999999999873
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.7e-56 Score=539.92 Aligned_cols=548 Identities=12% Similarity=0.155 Sum_probs=450.0
Q ss_pred ccccccCCCCCC----CcCcCCCCCCCCC---cceeecccCCCC-cEEEEEec--CCCeEEEEEecCCcEEEEeCCCc--
Q 001318 311 LPVSFTGHSHSH----SHSQAFSTPEDLP---KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR-- 378 (1101)
Q Consensus 311 ~~v~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~h~~~-v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~-- 378 (1101)
..++|++++... .....+|...... .......+|... |++++|+| +|++ |++|+.||.|+|||+.++
T Consensus 22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~ 100 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKE 100 (615)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGG
T ss_pred eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCcc
Confidence 555666665422 2244455554221 345555679999 99999999 9995 999999999999999765
Q ss_pred ----ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcC----CeEEEEEccCCceeeeeeeecc
Q 001318 379 ----ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDA 450 (1101)
Q Consensus 379 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~ 450 (1101)
+.... ..+..|...|.+++|+|+|++|++++.+ +.|++|| +++.+. .+.+
T Consensus 101 ~~~~~~~~~-----------------~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~ 158 (615)
T 1pgu_A 101 SNSVEVNVK-----------------SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSG 158 (615)
T ss_dssp GTEEEEEEE-----------------EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCS
T ss_pred ccccccccc-----------------chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeec
Confidence 21111 1367899999999999999999999988 6888888 444443 5789
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc---CeEEEeeeecCC-ccEEEEEecCCcEEEEe
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN-IQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd 526 (1101)
|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|++ + +++|++++.||.|++||
T Consensus 159 ~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 159 HSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEE
T ss_pred CCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEE
Confidence 9999999999999975 689999999999999999999999999999 999999854 4 68999999999999999
Q ss_pred cCCCCceeee-c---CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC
Q 001318 527 YDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 527 ~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
+.+++....+ . .+...+.+++|+ + ++++++++.|+.|++||+.+++.+..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-D---------------------SQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-S---------------------SSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-C---------------------CCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9988777766 4 566666666655 4 457999999999999999999999888765
Q ss_pred CC--CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 603 GG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 603 ~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.. ...+.++.|+ +++++++++.||.|++||+.++ +.+..+.+|...+..
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~--------------------------- 344 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA--------------------------- 344 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE---------------------------
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE---------------------------
Confidence 31 1346677775 8999999999999999999887 666666666554331
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
+.+ ++ +++++.|+.+++|++.. +. ..|...|.+++| +++..+++++.|+
T Consensus 345 --------------~~~-~~---l~~~~~dg~i~~w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 345 --------------LTV-NP---LISGSYDGRIMEWSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISWDD 393 (615)
T ss_dssp --------------EET-TT---TEEEETTSCEEETTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEETTT
T ss_pred --------------EEe-cC---cEEECCCCeEEEEEchh---------hc---CcccCceEEEEE-CCCcEEEEEeCCC
Confidence 222 33 89999999999999871 11 348899999999 6678899999999
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceee
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA 840 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~ 840 (1101)
.+++|++..... ...+.+++++|++.+++++.++.+.+|++.+++.+.
T Consensus 394 ~i~~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 394 TLKVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp EEEETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CEEEEEcccCcc--------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 999998743211 125788999999999998888999999999999988
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEec-cCeEEEEEeecceEe-eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
.+. +...+.+++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.|+.|++||+
T Consensus 442 ~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 442 SVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp EEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeC
Confidence 887 78899999998 679999999 999999999988766 778899999999999999999999999999999999
Q ss_pred CCcccccceeeecCCC-CCCCCCCCeEEEEcC----------CCcEEEE-EeCCeEEEEEcCCc-eeeeeccCCCCCCCe
Q 001318 919 DGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ----------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPI 985 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----------dg~~la~-~~d~~v~vwd~~~~-~~~~~~~~~~h~~~i 985 (1101)
.+++. +....+ |. ..|.+++|+| ++++|++ +.|+.|++||+.++ +.+..+. +|...|
T Consensus 518 ~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v 587 (615)
T 1pgu_A 518 QSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGV 587 (615)
T ss_dssp TTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCE
T ss_pred CCCcc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccce
Confidence 98653 333343 43 4899999999 9999999 57999999999998 6776665 889999
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
++++|+||++ |++++.||+|++|++.+
T Consensus 588 ~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 588 NNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-53 Score=530.52 Aligned_cols=634 Identities=10% Similarity=0.032 Sum_probs=435.3
Q ss_pred CCcccccCCcccccccccCCCCCC-----CcCcCCCCCCCCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEE
Q 001318 299 GISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 373 (1101)
Q Consensus 299 ~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iw 373 (1101)
||.+.| +.++|++++... ...+.+|... .......+.|...|++++|+| |+ +|++++.|++|+||
T Consensus 15 gh~~~V------~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 15 GMSSKP------IAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVL 84 (902)
T ss_dssp ECSSCE------EEEEEETTTTEEEEEETTSEEEEECST--TCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEE
T ss_pred CCCCCc------EEEEECCCCCEEEEEeCCCEEEEEeCC--CcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEE
Confidence 888888 999999987632 2234445433 334455567899999999999 88 59999999999999
Q ss_pred eCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeee--------
Q 001318 374 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-------- 445 (1101)
Q Consensus 374 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-------- 445 (1101)
|+.+++.+.. +. |.+.|++++|+|++++|++|+.||+|++||+.+++.....
T Consensus 85 d~~~~~~~~~-------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~ 144 (902)
T 2oaj_A 85 SLYSQKVLTT-------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSS 144 (902)
T ss_dssp ETTTCSEEEE-------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHH
T ss_pred ECCCCcEEEE-------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccc
Confidence 9999887653 32 6678999999999999999999999999999988653110
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc------------------ccCeEEEeeeec
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------------------EAPVYSVCPHHK 507 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------------------~~~v~~v~~~~~ 507 (1101)
..+.+|.+.|.+++|+|++.. .+++|+.|+.| +||+++++++..+.+| ...|++++|+
T Consensus 145 ~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-- 220 (902)
T 2oaj_A 145 FFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-- 220 (902)
T ss_dssp TCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC--
T ss_pred cccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc--
Confidence 235789999999999997543 68899999999 9999999999888766 5779999985
Q ss_pred CCccEEEEEecCCcEEEEecCCCCceee--ec---CCCCceeEEEEccCCceEEeccccCceeEEEEc----CCC-CEEE
Q 001318 508 ENIQFIFSTALDGKIKAWLYDNLGSRVD--YE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTK-NRFL 577 (1101)
Q Consensus 508 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~---~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~-~~l~ 577 (1101)
++|.+|++++.||+|++||+++++.... +. .+... . ..+.+. -.....+..++|+ |++ ..++
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~-~---~~~~~~----~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ-P---DYIRDS----STNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC-T---TCCCCC----SSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC-C---cCCCCC----ccccCCeeEEEEEecCCCCCCEEEE
Confidence 5578999999999999999988765442 11 11100 0 000000 0011234455553 332 3566
Q ss_pred EEeCC-----CcEEEEECC------------------CCceeEEEcCCCCCCCcCeEEEcc----------CCCEEEEEe
Q 001318 578 AAGDD-----FSIKFWDMD------------------SVQLLTSIDADGGLPASPRIRFNK----------DGCLLAVST 624 (1101)
Q Consensus 578 ~~~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~ 624 (1101)
+|+.| ..+.+|++. +.+....+.. .+...|.++.+.+ ++..+++++
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 66655 378899852 2233444432 1223577777755 345889999
Q ss_pred CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccce
Q 001318 625 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 704 (1101)
Q Consensus 625 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 704 (1101)
.||.|++|++.++.........+... . .. . +....+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l-~---------~~----------------------------~------~~v~~~ 407 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNL-S---------WL----------------------------R------PLATTS 407 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGG-T---------TB----------------------------T------TBEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcc-c---------cc----------------------------C------CCeeEE
Confidence 99999999997663222211111000 0 00 0 000000
Q ss_pred eeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecC
Q 001318 705 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 784 (1101)
Q Consensus 705 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 784 (1101)
.. .+...++|+.......... .+..+|...+.+++|+|+++.|++++.|++|++||+..+.....
T Consensus 408 ~~--s~~~~~~w~~~~~~~~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--------- 472 (902)
T 2oaj_A 408 MA--ASVPNKLWLGALSAAQNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--------- 472 (902)
T ss_dssp EE--EEEEHHHHHHHHHTTBCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------
T ss_pred EE--EEcCHHHHHHHHhcccCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------
Confidence 00 0112234443211100000 11245777888899999999999999999999999865421100
Q ss_pred ccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCc--------------------------
Q 001318 785 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-------------------------- 837 (1101)
Q Consensus 785 ~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-------------------------- 837 (1101)
.++... +.. ..+.+|...|.+++|+||+++||+|+ ||+|+|||+.+++
T Consensus 473 ~~~~~~----l~~-~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (902)
T 2oaj_A 473 ASFEVN----LSR-TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN 547 (902)
T ss_dssp BCEEEE----HHH-HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS
T ss_pred ceEEee----chh-hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc
Confidence 000000 000 00124889999999999999999999 9999999998652
Q ss_pred -------------------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-----eec-CcccCe
Q 001318 838 -------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRI 892 (1101)
Q Consensus 838 -------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V 892 (1101)
++.++.+|.+.|++++||| || +||+|+.|++|+|||+.+...+. .+. +|.+.|
T Consensus 548 ~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V 625 (902)
T 2oaj_A 548 GVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV 625 (902)
T ss_dssp CSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred cccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence 3677889999999999999 88 99999999999999998876653 343 899999
Q ss_pred eEEEEc-----CCC---CEEEEEeCCCceEEEeC---CCcccccceeeecCCCCCC--CCCCCeEEE-Ec----------
Q 001318 893 TGLAFS-----HAL---NVLVSSGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH---------- 948 (1101)
Q Consensus 893 ~~l~~s-----~dg---~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s---------- 948 (1101)
++|+|+ ||| ++|++++.|++|++||+ .+|+. ...+.++.. ..+.|..++ |+
T Consensus 626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLAT 700 (902)
T ss_dssp EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCB
T ss_pred EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCC
Confidence 999999 886 89999999999999999 55542 222222210 013556665 65
Q ss_pred ------------CCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEE---E------EcCCCCEEEEEEcCCeEE
Q 001318 949 ------------QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 949 ------------~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l---~------~spdg~~l~s~s~dg~v~ 1007 (1101)
++|..|+++ +..+++|++.++++.+... +|...+.++ . |++++..|++++.||+|+
T Consensus 701 ~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~ 777 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLR 777 (902)
T ss_dssp HHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEE
T ss_pred HHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEE
Confidence 555555544 8899999999999987764 455566665 5 788999999999999999
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d 1056 (1101)
+|++.+++.+..+......-. -......|++ .|++++-.+..
T Consensus 778 ~~s~p~l~~~~~~~~~~~~~~------~~~~~~~~~~-~G~~~~~~~~~ 819 (902)
T 2oaj_A 778 VFTIPDFKEQMSEHIPFPIAA------KYITESSVLR-NGDIAIRVSEF 819 (902)
T ss_dssp EEETTTCCEEEEEECSSCCCH------HHHTTCEECT-TSCEEEECSSS
T ss_pred EEECcchHHHhhccCCccccc------ccccceEEcC-CCCEEEEeChh
Confidence 999999999988773221110 0111456766 56766655433
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-46 Score=469.03 Aligned_cols=466 Identities=17% Similarity=0.215 Sum_probs=374.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|.+.|++++|||+|++ ||+|+.||.|+|||+.+++.+.. +.+|.+.|++++|+|+|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred eecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCC
Confidence 4469999999999999995 99999999999999999887763 678999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 499 (1101)
+|++|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|...|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence 99999999999999999988665 5778999999999999999 7999999999999999987 6778889999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC--CCCEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFL 577 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 577 (1101)
.+++|++. ++..+++++.||.|++||+........+..+. ...+..++|+| ++.+++
T Consensus 144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEE
Confidence 99999651 45799999999999999998766655444332 22444555555 667899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
+++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.||.|++||+.++ .....+.
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~------------ 267 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN------------ 267 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC------------
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee------------
Confidence 999999999999999999998886644 7999999999999999999999999998776 2222211
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
.+
T Consensus 268 ------------------------------------------------------------------------------~~ 269 (814)
T 3mkq_A 268 ------------------------------------------------------------------------------VG 269 (814)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------cC
Confidence 14
Q ss_pred ccceEEEEEcCCCceE-EeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 738 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
...+.+++|+|++..+ ++++.++.+.+|++. .....+.++|+
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~ 312 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPV 312 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSS
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCC
Confidence 5678999999998753 666667778888752 12335778889
Q ss_pred CCEEEEEe-CC---eEE------EEECCCCcee----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 817 DSYVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 817 g~~la~~s-dg---~i~------vwd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
|+.+++++ +. .+. .|++..+... ..+..+...+.+++|+| ++++|++++ ||.+.+|++.....
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~- 389 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN- 389 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc-
Confidence 98888876 32 122 2333333322 33455677899999999 999999988 89999999765432
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC---cEEEE-Ee
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VH 958 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~la~-~~ 958 (1101)
.+.+.|.+++|+|||++|++++.|++|++|+.-.+ +. ..+..++|+|+| .+|++ +.
T Consensus 390 ----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~ 449 (814)
T 3mkq_A 390 ----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKS 449 (814)
T ss_dssp ----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEE
T ss_pred ----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-------------cc---ceEEcCCcCccceecceEEEEec
Confidence 24567899999999999999999999999964321 11 256788999998 45555 79
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEE------EcCCeEEEEE
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVFS 1010 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~------s~dg~v~vwd 1010 (1101)
|+.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|.
T Consensus 450 d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 450 DGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 9999999999999988876 3333 99999999999999 6665555543
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.5e-44 Score=452.54 Aligned_cols=467 Identities=16% Similarity=0.208 Sum_probs=374.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|||||++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478999999999999999999999999999999999987665 5778999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
|+.+++.+..+.+|.+.|.+++|+ +++.+|++++.||.|++||+.+. .....+..|...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 999999999999999999999985 45679999999999999999876 344455556665665555551
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--CCCEEEEEeCCCcEEEEEecCcc
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.+|++++.||.|++||+.++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 34579999999999999999988887776543 24689999999 9999999999999999998766
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
.....+.
T Consensus 219 ~~~~~~~------------------------------------------------------------------------- 225 (814)
T 3mkq_A 219 SCVATLE------------------------------------------------------------------------- 225 (814)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 2222221
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 2567899999999999999999999999998742 221111
Q ss_pred cCCCCCCCCeeEEEEecCCC--EEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe---EE-
Q 001318 799 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ- 872 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~--~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~- 872 (1101)
+. .+...+.+++|+|++. +++++.++.+.+|++.... ..++++| +++++++++.+.. +.
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2677899999999998 5777779999999976532 3467788 8888988776552 11
Q ss_pred -----EEEeecceEe----eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 873 -----IYNVRVDEVK----SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 873 -----vwd~~~~~~~----~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.|++..+... ..+..|...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence 1233333222 33456777899999999999999998 8999999986533211 13678
Q ss_pred EEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeee
Q 001318 944 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 944 ~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
+++|+|+|++++++ .++.|++|+.. .+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999995 78999999632 2567789999999999 6889999999999999999999988
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE------ecCCcEEEEe
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1063 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~------~~dg~v~vW~ 1063 (1101)
+. +| .. .+.|+| |+++|+++ +.++.+.+|.
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 77 21 11 699999 78999999 6666555554
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-40 Score=374.66 Aligned_cols=306 Identities=16% Similarity=0.313 Sum_probs=262.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++++ +++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~~-l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 5579999999999999994 9999999999999999988765 3789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+|++|+.|++|++||+.+++++. ++.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999987665 6889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
++++ .+++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus 239 ~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 9987 4567899999999999999999998888999999999999999986521111110 111122334578999999
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
.|+.|++||+.+++++..+.+|.. .|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~---------------- 376 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL---------------- 376 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE----------------
T ss_pred CCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE----------------
Confidence 999999999999999999986644 7999999999999999999999999998766 332222
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
.+|...
T Consensus 377 --------------------------------------------------------------------------~~h~~~ 382 (410)
T 1vyh_C 377 --------------------------------------------------------------------------NAHEHF 382 (410)
T ss_dssp --------------------------------------------------------------------------ECCSSC
T ss_pred --------------------------------------------------------------------------cCCCCc
Confidence 126778
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeec
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKW 767 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~ 767 (1101)
|.+++|+|++.+|++++.|+.|++|++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999985
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-39 Score=371.37 Aligned_cols=306 Identities=17% Similarity=0.313 Sum_probs=260.1
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEe
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 526 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd 526 (1101)
.+.+|.++|++++|+|++. +|++|+.|++|+|||+.+++.+.++.+|.+.|.+++|+ +++.+|++|+.|++|++||
T Consensus 103 ~l~gh~~~V~~~~~~p~~~--~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred eecccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence 4779999999999999999 89999999999999999999999999999999999985 5568999999999999999
Q ss_pred cCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCC
Q 001318 527 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 606 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 606 (1101)
+.+.+....+..|...|.+++|+|++ +++++++.|++|++||+.++.++..+..|..
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---------------------~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-- 235 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-- 235 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---------------------CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--
Confidence 99887777777777666666665554 5799999999999999999999999986644
Q ss_pred CcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccccc
Q 001318 607 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 686 (1101)
Q Consensus 607 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1101)
.|.++.|+|++++|++++.|+.|++||+.++ .....+
T Consensus 236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~------------------------------------------ 272 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL------------------------------------------ 272 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------------------------------------------
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEe------------------------------------------
Confidence 7999999999999999999999999998776 222222
Q ss_pred ccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 687 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 687 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
.+|...|.+++|+|++.........+
T Consensus 273 ------------------------------------------------~~h~~~v~~~~~~~~~~~~~~~~~~~------ 298 (410)
T 1vyh_C 273 ------------------------------------------------REHRHVVECISWAPESSYSSISEATG------ 298 (410)
T ss_dssp ------------------------------------------------CCCSSCEEEEEECCSCGGGGGGGCCS------
T ss_pred ------------------------------------------------cCCCceEEEEEEcCcccccchhhhcc------
Confidence 12667888999998875321110000
Q ss_pred ccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC
Q 001318 767 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 845 (1101)
........++.+|++|+ |+.|++||+.++.++.++.+|
T Consensus 299 -----------------------------------------~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 299 -----------------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp -----------------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -----------------------------------------ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence 01112234678999999 999999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.|++|++|++
T Consensus 338 ~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 338 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999986
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-38 Score=355.83 Aligned_cols=290 Identities=19% Similarity=0.310 Sum_probs=251.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+.+|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+.. +..|...|.+++|+|+|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSG 109 (340)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTTS
T ss_pred eecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCCC
Confidence 34569999999999999995 99999999999999999887663 67889999999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|.+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9999999999999999987642 233446789999999999998875 889999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|+ +++.++++|+.|++|++||++++.....+..|...|.+++|+|++ ++|++
T Consensus 187 v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l~s 243 (340)
T 1got_B 187 VMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NAFAT 243 (340)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---------------------SEEEE
T ss_pred eEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---------------------CEEEE
Confidence 9999985 456899999999999999999888777777777666666655554 58999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCC
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 658 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1101)
++.||.|++||+++++.+..+........|.+++|+|+|++|++|+.||.|++||+.++ .....+
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~-------------- 308 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-------------- 308 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence 99999999999999998888875555557899999999999999999999999998766 222221
Q ss_pred CCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccc
Q 001318 659 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.+|.
T Consensus 309 ----------------------------------------------------------------------------~~h~ 312 (340)
T 1got_B 309 ----------------------------------------------------------------------------AGHD 312 (340)
T ss_dssp ----------------------------------------------------------------------------ECCS
T ss_pred ----------------------------------------------------------------------------ecCC
Confidence 1277
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeee
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
..|.+++|+|+|..|++++.|+.|++||
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 8899999999999999999999999996
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=350.96 Aligned_cols=287 Identities=21% Similarity=0.325 Sum_probs=247.0
Q ss_pred eeccccCCeeEEEEcCC----CCeEEEEEecCCCcEEEEeCCCCce--EEEecCcccCeEEEeeeecCCccEEEEEecCC
Q 001318 447 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 520 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d----~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg 520 (1101)
.+.+|.+.|++++|+++ +. +|+||+.|++|+|||+.+++. ...+.+|...|.+++|+ +++.++++++.|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDA 102 (321)
T ss_dssp ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTS
T ss_pred ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCC
Confidence 46799999999999985 45 799999999999999987764 45789999999999985 5557999999999
Q ss_pred cEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 521 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 521 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
+|++||+.+++....+..+...+.++ +|+|++++|++++.||.|++|++.+++....+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~---------------------~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTL---------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCE---------------------EECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEE---------------------EECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 99999999877766666555544444 455555689999999999999999999888887
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 680 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1101)
.+.. .+.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 162 ~~~~--~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~----------------------------------- 203 (321)
T 3ow8_A 162 TRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLE----------------------------------- 203 (321)
T ss_dssp CSSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------------------------------
T ss_pred CCCc--eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc-----------------------------------
Confidence 6544 6899999999999999999999999998765 2111110
Q ss_pred ccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCc
Q 001318 681 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 760 (1101)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 760 (1101)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee
Q 001318 761 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 839 (1101)
Q Consensus 761 ~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 839 (1101)
+|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus 204 ------------------------------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 204 ------------------------------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp ------------------------------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred ------------------------------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence 1566788899999999999998 899999999999999
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.++.+|...|.+++|+| ++++|++|+.||+|+|||+.+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999963
No 17
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-38 Score=356.91 Aligned_cols=293 Identities=17% Similarity=0.274 Sum_probs=253.3
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+.+|.+.|+|++|+|++++ |++|+.||+|+|||..+++.... +..|...|.+++|+|+|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPSG 118 (354)
T ss_dssp EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTTS
T ss_pred EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCCC
Confidence 35579999999999999995 99999999999999998877653 56788899999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCce---eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++||+++++.+..+.+|.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence 9999999999999999875421 122335678999999999999999 79999999999999999999999999999
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..|.+++|++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|++ ++|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l 255 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DAF 255 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CEE
Confidence 99999999887778899999999999999999988877777777766666665555 579
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
++++.|++|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++ ..+..+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------ 322 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------ 322 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence 9999999999999999988887775555456889999999999999999999999998776 222211
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
.+
T Consensus 323 ------------------------------------------------------------------------------~~ 324 (354)
T 2pbi_B 323 ------------------------------------------------------------------------------FG 324 (354)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------EC
Confidence 12
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeee
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWK 766 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 766 (1101)
|...|.+++|+|+|++|++++.|+.|++|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 778899999999999999999999999995
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-38 Score=368.21 Aligned_cols=340 Identities=15% Similarity=0.205 Sum_probs=275.2
Q ss_pred ccCCCCCeEEEEEecCCC-eEEEEEcCCeEEEEEc----cCCce------eeee-eeec------cccCCeeEEEEcCCC
Q 001318 403 VKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPN 464 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~~~~s~d~ 464 (1101)
...|.+.|++++|+|+|+ +||+|+.|+.|++||+ .+++. .... ..+. +|.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345678999999999999 9999999999999999 88772 2211 1122 268899999999999
Q ss_pred CeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCc--
Q 001318 465 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-- 542 (1101)
Q Consensus 465 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-- 542 (1101)
+ +|++++.|+.|++|| .+++.+..+.+|...|.+++|+ +++.+|++++.||.|++||+.+++....+..+...
T Consensus 121 ~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 121 N--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp S--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred C--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 9 899999999999999 7888999999999999999985 45689999999999999999988777776665543
Q ss_pred -eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE
Q 001318 543 -CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 621 (1101)
Q Consensus 543 -v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 621 (1101)
+....+.+++. .+..+.|+++ ..+++++.+|.|++||+.+++.+..+..+. ..|.+++|+|++++|+
T Consensus 196 ~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 196 SINAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLL 263 (425)
T ss_dssp ----------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEE
T ss_pred ceeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEE
Confidence 11111111111 2555666665 358899999999999999999988887554 4799999999999999
Q ss_pred EEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 701 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1101)
+++.||.|++||+.++ +....+
T Consensus 264 ~~~~d~~i~i~d~~~~-~~~~~~--------------------------------------------------------- 285 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG-NSQNCF--------------------------------------------------------- 285 (425)
T ss_dssp EEETTSCEEEECSSSB-SCSEEE---------------------------------------------------------
T ss_pred EEcCCCEEEEEECCCC-ccceEe---------------------------------------------------------
Confidence 9999999999997654 111000
Q ss_pred cceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeee
Q 001318 702 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 702 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc
Q 001318 782 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 860 (1101)
..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus 286 --------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 343 (425)
T 1r5m_A 286 --------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQ 343 (425)
T ss_dssp --------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSS
T ss_pred --------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCC
Confidence 0156678888899988 778877 89999999999999999999999999999999 899
Q ss_pred EEEEEeccCeEEEEEeecce--------------------EeeeecCccc--CeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 861 IIAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.|+.|++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999999999988 8899999977 9999999999999999999999999998
Q ss_pred C
Q 001318 919 D 919 (1101)
Q Consensus 919 ~ 919 (1101)
+
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 6
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=349.24 Aligned_cols=287 Identities=18% Similarity=0.289 Sum_probs=247.5
Q ss_pred ccCCCCCeEEEEEecC----CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 403 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6789999999999984 67999999999999999987653 23346889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++||+.+++.+..+..|...+.+++|+ +++++|++++.||.|++||+.+.+....+..+...+.+++|+|
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-------- 174 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-------- 174 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT--------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC--------
Confidence 999999999999999999999999985 5668999999999999999998877766666655555555554
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
++++|++++.||.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.++
T Consensus 175 -------------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~- 238 (321)
T 3ow8_A 175 -------------DGKYLASGAIDGIINIFDIATGKLLHTLEGHA--MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA- 238 (321)
T ss_dssp -------------TSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCCCEEEECTTSCEEEEECTTSCEEEEETTTC-
T ss_pred -------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcccC--CceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-
Confidence 55689999999999999999999999988654 47999999999999999999999999997654
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
.....+
T Consensus 239 ~~~~~~-------------------------------------------------------------------------- 244 (321)
T 3ow8_A 239 NLAGTL-------------------------------------------------------------------------- 244 (321)
T ss_dssp CEEEEE--------------------------------------------------------------------------
T ss_pred ceeEEE--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 245 -------------------------------------------------------------------------------- 244 (321)
T 3ow8_A 245 -------------------------------------------------------------------------------- 244 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
.+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus 245 ---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 245 ---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred ---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 01677788999999999999998 89999999999999999999999999999999 8999999999999999996
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.3e-38 Score=348.99 Aligned_cols=287 Identities=14% Similarity=0.264 Sum_probs=243.0
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...++.+|.+.|++++|+|+++ +|++|+.|++|+|||+.+++.+..+..|...|.+++|+ +++.+|++|+.|+.|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA--PSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC--TTSSEEEEEETTCEEE
T ss_pred hheeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC--CCCCEEEEEeCCCeEE
Confidence 3446889999999999999999 89999999999999999999999999999999999985 5668999999999999
Q ss_pred EEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 001318 524 AWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 599 (1101)
Q Consensus 524 ~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 599 (1101)
+|++.+... ...+..|...+.++.|++++ .+++++.|+.|++||+.+++.+..+
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------~l~s~s~d~~i~~wd~~~~~~~~~~ 180 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----------------------QIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC----------------------cEEEEECCCcEEEEECCCCcEEEEE
Confidence 999987542 22344555555555554443 3899999999999999999999998
Q ss_pred cCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 600 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 600 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
..|. ..|.+++|+|+++++++|+.|+.|++||+.++ .....+
T Consensus 181 ~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~----------------------------------- 222 (340)
T 1got_B 181 TGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTF----------------------------------- 222 (340)
T ss_dssp CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE-----------------------------------
T ss_pred cCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEE-----------------------------------
Confidence 8664 47999999999999999999999999998655 111100
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T 1got_B 223 -------------------------------------------------------------------------------- 222 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
.+|...|.+++|+|++++|++++ |++|++||+.+++.
T Consensus 223 ------------------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 223 ------------------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp ------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ------------------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 01566678888888888888888 78888888888777
Q ss_pred eeEecC--CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEE
Q 001318 839 MATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 916 (1101)
Q Consensus 839 ~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iw 916 (1101)
+..+.. +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+|++.|++|+||
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 766653 234799999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 001318 917 S 917 (1101)
Q Consensus 917 d 917 (1101)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-37 Score=343.41 Aligned_cols=300 Identities=19% Similarity=0.263 Sum_probs=245.1
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++..+|++|+.|++|++||+.+.......++ ..+.+|...|.+++|+|||+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECTTSS
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECCCCC
Confidence 3469999999999998754799999999999999875433221111 14789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeE
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 500 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 500 (1101)
+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999998665 5789999999999999999 89999999999999985 667888999999999
Q ss_pred EEeeeecC----CccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 501 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 501 ~v~~~~~~----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
+++|.+.. ++.++++++.|+.|++||+.+......+..|...|.+++|+|++ ++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---------------------~~l 211 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---------------------TLI 211 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---------------------SEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---------------------CEE
Confidence 99987643 45589999999999999999877776777776666666655555 589
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
++++.||.|++||+.+++.+..+..+. .|.+++|+|++.+|++++. +.+++|++..+ .....+..+...
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~-~~~~~~~~~~~~------ 280 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQ-YLVDDLRPEFAG------ 280 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEET-TEEEEEEETTE-EEEEEECCCCTT------
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcC-eeeeccCccccc------
Confidence 999999999999999999998887543 5999999999999998876 45999998765 222222110000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
....
T Consensus 281 ----------------------------------------------------------------------------~~~~ 284 (319)
T 3frx_A 281 ----------------------------------------------------------------------------YSKA 284 (319)
T ss_dssp ----------------------------------------------------------------------------CCGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 0012
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeecc
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
+...+.+++|+|+|++|++++.|+.|++|++.
T Consensus 285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp GCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 56678999999999999999999999999974
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-38 Score=357.29 Aligned_cols=322 Identities=14% Similarity=0.174 Sum_probs=232.6
Q ss_pred EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc-
Q 001318 349 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 427 (1101)
Q Consensus 349 ~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 427 (1101)
..+.+.+++. ++.++.+.....|++... ...+|...|++++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEcCC
Confidence 3444555554 344444577788887543 24579999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE----EecCccc
Q 001318 428 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 497 (1101)
Q Consensus 428 -----d~~i~iwd~~~~~~~~~-~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~ 497 (1101)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.|++|+|||+.+++.+. ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 78899999887654321 123457899999999999986 5678889999999999887543 3458999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|++++|+ +++++|++++.|++|++||+.+++....+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 99999985 5668999999999999999999888888888888888888887765 4688
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccC-CCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+++.|+.|++||+++++.+..+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+.
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~----------- 266 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA----------- 266 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence 999999999999999988877766666667899999996 578999999999999998765 2111110
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+|...|.+++|+|+
T Consensus 267 ------------------------------------------------------------------~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 267 ------------------------------------------------------------------VHSQNITGLAYSYH 280 (357)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence 15566777888877
Q ss_pred C-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 817 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 817 g-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+ ++|++++ |++|+|||+.++++++.+ +|...|++++|+|.++++||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 4678887 899999999988877655 699999999999877899999999999999999764
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-38 Score=353.81 Aligned_cols=319 Identities=15% Similarity=0.205 Sum_probs=231.4
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.|. +++||.
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence 344555567778888763211 23889999999999999999999853 244542
Q ss_pred cCccccCCCccccccc-cCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceee----EecCCCCCeEEEEEecC
Q 001318 783 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ 857 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~-~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp~ 857 (1101)
.+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 2334444444322111 111237888999999999987766669999999998876543 3457899999999999
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++....... ..+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~---~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF---CAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC---TTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee---ccc-
Confidence 999999999999999999999999999999999999999999875 789999999999999988654322111 111
Q ss_pred CCCCCCeEEEEcCCC-cEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC-CEEEEEEcCCeEEEEEcCC
Q 001318 937 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg-~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~s~s~dg~v~vwd~~~ 1013 (1101)
...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.|++|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1468999999985 56777 588999999999999888776 789999999999998 5799999999999999999
Q ss_pred ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1014 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++++..+. |.. .|. +++|+|.|+.+|++++.||+|++|++.+..
T Consensus 302 ~~~~~~~~--------H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS--------HRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC--------CSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC--------CCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98876542 323 366 899999888999999999999999997654
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=349.72 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=230.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc-ccccccCCCCCCCCeeEEEEec
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
+...|.+++|+|||++|++++ |+.+++||... .+|+..... ..........+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 77889997521 111111100 0000000112567899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeE----ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCccc
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
++ .+++|+ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 96 556666 99999999998876554 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEc
Q 001318 891 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 891 ~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~ 967 (1101)
.|++++|++++ .+|++++.|++|++||+.+++....... ..+ ...+.+++|+|+ ++++++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---cee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999998 4789999999999999998664221111 111 135789999995 567777 57899999999
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCC-CEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.+++++..+. +|...|++++|+||| ++|++|+.|++|+|||+.+++++. +. +|... |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999988876 889999999999998 579999999999999999998763 22 44333 66 89999966
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
..+|++++.||+|++|++.+..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999997754
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-37 Score=338.69 Aligned_cols=250 Identities=22% Similarity=0.348 Sum_probs=215.9
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+.. +..|...|.+++|+|+++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN 68 (304)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred ecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence 3359999999999999995 99999999999999999887653 678999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 499 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 499 (1101)
+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|...|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence 99999999999999999998665 5789999999999999999 7999999999999999987 4557889999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC-CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+. +++.++++
T Consensus 144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s 203 (304)
T 2ynn_A 144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT 203 (304)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence 99999653 457999999999999999987665544432 2233444443331 25578999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|+.|++||+++++++..+.+|.. .|.+++|+|++++|++++.||+|++||..++
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999987654 7999999999999999999999999998876
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-37 Score=345.84 Aligned_cols=208 Identities=16% Similarity=0.235 Sum_probs=173.7
Q ss_pred cccCCCC-CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.+.+|.. .|++++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4778987 999999999999999999999999999998865444334578999999999999999 8999999999999
Q ss_pred EeCCCC--ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce---eeecCCCCceeEEEEccCCceE
Q 001318 481 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 481 wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
||+.++ +++..+.+|...|.+++|+ +++++|++++.|++|++||++..... ..+..|...
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~------------- 152 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD------------- 152 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------
Confidence 998877 4578899999999999985 46689999999999999999875432 233444444
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
+..++|+|++++|++++.|+.|++||..+++.. ..+.+| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 153 --------v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 153 --------VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp --------EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred --------eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 445555556668999999999999999887644 455544 45799999999999999999999999999
Q ss_pred ecC
Q 001318 634 TSD 636 (1101)
Q Consensus 634 ~~~ 636 (1101)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-39 Score=370.51 Aligned_cols=332 Identities=13% Similarity=0.179 Sum_probs=269.9
Q ss_pred CCeEEEEEecCCC-eEEEE----------EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 408 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 408 ~~V~~l~~spdg~-~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
..|.+++|+|+|+ +|++| +.|+.|+|||+.+++....... ..|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccCC
Confidence 4688999999997 99999 8899999999998764322222 35889999999999999 799999999
Q ss_pred cEEEEeCCC----CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC------ceeee---cCCCCce
Q 001318 477 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 543 (1101)
Q Consensus 477 ~i~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~---~~~~~~v 543 (1101)
.|++||+.+ .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+.. ....+ ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999988 4588899999999999999654 25799999999999999998876 22222 3344445
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----CCCcCeEEEccCC-C
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 618 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~ 618 (1101)
.+++|+|++ +.++++++.|+.|++||+++++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555554442 46899999999999999999999988876531 4579999999987 6
Q ss_pred EEEEEeCCC---cEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcc
Q 001318 619 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 695 (1101)
Q Consensus 619 ~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1101)
++++++.|+ .|++||+.++......+
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------- 257 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------- 257 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence 999999998 99999986641111100
Q ss_pred ccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC
Q 001318 696 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 775 (1101)
Q Consensus 696 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 775 (1101)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEE
Q 001318 776 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 853 (1101)
Q Consensus 776 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 853 (1101)
. .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+.+|...|.+++
T Consensus 258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 0 01566788888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEeccCeEEEEEeecceEeeeec-----------------------------------CcccCeeEEEE
Q 001318 854 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 897 (1101)
Q Consensus 854 ~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 897 (1101)
|+| ++ ++|++++.||.|+|||+.+++...... .|..++.+++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765433221 16778889999
Q ss_pred cCCCCEEEEEeCCCceEEEeCCC
Q 001318 898 SHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 898 s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.2e-37 Score=337.37 Aligned_cols=214 Identities=19% Similarity=0.294 Sum_probs=184.1
Q ss_pred cccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCce--eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 488999999999999965 8999999999999999875322 223456889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 999999999999999999999999985 5568999999999999999974 56667778888888888887654
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++..+++++.|+.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 23345689999999999999999999888887654 47999999999999999999999999998765
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.2e-37 Score=336.86 Aligned_cols=289 Identities=19% Similarity=0.268 Sum_probs=245.0
Q ss_pred eeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEE
Q 001318 446 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 525 (1101)
Q Consensus 446 ~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~w 525 (1101)
.++.+|.+.|.+++|+|+++ +|++++.|++|++||+.++..+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence 36889999999999999999 899999999999999999999999999999999999864 55799999999999999
Q ss_pred ecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEcCCCC
Q 001318 526 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGG 604 (1101)
Q Consensus 526 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~ 604 (1101)
|+.+++....+..|...|.+++|+|++ +++++++.|++|++||++++ .....+..|.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~- 140 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHE- 140 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS---------------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCC---------------------CEEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence 999988888888877777766666655 57999999999999999887 4455666554
Q ss_pred CCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccc
Q 001318 605 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 683 (1101)
Q Consensus 605 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1101)
..|.+++|+| ++.+|++|+.|++|++||+.++..... +.
T Consensus 141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~-~~-------------------------------------- 180 (304)
T 2ynn_A 141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LT-------------------------------------- 180 (304)
T ss_dssp -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE-EE--------------------------------------
T ss_pred -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce-ec--------------------------------------
Confidence 4799999999 689999999999999999765411000 00
Q ss_pred cccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEE
Q 001318 684 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 763 (1101)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 763 (1101)
T Consensus 181 -------------------------------------------------------------------------------- 180 (304)
T 2ynn_A 181 -------------------------------------------------------------------------------- 180 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec--CCCEEEEEe-CCeEEEEECCCCceee
Q 001318 764 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 764 iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~ 840 (1101)
.++...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 00334455566654 677899998 8999999999999999
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCC--EEEEEeCCCceEEEeC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 918 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~--~l~s~s~D~~v~iwd~ 918 (1101)
++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+++++|+|++. ++++++.|+ +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 577777665 888887
Q ss_pred CC
Q 001318 919 DG 920 (1101)
Q Consensus 919 ~~ 920 (1101)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.9e-38 Score=357.06 Aligned_cols=306 Identities=17% Similarity=0.279 Sum_probs=247.8
Q ss_pred EEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCc
Q 001318 431 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 431 i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
+..|+.....+. .++.+|.+.|++++|+|+++ +|++|+.|++|+|||+.+++.+..+.+|...|.+++|+ +++
T Consensus 48 ~~~~~~~~~~~~---~~l~gH~~~V~~~~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s--~~g 120 (380)
T 3iz6_a 48 AVSFNPTDLVCC---RTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA--PNG 120 (380)
T ss_dssp CCCCCCCCCEEE---EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEEC--TTS
T ss_pred ccccccceeEEe---ecccccccEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEEC--CCC
Confidence 445555554433 36899999999999999999 79999999999999999999999999999999999985 567
Q ss_pred cEEEEEecCCcEEEEecCCCC-------ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC
Q 001318 511 QFIFSTALDGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 583 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 583 (1101)
++|++|+.|+.+++||+.... ....+.+|...+.++.|.|++. ..|++++.|+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--------------------~~l~s~s~D~ 180 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--------------------TRLITGSGDQ 180 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS--------------------SCEEEECTTS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC--------------------CEEEEECCCC
Confidence 899999999999999997532 1223455555555555555432 4699999999
Q ss_pred cEEEEECCCCceeEEEcC---CCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 584 SIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 584 ~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+|++||+.+++.+..+.. .++...|.+++|++ ++++|++|+.|++|++||+......+..+
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------- 245 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------- 245 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---------------
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---------------
Confidence 999999999998887732 23455789999987 89999999999999999976331111100
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
.+|...|.+++|+|++++
T Consensus 246 --------------------------------------------------------------~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 246 --------------------------------------------------------------HGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp --------------------------------------------------------------CCCSSCCCEEEECTTSSE
T ss_pred --------------------------------------------------------------CCcCCCeEEEEEecCCCe
Confidence 016667778888888888
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCC-------CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee----cC
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KG 887 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l----~~ 887 (1101)
|++++ |++|++||+.+++.+..+..+. ..|++++|+| ++++|++|+.||.|++||+.+++.+..+ .+
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 342 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCC
Confidence 88887 7888888888887777765442 2489999999 9999999999999999999988877766 68
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 888 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
|.+.|++++|+|||++|+||+.|++|++|++...
T Consensus 343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999999999874
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.3e-38 Score=354.79 Aligned_cols=300 Identities=18% Similarity=0.297 Sum_probs=248.5
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.... +..|...|.+++|+|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAPN 119 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECTT
T ss_pred ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECCC
Confidence 334569999999999999996 99999999999999999887663 7789999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999999999976421 1122357899999999999998654 6999999999999999999999887
Q ss_pred ---cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 493 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 493 ---~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|++
T Consensus 199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~---------------- 261 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG---------------- 261 (380)
T ss_dssp CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS----------------
T ss_pred ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC----------------
Confidence 67999999999854 3568999999999999999984 35555666666666655555554
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-----CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 643 (1101)
++|++++.||+|++||+++++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||..++ +....
T Consensus 262 -----~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~ 335 (380)
T 3iz6_a 262 -----QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLN 335 (380)
T ss_dssp -----SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEE
T ss_pred -----CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEE
Confidence 5899999999999999999999888865432 234889999999999999999999999998766 22211
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCC
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 723 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 723 (1101)
+..
T Consensus 336 ~~~----------------------------------------------------------------------------- 338 (380)
T 3iz6_a 336 LGT----------------------------------------------------------------------------- 338 (380)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 100
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecc
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 768 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 768 (1101)
...+|...|.+++|+|+|..|++++.|+.|++|++.
T Consensus 339 ---------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 339 ---------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ---------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ---------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 002377899999999999999999999999999974
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=356.39 Aligned_cols=359 Identities=11% Similarity=0.147 Sum_probs=268.9
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeC----CCcce------eEeeeeeeeecCCCCcccccccccCCCC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ....... ........+|.+
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 109 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTN 109 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CB
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCC
Confidence 3344577999999999999934999999999999999 88773 2210000 000001234788
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.|++++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence 999999999999999999999999999 4454444 5778999999999999999 799999999999999999999
Q ss_pred EEEecCcccC---------------eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc
Q 001318 489 QYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 553 (1101)
Q Consensus 489 ~~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 553 (1101)
+..+..+... +.+++|++. ..+++++.||.|++||+.+......+..+...+.+++|+|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 259 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN- 259 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-
Confidence 9999888777 888888654 469999999999999999887777776666666655555544
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
++|++++.|+.|++||+.+++.+..+..+. ..+.+++|+|++ ++++++.|+.|++||
T Consensus 260 --------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d 316 (425)
T 1r5m_A 260 --------------------KLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWS 316 (425)
T ss_dssp --------------------TEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred --------------------CEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence 579999999999999999999998887554 479999999999 999999999999999
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.++ ..+..+.
T Consensus 317 ~~~~-~~~~~~~-------------------------------------------------------------------- 327 (425)
T 1r5m_A 317 LKQN-TLLALSI-------------------------------------------------------------------- 327 (425)
T ss_dssp TTTT-EEEEEEE--------------------------------------------------------------------
T ss_pred CCCC-cEeEecc--------------------------------------------------------------------
Confidence 8766 2222111
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
.|...|.+++|+|++++|++++.||.|++|++.....
T Consensus 328 ----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~--------------------- 364 (425)
T 1r5m_A 328 ----------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS--------------------- 364 (425)
T ss_dssp ----------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------
T ss_pred ----------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc---------------------
Confidence 1456778888888888888888888888888632110
Q ss_pred ccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEEEEEeccCeE
Q 001318 794 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 794 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.. .. +....++. +.......+..+.+|.. .|++++|+| ++++|++|+.||.|
T Consensus 365 -~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 365 -KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG 418 (425)
T ss_dssp ---------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred -ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence 00 00 00001222 22223457788888866 999999999 89999999999999
Q ss_pred EEEEee
Q 001318 872 QIYNVR 877 (1101)
Q Consensus 872 ~vwd~~ 877 (1101)
++||+.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999985
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=346.59 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=231.3
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
...|...|.+++|||||++|++++ |+++++||.... ...........|...|.+++|+|++. |++|+.
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~ 101 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASD 101 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEET
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEEC
Confidence 345778899999999999999887 777888863210 00000111234667899999999864 889999
Q ss_pred CCcEEEEeCCCCceEEE----ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEcc
Q 001318 475 DKTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 550 (1101)
Q Consensus 475 d~~i~iwd~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 550 (1101)
||+|+|||+.+++.+.. +.+|.+.|++++|+ +++++|++|+.|++|++||+.+++....+..|...|.+++|++
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 99999999999886544 45899999999985 5678999999999999999999988888888988888888888
Q ss_pred CCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcE
Q 001318 551 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGI 629 (1101)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 629 (1101)
++. ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|
T Consensus 180 ~~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 180 HKD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp SCT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred CCC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 775 468999999999999999999988887655555688999999 56789999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
++||+.++ +.+..+.
T Consensus 240 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 254 (344)
T 4gqb_B 240 SLVDTKST-SCVLSSA---------------------------------------------------------------- 254 (344)
T ss_dssp EEEESCC---CCEEEE----------------------------------------------------------------
T ss_pred EEEECCCC-cEEEEEc----------------------------------------------------------------
Confidence 99998765 2211110
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccC
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 789 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~ 789 (1101)
T Consensus 255 -------------------------------------------------------------------------------- 254 (344)
T 4gqb_B 255 -------------------------------------------------------------------------------- 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCeeEEEEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 790 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 790 ~~g~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
+|...|.+++|+|++ ++|++|+ |++|+|||+.++++. .+.+|.+.|++++|+|++..+|++|+.
T Consensus 255 -------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 255 -------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp -------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred -------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 156667788888877 4678887 889999999887654 578899999999999955568889999
Q ss_pred cCeEEEEEeecce
Q 001318 868 DSSIQIYNVRVDE 880 (1101)
Q Consensus 868 dg~v~vwd~~~~~ 880 (1101)
||+|++|++.+..
T Consensus 321 D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 321 DHQVVHHVVPTEP 333 (344)
T ss_dssp TSCEEEEECCC--
T ss_pred CCeEEEEECCCCC
Confidence 9999999998754
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=341.08 Aligned_cols=289 Identities=15% Similarity=0.197 Sum_probs=247.1
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887654 4667899999999999999 89999999999999
Q ss_pred eCCCC------ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
++... .....+.+|.+.|.+++|+ +++..|++++.|++|++||+.+++....+..|...+.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98654 3456778899999999985 455799999999999999999988888888777777776665532
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++++|++|+.||.|++||+++++++..+..|. ..|.+++|+|++++|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 34689999999999999999999999987664 479999999999999999999999999986
Q ss_pred CccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCccee
Q 001318 636 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 715 (1101)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 715 (1101)
.+ .....+.
T Consensus 271 ~~-~~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 AD-REVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TT-EEEEEEC----------------------------------------------------------------------
T ss_pred CC-cEEEEEc----------------------------------------------------------------------
Confidence 54 1100000
Q ss_pred eeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccc
Q 001318 716 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 795 (1101)
Q Consensus 716 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~ 795 (1101)
.
T Consensus 280 --------------------------------~----------------------------------------------- 280 (354)
T 2pbi_B 280 --------------------------------K----------------------------------------------- 280 (354)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 796 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 796 ~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
..+...+.+++|+|++++|++++ |+.|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||.|+||
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00233467888999999999998 89999999999999999999999999999999 99999999999999999
Q ss_pred E
Q 001318 875 N 875 (1101)
Q Consensus 875 d 875 (1101)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-36 Score=338.51 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=181.1
Q ss_pred cccCCCCCeEEEEE-----ec-CCCeEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEE
Q 001318 402 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 471 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s 471 (1101)
.+.+|.+.|++++| ++ |+++|++|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 999999999999999999976532 123446889999999999999999 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 548 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 548 (1101)
|+.|++|++||+++++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.. ...... ..+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999985 4568999999999999999974 322222 256677888888
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
+|++... ..+.|.+.++++++.|+.|++||. ..+....+..|. ..|.+++|+|+|++|++|+.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence 8876411 123455678999999999999994 566667776554 47999999999999999999999
Q ss_pred EEEEEecC
Q 001318 629 IKILATSD 636 (1101)
Q Consensus 629 i~iw~~~~ 636 (1101)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=340.12 Aligned_cols=301 Identities=16% Similarity=0.211 Sum_probs=238.7
Q ss_pred cccc-ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 736 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 736 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
+|.. .|..++|+|+|++|++++.|+.|+||++.... .........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----------------------WICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----------------------EEEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----------------------ceeeeeeccccCCcEEEEEEC
Confidence 3666 89999999999999999999999999974321 000000112389999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCC--ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---eEeeeecCc
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 888 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h 888 (1101)
|++++|++++ |++|++||+.++ +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998866 45788999999999999999 9999999999999999999865 456778899
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEc
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 967 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~ 967 (1101)
...|.+++|+|++++|++++.|++|++||+.+++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999877542 2334455665 48999999999999999 68999999996
Q ss_pred CCc---------------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee--cCCCcccCCCC
Q 001318 968 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1030 (1101)
Q Consensus 968 ~~~---------------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~~~~~ 1030 (1101)
... +++..+. ..|...|++++|+|++.+|++++.|+.|++|+...+..... +........+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 322 2233332 23789999999999999999999999999999876532110 00001112244
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
... |. +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus 303 ~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 SQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 333 66 9999996557999999999999999988773
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-36 Score=336.62 Aligned_cols=324 Identities=14% Similarity=0.166 Sum_probs=264.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
|.+.|.+++|+|||++ ++++..++.+.+|+........ ...+|...|++++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999996 7777767777777655443322 1457999999999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc--eEEEecCcccCe
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 499 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 499 (1101)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 999 9999999999876554443444 7999999999999999 79999999999999999887 667788899999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++|+ ++++++++++.||.|++||+++.+....+..+...+.+++|+|+ +++++++
T Consensus 145 ~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------------~~~l~~~ 201 (337)
T 1gxr_A 145 YALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND---------------------GTKLWTG 201 (337)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------SSEEEEE
T ss_pred EEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC---------------------CCEEEEE
Confidence 999985 45689999999999999999987777776666665655555554 4579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+.||.|++||+++++.+..+... ..+.+++|+|+++++++++.++.|++|++.++. ...
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~----------------- 260 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ----------------- 260 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-----------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-----------------
Confidence 99999999999999988887633 358999999999999999999999999976541 000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 261 -------------------------------------------------------------------------------- 260 (337)
T 1gxr_A 261 -------------------------------------------------------------------------------- 260 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
+ ..|...+.+++|+|++++
T Consensus 261 -----------------------------------------------------------~--~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 261 -----------------------------------------------------------L--HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -----------------------------------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred -----------------------------------------------------------E--cCCccceeEEEECCCCCE
Confidence 0 015566778888888888
Q ss_pred EEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+++++ ||.|++||+.+++.+.... |...+.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88887 7888888888887775543 778899999999 89999999999999999974
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-35 Score=326.84 Aligned_cols=252 Identities=18% Similarity=0.268 Sum_probs=216.4
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
....+|...|++++|+|+|++ |++|+.||.|+||++.+++... .+.+|...|.+++|+|+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSD 76 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTT
T ss_pred EEEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCC
Confidence 334569999999999999995 9999999999999999887665 37789999999999999
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccC
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
+++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+++++.+..+..|...
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 9999999999999999999988665 5788999999999999999 7999999999999999999999999999999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
|.+++|+ +++.+|++++.||.|++||+.+.+....+... ....+..++|+|+++++++
T Consensus 152 v~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 152 VSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------------DNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------------SCCCEEEEEECTTSSEEEE
T ss_pred EEEEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------------CCCceEEEEECCCCCEEEE
Confidence 9999985 56689999999999999999886655443221 1224556667777779999
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 999999999999999999998876654333444554 57899999999999999998776
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=363.23 Aligned_cols=367 Identities=14% Similarity=0.185 Sum_probs=269.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEE----------ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
.+...|.+++|+|+|+.++++| +.|+.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3556899999999998679999 8899999999998763210 013468899999
Q ss_pred EEEecCCCeEEEEEcCCeEEEEEccCCce-eeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCc---
Q 001318 413 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--- 487 (1101)
Q Consensus 413 l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--- 487 (1101)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1133367899999999999998 66 79999999999999999887
Q ss_pred ---eEE---EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC------CCceeEEEEccCCceE
Q 001318 488 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT 555 (1101)
Q Consensus 488 ---~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~ 555 (1101)
... .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-- 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence 333 346799999999996542 479999999999999999987777666655 44455555555442
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCC---cEEEEECCCC-ceeEEEc-CCCCCCCcCeEEEcc-CCCEEEEEeCCCcE
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI 629 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 629 (1101)
.++++++.|+ .|++||++++ ..+..+. .+ ...|.+++|+| ++++|++++.||.|
T Consensus 228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 5789999998 9999999986 5555555 44 44799999999 99999999999999
Q ss_pred EEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccC
Q 001318 630 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 709 (1101)
Q Consensus 630 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 709 (1101)
++||+.++ +.+..+.
T Consensus 288 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 302 (416)
T 2pm9_A 288 LLWNPESA-EQLSQFP---------------------------------------------------------------- 302 (416)
T ss_dssp EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence 99998876 3332221
Q ss_pred CCcceeeeccccCCCccccccccCccccccceEEEEEcCCC-ceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 710 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 710 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.|...|.+++|+|++ ..+++++.|+.|++|++....
T Consensus 303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~----------------- 339 (416)
T 2pm9_A 303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT----------------- 339 (416)
T ss_dssp --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC-----------------
T ss_pred --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC-----------------
Confidence 156678899999999 789999999999999974211
Q ss_pred CCCccccccccCCCCCCC-----CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEE
Q 001318 789 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 863 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~-----~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 863 (1101)
... . ... ......+.+.+..++.+. .+.. ... .....|...+.+++|+| +|++||
T Consensus 340 -----~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~-~~~~~~~~~~~~~~~s~-dg~~la 399 (416)
T 2pm9_A 340 -----NTL----D--EQETETKQQESETDFWNNVSREESKE--KPSV-----FHL-QAPTWYGEPSPAAHWAF-GGKLVQ 399 (416)
T ss_dssp -----CSS----C--C----------------------CCS--CCCS-----SCC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred -----CCc----c--cccccccccCCccccccccccccccc--cccc-----ccc-cCCccccCCccceEEee-CCeEEE
Confidence 000 0 110 001111222222222111 0100 111 22234667788999999 999999
Q ss_pred EEeccCeEEEEEeecc
Q 001318 864 IGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 864 sg~~dg~v~vwd~~~~ 879 (1101)
+|+.||.|+||++.+.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999998764
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.5e-37 Score=354.24 Aligned_cols=353 Identities=12% Similarity=0.121 Sum_probs=291.0
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
..+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+....|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 9999999999999998876543 24445 455666889999999999
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
+.|+.|++||+.+++... .+.+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887554 5679999999999999999 89999999999999999999999999999999999986
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCceeeecC---CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
+ ++.+|++++.||+|++||+++++....+.. +...+.++++.+.+...........+..++|+|+++++++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 4 568999999999999999999888777764 56789999998887765555566788889999999999999999
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCc
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 661 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1101)
|.|++||+.+++.+..+.. .+...|.+++|+|+++ +|++++.||.|++||+.++...+..+..|.....
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v--------- 338 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI--------- 338 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------
Confidence 9999999999988877753 3345799999999999 9999999999999999988555555554322111
Q ss_pred ccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccC--cccccc
Q 001318 662 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP--ENLRAT 739 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~--~~~~~~ 739 (1101)
.....+++..+++++.|+.+++|++..............+ ...+..
T Consensus 339 --------------------------------~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (420)
T 3vl1_A 339 --------------------------------NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD 386 (420)
T ss_dssp --------------------------------EEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred --------------------------------eEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence 1123446789999999999999999875444333222211 145788
Q ss_pred ceEEEEEcCCCc---eEEeeecCceEEeeecc
Q 001318 740 KISRLIFTNSGN---AILALASNAIHLLWKWQ 768 (1101)
Q Consensus 740 ~i~~l~~s~~g~---~l~~~~~dg~i~iw~~~ 768 (1101)
.|.+++|+|++. .+++++.+|.+.+|++.
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 999999999999 89999999999999873
No 41
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=5.6e-35 Score=375.50 Aligned_cols=526 Identities=11% Similarity=0.057 Sum_probs=371.1
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
+...+.+.+|||+ + |+..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 4 555554 799999998876542 678999999999999999999
Q ss_pred EEEcC------CeEEEEEccCCceeeeeeeeccccCCe-------eEEEEcCCCCeEEEEEecCC------CcEEEEeCC
Q 001318 424 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 484 (1101)
Q Consensus 424 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~ 484 (1101)
+++.+ ..|++||+.+++.. .+..|...+ ..++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 47999999987632 477888888 9999999998 67777754 458888887
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEec------------CCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+++... +..+. ...++|+ + | ++++++. +...++|..........+..+...+.+
T Consensus 143 ~g~~~~-l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~------- 208 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSS------- 208 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEE-------
T ss_pred CCCeEE-ecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccc-------
Confidence 776543 33332 3345665 3 5 8888763 234556644333333333444444444
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 631 (1101)
+.|+++ ..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||++|+.+. ++.|++
T Consensus 209 --------------~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 209 --------------PVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp --------------EEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred --------------eEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 444444 3566777889999998653 44445554333 366789999999998884 899999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
|++... .. ..+.++... .
T Consensus 270 ~d~~~~-~l-~~l~~~~~~------------------------------------------------------------~ 287 (1045)
T 1k32_A 270 FNPDTE-KI-EKIEIGDLE------------------------------------------------------------S 287 (1045)
T ss_dssp ECTTTC-CE-EECCCCCCC------------------------------------------------------------B
T ss_pred ecCCce-Ee-eeeccCccc------------------------------------------------------------c
Confidence 987322 11 112110000 0
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEc-CCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 790 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~ 790 (1101)
.. .. ..+...+.+++|+ |||+.+++++ ++.+.+|+..
T Consensus 288 ~~--------------~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 288 PE--------------DR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp CC--------------SE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred cc--------------cc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 00 00 1145678899999 9999888877 7788888763
Q ss_pred CccccccccCCCCCCC-CeeEEEEecCCCEEEEEe-CCeEE-EEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec
Q 001318 791 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 867 (1101)
Q Consensus 791 ~g~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~ 867 (1101)
++.... +. .+.. .+..++|+ ||+.+++++ ++.+. +||+.+++.. .+.+|...+..++|+| |+++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222111 11 1555 78999999 999999988 57788 9999876654 4447888899999999 9999999999
Q ss_pred cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC----------ceEEEeCCCcccccceeeecCCCCCC
Q 001318 868 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 868 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----------~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
++.|++||+.+++....+.+|.+.|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999988888878999999999999999999887654 899999988541 1222222
Q ss_pred CCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCcee-----------------------------------------eee
Q 001318 938 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ 975 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~-----------------------------------------~~~ 975 (1101)
..+..++|+|||++|+. +.++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 35678999999999988 4555555565432211 000
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEE-------------EEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEE
Q 001318 976 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1042 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s-------------~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 1042 (1101)
.....|...+..++|+|||+++++ ...+..|++||+.+++..... .+ +. .++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 111235678899999999998875 123557899999988754221 11 33 7899
Q ss_pred eCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1043 HPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1043 ~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+| ||++|++++.| .|++||+.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 78999988866 89999998876
No 42
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.9e-36 Score=339.32 Aligned_cols=303 Identities=18% Similarity=0.300 Sum_probs=230.7
Q ss_pred CCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeecccc------------------CCeeEEEEcCCCCe
Q 001318 405 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 466 (1101)
Q Consensus 405 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~~~~s~d~~~ 466 (1101)
+|.+.|.+++|||||++||+|+ +++++||++.+++.+.. +.+|. ..|.+++|+|+++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 6999999999999999999986 68999999999886653 33332 2499999999999
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEE
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 546 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 546 (1101)
+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||++++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~---------------- 197 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSGDKLVSGSGDRTVRIWDLRTG---------------- 197 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTT----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc--CCCCEEEEecCCCcEEEEECCCC----------------
Confidence 79999999999999999999999999999999999885 44567777777777777776542
Q ss_pred EEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 625 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 625 (1101)
+....+..+ ..+.+++|+| ++++|++++.
T Consensus 198 -----------------------------------------------~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 198 -----------------------------------------------QCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp -----------------------------------------------EEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred -----------------------------------------------eeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 222222211 1377899999 8999999999
Q ss_pred CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee
Q 001318 626 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 705 (1101)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 705 (1101)
|+.|++||+.++ ..+..+.....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~~-------------------------------------------------------- 250 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSENE-------------------------------------------------------- 250 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence 999999998876 32222110000
Q ss_pred eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCc
Q 001318 706 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 706 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
...+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 0012566777777777777777777777777776521000
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg 865 (1101)
. ... -....+.+...+.+|...|.+++|+| ++++|++|
T Consensus 291 ---------~-------------~~~-------------------~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ---------K-------------SDS-------------------KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ---------c-------------ccc-------------------cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 0 000 00012345566778999999999999 89999999
Q ss_pred eccCeEEEEEeecceEeeeecCcccCeeEEEEcC------CCCEEEEEeCCCceEEEeCCC
Q 001318 866 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|+||+.|++|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.3e-35 Score=325.13 Aligned_cols=291 Identities=22% Similarity=0.409 Sum_probs=247.7
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 524 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~ 524 (1101)
..++.+|...|++++|+|+++ +|++|+.|+.|++||+.+++....+.+|...|.+++|+ +++++|++++.|+.|++
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSNLLVSASDDKTLKI 91 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEE
T ss_pred EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc--CCCCEEEEECCCCEEEE
Confidence 346889999999999999999 79999999999999999999999999999999999985 45689999999999999
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 604 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 604 (1101)
||+.+.+....+..|...+.++.|+| +++++++++.|+.|++||+++++.+..+..+..
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~---------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 150 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNP---------------------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS---------------------SSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcC---------------------CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence 99998877777776666555555555 446899999999999999999999988876544
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
.|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 151 --~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~--------------------------------------- 188 (312)
T 4ery_A 151 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLI--------------------------------------- 188 (312)
T ss_dssp --CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC---------------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeEEe---------------------------------------
Confidence 6999999999999999999999999998665 1111000
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T 4ery_A 189 -------------------------------------------------------------------------------- 188 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
..+...+..++|+|++++|++++ |+.|++||+.+++.+..+.
T Consensus 189 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 189 -------------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp -------------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred -------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 00344577788888999999888 8999999999999888888
Q ss_pred CCCCCeE--EEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCceEEEeCC
Q 001318 844 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD 919 (1101)
Q Consensus 844 ~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~v~iwd~~ 919 (1101)
+|...+. ...+++.++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 8876543 3455544889999999999999999999999999999999999999999999999987 69999999864
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.4e-36 Score=333.37 Aligned_cols=320 Identities=12% Similarity=0.145 Sum_probs=259.1
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
|.+.|.+++|||||++++++..++.+.+|+....... . ...+|...|++++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ--I-NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE--E-EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc--c-eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 4568999999999999999988887777765543222 2 3447999999999999999 788888 99999999987
Q ss_pred Cce---EEEec--CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCC--ceeeecCCCCceeEEEEccCCceEEec
Q 001318 486 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 486 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
++. +..+. +|...|.+++|+ +++++|++++.||.|++||+.+.+ ....+..+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---------------- 143 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA---------------- 143 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC----------------
T ss_pred CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc----------------
Confidence 753 33333 799999999985 466899999999999999998765 23334444444
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 638 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 638 (1101)
+..++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++++|++++.||.|++||+.++
T Consensus 144 -----i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 215 (337)
T 1gxr_A 144 -----CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREG- 215 (337)
T ss_dssp -----EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred -----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCC-
Confidence 4455555556689999999999999999999998887654 47999999999999999999999999998655
Q ss_pred ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeec
Q 001318 639 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 718 (1101)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~ 718 (1101)
+....+
T Consensus 216 ~~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 216 RQLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceEeee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccc
Q 001318 719 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~ 798 (1101)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 799 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 799 ~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0344567778888888888887 78888888887664 46777999999999999 89999999999999999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887754 348889999999999999999999999999996
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.4e-36 Score=345.25 Aligned_cols=346 Identities=12% Similarity=0.110 Sum_probs=273.8
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 487 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 487 (1101)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 346689999999999999999999999999876543 34455 4556667899999 79999999999999999999
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--------------- 193 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG--------------- 193 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------
Confidence 9999999999999999864 56799999999999999999988877777777766666665555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC-CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1101)
++|++++.|+.|++||+++++.+..+..+. +...+.+++|.+++... ..
T Consensus 194 ------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------------~~---- 243 (420)
T 3vl1_A 194 ------RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ--------------------LH---- 243 (420)
T ss_dssp ------TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS--------------------CG----
T ss_pred ------CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce--------------------ee----
Confidence 579999999999999999999998887542 33455566655432110 00
Q ss_pred ccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcc
Q 001318 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 726 (1101)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 726 (1101)
T Consensus 244 -------------------------------------------------------------------------------- 243 (420)
T 3vl1_A 244 -------------------------------------------------------------------------------- 243 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC
Q 001318 727 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 806 (1101)
Q Consensus 727 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~ 806 (1101)
..+...+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 244 --------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 244 --------EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 01334556677889999999999999999988742 221111111 2788
Q ss_pred CeeEEEEecCCC-EEEEEe-CCeEEEEECCCCce-eeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---
Q 001318 807 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 879 (1101)
Q Consensus 807 ~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--- 879 (1101)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+ + ++++|++++.||.|++||+...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 999999999999 999998 89999999998754 667766 5667777755 4 6789999999999999999763
Q ss_pred ------eEeeeecCcccCeeEEEEcCCCC---EEEEEeCCCceEEEeCCC
Q 001318 880 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 880 ------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~D~~v~iwd~~~ 920 (1101)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234567889999999999999 788888899999999864
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-35 Score=335.32 Aligned_cols=275 Identities=14% Similarity=0.237 Sum_probs=207.1
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+.+.++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-.. .............+...|++++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 34556789999999999999995 78876 7899999999988765321100000 000000001112344569999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||++++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987655 5889999999999999999 79999999999999999999988887 56
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
..+.+++|++ .++.+|++|+.||.|++||+.++.....+.... ....+ +...+..++|+|++++|
T Consensus 207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEE
Confidence 6788899864 266899999999999999998876554442110 00011 12356666677777789
Q ss_pred EEEeCCCcEEEEECCCC------------ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++.|+.|++||+.+. .+...+.+| ...|.+++|+|++++|++|+.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999763 234455544 447999999999999999999999999998877
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-34 Score=339.40 Aligned_cols=341 Identities=17% Similarity=0.298 Sum_probs=264.8
Q ss_pred cccCCCCCe-EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEE
Q 001318 402 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 402 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~i 480 (1101)
.+.+|...| .+++| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898885 55555 67899999999999999999988665 678999999999999887 5999999999999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-eEEecc
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 559 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~ 559 (1101)
||+.+++.+..+.+|...|.+++|.+.+++.++++++.||+|++||+.+............ ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665433222211 11222222221 111111
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccc
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
......+.+++++++++++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 22233344557888999999999999999999999999987654 47999999999999999999999999998766 2
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 221111
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+|...|.+++++ ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 145556666665 46777777 7888888888777665554 566788899999 899999998 89999999999
Q ss_pred ceEeee-ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEe
Q 001318 879 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 879 ~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd 917 (1101)
++++.. +.+|.+.|++++|+ ++.++++++.|+.+.+|-
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999876 67899999999997 445555666777655553
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.7e-35 Score=326.90 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=222.1
Q ss_pred eeeeeccccCCeeEEEE-----cC-CCCeEEEEEecCCCcEEEEeCCCC-------ceEEEecCcccCeEEEeeeecCCc
Q 001318 444 QHLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENI 510 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~ 510 (1101)
...++.+|.+.|++++| ++ +++ +|++|+.|++|++||+.++ .....+.+|...|.+++|+ +++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~ 88 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QEN 88 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SST
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCC
Confidence 34468899999999999 76 787 8999999999999998753 4567889999999999985 456
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
.++++++.|++|++||+++++....+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---------------------~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---------------------RQILSAGAEREIKLWNI 147 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---------------------TEEEEEETTSCEEEEES
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---------------------CEEEEEcCCCEEEEEec
Confidence 899999999999999999988777777777766666666655 57999999999999999
Q ss_pred CCCceeEEEcCCCCCCCcCeEEEccCC----------CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCC
Q 001318 591 DSVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 660 (1101)
Q Consensus 591 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1101)
.............+...|.+++|+|++ .+|++++.||.|++||.. . ....
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~------------------ 207 (343)
T 2xzm_R 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRY------------------ 207 (343)
T ss_dssp SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEE------------------
T ss_pred cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeE------------------
Confidence 744333322223445578899999876 455555555555555411 0 0000
Q ss_pred cccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccc
Q 001318 661 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1101)
T Consensus 208 -------------------------------------------------------------------------------- 207 (343)
T 2xzm_R 208 -------------------------------------------------------------------------------- 207 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 820 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~l 820 (1101)
.+. +|...|.+++|+|+|++|
T Consensus 208 ---------------------------------------------------------~~~--~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 208 ---------------------------------------------------------TFK--AHESNVNHLSISPNGKYI 228 (343)
T ss_dssp ---------------------------------------------------------EEE--CCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------EEc--CccccceEEEECCCCCEE
Confidence 001 167778888888888888
Q ss_pred EEEe-CCeEEEEECCC-CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee--eec----------
Q 001318 821 MSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK---------- 886 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~---------- 886 (1101)
++++ |+.|++||+.+ ......+. +...|.+++|+| +++++++| .|+.|++||+.+++... .+.
T Consensus 229 ~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 229 ATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp EEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred EEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 8888 88889998843 33344443 455699999999 88888755 58889999998765433 333
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
+|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 78889999999999999999999999999998764
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=353.90 Aligned_cols=357 Identities=11% Similarity=0.035 Sum_probs=246.3
Q ss_pred CCCCeEEEEEecCC---------CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCC
Q 001318 406 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 476 (1101)
Q Consensus 406 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~ 476 (1101)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57799999999987 899999866420 01368888 799999999
Q ss_pred cEEEEeCCCCceE----EEecCcccCeEEEeeeec----CCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEE
Q 001318 477 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 548 (1101)
Q Consensus 477 ~i~iwd~~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 548 (1101)
+|+|||+.+++.. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+........
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~------------- 250 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH------------- 250 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-------------
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-------------
Confidence 9999999887753 456678899999999876 3467999999999999999875432100
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
... ...++...+..+ ...|.+++|++++ .|++|+.||+
T Consensus 251 --------------------------~~~-------------~~~~p~~~l~~h--~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 251 --------------------------VFK-------------MCEKPSLTLSLA--DSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp --------------------------EEE-------------CCCSCSEEECCT--TTCEEEEEESSSS-EEEEEETTSE
T ss_pred --------------------------cce-------------eecCceEEEEcC--CCCEEEEEecCCC-eEEEEeCCCE
Confidence 000 001122234433 3468999999864 8999999999
Q ss_pred EEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeecc
Q 001318 629 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 708 (1101)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 708 (1101)
|++||+.++......+
T Consensus 289 V~lWD~~~~~~~~~~~---------------------------------------------------------------- 304 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYD---------------------------------------------------------------- 304 (524)
T ss_dssp EEEEETTBCSSCSEEE----------------------------------------------------------------
T ss_pred EEEEECCCCCCceEEe----------------------------------------------------------------
Confidence 9999986541100000
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
T Consensus 305 -------------------------------------------------------------------------------- 304 (524)
T 2j04_B 305 -------------------------------------------------------------------------------- 304 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCCCCCCCeeEE--EEecCC-CEEEEEe-CCeEEEEECCCCceeeEecCCCC--CeEEEEEecCCCcEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNII 862 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~--~~s~dg-~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~l 862 (1101)
. +|...|.++ +|++++ .+||+++ |++|+|||+.++++..++.+|.. .|.+++|+| +++.+
T Consensus 305 -----------~--~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l 370 (524)
T 2j04_B 305 -----------Q--VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSY 370 (524)
T ss_dssp -----------E--CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEE
T ss_pred -----------e--cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeE
Confidence 0 166677777 467777 7889988 89999999998888777776653 588999999 88899
Q ss_pred EEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC--CCCC
Q 001318 863 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQ 940 (1101)
Q Consensus 863 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~ 940 (1101)
++++.|++|++||+.++.++..+.+|.+.|++|+|||+|++|++|+.|++|++||+..+. +....... ....
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~------~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL------LHGIKNSSATQKSL 444 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST------TTCC------CCCC
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh------ccccccCccceeee
Confidence 999999999999999998888899999999999999999999999999999999986531 11111000 0012
Q ss_pred CCeEEEEcCCCcEEEEEeCCeEEEEEcC-CceeeeeccCCCCCCCeeEEEEcCCCC---EEEEEEcCCeEEEEEcCC
Q 001318 941 SDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~l~~spdg~---~l~s~s~dg~v~vwd~~~ 1013 (1101)
.+..++|+|+|..+.... .+.+|+.. ++.++..+. +|...|.+++|+|++. +|++|+.||+|+||++.-
T Consensus 445 ~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 456899999998553322 23344332 455555554 8899999999999964 999999999999999763
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-35 Score=323.75 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=197.0
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccc-c-CCCCCeEEEEEec
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSP 417 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~sp 417 (1101)
.+.+|.+.|++++|+|+ +||+|+.|++|+|||+.++...... .+ . +|...|.+++|+|
T Consensus 9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRP 68 (330)
T ss_dssp EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECT
T ss_pred eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECC
Confidence 34469999999999998 5999999999999999875321110 12 3 4999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCc----eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC----CceE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQ 489 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~ 489 (1101)
++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 99999999999999999996432 1233446889999999999999999 899999999999999943 2567
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC--CceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
..+.+|...|.+++|++ ++.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 147 ~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 210 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-------------- 210 (330)
T ss_dssp EEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS--------------
T ss_pred EEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC--------------
Confidence 88999999999999964 5679999999999999998765 34556667777666666666521
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC--------ceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.++++++.|++|++||+..+ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 -----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 -----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp -----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred -----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 347999999999999998764 23333332 144579999999765 8999999999999998655
No 51
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.8e-34 Score=366.85 Aligned_cols=494 Identities=13% Similarity=0.069 Sum_probs=355.5
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecC------CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 408 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 408 (1101)
......+..|...|.+++|||||++ ||+++.+ ..|.+||+.+++.. .+..|..
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~ 100 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSG 100 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCE
T ss_pred CCcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCC
Confidence 3455667779999999999999997 5555432 37999999887643 2677888
Q ss_pred Ce-------EEEEEecCCCeEEEEEcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC-
Q 001318 409 SV-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD- 474 (1101)
Q Consensus 409 ~V-------~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~- 474 (1101)
.+ .+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 101 ~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~ 170 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNT 170 (1045)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESC
T ss_pred cccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccC
Confidence 88 999999999977777754 468888888876432 3333 345678999 6 3666542
Q ss_pred -----------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCc
Q 001318 475 -----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRW 542 (1101)
Q Consensus 475 -----------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~ 542 (1101)
+...++|....+.....+.+|...+.++.|+ ++ .++++++.|+.+.+|.++.. .....+..+. .
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s--~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~ 246 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D 246 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe--CC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-C
Confidence 3456677544445556678999999999985 34 57778888999999987642 2222232222 1
Q ss_pred eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC---------CCCCcCeEEE
Q 001318 543 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRF 613 (1101)
Q Consensus 543 v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~ 613 (1101)
+. ..+|+|+|++++.+ .++.|++|++...+ +..+..+. +...+.+++|
T Consensus 247 ~~---------------------~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~ 303 (1045)
T 1k32_A 247 YY---------------------PRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDF 303 (1045)
T ss_dssp SC---------------------EEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEE
T ss_pred cc---------------------eeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeee
Confidence 22 33555555667766 48999999995443 44544321 1125889999
Q ss_pred c-cCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCC
Q 001318 614 N-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 692 (1101)
Q Consensus 614 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1101)
+ |||++|++++ ++.+++|+..++ .... +.
T Consensus 304 S~pdG~~la~~~-~~~i~~~~~~~~-~~~~-~~----------------------------------------------- 333 (1045)
T 1k32_A 304 SPLDGDLIAFVS-RGQAFIQDVSGT-YVLK-VP----------------------------------------------- 333 (1045)
T ss_dssp EECGGGCEEEEE-TTEEEEECTTSS-BEEE-CS-----------------------------------------------
T ss_pred cCCCCCEEEEEE-cCEEEEEcCCCC-ceEE-cc-----------------------------------------------
Confidence 9 9999999888 788999987655 1110 00
Q ss_pred CccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc-ceEEEEEcCCCceEEeeecCceEE-eeecccc
Q 001318 693 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRT 770 (1101)
Q Consensus 693 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-iw~~~~~ 770 (1101)
.+.. .+..++|+ ||+.++.++.++.+. +|++.
T Consensus 334 -------------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-- 367 (1045)
T 1k32_A 334 -------------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-- 367 (1045)
T ss_dssp -------------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT--
T ss_pred -------------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC--
Confidence 1333 67788999 999898888877776 77652
Q ss_pred ccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCe
Q 001318 771 ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA 849 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i 849 (1101)
++.... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+
T Consensus 368 --------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v 423 (1045)
T 1k32_A 368 --------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI 423 (1045)
T ss_dssp --------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred --------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc
Confidence 222211 11 2677899999999999999998 7899999999999888887898999
Q ss_pred EEEEEecCCCcEEEEEeccC----------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 850 TFLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+..
T Consensus 424 ~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9999999 899998887654 99999999887 67788888889999999999999999998888888754
Q ss_pred Ccccccc---ee--eec-----------------------CCCC-------CCCCCCCeEEEEcCCCcEEEE--------
Q 001318 920 GWEKQKN---RF--LQI-----------------------PTGR-------TPTAQSDTRVQFHQDQIHFLV-------- 956 (1101)
Q Consensus 920 ~~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~la~-------- 956 (1101)
....... .. +.. ..+. ......+..++|+|||+++++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~ 581 (1045)
T 1k32_A 502 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 581 (1045)
T ss_dssp SSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH
T ss_pred ccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccc
Confidence 3221000 00 000 0000 001245788999999997774
Q ss_pred ----E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 957 ----V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 957 ----~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 582 ~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 582 AYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2457899999988764332 468899999999999998866 89999998887
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-34 Score=335.25 Aligned_cols=317 Identities=19% Similarity=0.310 Sum_probs=268.2
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 47789887643 366679999999999999999999988665 678999999999997 44 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.+++.+..+.+|...|.++.|+ +..+++|+.||+|++||+.+++....+..+...+.++.+
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~------------- 247 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------------- 247 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-------------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-------------
Confidence 999999999999999999999873 258999999999999999998887777777776666665
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
+++++++++.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++ +.+
T Consensus 248 ----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 248 ----------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ----------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ----------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 23469999999999999999999999987554 46888888 8899999999999999998765 211
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+.
T Consensus 313 ~~~~---------------------------------------------------------------------------- 316 (445)
T 2ovr_B 313 HTLT---------------------------------------------------------------------------- 316 (445)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEc----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC---CCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 802 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+|...+.++.+ +++++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.
T Consensus 317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence 03344555544 456888888 89999999999999988876 788899999964 699999999999999999
Q ss_pred cceEeeee-----cCcccCeeEEEEcCCCCEEEEEeCCCc----eEEEeCCC
Q 001318 878 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 920 (1101)
Q Consensus 878 ~~~~~~~l-----~~h~~~V~~l~~s~dg~~l~s~s~D~~----v~iwd~~~ 920 (1101)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988887 578899999999999999999999998 99999876
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=324.36 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=225.8
Q ss_pred cccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEe
Q 001318 735 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 814 (1101)
Q Consensus 735 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s 814 (1101)
.+|...|.+++|+++ +|++++.|+.|++|++..+.. .... .+...+|...|.+++|+
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s 67 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR 67 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence 348899999999988 899999999999999743210 0111 01112388999999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec----ceEe
Q 001318 815 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK 882 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~ 882 (1101)
|++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999 99999999853 356678899999999999999 899999999999999999943 3577
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC--CcEEEE-EeC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~-~~d 959 (1101)
..+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|.. .|.+++|+|+ +.+|++ +.|
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETT
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCC
Confidence 8899999999999999999999999999999999987642 234455666653 8999999999 778888 689
Q ss_pred CeEEEEEcCCc--------eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee--eeecCCCcccCCC
Q 001318 960 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1029 (1101)
Q Consensus 960 ~~v~vwd~~~~--------~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~ 1029 (1101)
+.|++||+.++ .+...+. ..|...|++++|++++ +|++++.||+|+|||..+++. +.... .+
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~ 292 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC 292 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence 99999999765 3333332 2489999999999765 889999999999999988743 32221 13
Q ss_pred CCCCCccceEEEEeCC-CCCEEEEEecCCcEEEEeccC
Q 001318 1030 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1030 ~~~~~v~~~~i~~~~~-d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
|....+. +++|+|. ++++|++|+.||+|++|++.+
T Consensus 293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 3332355 8999985 578999999999999999865
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=350.06 Aligned_cols=361 Identities=9% Similarity=0.034 Sum_probs=248.5
Q ss_pred CcceeecccCCCCcEEEEEecCC---------CeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccC
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 405 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg---------~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1101)
..+...++.+.+.|.+|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 34455567789999999999987 5 58888755310
Q ss_pred CCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceee-eeeeeccccCCeeEEEEcCC------CCeEEEEEecCCCcE
Q 001318 406 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 478 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~~~~s~d------~~~~~l~s~~~d~~i 478 (1101)
-..+|++++||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999998876432 12346678899999999997 45 79999999999
Q ss_pred EEEeCCCCce-----------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-eeeecCCCCceeEE
Q 001318 479 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 546 (1101)
Q Consensus 479 ~iwd~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~ 546 (1101)
+|||+.++.. ..++.+|...|++++|++ + ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 347889999999999964 2 4899999999999999987643 33466666666665
Q ss_pred EEccCCceEEeccccCceeEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 547 AYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 547 ~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
++ .+++++ .+|++++.|++|++||+++++++..+..+.....|.+++|+|+++.+++++.
T Consensus 315 ~~-------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~ 375 (524)
T 2j04_B 315 ST-------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG 375 (524)
T ss_dssp EE-------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECS
T ss_pred EE-------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCC
Confidence 21 233444 5799999999999999999887766655433234789999999999999999
Q ss_pred CCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcccee
Q 001318 626 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 705 (1101)
Q Consensus 626 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 705 (1101)
|++|++||+.++ .....+
T Consensus 376 d~tv~lwd~~~~-~~~~~l------------------------------------------------------------- 393 (524)
T 2j04_B 376 ASSLRAVPSRAA-FAVHPL------------------------------------------------------------- 393 (524)
T ss_dssp SSEEEEEETTCT-TCCEEE-------------------------------------------------------------
T ss_pred CCcEEEEECccc-ccceee-------------------------------------------------------------
Confidence 999999998776 222211
Q ss_pred eccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCc
Q 001318 706 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 706 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.+|...|.+++|+|+|+.|++++.|+.|++|++....
T Consensus 394 -----------------------------~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-------------- 430 (524)
T 2j04_B 394 -----------------------------VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-------------- 430 (524)
T ss_dssp -----------------------------EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST--------------
T ss_pred -----------------------------ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh--------------
Confidence 1277899999999999999999999999999863210
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECC-CCceeeEecCCCCCeEEEEEecCC---CcE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQD---NNI 861 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d---~~~ 861 (1101)
+....+. ....+...+.+++|+|+++.+.. ++.+.+|+.. ++.++.++.+|...|.+|+|+| + +.+
T Consensus 431 -~~~~~~~------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~ 500 (524)
T 2j04_B 431 -LHGIKNS------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKC 500 (524)
T ss_dssp -TTCC------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCSCCCEEECC-STTTTTE
T ss_pred -ccccccC------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCceEEEEECCC-CCCccHH
Confidence 0000000 00002235778999999985532 2233444433 4677888999999999999999 6 459
Q ss_pred EEEEeccCeEEEEEee
Q 001318 862 IAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 862 lasg~~dg~v~vwd~~ 877 (1101)
||+|+.||.|+||++.
T Consensus 501 lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EEEECTTSEEEEEECS
T ss_pred HHhhccCceEEEEEcc
Confidence 9999999999999986
No 55
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=349.34 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=254.1
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccC---CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 388999999999999 999999999999999999987 5433222233 5999999999999999 79999999999
Q ss_pred EEEeCC---CCceEEEecC------------cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--CCC
Q 001318 479 KVWDAT---NGAKQYIFEG------------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGR 541 (1101)
Q Consensus 479 ~iwd~~---~~~~~~~~~~------------h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~ 541 (1101)
++||+. +++.+..+.+ +...+.++.+...+++.+|++++.||.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 999995 6665554432 44556666655667889999999999999999998777766655 444
Q ss_pred ceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc----cCC
Q 001318 542 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDG 617 (1101)
Q Consensus 542 ~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~ 617 (1101)
.|. +++|+|++++|++++.||.|++||+++++++..+... +...|.+++|+ +++
T Consensus 216 ~v~---------------------~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~ 273 (437)
T 3gre_A 216 AVS---------------------SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNS 273 (437)
T ss_dssp CEE---------------------EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTE
T ss_pred ceE---------------------EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCc
Confidence 444 4555555568999999999999999999999888632 22368899665 468
Q ss_pred CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccc
Q 001318 618 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 697 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1101)
.+|++++.||.|++||+.++ +....+.+|...
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~----------------------------------------------- 305 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ----------------------------------------------- 305 (437)
T ss_dssp EEEEEESTTEEEEEEETTTT-EEEEEEESSSSC-----------------------------------------------
T ss_pred cEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC-----------------------------------------------
Confidence 89999999999999999887 555544443221
Q ss_pred ccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCc
Q 001318 698 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 777 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 777 (1101)
+..+.|+|+++.+. +.
T Consensus 306 -------------------------------------------~~~~~~~~~~~~l~----~~----------------- 321 (437)
T 3gre_A 306 -------------------------------------------PSMEHFLPIEKGLE----EL----------------- 321 (437)
T ss_dssp -------------------------------------------CCGGGGSCBCSSGG----GC-----------------
T ss_pred -------------------------------------------Cccceecccccccc----cc-----------------
Confidence 12222333332210 00
Q ss_pred eeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCC---CeEEEE
Q 001318 778 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLA 853 (1101)
Q Consensus 778 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~ 853 (1101)
.+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.. .+....
T Consensus 322 --------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 380 (437)
T 3gre_A 322 --------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ 380 (437)
T ss_dssp --------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred --------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence 01111277889999999 888999998 99999999999999999887643 455666
Q ss_pred EecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEe
Q 001318 854 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 917 (1101)
Q Consensus 854 ~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd 917 (1101)
+++ ...+++.. |+............|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 381 ~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 381 VTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 776 55554433 333444455666779999999999998 78999999999999995
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.7e-34 Score=321.10 Aligned_cols=211 Identities=20% Similarity=0.300 Sum_probs=178.9
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
+|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 48899999999999997 689999999999999999876532 23446889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCceeEEEEccCCceEEe
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
++|+...+........+...+..+.+. +++.+|++++.|+.+++||....... .....+...+..++|++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFS--SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEe--ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 999999999988888888888887764 55579999999999999998765433 23445566666666666553
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 2467889999999999999999999988664 47999999999999999999999999998765
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-34 Score=321.76 Aligned_cols=307 Identities=18% Similarity=0.260 Sum_probs=247.8
Q ss_pred eeecc-cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 338 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 338 ~~~~~-~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
+..+| +|.+.|++++|+|++..+|+||+.|++|+|||+.+.+....... ..+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--------------~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------------RALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--------------EEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--------------EEEeCCCCCEEEEEEC
Confidence 33344 69999999999998544699999999999999987654332211 2478999999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE-EEecCc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 495 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h 495 (1101)
|||++|++++.|+.|++|+...+.... ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999876554 4556888999999999999 7999999999999998776554 445789
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
...+..++|.+.....++++++.|+.|++||+.+.+....+..|...|.+++|+|++ ++
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SL 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CE
Confidence 999999999888777889999999999999999888777777777766666665555 57
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccC
Q 001318 576 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
|++++.|+.|++||+.+.+.+..+..+. .+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+...
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~----- 299 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS----- 299 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee-----
Confidence 9999999999999999999998887553 589999999887655 556899999998776 333322211000
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
....
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (340)
T 4aow_A 300 ----------------------------------------------------------------------------TSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eecc
Confidence 0002
Q ss_pred ccccceEEEEEcCCCceEEeeecCceEEeeecccc
Q 001318 736 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 770 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 770 (1101)
+|...|.+++|+|+|++|++++.||.|+||++.++
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998543
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-34 Score=330.30 Aligned_cols=320 Identities=15% Similarity=0.272 Sum_probs=265.8
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
...+|.+.|.. +++++|++ +++|+.||.|++||+.+++.+.. +.+|.+.|.+++|+ +
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp EEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred EecccCCCcEE-EEEEcCCE-EEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence 34568887643 35667885 99999999999999999987763 78999999999998 6
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 799999999999999999987665 678999999999995 45 69999999999999999999999999999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++| ++.++++++.||.|++||+++.+....+..+...+.++.+ ++.+++++
T Consensus 243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~~ 295 (445)
T 2ovr_B 243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-----------------------DGIHVVSG 295 (445)
T ss_dssp EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-----------------------CSSEEEEE
T ss_pred EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-----------------------CCCEEEEE
Confidence 99987 4578999999999999999988877777777776666665 33579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
+.|+.|++||+.+++.+..+..+.. .+.++.+ +++++++++.||.|++||+.++ +.+..+.++
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------ 358 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------ 358 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence 9999999999999999999876543 5655555 6789999999999999998765 222111100
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..|...|.+++++ +++
T Consensus 359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence 0155667777774 568
Q ss_pred EEEEe-CCeEEEEECCCCceeeEe-----cCCCCCeEEEEEecCCCcEEEEEeccCe----EEEEEeec
Q 001318 820 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 878 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~ 878 (1101)
+++++ ||.|++||+.+++.+..+ .+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 88888 899999999999888887 46788899999999 9999999999997 99999864
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-36 Score=346.93 Aligned_cols=386 Identities=14% Similarity=0.196 Sum_probs=282.8
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCC---Cc-
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 487 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~- 487 (1101)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4688888888765 37744 44444 46 78999999999999 888 899999999999999877 43
Q ss_pred --eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC---CCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 488 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 488 --~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
....+ +|...|.+++|+ +++.+|++++.||+|++||+. .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23444 499999999996 466899999999999999995 44444444433 67777777643 122
Q ss_pred ceeEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+.++. ++++++++++++.|+.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ +.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 455555 668899999999999999999999999999987434557999999999999999999999999998765 22
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
+..+. +
T Consensus 249 ~~~~~------------------------------------------------------------------------~-- 254 (437)
T 3gre_A 249 IRSWS------------------------------------------------------------------------F-- 254 (437)
T ss_dssp EEEEB------------------------------------------------------------------------C--
T ss_pred EEEEe------------------------------------------------------------------------c--
Confidence 22110 0
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
.|...|.+++++|
T Consensus 255 ---------------~~~~~v~~~~~~~---------------------------------------------------- 267 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQ---------------------------------------------------- 267 (437)
T ss_dssp ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred ---------------CCCCceEEEEecc----------------------------------------------------
Confidence 0222333333322
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
+|++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 2335677888988 89999999999999999999999999999999 66555 111
Q ss_pred eEeeeecC--cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.+.+ |...|++++|+ ++++|++++.|+.|++||+.+++.. ....++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1444 99999999999 8899999999999999999987643 2223332222345566666666555443
Q ss_pred eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC--CCEEEEEEcCCeEEEEE
Q 001318 958 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd--g~~l~s~s~dg~v~vwd 1010 (1101)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 223333333322 368999999999998 78999999999999995
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-33 Score=329.25 Aligned_cols=320 Identities=15% Similarity=0.246 Sum_probs=262.8
Q ss_pred eecccCCCCc-EEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 339 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 339 ~~~~~h~~~v-~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+|...| .|+.| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|++++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence 3455688775 66666 456 599999999999999999987763 779999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCce-------
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK------- 488 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~------- 488 (1101)
++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999987665 6789999999999995 555 899999999999999988753
Q ss_pred ----------------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 489 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 489 ----------------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+..+.+|...|.++. +++.++++++.||.|++||+.+.+....+..|...+.+++|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 556788999998874 344799999999999999999888777777776666666655554
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
+++++++.||.|++||+.+++.+..+..|.. .|.+++|+ +++|++++.||.|++|
T Consensus 323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGW 377 (464)
T ss_dssp ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEE
Confidence 5799999999999999999999999986644 68888887 6899999999999999
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
|+.++.....
T Consensus 378 d~~~~~~~~~---------------------------------------------------------------------- 387 (464)
T 3v7d_B 378 DANDYSRKFS---------------------------------------------------------------------- 387 (464)
T ss_dssp ETTTCCEEEE----------------------------------------------------------------------
T ss_pred ECCCCceeee----------------------------------------------------------------------
Confidence 9865411000
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 792 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g 792 (1101)
.
T Consensus 388 -------------------------------------------~------------------------------------ 388 (464)
T 3v7d_B 388 -------------------------------------------Y------------------------------------ 388 (464)
T ss_dssp -------------------------------------------E------------------------------------
T ss_pred -------------------------------------------e------------------------------------
Confidence 0
Q ss_pred cccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 793 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
.+...+..++|+++++++++++||.|++||+.+++.+.. +.+|...|.+++|+ ++.++++++.||.+
T Consensus 389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS 456 (464)
T ss_dssp ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence 033445678889999999999999999999999999876 67788899999998 46778888888877
Q ss_pred EEEEe
Q 001318 872 QIYNV 876 (1101)
Q Consensus 872 ~vwd~ 876 (1101)
.+|-+
T Consensus 457 ~i~~l 461 (464)
T 3v7d_B 457 FLEIL 461 (464)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-34 Score=321.44 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=254.0
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 588999999999999999999999999999999999988665 6788999999999999999 79999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-----CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|+.+++.+..+. |...|.+++|+ +++.++++++.+ |.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999888 88899999985 566899999998 99999998764332110
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0112223333343344689999999999999999999999999865
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111000
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC------
Q 001318 797 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 869 (1101)
Q Consensus 797 ~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------ 869 (1101)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 0566688888888888888888 8999999999988888887 777899999999 899999999888
Q ss_pred --------eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 870 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 870 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||+|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998754
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.1e-34 Score=350.27 Aligned_cols=259 Identities=21% Similarity=0.298 Sum_probs=215.0
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+.+|.+.|++++|+|++..+|+||+.|++|+|||+.+....... ....+.+|...|.+++|+|||+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCC
Confidence 44699999999999987667999999999999999865432110 1114789999999999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe---cCccc
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 497 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 497 (1101)
+|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 5789999999999999999 7999999999999997655443332 46899
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|++ ++|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence 9999999876655789999999999999999887777777777666666665555 5899
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++ ++.|++||+.++ ..+..+
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhh
Confidence 9999999999999999988777643 3589999999999888776 566999999887 444443
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.4e-35 Score=328.97 Aligned_cols=318 Identities=14% Similarity=0.191 Sum_probs=224.2
Q ss_pred cccCCCCCeEEEEEecC----CCeEEEEEcCCeEEEEEccCCceeeeeeeec--cccCCeeEEEEcCC----CCeEEEEE
Q 001318 402 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 471 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~~~~s~d----~~~~~l~s 471 (1101)
+..+|.+.|++++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46799999999999994 5567777777899999999887765443333 36788999999999 45 7999
Q ss_pred ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEE
Q 001318 472 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 548 (1101)
Q Consensus 472 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 548 (1101)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999999651 5579999999999999999875544333 222222
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 444555555555555555566
Q ss_pred EEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeecc
Q 001318 629 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 708 (1101)
Q Consensus 629 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 708 (1101)
|++||+.++ +....+.... .+.+. +..+....
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~ 216 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS 216 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence 666655544 2222111100 00000 00000000
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.......+..
T Consensus 217 -------------------------------------------------~~~~~~~~~~--------------------- 226 (366)
T 3k26_A 217 -------------------------------------------------QKIHFPDFST--------------------- 226 (366)
T ss_dssp -------------------------------------------------EEECCCSEEE---------------------
T ss_pred -------------------------------------------------eeeccCcccc---------------------
Confidence 0000000000
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce--------------eeEecCCCCCeEEEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 853 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~i~~l~ 853 (1101)
. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 0 0155566666666 55666666 66666666655433 667888999999999
Q ss_pred EecCC--CcEEEEEeccCeEEEEEeecce----EeeeecCc--ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 854 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 854 ~sp~d--~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 8 9999999999999999999875 34477777 79999999999999999999999999999853
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=325.10 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=247.6
Q ss_pred CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeee
Q 001318 367 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 445 (1101)
Q Consensus 367 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~ 445 (1101)
++.+++|++.+++... ++.+|.+.|++++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4567777776665543 4788999999999999 9999999999999999999987654422
Q ss_pred ee----------eccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecC-CccEE
Q 001318 446 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 513 (1101)
Q Consensus 446 ~~----------l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l 513 (1101)
.. ..+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999988887 77888888886543 45699
Q ss_pred EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001318 514 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 593 (1101)
Q Consensus 514 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 593 (1101)
++++.||.|++||+.+++....+..|...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888887777777777777664 35889999999999999877
Q ss_pred c-eeEEEcC-------------CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 594 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 594 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------- 290 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------- 290 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence 5 4444421 23445789999999999999999999999999987722 11111000000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
.
T Consensus 291 -----------------------------------------------------------------------------~-- 291 (408)
T 4a11_B 291 -----------------------------------------------------------------------------S-- 291 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
...............+
T Consensus 292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred ----------------------------------------------------------------cccceeEEecCCCceE
Confidence 0000011111223344
Q ss_pred EEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcC
Q 001318 820 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~ 899 (1101)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555589999999999999999999999999999999 8999999999999999999998877665443322 23333
Q ss_pred -CCCEEEEEeCCCceEEEeCCC
Q 001318 900 -ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 900 -dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334556677899999998654
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-33 Score=342.76 Aligned_cols=211 Identities=18% Similarity=0.295 Sum_probs=176.0
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCCcee--eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i 478 (1101)
.+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 47899999999999996 579999999999999999865321 22346889999999999999999 89999999999
Q ss_pred EEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee---cCCCCceeEEEEccCCceE
Q 001318 479 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 479 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~ 555 (1101)
+|||+.+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 999999999999999999999999985 45679999999999999997643222111 23444455555554432
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+++++.|+.|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 14799999999999999999999988876644 79999999999999999999999999987
Q ss_pred Cc
Q 001318 636 DG 637 (1101)
Q Consensus 636 ~~ 637 (1101)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.2e-33 Score=319.02 Aligned_cols=301 Identities=15% Similarity=0.199 Sum_probs=244.3
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc------eEEEecCcccCeEEEeeeec--CCc---cE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF 512 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~~~~--~~~---~~ 512 (1101)
....+.+|.+.|++++|+| + +|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+++ .++ .+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 3446889999999999998 4 79999999999999999988 78889999999999999754 236 79
Q ss_pred EEEEecCCcEEEEecCCCCc-----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc----CCCCE-EEEEeCC
Q 001318 513 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD 582 (1101)
Q Consensus 513 l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~-l~~~~~d 582 (1101)
|++++.||.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.|
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 99999999999999988765 4444444200 002345556666 66678 9999999
Q ss_pred CcEEEEECCC------CceeE-----EEcC-----CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccc
Q 001318 583 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 646 (1101)
Q Consensus 583 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 646 (1101)
|.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 225 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES 225 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence 9999999998 66665 6643 3445579999999999 9999999999999998765 21111100
Q ss_pred ccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcc
Q 001318 647 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 726 (1101)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 726 (1101)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC--
Q 001318 727 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-- 804 (1101)
Q Consensus 727 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-- 804 (1101)
. .+|
T Consensus 226 ------------------------------------------------------------------------~--~~h~~ 231 (397)
T 1sq9_A 226 ------------------------------------------------------------------------Q--HSMIN 231 (397)
T ss_dssp ------------------------------------------------------------------------C--C---C
T ss_pred ------------------------------------------------------------------------c--ccccc
Confidence 0 003
Q ss_pred -CCCeeEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeEecC-------------CCCCeEEEEEecCCCcEEEEEe
Q 001318 805 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM 866 (1101)
Q Consensus 805 -~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~ 866 (1101)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.+ |...|.+++|+| ++++|++|+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 310 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 310 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence 56678888888888888887 7 8899999988888888888 899999999999 899999999
Q ss_pred ccCeEEEEEeecceEeeeec------Cc---------------ccCeeEEEEcCCC----------CEEEEEeCCCceEE
Q 001318 867 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV 915 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~dg----------~~l~s~s~D~~v~i 915 (1101)
.||.|+|||+.+++++..+. +| ...|++++|+|++ ++|++++.|+.|++
T Consensus 311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i 390 (397)
T 1sq9_A 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 390 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence 99999999999999999998 88 9999999999998 79999999999999
Q ss_pred EeCCCc
Q 001318 916 WSSDGW 921 (1101)
Q Consensus 916 wd~~~~ 921 (1101)
|++.++
T Consensus 391 w~~~~g 396 (397)
T 1sq9_A 391 FREAGG 396 (397)
T ss_dssp EEEEC-
T ss_pred EEcCCC
Confidence 999875
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=322.67 Aligned_cols=362 Identities=12% Similarity=0.157 Sum_probs=248.5
Q ss_pred CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCC
Q 001318 581 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 659 (1101)
Q Consensus 581 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1101)
.++.+++|+++.++....+..|. ..|.+++|+| ++++|++++.||.|++|++.++ .....+......
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~--------- 88 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVC--------- 88 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEE---------
T ss_pred ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccc---------
Confidence 35567888888888888777654 4799999999 9999999999999999999877 222211100000
Q ss_pred CcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccccc
Q 001318 660 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 739 (1101)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 739 (1101)
... .....+|..
T Consensus 89 ---------------------------------------------------------~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 89 ---------------------------------------------------------SIG-----------RDHPDVHRY 100 (408)
T ss_dssp ---------------------------------------------------------EEC-----------TTCTTCCSS
T ss_pred ---------------------------------------------------------ccc-----------ccccccCCC
Confidence 000 000023788
Q ss_pred ceEEEEEcC-CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC--
Q 001318 740 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 816 (1101)
Q Consensus 740 ~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d-- 816 (1101)
.|.+++|+| ++..+++++.|+.|++|++.. +...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----------------------LQTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT----------------------TEEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----------------------Cccceec----cCCCceeeeEeecCCC
Confidence 999999999 778899999999999998743 2211111 15677889999884
Q ss_pred -CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeecce-Eeeee-------
Q 001318 817 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 885 (1101)
Q Consensus 817 -g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l------- 885 (1101)
+.++++++ ++.|++||+.+++.+..+.+|...|++++|+| +++ +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899988 89999999999999999999999999999999 666 69999999999999997754 33333
Q ss_pred --------cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 886 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 886 --------~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.+|...|.+++|+|++++|++++.|+.|++||+.+++.............. ............+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 578999999999999999999999999999999987643221111111111 1122333344455666668
Q ss_pred eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccc
Q 001318 958 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1037 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1037 (1101)
.++.|++||+.+++.+..+. +|...|++++|+||+++|++++.||.|++||+.+++.+....... .
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-----------~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT-----------T- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE-----------e-
Confidence 99999999999999998876 789999999999999999999999999999999998876544110 1
Q ss_pred eEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1038 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1038 ~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...+.+.+.....+.+.|+.+++|+...
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1233333455677888899999998753
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.6e-33 Score=317.66 Aligned_cols=302 Identities=12% Similarity=0.120 Sum_probs=235.9
Q ss_pred cccCCCCCeEEEEEecCC-CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~ 479 (1101)
.+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++.... ..+.+|...|.+++|+| ++. +|++++.|+.|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~ 144 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT 144 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence 378999999999999999 9999999999999999998875542 23457999999999999 556 799999999999
Q ss_pred EEeCCCCceEEEecC---cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEE
Q 001318 480 VWDATNGAKQYIFEG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 480 iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+||+.+ ..+..+.. |...|.+++|+ +++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~--- 217 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD--- 217 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence 999985 55566644 44889999985 456899999999999999994 556666666666666666555553
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 631 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 631 (1101)
.++++++.|+.|++||+.+ +..+..+. + ...|.+++|+| ++++|++++.|+.|++
T Consensus 218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 2799999999999999988 66666663 3 34799999999 9999999999999999
Q ss_pred EEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 632 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 632 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
||+.++ .....+.+|.....
T Consensus 278 wd~~~~-~~~~~~~~~~~~~~----------------------------------------------------------- 297 (383)
T 3ei3_B 278 YSSYDW-SKPDQIIIHPHRQF----------------------------------------------------------- 297 (383)
T ss_dssp EETTBT-TSCSEEEECCBCCC-----------------------------------------------------------
T ss_pred EECCCC-cccccccccccccc-----------------------------------------------------------
Confidence 999887 33333332221100
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
.+...+. +.|+|++
T Consensus 298 ------------------------~~~~~~~-~~~~p~~----------------------------------------- 311 (383)
T 3ei3_B 298 ------------------------QHLTPIK-ATWHPMY----------------------------------------- 311 (383)
T ss_dssp ------------------------TTSCCCC-CEECSSS-----------------------------------------
T ss_pred ------------------------ccccceE-EeccCCC-----------------------------------------
Confidence 0112222 2344333
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC--CCCCeEEEEEecCCCcEEEEEecc
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD 868 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d 868 (1101)
.+..++++|++++ +++ |+.|++||+.+++.+..+.+ |...+.+++|+| ++++|++|+ |
T Consensus 312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d 372 (383)
T 3ei3_B 312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G 372 (383)
T ss_dssp ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence 3455778888888 555 89999999999999999987 456788889999 999999997 9
Q ss_pred CeEEEEEeec
Q 001318 869 SSIQIYNVRV 878 (1101)
Q Consensus 869 g~v~vwd~~~ 878 (1101)
|.|+|||+.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.1e-34 Score=329.20 Aligned_cols=311 Identities=13% Similarity=0.125 Sum_probs=227.7
Q ss_pred ccCCCCCeEEEEEec-CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEE
Q 001318 403 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV 480 (1101)
Q Consensus 403 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~i 480 (1101)
..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++. +|++|+.|++|++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i 191 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL 191 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence 456888999999999 67899999999999999998876432 335678999999999998 566 7999999999999
Q ss_pred EeCCCCceEEEecCc--ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEec
Q 001318 481 WDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
||++++........| ...+.+++| ++++.+|++|+.||.|++||++. +....+..|...|.+++|+|++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~----- 263 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD----- 263 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred eeccCCceeEEeccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence 999876554444333 334566666 56678999999999999999875 45566777777788777777765
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++++++.|+.|++||+++.+....+. ...+...|.+++|+|+|++|++++.||.|++||+.++
T Consensus 264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 468899999999999998876544332 2234557999999999999999999999999999887
Q ss_pred cccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeee
Q 001318 638 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 717 (1101)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~ 717 (1101)
.....+..|.....
T Consensus 329 -~~~~~~~~~~~~~~----------------------------------------------------------------- 342 (435)
T 4e54_B 329 -DCPLGLIPHPHRHF----------------------------------------------------------------- 342 (435)
T ss_dssp -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred -ccceEEeccccccc-----------------------------------------------------------------
Confidence 33333322211100
Q ss_pred ccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc
Q 001318 718 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~ 797 (1101)
....+....|++++..++++
T Consensus 343 -------------------~~~~~~~~~~~~~~~~~~~~----------------------------------------- 362 (435)
T 4e54_B 343 -------------------QHLTPIKAAWHPRYNLIVVG----------------------------------------- 362 (435)
T ss_dssp -------------------SSSCCCBCEECSSSSCEEEE-----------------------------------------
T ss_pred -------------------ccceeEEEEEcCCCCEEEEE-----------------------------------------
Confidence 00111223455555444433
Q ss_pred ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEec-CCCCCeEEE-EEecCCCcEEEEEeccCeEEE
Q 001318 798 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI 873 (1101)
Q Consensus 798 ~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l-~~sp~d~~~lasg~~dg~v~v 873 (1101)
+++++..++++. ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus 363 ---------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i 425 (435)
T 4e54_B 363 ---------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI 425 (435)
T ss_dssp ---------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred ---------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence 233333333333 4679999999999988864 677788887 6999 899999876 889999
Q ss_pred EEeecceEe
Q 001318 874 YNVRVDEVK 882 (1101)
Q Consensus 874 wd~~~~~~~ 882 (1101)
||+++++..
T Consensus 426 W~~~~gk~r 434 (435)
T 4e54_B 426 WSQQEARTR 434 (435)
T ss_dssp CCCC-----
T ss_pred EECCcCeee
Confidence 999987643
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=307.56 Aligned_cols=306 Identities=11% Similarity=0.115 Sum_probs=242.0
Q ss_pred cceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 336 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 336 ~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
.+...+.+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 445556779999999999999995 9999999999999999988776 37789999999999
Q ss_pred ecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-----CcEEEEeCCCCc---
Q 001318 416 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 487 (1101)
Q Consensus 416 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~--- 487 (1101)
+|++++|++++.|+.|++||+.+++.+.. +. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 99999999999999999999999887663 33 888999999999999 78888888 999999998764
Q ss_pred --------eEEEecCccc--CeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEE
Q 001318 488 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 488 --------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
.+..+..|.. .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------- 227 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS------- 227 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-------
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-------
Confidence 3445556666 899999854 557999999999999999988 45555556565555555554
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
|++++|++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++...+|....
T Consensus 228 --------------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 228 --------------PDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp --------------TTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred --------------CCCCEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 45568999999999999999999999888733 3589999999999999999998666654322
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 20 01245666
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeecccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 770 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 770 (1101)
++......... .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 65543221111 237889999999999999999999999999998654
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-33 Score=316.58 Aligned_cols=308 Identities=12% Similarity=0.170 Sum_probs=240.7
Q ss_pred EEECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 587 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 587 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
+|++...+....+..|. ..|.+++|+|++ ++|++|+.||.|++||+.++ .....+.
T Consensus 57 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~-------------------- 113 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQ-------------------- 113 (383)
T ss_dssp HHHHTTCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEEC--------------------
T ss_pred cccccccceEEeccCCC--CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeee--------------------
Confidence 34445566666776554 479999999999 99999999999999998766 2111110
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 745 (1101)
. .+|...|.+++
T Consensus 114 ----------------------------------------------------~----------------~~h~~~v~~~~ 125 (383)
T 3ei3_B 114 ----------------------------------------------------G----------------MGPGDAITGMK 125 (383)
T ss_dssp ----------------------------------------------------C----------------CSTTCBEEEEE
T ss_pred ----------------------------------------------------c----------------CCcCCceeEEE
Confidence 0 12778999999
Q ss_pred EcC-CCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 746 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 746 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|+| ++..+++++.|+.|++||+... ..........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGS-----------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSC-----------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCC-----------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 7899999999999999997421 1111111122568899999999999999999
Q ss_pred -CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeec----ceEeeeecCcccCeeEEEEc
Q 001318 825 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 825 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s 898 (1101)
|+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.||.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5788899999999999999999 777 999999999999999998 6666666 699999999999
Q ss_pred C-CCCEEEEEeCCCceEEEeCCCcccccceeeecC--CCCCC-------CCCCCeEEEEcCCCcEEEEEeCCeEEEEEcC
Q 001318 899 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 968 (1101)
Q Consensus 899 ~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~ 968 (1101)
| ++++|++++.|+.|++||+.+++.......... ..+.. ....+..++|+|+|++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 999999999999999999998765332211110 01110 0123344566666666 22579999999999
Q ss_pred CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 969 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 969 ~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++.+..+....|...+.+++|+||+++|++|+ |+.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999887656778889999999999999997 99999999875
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.8e-33 Score=301.33 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=207.4
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 417 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 417 (1101)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|++++|+|
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 4469999999999999995 999999999999999754 2222 4789999999999986
Q ss_pred -CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 418 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 418 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++. ....+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 4899999999999999999987422 22357789999999999998 67 79999999999999998764 24677
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCC----ceeeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999997652 35799999999999999998765 3345667777777777776641
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.+.+|++++.|++|++||+++.. ....+....+...|.+++|+|++++|++++.||.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02579999999999999998753 1223322344557899999999999999999999999997
Q ss_pred cC
Q 001318 635 SD 636 (1101)
Q Consensus 635 ~~ 636 (1101)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 63
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=310.50 Aligned_cols=299 Identities=11% Similarity=0.166 Sum_probs=236.6
Q ss_pred eeccccCCeeEEEEcCCCCeEEEEEecC---CCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecC-CccEEEEEecCCc
Q 001318 447 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK 521 (1101)
Q Consensus 447 ~l~~h~~~V~~~~~s~d~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~~l~s~~~dg~ 521 (1101)
.+.+|...|.+++|+|++.. ++++|+. |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45689999999999999975 5667776 999999999998876543 3699999999996542 2589999999999
Q ss_pred EEEEecCCCC-ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEE
Q 001318 522 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI 599 (1101)
Q Consensus 522 i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 599 (1101)
|++||+.+.+ ....+..|...|.++.|.+. ++|+|++++|++++.||.|++||+.+++ .+..+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence 9999999887 77778888888888765432 1356677899999999999999999887 67777
Q ss_pred cCCCC--CCCcCeEE----EccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhh
Q 001318 600 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 673 (1101)
Q Consensus 600 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1101)
..+.. ...+.+++ |+|+++++++++.||.|++||+.++. ....
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------ 205 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------ 205 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence 65433 33677787 67899999999999999999986651 1000
Q ss_pred cccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceE
Q 001318 674 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 753 (1101)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 753 (1101)
..
T Consensus 206 -------------------------------------------------------------~~----------------- 207 (357)
T 3i2n_A 206 -------------------------------------------------------------TN----------------- 207 (357)
T ss_dssp -------------------------------------------------------------EE-----------------
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred EeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEE
Q 001318 754 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS 829 (1101)
Q Consensus 754 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~---dg~~la~~s-dg~i~ 829 (1101)
|...|.+++|+| ++.++++++ ||.|+
T Consensus 208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 344566666666 666777766 67777
Q ss_pred EEECCCCceeeEec-----CCCCCeEEEEEecCCCc-EEEEEeccCeEEEEEeecc-------------------eEeee
Q 001318 830 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK 884 (1101)
Q Consensus 830 vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~ 884 (1101)
+||+.+++....+. +|...|.+++|+| +++ +|++|+.||.|++||+.++ +.+..
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN 316 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence 77777665555444 8999999999999 777 8999999999999999853 46778
Q ss_pred ecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCCc
Q 001318 885 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW 921 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~ 921 (1101)
+.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus 317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 899999999999999999998 8999999999999874
No 74
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=308.27 Aligned_cols=322 Identities=14% Similarity=0.198 Sum_probs=238.0
Q ss_pred cccCCCCCeEEEEEecCCCeEE-EEEc---CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC---CCeEEEEEecC
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 474 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d---~~~~~l~s~~~ 474 (1101)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++..... ..+|...|.+++|+|+ +. +|++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE--EEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee--eecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999997655 5555 999999999998754322 3379999999999999 56 7999999
Q ss_pred CCcEEEEeCCCCc-eEEEecCcccCeEEEeeee----cCCccEEEEEecCCcEEEEecCCCC-ceeeecCCCC----cee
Q 001318 475 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT 544 (1101)
Q Consensus 475 d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~----~v~ 544 (1101)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.+.. ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5677899999999999999999876 4555544332 333
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc---CCCEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA 621 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~ 621 (1101)
+++|. .+|+|+++++++++.||.|++||+++++....... ...|.+++|+| ++.+|+
T Consensus 169 ~~~~~-----------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 169 TVAFG-----------------NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI---KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp EEEEE-----------------CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEESCSSSSCCEEE
T ss_pred EEEEE-----------------eccCCCCCEEEEEccCCeEEEEECccCceeeecCC---CCceEEEEcCCCCCCCCEEE
Confidence 33321 12567778999999999999999999987665442 33699999999 999999
Q ss_pred EEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCc
Q 001318 622 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 701 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1101)
+++.||.|++||+.++ .....+..
T Consensus 229 ~~~~dg~i~i~d~~~~-~~~~~~~~------------------------------------------------------- 252 (357)
T 3i2n_A 229 ATSLEGKFHVFDMRTQ-HPTKGFAS------------------------------------------------------- 252 (357)
T ss_dssp EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence 9999999999998766 22211100
Q ss_pred cceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceee
Q 001318 702 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 702 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
... .+|...|.+++|+|++. ++++++.||.|++|++...
T Consensus 253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 292 (357)
T 3i2n_A 253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP---------- 292 (357)
T ss_dssp --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence 000 12667788888888887 6888888888888886321
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCc
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 860 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 860 (1101)
.... .+.+++..... .+ +.+.+..+.+|...|++++|+| +++
T Consensus 293 ------------~~~~---------------~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~ 334 (357)
T 3i2n_A 293 ------------IQRS---------------KKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR 334 (357)
T ss_dssp ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred ------------cccc---------------cccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence 0000 01111111100 01 2245667888999999999999 888
Q ss_pred EEE-EEeccCeEEEEEeecceE
Q 001318 861 IIA-IGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 861 ~la-sg~~dg~v~vwd~~~~~~ 881 (1101)
+|+ +|+.||.|+|||+.+.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp TEEEEEETTSEEEEEEECC---
T ss_pred eEEEEecCCCcEEEEECCCccc
Confidence 887 899999999999987653
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-32 Score=310.60 Aligned_cols=264 Identities=17% Similarity=0.265 Sum_probs=209.9
Q ss_pred cCCCCcEEEEEecC---CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC-
Q 001318 343 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 418 (1101)
Q Consensus 343 ~h~~~v~~~~~spd---g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 418 (1101)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|++++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 69999999999995 55557777777899999999887764311 1112347889999999999
Q ss_pred ---CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 419 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 419 ---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987665 5778999999999999 777 8999999999999999999999988
Q ss_pred -cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCc-------------eEEec
Q 001318 493 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 558 (1101)
Q Consensus 493 -~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~ 558 (1101)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 78999999999854 568999999999999999987654432221 001111111 00111
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------eEEEcCCCCCCCcCeEEEccC--CCEEEE
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 622 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~ 622 (1101)
.....+.+++|+ ++++++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEE
Confidence 133467777777 67899999999999999988754 66666554 46899999999 999999
Q ss_pred EeCCCcEEEEEecCc
Q 001318 623 STNDNGIKILATSDG 637 (1101)
Q Consensus 623 ~~~dg~i~iw~~~~~ 637 (1101)
++.||.|++||+.++
T Consensus 305 ~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 305 GNQVGKLYVWDLEVE 319 (366)
T ss_dssp ECTTSCEEEEECCSS
T ss_pred EecCCcEEEEECCCC
Confidence 999999999999876
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.2e-33 Score=320.76 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=221.3
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCcccc
Q 001318 563 SLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 563 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.+++++|+| ++++|++|+.||.|+|||+.+++....+...+|...|++++|+| ++++|++++.||+|++||+.++ ..
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~ 199 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-IL 199 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-ce
Confidence 344555555 33679999999999999999887776666666677899999998 7899999999999999997543 10
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
..+.
T Consensus 200 -~~~~--------------------------------------------------------------------------- 203 (435)
T 4e54_B 200 -RVFA--------------------------------------------------------------------------- 203 (435)
T ss_dssp -EEEE---------------------------------------------------------------------------
T ss_pred -eEEe---------------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..
T Consensus 204 -----------------------------------~~------------------------------------------- 205 (435)
T 4e54_B 204 -----------------------------------SS------------------------------------------- 205 (435)
T ss_dssp -----------------------------------CC-------------------------------------------
T ss_pred -----------------------------------cc-------------------------------------------
Confidence 00
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..+...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.||.|+|||+.+.
T Consensus 206 -~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 206 -DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred -CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 00334467788999999999998 8999999986 46677889999999999999955568999999999999999886
Q ss_pred eEeee---ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 880 EVKSK---LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 880 ~~~~~---l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+.... ..+|...|++++|+|||++|++++.|++|+|||+.+++........... ......+....|+|++.++++
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CCSSSCCCBCEECSSSSCEEE
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--ccccceeEEEEEcCCCCEEEE
Confidence 64443 3679999999999999999999999999999999987643322111100 000112334566666666555
Q ss_pred E-------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEE-EEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 957 V-------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 957 ~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l-~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
+ .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |++|+|||+.+++..
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3 23579999999999988765 3678889887 6999999999876 889999999988754
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=320.46 Aligned_cols=326 Identities=11% Similarity=0.110 Sum_probs=243.1
Q ss_pred cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 450 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 450 ~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.-...|.+++|+|||+ +++|++.|++|+ |...++.+ .+|...|.+++|+|+ | .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPL--E-------FENKLDFELAQ- 75 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECC--C-------CCCTTTTSCCC-
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCC--C-------CcceEEEEeCC-
Confidence 3457899999999999 899999999999 76666544 799999999999654 3 45555555433
Q ss_pred CCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC---C
Q 001318 530 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 605 (1101)
Q Consensus 530 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 605 (1101)
....+. .+...|.+++| +|+|.+|++++.||.|++||... ++..+. +.. .
T Consensus 76 --~~~~~~~~~~~~V~~vaw---------------------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 76 --QNGLLNSQPVCYPRVCKP---------------------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp --SSCSSTTSCSCCEEEEEE---------------------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred --CceEeecCCCCcEEEEEE---------------------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 222222 22444555555 55556899999999999999644 555555 332 2
Q ss_pred CCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccc
Q 001318 606 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 685 (1101)
Q Consensus 606 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1101)
..+.+++|||||++|++|+.||+|++||+.++ ..... .|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~-~l~~~-----------------~~----------------------- 168 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKN-SENTP-----------------EF----------------------- 168 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCC-TTTCC-----------------CC-----------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-ccccc-----------------cc-----------------------
Confidence 25899999999999999999999999998765 11000 00
Q ss_pred cccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEee
Q 001318 686 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 765 (1101)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 765 (1101)
+.+ ..+
T Consensus 169 ---------------------------i~l-----------------------------------------------~ti 174 (588)
T 2j04_A 169 ---------------------------YFE-----------------------------------------------SSI 174 (588)
T ss_dssp ---------------------------EEE-----------------------------------------------EEE
T ss_pred ---------------------------eee-----------------------------------------------eee
Confidence 000 000
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce---eeE
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT---MAT 841 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~---~~~ 841 (1101)
. ....+|...|.+++|+||| +++++ |++|++||+.++.. .++
T Consensus 175 ~--------------------------------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 175 R--------------------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp E--------------------------------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred e--------------------------------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 0 0001277889999999999 45554 99999999988774 356
Q ss_pred e-cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEE--cCCCCEEEEEeCCCceEEEeC
Q 001318 842 F-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 842 ~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+ .+|...|.+++|+ +++||+++ +++|++||+.+++......+|.+.|.+++| +||+..|++++.||+ ++|..
T Consensus 221 L~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 221 IQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred ecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 6 4788899999999 37899887 699999999988874444489999999999 999999999999999 99987
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
+. ++|+||+..++.. |+++++|+...+. ...+ .+...|++++|||||+.+|
T Consensus 296 d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA 346 (588)
T 2j04_A 296 DE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIA 346 (588)
T ss_dssp SS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEE
T ss_pred cc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEE
Confidence 62 4589999887775 9999999986554 3332 2367799999999999999
Q ss_pred EEE
Q 001318 999 ACF 1001 (1101)
Q Consensus 999 s~s 1001 (1101)
+++
T Consensus 347 ~~~ 349 (588)
T 2j04_A 347 IVY 349 (588)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.8e-32 Score=309.06 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=205.7
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc--eeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
|.+.|++++|+|+|++ |++|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999995 9999999999999999886 333 36789999999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce---E-EEecCccc
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA 497 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~h~~ 497 (1101)
|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999886433 234578999999999999999 799999999999999998873 2 33467899
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCC------------------CCceeeecCCCCceeEEEEccCCceEEecc
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 559 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~ 559 (1101)
.|.+++|++ ++.+|++++.||.|++||+.. ......+..+..
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------ 203 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence 999999854 568999999999999999753 222233333333
Q ss_pred ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 560 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+..++|+|++++|++++.|+.|++||+.+++.+..+..+.. .+.+++|+|++++++++ .|+.|++|++.+
T Consensus 204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 556666666777899999999999999999999999986643 69999999999988888 899999999987
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2e-32 Score=310.21 Aligned_cols=323 Identities=13% Similarity=0.162 Sum_probs=240.5
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
+..|.+.|++++|+|||++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999876 223336789999999999999999 799999999999999
Q ss_pred CCCCceEEE--ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCcee---e-ecCCCCceeEEEEccCCceEE
Q 001318 483 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 483 ~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
+.+++.... +..|...|.+++|+ +++.+|++++.||.|++||++...... . ...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--------------- 143 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------------- 143 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence 999876544 46799999999985 456899999999999999998765321 1 122333
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
.+.+++|+|+++++++++.||.|++||+ ..++.+..+..+ ...+.+++|+|+++
T Consensus 144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 4555666666678999999999999995 467777777654 34799999999999
Q ss_pred EEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccc
Q 001318 619 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 698 (1101)
Q Consensus 619 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1101)
+|++++.||.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999876 3222221
Q ss_pred cCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCce
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 778 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 778 (1101)
.|...|.+++|+|++.+++++ .|+.+++|++..
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~--------- 274 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS--------- 274 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET---------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC---------
Confidence 155678999999999866666 899999998732
Q ss_pred eeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEE---ECCCCcee------eEe-cCCCCC
Q 001318 779 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPA 848 (1101)
Q Consensus 779 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vw---d~~~~~~~------~~~-~~~~~~ 848 (1101)
..+..... +..... ..-..+....+++| +... ... ..+ .+|...
T Consensus 275 -----------~~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 275 -----------AAGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp -----------TTTEEEEC------CCCCCC----------------CHHHHHHHCCCCC----------CCCSSSSSSC
T ss_pred -----------cCceEEEe------eccCcc--------ccchhhhcchhhhhhhccccc-ccccCccccccccccccCC
Confidence 00210000 000000 00011113445666 4332 222 333 489999
Q ss_pred eEEEEEecCCC---cEEEEEeccCeEEEEEeecce
Q 001318 849 ATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 849 i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~~ 880 (1101)
|++++|++.++ ++|++|+.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99999776477 999999999999999998754
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-33 Score=311.56 Aligned_cols=294 Identities=12% Similarity=0.162 Sum_probs=218.3
Q ss_pred cCCeeEEEEcCCCCeEEEEEecCCC-------cEEEEeCCCCce----------EEEecCcccCeEEEeeeecCCccEEE
Q 001318 452 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIF 514 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~ 514 (1101)
.-||++++|+||++ +|++|+.|. .|++|++..+.. ...+.+|...|.++++ +. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SK--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ET--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CC--CEEE
Confidence 35899999999998 789987543 599999876532 1246678888887765 33 4677
Q ss_pred EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001318 515 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 515 s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 594 (1101)
+|+.++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 77666554443 23445566666655432
Q ss_pred ee----EEEc---CCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEecCccccccccccccccccccCCCCCCccccc
Q 001318 595 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 665 (1101)
Q Consensus 595 ~~----~~~~---~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1101)
.. .... .......+.+++|+|||+++++++ .|++|++||+.++ +....+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~-------------------- 174 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE-------------------- 174 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE--------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC--------------------
Confidence 21 1111 112223477899999999987654 6899999998876 2222111
Q ss_pred chhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEE
Q 001318 666 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 745 (1101)
|...|.+++
T Consensus 175 -----------------------------------------------------------------------~~~~V~~v~ 183 (365)
T 4h5i_A 175 -----------------------------------------------------------------------TRGEVKDLH 183 (365)
T ss_dssp -----------------------------------------------------------------------CSSCCCEEE
T ss_pred -----------------------------------------------------------------------CCCceEEEE
Confidence 456789999
Q ss_pred EcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe
Q 001318 746 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS 824 (1101)
Q Consensus 746 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s 824 (1101)
|+|||+++++++.++.+.+|.. ++... .... ..|...|.+++|+|+++++++++
T Consensus 184 fspdg~~l~s~s~~~~~~~~~~-----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s 238 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSLEVISTV-----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS 238 (365)
T ss_dssp ECTTSSEEEEECSSCEEEEETT-----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred EccCCceEEeccceeEEEEEec-----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence 9999999988886655444432 22211 1111 23788899999999999999998
Q ss_pred -CC----eEEEEECCCCce----eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeE
Q 001318 825 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG 894 (1101)
Q Consensus 825 -dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~ 894 (1101)
++ .+++|++..... ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|++
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~ 317 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE 317 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence 65 588899876543 356788999999999999 9999999999999999999999998874 899999999
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCc
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGW 921 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~ 921 (1101)
|+|||||++|||+|.|++|+||++...
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999753
No 81
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.5e-32 Score=308.35 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=169.2
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556688999999999987664 6899999999999998886 777899999999 99999999854 56777777766
Q ss_pred Eee--eecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 881 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 881 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+. ...+|...|.+++|+||++++++++.|+ ++++|++......... .....++. ..|.+++|+|||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence 543 4567999999999999999999999887 5888988765432222 22233443 379999999999999
Q ss_pred EE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 955 LV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 955 a~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
|+ +.|+.|+|||+.+++++..+. .+|...|++++|||||++||+||.|++|+|||+...
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 589999999999999988753 389999999999999999999999999999999654
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-33 Score=319.85 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=195.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCe
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 421 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 421 (1101)
+.+.|++++|+|+|++ |++|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 5679999999999995 999999999999999887 3332 47899999999999999999
Q ss_pred EEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCc---eEEEecC-ccc
Q 001318 422 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 497 (1101)
Q Consensus 422 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 497 (1101)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998873333446788999999999999999 79999999999999999887 4778887 999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCC--CC--ceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
.|.+++|+ +++.+|++++.|+.|++||+...+........ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEEC--TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEc--CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 99999986 45689999999999999999753321110000 00 000000 011 223467778888888
Q ss_pred CEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
++|++++.||.|++||+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999987 66666554 479999999999999999876666 66554
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=295.97 Aligned_cols=245 Identities=17% Similarity=0.226 Sum_probs=204.8
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
...+.+|.+.|++++| |++++ |++|+.||.|++||+.+++... .+..|...|.+++|+|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 69 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDS 69 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEET
T ss_pred HHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECC
Confidence 3344569999999999 99995 9999999999999998877655 3667899999999999
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 497 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 497 (1101)
++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|..
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 9999999999999999999876544444568899999999999 456 799999999999999 7888889999999
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC-CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
.+.+++|.+ .++.++++++.||.|++||.. .....+.. +...+.+ ++++|++. +
T Consensus 144 ~v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~---------------------~~~~~~~~-~ 198 (313)
T 3odt_A 144 SVWDAKVVS-FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRH---------------------LAVVDDGH-F 198 (313)
T ss_dssp CEEEEEEEE-TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEE---------------------EEEEETTE-E
T ss_pred ceeEEEEcc-CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEE---------------------EEEcCCCe-E
Confidence 999999875 245799999999999999932 33333333 4444444 44555545 8
Q ss_pred EEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
++++.||.|++||+++++.+..+..+.. .|.+++|+|++ .|++++.||.|++||+.++
T Consensus 199 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 9999999999999999999999986644 79999999999 5889999999999998876
No 84
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-32 Score=312.33 Aligned_cols=259 Identities=12% Similarity=0.081 Sum_probs=209.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC--
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 418 (1101)
..+|.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+|+
T Consensus 12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEEEEEE
T ss_pred hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEecccc
Confidence 346999999999999 4 5999999999999999987611100 000136789999999999999
Q ss_pred --C---CeEEEEEcCCeEEEEEccCCce-----eeeeeeeccc-----cCCeeEEEEc----CCCCeEE-EEEecCCCcE
Q 001318 419 --G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDDKTI 478 (1101)
Q Consensus 419 --g---~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~~~~s----~d~~~~~-l~s~~~d~~i 478 (1101)
| ++|++++.|+.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i 150 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTT 150 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcE
Confidence 9 9999999999999999998875 43 56677 6999999999 9999 7 9999999999
Q ss_pred EEEeCCC------CceEE-----Ee-------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--
Q 001318 479 KVWDATN------GAKQY-----IF-------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-- 538 (1101)
Q Consensus 479 ~iwd~~~------~~~~~-----~~-------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-- 538 (1101)
++||+.+ ++.+. .+ ..|...|.+++|+ +++ ++++++.||.|++||+++.+....+..
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence 9999998 77766 77 4488999999985 566 999999999999999998776666655
Q ss_pred -C---CCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEcCCC--------
Q 001318 539 -P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG-------- 603 (1101)
Q Consensus 539 -~---~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-------- 603 (1101)
| ...+. +++|+|++++|++++.| +.|++||+.+++.+..+....
T Consensus 228 ~h~~~~~~i~---------------------~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 1sq9_A 228 SMINNSNSIR---------------------SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286 (397)
T ss_dssp ---CCCCCEE---------------------EEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred cccccCCccc---------------------eEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc
Confidence 4 44444 45555555689999999 999999999999999887611
Q ss_pred ---CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 604 ---GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 604 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 287 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 3447999999999999999999999999999887 4444443
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=306.66 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=239.4
Q ss_pred ceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 337 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 337 ~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.+...-+|...+.+.++++++.. +++++.|+.|+|||+.+++.... ....|...|.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 33444456665444444444454 67788999999999999887653 233489999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCceEEEecCc
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH 495 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h 495 (1101)
|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||++ .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999987665 577999999999994 45 79999999999999999 56778889999
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
.+.|.+++|++ ++.+|++++.||.|++||+.+......+..+...+.+++|+|++. ..
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~l 274 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NL 274 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TE
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CE
Confidence 99999999864 668999999999999999999888888888888888888877765 45
Q ss_pred EEEEe--CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE--eCCCcEEEEEecCccccccccccccccc
Q 001318 576 FLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDA 651 (1101)
Q Consensus 576 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 651 (1101)
+++++ .|+.|++||+.+++.+..+... ..+.+++|+|++++++++ +.||.|++|++.++ ......
T Consensus 275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~------- 343 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV------- 343 (401)
T ss_dssp EEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-------
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-------
Confidence 66665 7999999999999999888743 359999999999999995 48999999998765 111110
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
.+
T Consensus 344 -----------------------------------------------------------------~~------------- 345 (401)
T 4aez_A 344 -----------------------------------------------------------------DI------------- 345 (401)
T ss_dssp -----------------------------------------------------------------EE-------------
T ss_pred -----------------------------------------------------------------Ee-------------
Confidence 00
Q ss_pred cCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 732 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
.+|...|.+++|+|++.+|++++.||.|++|++..
T Consensus 346 ---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 ---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp ---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred ---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12677899999999999999999999999999843
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-34 Score=318.13 Aligned_cols=222 Identities=8% Similarity=-0.029 Sum_probs=172.9
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 458899999999999 599999999999 7544432 46899999999999999
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCccc-----C
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 498 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~ 498 (1101)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||.|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4555555554432211 12 5688999999999999 799999999999999544 777777 765 4
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCc-------eeee----cCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
|.+++|+ ++|++|++|+.||+|++||+.++.. ..++ .+|.. .+..+
T Consensus 132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~---------------------~V~sV 188 (588)
T 2j04_A 132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD---------------------WVTHI 188 (588)
T ss_dssp EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC---------------------CEEEE
T ss_pred EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc---------------------cEEEE
Confidence 9999984 5678999999999999999987542 2232 22333 55566
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+|+|+| +++++.|++|++||+.++.. ..++. +| ...|.+++|+ |+.|++++ +++|++||+.++
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 666776 78889999999999988774 34553 33 3479999999 68999887 699999998876
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=292.57 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=238.7
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 523 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~ 523 (1101)
...++.+|.+.|++++| ++++ +|++++.||.|++||+.+++....+..|...|.+++|+ +++.++++++.||.|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD--SEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE--TTTTEEEEEETTSCEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC--CCCCEEEEecCCCeEE
Confidence 34468899999999999 8888 79999999999999999999999999999999999986 4668999999999999
Q ss_pred EEecCCCC---ceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 524 AWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 524 ~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
+|++.... ....+..|...+.++.| +++.+++++.|+.|++|| .++.+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF-----------------------QDGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe-----------------------cCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99987642 34445555555555554 235799999999999999 677777777
Q ss_pred CCCCCCCcCeEEEcc-CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 601 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.+. ..+.++.|.| +++++++++.||.|++||.... ...+.
T Consensus 140 ~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~---------------------------------- 180 (313)
T 3odt_A 140 AHN--ASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IKTFS---------------------------------- 180 (313)
T ss_dssp CCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EEEEC----------------------------------
T ss_pred cCC--CceeEEEEccCCCCEEEEEECCCCEEEEecCce---EEEEe----------------------------------
Confidence 554 4789999998 9999999999999999982211 00000
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 181 -------------------------------------------------------------------------------- 180 (313)
T 3odt_A 181 -------------------------------------------------------------------------------- 180 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
..|...+.+++|+|++. +++++ ||.|++||+.+++.
T Consensus 181 ------------------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 181 ------------------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp ------------------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ------------------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 00456688888888888 66666 89999999999999
Q ss_pred eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 839 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 839 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
+..+.+|...|++++|+| ++ .|++++.||.|++||+.+++++..+..|...|++++|+|+++ +++++.|+.|++||+
T Consensus 218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 999999999999999999 77 588999999999999999999999999999999999999998 667999999999999
Q ss_pred CCccc
Q 001318 919 DGWEK 923 (1101)
Q Consensus 919 ~~~~~ 923 (1101)
.+++.
T Consensus 295 ~~~~~ 299 (313)
T 3odt_A 295 EKSRW 299 (313)
T ss_dssp CGGGC
T ss_pred CCCce
Confidence 98654
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.7e-31 Score=303.63 Aligned_cols=239 Identities=17% Similarity=0.234 Sum_probs=198.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
-.+.|+||+++ +||+|. |++|+|||+.+++..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999865 578775 899999999999876531 1467889999999999999999999
Q ss_pred cCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-ceEEEecCcccCeEEEeee
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~ 505 (1101)
.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998766 578999999998885 45 7999999999999998864 4567889999999999874
Q ss_pred ecCCccEEEEEecCCcEEEEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE--E
Q 001318 506 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 579 (1101)
Q Consensus 506 ~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 579 (1101)
+++.++++++.|+.+++|+....+. ......+...|.+++|+|++. ..+++ |
T Consensus 240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 5668999999999999999987653 334556666777777777665 34544 4
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe--CCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~ 637 (1101)
+.|+.|++||+.+++++..+..+. .+.++.|+++++.+++++ .|+.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 579999999999999999887654 488999999999998875 6899999998766
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-32 Score=312.64 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=195.0
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...|.+++|+|++++|++++.|+.|++|++..... .. ...+. +|...|.+++|+|+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK 66 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence 557899999999999999999999999999843210 11 11122 38999999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCc---eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---EeeeecC-c
Q 001318 817 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H 888 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~-h 888 (1101)
+++|++++ |+.|++||+.+++ ....+.+|...|.+++|+| ++++|++|+.||.|++||+.+++ +...+.+ |
T Consensus 67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 99999999 8999999999877 6777888999999999999 89999999999999999999877 4677877 9
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-------------cceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-------------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
...|++++|+|++++|++++.|++|++||+...+.. ...+.... +|. ..|.+++|+|+|++|+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA 221 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence 999999999999999999999999999998643211 12233333 444 4899999999999999
Q ss_pred E-EeCCeEEEEEcCCcee----eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 956 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 956 ~-~~d~~v~vwd~~~~~~----~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
+ +.|+.|++||+.+++. +..+. +|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8 5899999999999887 55554 789999999999999999999877666 66654
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.9e-31 Score=303.48 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=225.3
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
.+..|+||++ ++||+|. |++|+|||..+|+.... ..+.+|...|++|+|+|+|+ +|++|+.|++|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5678999986 4777765 99999999999986643 35668889999999999999 899999999999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce-eeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
+..+.+|...+.++.++ +.++++|+.|+.+++||....... ..+..|...+.. +
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~---------------------~ 236 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG---------------------L 236 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE---------------------E
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceee---------------------e
Confidence 99999999999988763 368999999999999998875433 344555554444 4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce----eEEEcCCCCCCCcCeEEEccCC-CEEEEE--eCCCcEEEEEecCcccc
Q 001318 568 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 640 (1101)
Q Consensus 568 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iw~~~~~~~~ 640 (1101)
.++|+++++++++.|+.+++|+..+++. +..... +...|.+++|+|++ .+++++ +.|++|++||+.++ ..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~ 313 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ--HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-AC 313 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC--CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred eecCCCCeeeeeeccccceEEeeccccccceeeeeecc--cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cc
Confidence 5555556899999999999999987653 344443 34478999999954 555554 47899999998766 11
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+.
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (420)
T 4gga_A 314 LSAVD--------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeec---------------------------------------------------------------------------
Confidence 11000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+...+.++.|+++++.+++++ |+.|+|||+.+++++.++.+|.+.|++++|+| ++++||+|+.||+|+|||+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 233466777788888777654 68999999999999999999999999999999 99999999999999999998
Q ss_pred cceEeeeecCcccCeeEEEEc
Q 001318 878 VDEVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s 898 (1101)
..........+...+....|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCC----------------
T ss_pred CCCccchhhhccCCccccccC
Confidence 766666665565555444443
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.7e-31 Score=289.51 Aligned_cols=283 Identities=18% Similarity=0.244 Sum_probs=217.8
Q ss_pred CeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce
Q 001318 409 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 488 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 488 (1101)
...+|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ +|++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999986 77765 5999999999999876533 4668889999999999999 899999999999999999999
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
+..+.+|...+.++.+ . +..+++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~--~--~~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSW--N--SYILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEE--E--TTEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeec--C--CCEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 9999999988876653 2 2578888888877777655321
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
..+..+..+ ...+..+.+++++++|++++.||.|++||+.++.........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 112223323 335788999999999999999999999998776211100000
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 728 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 728 (1101)
T Consensus 192 -------------------------------------------------------------------------------- 191 (318)
T 4ggc_A 192 -------------------------------------------------------------------------------- 191 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCe
Q 001318 729 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 808 (1101)
Q Consensus 729 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i 808 (1101)
... +...|
T Consensus 192 -----~~~-------------------------------------------------------------------~~~~v 199 (318)
T 4ggc_A 192 -----FTQ-------------------------------------------------------------------HQGAV 199 (318)
T ss_dssp -----ECC-------------------------------------------------------------------CCSCE
T ss_pred -----ecc-------------------------------------------------------------------cCCce
Confidence 000 33344
Q ss_pred eEEEEecCCCEE---EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe--ccCeEEEEEeecceEe
Q 001318 809 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 809 ~~~~~s~dg~~l---a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~ 882 (1101)
.++++++++..+ ++++ ++.|++||........... +...+..+.|++ ++..+++++ .||.|+|||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 555555544322 2333 6889999998877666554 667799999999 666666544 7999999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
.++.+|.+.|++|+|+|||++|||+|.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999865
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-31 Score=301.81 Aligned_cols=291 Identities=13% Similarity=0.131 Sum_probs=223.3
Q ss_pred cCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 404 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 404 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
.+|...+.+.++++++..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEEC
Confidence 456655544444444577889999999999999998866532 224889999999999999 7999999999999999
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
.+++.+..+.+|...|.+++|. +.++++++.||.|++||++. ......+..|...|.+++|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-------------- 225 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW-------------- 225 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE--------------
T ss_pred cCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE--------------
Confidence 9999999999999999999982 36999999999999999985 3344455555555555554
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC-CEEEEEe--CCCcEEEEEecCccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDGIR 639 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~iw~~~~~~~ 639 (1101)
+|++++|++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++ .++++++ .|+.|++||+.++ .
T Consensus 226 -------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~ 295 (401)
T 4aez_A 226 -------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-A 295 (401)
T ss_dssp -------CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-C
T ss_pred -------cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-C
Confidence 5555689999999999999999999988887554 479999999976 4566654 6999999998765 1
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
.+..+.
T Consensus 296 ~~~~~~-------------------------------------------------------------------------- 301 (401)
T 4aez_A 296 RVNTVD-------------------------------------------------------------------------- 301 (401)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 111000
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 874 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw 874 (1101)
+...+.+++|+|++++++++ + ||.|++||+.+++... .+.+|...|.+++|+| ++++|++++.||.|++|
T Consensus 302 ----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 302 ----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFW 376 (401)
T ss_dssp ----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEE
T ss_pred ----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 23346667777777777763 2 6788888887754443 4678999999999999 99999999999999999
Q ss_pred EeecceEeeee
Q 001318 875 NVRVDEVKSKL 885 (1101)
Q Consensus 875 d~~~~~~~~~l 885 (1101)
|+.+++.+...
T Consensus 377 ~~~~~~~~~~~ 387 (401)
T 4aez_A 377 RVYDGDHVKRP 387 (401)
T ss_dssp ECCC-------
T ss_pred ECCCCcccccc
Confidence 99998877654
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-31 Score=287.75 Aligned_cols=252 Identities=12% Similarity=0.110 Sum_probs=205.2
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCC--CceeeEecCCCCCeEEEEEecC-CCcEEEEEeccCeEEEEEeec
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~ 878 (1101)
+|...|.+++|+|+|++||+|+ |++|++||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4678899999999999999862 388999999999999999988
Q ss_pred ce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC----
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 950 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---- 950 (1101)
++ .+..+.+|...|.+++|+|+ |.+|++++.|++|++||+.++..... ....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence 74 56677889999999999998 89999999999999999987532211 2233444 37899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCce----eeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCC
Q 001318 951 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 951 ---------g~~la~-~~d~~v~vwd~~~~~----~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 589999999998765 44444 4899999999999995 8999999999999999987
Q ss_pred cee--e-eecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001318 1014 LKL--R-CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1014 ~~~--~-~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~~ 1072 (1101)
+.. . ..+. ..+| ...++ +++|+| ++++|++++.||.|++|+.... +.|.
T Consensus 239 ~~~~~~~~~~~-----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 239 EQGPWKKTLLK-----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp TTSCCEEEESS-----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred CCCccceeeee-----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence 531 1 1111 1122 22355 899999 7899999999999999998643 3444
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-31 Score=304.99 Aligned_cols=269 Identities=13% Similarity=0.219 Sum_probs=202.4
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe---eeeeeeecCCCCcccccccccCCC-----------
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVWDLGACSMPLQAALVKDPG----------- 407 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~----------- 407 (1101)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.... .+++ ....+.+|.
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYN-----------VYSTFQSHEPEFDYLKSLEI 92 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEE-----------EEEEEECCCCEEEGGGTEEE
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCccccccee-----------Eecccccccccccccccccc
Confidence 457899999999999995 99999999999999998763110 0000 011467888
Q ss_pred -CCeEEEEEecCC--CeEEEEEcCCeEEEEEccCCceee------------------------------------eeee-
Q 001318 408 -VSVNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE- 447 (1101)
Q Consensus 408 -~~V~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~- 447 (1101)
..|.+++|+|++ .+|++++.|++|++||+.+++... ....
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999998 899999999999999998754311 0011
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-CceEE-------EecCcccCeEEEeeeecCCc-cEEEEEec
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENI-QFIFSTAL 518 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~~~ 518 (1101)
..+|...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|++ ++ .+|++++.
T Consensus 173 ~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~ 247 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSS 247 (447)
T ss_dssp CSCCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEET
T ss_pred ccCCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeC
Confidence 368999999999999999 78888 799999999984 44444 2568999999999864 44 79999999
Q ss_pred CCcEEEEecCCCCc----eeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 001318 519 DGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-V 593 (1101)
Q Consensus 519 dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 593 (1101)
||.|++||+++... ...+..+..... ...+. .....+..++|+|++++|++++. +.|++||+.+ +
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSN--------RSFFS-EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-------------CCHHH-HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccc--------ccccc-ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence 99999999998765 445554433100 00000 01125666667777778999988 9999999997 8
Q ss_pred ceeEEEcCCCCCCC-------------cCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 594 QLLTSIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 594 ~~~~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++..+..+..... +..++|+|++++|++++.||.|++||+.++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 88888876643111 234999999999999999999999999987
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.3e-32 Score=296.84 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=202.2
Q ss_pred ccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec--CC
Q 001318 342 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG 419 (1101)
Q Consensus 342 ~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 419 (1101)
.+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++.... ..+.+|.+.|++++|+| ++
T Consensus 10 ~~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCC
Confidence 369999999999999995 99999999999999987753211 13779999999999986 59
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCce---EEEecC
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEG 494 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~ 494 (1101)
++|++|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999987422 23357899999999999998 55 799999999999999987642 345678
Q ss_pred cccCeEEEeeeecC---------------CccEEEEEecCCcEEEEecCCCC---ceeeecCCCCceeEEEEccCCceEE
Q 001318 495 HEAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTY 556 (1101)
Q Consensus 495 h~~~v~~v~~~~~~---------------~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~ 556 (1101)
|...|.+++|++.. ++.+|++|+.|++|++||++... ....+..|...|.+++|+|++.
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--- 225 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--- 225 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS---
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC---
Confidence 99999999987652 14689999999999999997542 3445667777777777777651
Q ss_pred eccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 557 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
.++++|++++.|++|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|
T Consensus 226 --------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 226 --------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp --------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred --------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 012579999999999999997631 12233333 3479999999999999999999999999
Q ss_pred EecC
Q 001318 633 ATSD 636 (1101)
Q Consensus 633 ~~~~ 636 (1101)
+...
T Consensus 290 ~~~~ 293 (316)
T 3bg1_A 290 KESV 293 (316)
T ss_dssp EECT
T ss_pred EECC
Confidence 9763
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-31 Score=292.86 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=175.6
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 479 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~ 479 (1101)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999887532 23468899999999999864 66 799999999999
Q ss_pred EEeCCCCc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCc---eeeecCCCCceeEEEEccCCce
Q 001318 480 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 480 iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
+||+++++ .+..+.+|...|.+++|+++.++.+|++|+.|++|++||+..... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 667888999999999998776678999999999999999987533 2345667778888999887530
Q ss_pred E-EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCCCCcCeEEEccCC----CEEEEEeCC
Q 001318 555 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 626 (1101)
Q Consensus 555 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 626 (1101)
- +..+..+ ....++++|++++.|+.|++||++.. +.+..+..| ...|.+++|+|++ ++|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 0 0000000 01122468999999999999999765 345555544 4579999999986 899999999
Q ss_pred CcEEEEEecCc
Q 001318 627 NGIKILATSDG 637 (1101)
Q Consensus 627 g~i~iw~~~~~ 637 (1101)
++|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
No 97
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=2.3e-30 Score=290.18 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=179.8
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI 478 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i 478 (1101)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| +++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 57899999999999999999999999999999999976432 33446789999999999999 577 79999999999
Q ss_pred EEEeCCCC---------ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc
Q 001318 479 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 479 ~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 549 (1101)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+... ..+..+.+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence 99999987 56788899999999999976633689999999999999999887654432210 001111111
Q ss_pred cCCceEEeccccCceeEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCC----CEEEE
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV 622 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~ 622 (1101)
+ ......+.+++|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|++
T Consensus 163 ~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 163 P-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp C-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred c-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 1 112335667777776 789999999999999998888763333333455689999999998 89999
Q ss_pred EeCCCcEEEEEecCc
Q 001318 623 STNDNGIKILATSDG 637 (1101)
Q Consensus 623 ~~~dg~i~iw~~~~~ 637 (1101)
++.||.|++||+.++
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999999765
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=3.1e-30 Score=291.64 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=230.1
Q ss_pred cccCCCCCeEEEEEecC---CCeEEEEEcCCeEEEEEccC-CceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCc
Q 001318 402 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 477 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~ 477 (1101)
.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47899999999999999 69999999999999999997 44332 25778999999999999999 7999999999
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEe
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~--------- 178 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV--------- 178 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE---------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe---------
Confidence 9999999998776 4569999999999777888999999999999999999877766655443 2222222
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCE----EEEEeCCCcEEEEE
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA 633 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~ 633 (1101)
....+++++.++.+++|++.................+.++++.++... +++++.||.|++|+
T Consensus 179 --------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 179 --------------IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp --------------ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred --------------cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 224688899999999999987655444332222234455555554443 67777777777777
Q ss_pred ecCcccc--ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCC
Q 001318 634 TSDGIRL--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 711 (1101)
Q Consensus 634 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 711 (1101)
+...... ...+.+
T Consensus 245 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 259 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC----------------------------------------------------------------- 259 (368)
T ss_dssp SSCSCHHHHSEEEEC-----------------------------------------------------------------
T ss_pred cCCCCccccceeeee-----------------------------------------------------------------
Confidence 6543100 000000
Q ss_pred cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCC
Q 001318 712 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 791 (1101)
Q Consensus 712 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~ 791 (1101)
T Consensus 260 -------------------------------------------------------------------------------- 259 (368)
T 3mmy_A 260 -------------------------------------------------------------------------------- 259 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeE
Q 001318 792 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSI 871 (1101)
Q Consensus 792 g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v 871 (1101)
|... .......+|...|++++|+| ++++|++|+.||.|
T Consensus 260 ------------~~~~-----------------------------~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i 297 (368)
T 3mmy_A 260 ------------HRSN-----------------------------GTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRF 297 (368)
T ss_dssp ------------SEEC---------------------------------CCCEEECCEEEEEECT-TTCCEEEEETTSCE
T ss_pred ------------eecc-----------------------------cccccccccccceEEEEEec-CCCEEEEEccCCeE
Confidence 0000 00000122345799999999 89999999999999
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++||+.+++++..+.+|...|++++|+|||++|++++.|+..+.|++-.
T Consensus 298 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 298 SFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 9999999999999999999999999999999999999998766665544
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=3.7e-30 Score=287.75 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=230.3
Q ss_pred cccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 402 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
+..+|.+.|++++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999988732223345689999999999999872 38899999999999
Q ss_pred eC-CCCceEEEecC--cccCeEEEeeeecCCccEEEEEecCCcEEEEecCC---------CCceeeecCCCCceeEEEEc
Q 001318 482 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 482 d~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s 549 (1101)
|+ .+++. ..+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~------- 152 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK------- 152 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------
Confidence 99 77755 77888 999999999975 57999999999999999886 44433333 3333
Q ss_pred cCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCC
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 627 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 627 (1101)
+.++++++++ +++++.|+.|++||+++ +..........+...+.+++|+| +++++++++.||
T Consensus 153 --------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 153 --------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp --------------EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred --------------eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 4445555554 89999999999999998 55432222223344789999999 999999999999
Q ss_pred cEEEEEecCcc-----ccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCcc
Q 001318 628 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 702 (1101)
Q Consensus 628 ~i~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1101)
.|++|++.... .....+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 99999986540 11111100000
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 782 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 782 (1101)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCc
Q 001318 783 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 860 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 860 (1101)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEeccCe-EEEEE
Q 001318 861 IIAIGMDDSS-IQIYN 875 (1101)
Q Consensus 861 ~lasg~~dg~-v~vwd 875 (1101)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44433
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=278.30 Aligned_cols=282 Identities=17% Similarity=0.286 Sum_probs=229.7
Q ss_pred eEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEE
Q 001318 741 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 820 (1101)
Q Consensus 741 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~l 820 (1101)
...++||+++ +++++.|++|+|||+. +|..+.. +...+|...|.+++|+|+++++
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4678999886 4555679999999873 3433221 2223488899999999999999
Q ss_pred EEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecCcccCeeEEEEc
Q 001318 821 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 898 (1101)
Q Consensus 821 a~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s 898 (1101)
++|+ ||+|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+.... ..+..+.+|...+..+.|+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 9999999999999999999999888776654 579999999999999998865 5667789999999999999
Q ss_pred CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE----EeCCeEEEEEcCCceeee
Q 001318 899 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK 974 (1101)
Q Consensus 899 ~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~v~vwd~~~~~~~~ 974 (1101)
+++++|++++.|++|++||+.+++........ ...+. ..|..++++|++..++. +.++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 99999999999999999999987643322222 22222 47899999998765543 257899999999888776
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEE--cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.. .|...+..+.|+|++..+++++ .|+.|+|||+.+++.+..+. +|.+. |. +++|+| |+++|++
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence 65 3577899999999999888765 79999999999999999887 44443 66 899999 7899999
Q ss_pred EecCCcEEEEeccCCC
Q 001318 1053 GLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~~~~ 1068 (1101)
|+.||+|++||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.2e-29 Score=293.58 Aligned_cols=233 Identities=20% Similarity=0.340 Sum_probs=203.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
+|...|.|++| ++++ +++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 46778998877 7884 9999999999999999988766 37899999999999 89999
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceE---EEecCcccCe
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 499 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v 499 (1101)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|+.|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998665 5778999999999974 4 6999999999999999988766 6788999999
Q ss_pred EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 500 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
.+++| ++.++++|+.||.|++||+.+.+....+..|...+.++.+. ++++++|
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99987 34799999999999999999988887777777766666552 3579999
Q ss_pred eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.||.|++||+.+++.+..+..+.. .|.+++| ++++|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999999999986544 6888888 8899999999999999998765
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=295.90 Aligned_cols=304 Identities=12% Similarity=0.125 Sum_probs=223.8
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc-ccccccCCCCCC----------
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE---------- 805 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~---------- 805 (1101)
+...|.+++|+|+|++|++++.||.|++|++......... ..+. .....+.+ |.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence 6789999999999999999999999999998643210000 0000 01111222 65
Q ss_pred --CCeeEEEEecCC--CEEEEEe-CCeEEEEECCCCcee---------------------------------------eE
Q 001318 806 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 841 (1101)
Q Consensus 806 --~~i~~~~~s~dg--~~la~~s-dg~i~vwd~~~~~~~---------------------------------------~~ 841 (1101)
..|.+++|+|++ .++++++ |+.|++||+.++... +.
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764432 12
Q ss_pred -ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEee-------eecCcccCeeEEEEcCCC-CEEEEEeCCC
Q 001318 842 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 911 (1101)
Q Consensus 842 -~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~-------~l~~h~~~V~~l~~s~dg-~~l~s~s~D~ 911 (1101)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ .+|++++.|+
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999999 799999999984 44444 467899999999999998 9999999999
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCC---------CCCCeEEEEcCCCcEEEEEeCCeEEEEEcCC-ceeeeeccCCCC
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 981 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~-~~~~~~~~~~~h 981 (1101)
+|++||+.+++.... ......++... ...|.+++|+|+|++|+++.++.|++||+.+ ++.+..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998663211 12222333210 0278999999999999997669999999997 77777766 44
Q ss_pred CCC---------------eeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc------ccC-------------
Q 001318 982 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------------- 1027 (1101)
Q Consensus 982 ~~~---------------i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~------~~~------------- 1027 (1101)
... +..++|+||+++|++|+.||.|++||+.+++.+....... ..+
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3459999999999999999999999999998764211000 000
Q ss_pred -----CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1028 -----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1028 -----~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.-.... ..+.++|+| ++++|++++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~--~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNK--KILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTS--CCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCC--ceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 000011 234899999 688999988776 777764
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=9.8e-30 Score=294.22 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=229.0
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 527 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~ 527 (1101)
..+|...|.+++| +++ ++++|+.|+.|++||+.+++.+..+.+|.+.|.+++| ++.+|++|+.||+|++||+
T Consensus 129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 4467788999988 677 7999999999999999999999999999999999987 4579999999999999999
Q ss_pred CCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCC
Q 001318 528 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG 604 (1101)
Q Consensus 528 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~ 604 (1101)
.+++....+..|...|.+++|++ +.+++++.||.|++||+.+++.. ..+..+
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-- 255 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-- 255 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence 99888888887777777776642 36999999999999999988765 444444
Q ss_pred CCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccccc
Q 001318 605 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 684 (1101)
Q Consensus 605 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1101)
...|.+++| +++++++++.||.|++||+.++ +.+..+.
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~--------------------------------------- 293 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN--------------------------------------- 293 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE---------------------------------------
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEc---------------------------------------
Confidence 446888888 7889999999999999998665 2111110
Q ss_pred ccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEe
Q 001318 685 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 764 (1101)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 764 (1101)
T Consensus 294 -------------------------------------------------------------------------------- 293 (435)
T 1p22_A 294 -------------------------------------------------------------------------------- 293 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEec
Q 001318 765 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 843 (1101)
Q Consensus 765 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 843 (1101)
+|...|.++++ +++++++|+ ||.|++||+.+++++.++.
T Consensus 294 --------------------------------------~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 294 --------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp --------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 04555666766 467888888 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce---------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceE
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 914 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~ 914 (1101)
+|...|.+++| ++++|++|+.||.|++||+.+++ ++..+.+|.+.|++++| ++.+|++++.||+|+
T Consensus 334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 99999999998 46799999999999999998876 88899999999999999 788999999999999
Q ss_pred EEeCCCcc
Q 001318 915 VWSSDGWE 922 (1101)
Q Consensus 915 iwd~~~~~ 922 (1101)
+||+.+..
T Consensus 409 iwd~~~~~ 416 (435)
T 1p22_A 409 IWDFLNDP 416 (435)
T ss_dssp EEC-----
T ss_pred EEECCCCC
Confidence 99998754
No 104
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.8e-30 Score=287.74 Aligned_cols=245 Identities=9% Similarity=0.007 Sum_probs=203.9
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC-e
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 421 (1101)
+|.+.|++++|+|++++ |++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence 59999999999999995 89999999999999988762110 002458999999999999999 9
Q ss_pred EEEEEcCCeEEEEEc-cCCceeeeeeeecc--ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC---------CceE
Q 001318 422 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 489 (1101)
Q Consensus 422 las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 489 (1101)
|++|+.||.|++||+ .+++.. .+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 887642 4778 999999999999 77 799999999999999988 7777
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC-CCcee--eecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
..+. |...|.+++|+ +++ +++++.|+.|++||++. ..... ....+.. .+.+
T Consensus 145 ~~~~-~~~~v~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------------~i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------------QIRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEEC--SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------------CEEE
T ss_pred eEEe-eCCceEEEEec--CCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------------ceeE
Confidence 7777 88999999985 433 99999999999999987 44321 2222233 4556
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEECCCC------ceeEEEcCCCC-------CCCcCeEEEccCCCEEEEEeCCCcEEEE
Q 001318 567 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 632 (1101)
Q Consensus 567 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw 632 (1101)
++|+| +++++++++.||.|++|+++.. +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 66666 6678999999999999999887 77788876643 3479999999999999999999999999
Q ss_pred EecCc
Q 001318 633 ATSDG 637 (1101)
Q Consensus 633 ~~~~~ 637 (1101)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=7.5e-30 Score=288.45 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=198.1
Q ss_pred cccCCCCcEEEEEecC---CCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 341 TLNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spd---g~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
..+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+.. .+.+|...|++++|+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLDVCWS 95 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEEEEEC
T ss_pred ccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEEEEEC
Confidence 3459999999999999 47 599999999999999998 444321 367899999999999
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEE--cCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 494 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 494 (1101)
|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEec
Confidence 999999999999999999999987554 5679999999999 88888 799999999999999999999999986
Q ss_pred cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC--CCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 495 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 495 h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
|. .+.++.+. . ..+++++.++.+++|+++.......... .......+.+.++... .
T Consensus 170 ~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 227 (368)
T 3mmy_A 170 PE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------------K 227 (368)
T ss_dssp SS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------------C
T ss_pred CC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------------C
Confidence 65 55555543 3 4788899999999999987554332211 1222233332222210 0
Q ss_pred CCEEEEEeCCCcEEEEECCCC---ceeEEEcCCCCC----------CCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...+++++.||.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 122999999999999999987 556666655321 15899999999999999999999999998876
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4.4e-30 Score=293.99 Aligned_cols=254 Identities=15% Similarity=0.218 Sum_probs=203.1
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-CCCeEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 424 (1101)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|++++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 45567999999887777889999999999966433210 1124789999999999999 9999999
Q ss_pred EEcCCeEEEEEccCCcee----eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--cCcccC
Q 001318 425 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 498 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 498 (1101)
|+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987421 223367899999999999999843 7999999999999999999999999 889999
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
|.+++|++ ++.+|++++.||.|++||+++++....+ ..+... .+..+.|+|++.+++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--------------------RPVHAVFVSEGKILT 236 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS--------------------SCCEEEECSTTEEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC--------------------cceEEEEcCCCcEEE
Confidence 99999864 6689999999999999999987666555 344332 244455555556788
Q ss_pred EE---eCCCcEEEEECCCCce-eEEEcCCCCCCCcCeEEEccCCCEEEE-EeCCCcEEEEEecCcc
Q 001318 578 AA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGI 638 (1101)
Q Consensus 578 ~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~ 638 (1101)
+| +.|+.|++||+.+++. +.... ..+...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 88 7899999999998765 33333 223346899999999999975 5579999999998773
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=288.06 Aligned_cols=256 Identities=16% Similarity=0.206 Sum_probs=208.2
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+..+ +.+. .+.+|...|++++|+|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp EEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred ecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence 3469999999999999995 999999999999999743 3332 37789999999999987
Q ss_pred --CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 419 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 419 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~ 143 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 143 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence 999999999999999999998622 33357789999999999999 77 79999999999999999874 44567
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|++.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---- 219 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 219 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC----
Confidence 7899999999997632 5689999999999999999876533 23444555555555555410
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.+++|++++.||.|++||+.++. ....+....+...|.+++|+|++++|++++.||.|++|++
T Consensus 220 --------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 220 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred --------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence 04689999999999999998875 2333333345567999999999999999999999999999
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
..+
T Consensus 286 ~~~ 288 (379)
T 3jrp_A 286 NLE 288 (379)
T ss_dssp EET
T ss_pred CCC
Confidence 865
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1e-28 Score=276.69 Aligned_cols=255 Identities=13% Similarity=0.116 Sum_probs=209.4
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecC-CCcEEEEEeccCeEEEEEe
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~ 876 (1101)
+|...|++++|+|++++|++++ ||.|++||+.++ +....+.+|...|++++|+|. ++++|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 3999999999999999999999 899999999876 466778899999999999984 4899999999999999999
Q ss_pred ecc---------eEeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceee----ecC-CCCCCCCC
Q 001318 877 RVD---------EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFL----QIP-TGRTPTAQ 940 (1101)
Q Consensus 877 ~~~---------~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~----~~~-~~~~~~~~ 940 (1101)
.++ +.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||+.+++....... ... ........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 886 667888999999999999999 99999999999999999988764332111 000 01111225
Q ss_pred CCeEEEEcCC---CcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC----CEEEEEEcCCeEEEEEcC
Q 001318 941 SDTRVQFHQD---QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 941 ~v~~~~~s~d---g~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg----~~l~s~s~dg~v~vwd~~ 1012 (1101)
.+.+++|+|+ +.++++ +.++.+.+|+...++........+|...|++++|+|++ ++|++++.||.|++||+.
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 7899999997 888888 57788888887777664444445899999999999998 899999999999999998
Q ss_pred Cc----------------------------------------------eeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 1013 NL----------------------------------------------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 1013 ~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
++ +.+..+. +|... |. +++|+| +
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~-v~--~~~~s~-~ 317 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DHNGE-VW--SVSWNL-T 317 (351)
T ss_dssp ECC---------------------------------------CCSEEEEEEEEEC-------TTSSC-EE--EEEECS-S
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------ccccc-EE--EEEEcC-C
Confidence 75 3333332 33233 55 899999 6
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|++++.||.|++|++.+++
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTS
T ss_pred CCEEEEecCCCcEEEEecCcCc
Confidence 8999999999999999999876
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4e-29 Score=286.03 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=226.4
Q ss_pred EEEEEcCCCceEEe-eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec-CCCE
Q 001318 742 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 819 (1101)
Q Consensus 742 ~~l~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~ 819 (1101)
..++++|+...+++ ++.+|.|++|++.... ..........+|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~---------------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTG---------------------RVDKNVPLVCGHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCE---------------------ECCTTCCCBCCCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCC---------------------CCCCCCceEecCCCCEEEEEeCCCCCCE
Confidence 35788888776554 6779999999974321 11000011123899999999999 9999
Q ss_pred EEEEe-CCeEEEEECCCC-------ceeeEecCCCCCeEEEEEecCCC-cEEEEEeccCeEEEEEeecceEeeee--cCc
Q 001318 820 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 888 (1101)
Q Consensus 820 la~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h 888 (1101)
|++++ ||.|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 899999999987 66788999999999999999 65 79999999999999999999999999 889
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecC-CCCCCCCCCCeEEEEcCCCcEEEEE----eCCeEE
Q 001318 889 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA 963 (1101)
Q Consensus 889 ~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~----~d~~v~ 963 (1101)
.+.|++++|+|++++|++++.|+.|++||+.+++. .... .+|.. ..+..++|+|++++++++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999999999999999999999998653 2222 33332 247999999999999997 689999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEE-EEcCCeEEEEEcCCcee-eeecCCCcccCCCCCCCCccceEEE
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s-~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
+||+.+++.........|...+.+++|+||+++|++ ++.||.|++||+.+++. +..+... . | ...+. +++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~---~-~~~v~--~~~ 320 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--S---S-KESQR--GMG 320 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--C---C-SSCCS--EEE
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--c---c-CCccc--ceE
Confidence 999998765222222256778999999999999875 55799999999999874 4433311 0 1 22255 899
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
|+| ++.++++ .|+.+++|++.+++
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred Eec-cccccee--cceeEEEEEcCCCc
Confidence 999 6677664 57799999998876
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-29 Score=281.36 Aligned_cols=252 Identities=12% Similarity=0.070 Sum_probs=207.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCC--CcEEEEEeccCeEEEEEeec
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~ 878 (1101)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 8999999998 6677888999999999999997 5 89999999999999999999
Q ss_pred ce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC-----
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 949 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----- 949 (1101)
++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.++....... ..++. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 9999999999999999998864332222 22333 4799999999
Q ss_pred --------CCcEEEE-EeCCeEEEEEcCCceee--eeccCCCCCCCeeEEEEcCC---CCEEEEEEcCCeEEEEEcCCce
Q 001318 950 --------DQIHFLV-VHETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 950 --------dg~~la~-~~d~~v~vwd~~~~~~~--~~~~~~~h~~~i~~l~~spd---g~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
++.++++ +.|+.|++||+.++... ......+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899988 58999999999876432 11123478999999999999 8999999999999999999874
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
........ ...+| ...+. +++|+| ++++|++++.||.|++|++..+.
T Consensus 243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 21111100 01111 22255 899999 78999999999999999998543
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-27 Score=277.10 Aligned_cols=320 Identities=15% Similarity=0.190 Sum_probs=238.0
Q ss_pred CeEEEE---EecCCCeEEEE--------------EcCCeEEEEEcc--CCceeeeeeeeccccCCeeEEEEcCCCCeEEE
Q 001318 409 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 469 (1101)
Q Consensus 409 ~V~~l~---~spdg~~las~--------------~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l 469 (1101)
.+..++ |+|+++.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455666 66666655543 333433555443 342 2222234444 4567999999555 78
Q ss_pred EEecCCCcEEEEeCCCCceEE-----EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCcee
Q 001318 470 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 544 (1101)
Q Consensus 470 ~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 544 (1101)
++++.|+.|++||+.+++.+. .+.+|.+.|.+++| .+++.++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 889999999999999999887 44578889999998 45668999999999999999998777776666666666
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
+++|+|++ +.++ +++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++++
T Consensus 216 ~~~~~~~~---------------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIR---------------------DLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTT---------------------TEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCC---------------------CEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 66665555 4564 55589999999999999888876543 48899999999999988
Q ss_pred e--------CCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcc
Q 001318 624 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 695 (1101)
Q Consensus 624 ~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1101)
+ .||.|++||+.++ +....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~-~~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKE-KLIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTT-EEEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCC-cEEeec---------------------------------------------------
Confidence 7 3566777765543 110000
Q ss_pred ccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCC
Q 001318 696 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 775 (1101)
Q Consensus 696 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~ 775 (1101)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeEecCCCCCeEEEE
Q 001318 776 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 853 (1101)
Q Consensus 776 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 853 (1101)
.+...+.+++|+|++++++++ + ++.|++||+.+++.+..+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 012235667788888755444 4 7889999999888887776 667799999
Q ss_pred EecCCCcEEEEEec---------------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEe
Q 001318 854 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 917 (1101)
Q Consensus 854 ~sp~d~~~lasg~~---------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd 917 (1101)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888876 579999999999988888764 57899999999999998875 99999999
Q ss_pred CCC
Q 001318 918 SDG 920 (1101)
Q Consensus 918 ~~~ 920 (1101)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 864
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=9.8e-29 Score=284.91 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=212.5
Q ss_pred eeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 338 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 338 ~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+...... ..........+.+|...|++++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 4567789999999999998655799999999999999976211000 0000001114779999999999999
Q ss_pred CCC-eEEEEEcCCeEEEEEccCCce----eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC---ceE
Q 001318 418 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 489 (1101)
Q Consensus 418 dg~-~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 489 (1101)
++. +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2224457789999999999995444 7999999999999999987 577
Q ss_pred EEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 490 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 490 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999975432 47999999999999999984 45666677777777777777664
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC--------------CceeEEEcCCCCCCCcCeEEEccCCC-EEEEEeCCCcEEEEE
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 633 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~ 633 (1101)
.++++++.|+.|++||+.. .+.+..+..| ...|.+++|+|+++ +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 4689999999999999987 2445555444 44799999999999 999999999999999
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3e-27 Score=269.54 Aligned_cols=227 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE-EEEEcCCeEEEEEc
Q 001318 358 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 436 (1101)
Q Consensus 358 ~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~ 436 (1101)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|||++| ++++.|++|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887653 44443 58999999999987 56668999999999
Q ss_pred cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEE-EE
Q 001318 437 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 515 (1101)
Q Consensus 437 ~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s 515 (1101)
.+++.+. .+..| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+ ++++.+ ++
T Consensus 62 ~~~~~~~---~~~~~-~~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAG-SSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEE
T ss_pred CCCeEEE---EEECC-CCccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEE
Confidence 9988665 34434 38999999999995 4467778899999999999998888754 467888885 455656 78
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE-EEEeCCCcEEEEECCCCc
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 594 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 594 (1101)
++.|+.|++||+.+++....+..+. .+ ..++|+|+++.+ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~---------------------~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVGR-SP---------------------KGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCS-SE---------------------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecCC-Cc---------------------ceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 8889999999998866555444322 23 345555555566 567789999999999999
Q ss_pred eeEEEcCCCCCCCcCeEEEccCCCEEEEEe---CCCcEEEEEecCc
Q 001318 595 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 637 (1101)
Q Consensus 595 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~ 637 (1101)
.+..+.... .+.+++|+|++++|++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888876433 578899999999999888 6899999998766
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-27 Score=251.19 Aligned_cols=294 Identities=15% Similarity=0.122 Sum_probs=210.1
Q ss_pred CeeEEEEc-CCCCeEEEEEecCCCcEEEEeCCCC---ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCC
Q 001318 454 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 529 (1101)
Q Consensus 454 ~V~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~ 529 (1101)
.+.++-|- +..+...+++++. ..|++|+..++ ++++++.+|..+|..+.+.++.-+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35556663 4556656777775 69999999999 8999999999999999987655432222221
Q ss_pred CCceeeecCCCCceeEEEEccC----CceEEeccccCceeEEEEcCCCCEEEEEe--CCCcEEEEEC-CCCceeEEEcCC
Q 001318 530 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD 602 (1101)
Q Consensus 530 ~~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~ 602 (1101)
..+...|.+++++|+ ++.+..+.+. +.+..+ ++++.+.+++ .|+.|++|++ .+++.+..+..+
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred -------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 112345788999999 7766665544 334444 5666555544 6999999999 558888887766
Q ss_pred CCCCCcCeEEEcc---CCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 603 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 603 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------ 224 (356)
T 2w18_A 178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------ 224 (356)
T ss_dssp CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence 55 678899999 7899999999999999999998 55555543211
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
+...+.+++|+|+|..+++++.+
T Consensus 225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence 22356788999999887776654
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCce
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 838 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 838 (1101)
.. +| .+++|+ |++|++||..+++.
T Consensus 248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence 21 12 356777 89999999999988
Q ss_pred eeEe-----cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCee-EEEEcCCCCEEEEEeCCCc
Q 001318 839 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 839 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~D~~ 912 (1101)
+..+ .+|...+.+. +. ++.++|+|+.||+|+|||+.+++++.++.+|...+. .++|||||++|++|+.|++
T Consensus 273 l~v~~~~~p~Gh~~~~lsg--~~-sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T 349 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEG--DV-KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349 (356)
T ss_dssp EEEEEECCCTTCCCCEEEE--EE-ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred EEEEEeeccCCCcceeEcc--cc-CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 7765 3666554433 33 467999999999999999999999999999988766 5899999999999999999
Q ss_pred eEEEeC
Q 001318 913 LCVWSS 918 (1101)
Q Consensus 913 v~iwd~ 918 (1101)
|+|||+
T Consensus 350 IklWd~ 355 (356)
T 2w18_A 350 IFVYHY 355 (356)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999985
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-29 Score=306.70 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=205.6
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCc--ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
..+|.+.|++++|+|+|++ +++|+.||.|+|||+.++ +.+. .+.+|.+.|++++|+|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (753)
T ss_dssp ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence 4469999999999999995 999999999999999843 3322 47899999999999998
Q ss_pred --CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCC--CCeEEEEEecCCCcEEEEeCCCCc--eEEEe
Q 001318 419 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF 492 (1101)
Q Consensus 419 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~ 492 (1101)
+++|++|+.||+|++||+.+++. .....+.+|...|++++|+|+ +. ++++|+.||.|++||+.++. ....+
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~ 141 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII 141 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence 99999999999999999998762 233367889999999999999 88 79999999999999998873 44567
Q ss_pred cCcccCeEEEeeeecC-----------CccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEe
Q 001318 493 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 557 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~-----------~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~ 557 (1101)
.+|...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---- 217 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC----
Confidence 8899999999997631 4679999999999999999876432 33445555555555544410
Q ss_pred ccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 558 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
.++++++++.||.|++||+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++
T Consensus 218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (753)
T ss_dssp --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence 0468999999999999999886421 11222334557999999999999999999999999999
Q ss_pred cCc
Q 001318 635 SDG 637 (1101)
Q Consensus 635 ~~~ 637 (1101)
..+
T Consensus 284 ~~~ 286 (753)
T 3jro_A 284 NLE 286 (753)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.5e-28 Score=271.14 Aligned_cols=294 Identities=14% Similarity=0.173 Sum_probs=203.6
Q ss_pred ccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEe
Q 001318 403 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 482 (1101)
Q Consensus 403 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd 482 (1101)
...|...|++++|||||++||+|+.++ ++|||+.+++.... .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998775 78999987654431 22235888999998884 446788899999999
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
+.+++++..+. |...|.+++++ ++ .++.+ .|+.|++||+.+. +....+..
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~--~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~----------------------- 138 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLS--RE--FIVVS-YGDVISVFKFGNPWKRITDDIR----------------------- 138 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEEC--SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE-----------------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEc--CC--EEEEE-EcCEEEEEECCCCceeeEEecc-----------------------
Confidence 99999999887 66789988874 32 33333 3678888888764 22211100
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEE--EeCCCcEEEEEecCccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV--STNDNGIKILATSDGIR 639 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iw~~~~~~~ 639 (1101)
....+++++ .++++ |+.+|.|++||+.++..
T Consensus 139 ---------------------------------------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 139 ---------------------------------------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ---------------------------------------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred ---------------------------------------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 001123333 34444 45677777777665411
Q ss_pred cccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecc
Q 001318 640 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 719 (1101)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~ 719 (1101)
. .....
T Consensus 172 ~-~~~~~------------------------------------------------------------------------- 177 (355)
T 3vu4_A 172 A-TTQDQ------------------------------------------------------------------------- 177 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-ccccc-------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred ccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccccc
Q 001318 720 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~ 799 (1101)
......+.| .+. .+
T Consensus 178 --------------------~~~~~~~~p------------~~~----------------------------------~~ 191 (355)
T 3vu4_A 178 --------------------GVQQKAILG------------KGV----------------------------------LI 191 (355)
T ss_dssp -----------------------------------------CCE----------------------------------EE
T ss_pred --------------------cccccccCc------------ccE----------------------------------EE
Confidence 000000000 000 01
Q ss_pred CCCCCCCCeeEEEEecCCCEEEEEe-CCe-EEEEECCCCceeeEec-C-CCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 800 TDSNPEEAVPCFALSKNDSYVMSAS-GGK-ISLFNMMTFKTMATFM-P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 800 ~~~~~~~~i~~~~~s~dg~~la~~s-dg~-i~vwd~~~~~~~~~~~-~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
. +|...|.+++|+|+|++|++++ |++ |++||+.+++++.++. + |...|.+++|+| ++++|++|+.|++|+|||
T Consensus 192 ~--~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 192 K--AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp C--CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred E--ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 1 2888999999999999999999 898 9999999999999998 5 999999999999 999999999999999999
Q ss_pred eecceEe--eeec---------------------CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcc
Q 001318 876 VRVDEVK--SKLK---------------------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 922 (1101)
Q Consensus 876 ~~~~~~~--~~l~---------------------~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~ 922 (1101)
+..+... ..+. .+......++|++||++|++++.||.+++|++..++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 9764211 1111 112234679999999999999999999999987754
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.6e-27 Score=267.34 Aligned_cols=329 Identities=8% Similarity=0.088 Sum_probs=242.1
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.++++++.|+.|++||+.+++.+. .+.+| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~-~~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecC-CCcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888899999999999987665 45555 45899999999994 45788899999999999999999888655 89
Q ss_pred EEEeeeecCCccEE-EEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE-E
Q 001318 500 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 577 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 577 (1101)
.+++|+ +++++| ++++.++.|++||+.+++....+..+ ..+ ..++|+|+++.+ +
T Consensus 77 ~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~---------------------~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSP---------------------LGLALSPDGKKLYV 132 (391)
T ss_dssp EEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSE---------------------EEEEECTTSSEEEE
T ss_pred cceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCc---------------------ceEEECCCCCEEEE
Confidence 999985 455666 45556799999999987655544332 223 445555555556 6
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77889999999999999988887543 36889999999987 56778899999998665 1111000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223455667777
Q ss_pred CCEEEEEe----CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceEeeeecCcccC
Q 001318 817 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 891 (1101)
Q Consensus 817 g~~la~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~ 891 (1101)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 77666654 5789999999888888887654 588999999 77666 67788999999999999998888776554
Q ss_pred ee---EEE------------EcCCC----------CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 892 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 892 V~---~l~------------~s~dg----------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
.. .+. |+.+. ..+...+.|.++++|++..+... .. ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence 21 122 22221 34666677899999999875421 11 113467
Q ss_pred EcCCCcEEEE
Q 001318 947 FHQDQIHFLV 956 (1101)
Q Consensus 947 ~s~dg~~la~ 956 (1101)
|+++|.+.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999998875
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=277.53 Aligned_cols=258 Identities=15% Similarity=0.068 Sum_probs=200.5
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcc---eeEeeeeeeeecCCC---------------------------
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC--------------------------- 394 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~--------------------------- 394 (1101)
..++.+++|+|||++ |+++ .++.|++||+.+++ .+.. |.....
T Consensus 4 ~~p~~~v~~s~dg~~-l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSL-VFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp ECCCCEEEECSSSSE-EEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC----------------------------
T ss_pred cccEEEEEecCCCCE-EEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccc
Confidence 357899999999994 5554 46899999999998 4332 221100
Q ss_pred -------------CcccccccccCCCCCeEEEEEecCCCeE-EEEEcCCeEEEEEcc--CCceeeeeeeeccccCCeeEE
Q 001318 395 -------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDI 458 (1101)
Q Consensus 395 -------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~~ 458 (1101)
..........+|.+.|++++|+|||++| ++|+.||.|+|||+. +++.+..+. ...|...|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~ 155 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAI 155 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEE
Confidence 0000111234677799999999999996 889999999999999 777665322 13577899999
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCceEE----EecCcccCeEEEeeeec-CCccEEEEEecCCcEEEEecCCCCce
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~ 533 (1101)
+|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++...
T Consensus 156 ~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 156 SIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999 79999999999999998887554 77889999999999765 22679999999999999999987766
Q ss_pred ee-ecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCC----------
Q 001318 534 VD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------- 602 (1101)
Q Consensus 534 ~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 602 (1101)
.. +..|...|.+++|+ + +++|++++.|+.|++||+.+++.+..+..+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d---------------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-K---------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp EEECCCCSSCEEEEEEC-S---------------------TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred eeeecCCCCceEEEEEC-C---------------------CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 55 34566656655555 4 458999999999999999999988887632
Q ss_pred -------------CCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEe
Q 001318 603 -------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 634 (1101)
Q Consensus 603 -------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~ 634 (1101)
.....|.+++|+|++++|++++ .++.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1223578999999999999999 8999999998
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.5e-28 Score=279.17 Aligned_cols=267 Identities=10% Similarity=-0.031 Sum_probs=186.7
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec-----
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 417 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 417 (1101)
.|...+....+++++. ++|+|+.|++|+|||+.+++......+. .+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence 4555555666666776 5999999999999999988765432222 5889999999999998
Q ss_pred ---CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe--
Q 001318 418 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 492 (1101)
Q Consensus 418 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 492 (1101)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876554 46678899999999999865 7999999999999999987654322
Q ss_pred -----------------------cCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc
Q 001318 493 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 549 (1101)
Q Consensus 493 -----------------------~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 549 (1101)
.+|...|.++.|. .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 3577788888875 4677899999999999999999888777777787788888888
Q ss_pred cCCceEEeccccCceeEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 550 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
++++.... ....+..+.+.+.+. ++++|+.||.|++||+.+++.+..+..+.. .|.+++|+|||++||+++.+|
T Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence 87643211 112233333333334 556678899999999999988877765544 799999999999999998765
Q ss_pred EEEEEe
Q 001318 629 IKILAT 634 (1101)
Q Consensus 629 i~iw~~ 634 (1101)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 666654
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=8.2e-28 Score=253.25 Aligned_cols=274 Identities=10% Similarity=0.135 Sum_probs=200.9
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
-+....+..|++|+......-.....+ ..|..+|..+.+.||...|++..-.+
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~----------------------- 108 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN----------------------- 108 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS-----------------------
T ss_pred EEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc-----------------------
Confidence 344444589999998874222333333 44778999999999877665443221
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecC----CCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d----g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
-+...|.+++++|| ++++++++ ..+++|++. ++
T Consensus 109 -------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------~g 145 (356)
T 2w18_A 109 -------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------KR 145 (356)
T ss_dssp -------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------TT
T ss_pred -------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------CC
Confidence 05567899999999 89999877 347777543 45
Q ss_pred cEEEEEe--ccCeEEEEEee-cceEeeeecCcccCeeEEEEcC---CCCEEEEEeCCCceEEEeCCCcccccceeeecCC
Q 001318 860 NIIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 860 ~~lasg~--~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
+++.+++ .|+.|++|++. +++.+..+.+|...++.++|++ ++.+||+++.|++|+|||+++++. +..+.
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~tL~ 220 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKKMH 220 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEEEE
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEEEc
Confidence 5555533 57777788773 4777777889999999999999 789999999999999999999764 23333
Q ss_pred CCCCCCCCCeEEEEcCCCcEEE------------E-EeCCeEEEEEcCCceeeeecc---CCCCCCCeeEEEEcCCCCEE
Q 001318 934 GRTPTAQSDTRVQFHQDQIHFL------------V-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLV 997 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~s~dg~~la------------~-~~d~~v~vwd~~~~~~~~~~~---~~~h~~~i~~l~~spdg~~l 997 (1101)
++......+.+++|+|+|++++ + +.|++|++||..+++++..+. +.+|...+.+..++ +.++
T Consensus 221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~l 298 (356)
T 2w18_A 221 IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCA 298 (356)
T ss_dssp CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEE
T ss_pred CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEE
Confidence 3322224678889999999874 3 367899999999999876652 35776666555554 8899
Q ss_pred EEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 998 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 998 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
++++.|++|+|||+.+|+++.++. +|....+. .++|+| |+++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecC
Confidence 999999999999999999999887 44343333 589999 7899999999999999996
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-27 Score=275.03 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=201.5
Q ss_pred CCCCeeEEEEecCCCEE-EEEe-CCeEEEEECC--CCceeeEec--CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~l-a~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66789999999999996 7887 8999999999 888888876 5678899999999 89999999999999999998
Q ss_pred cceEee----eecCcccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 878 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 878 ~~~~~~----~l~~h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+++... .+.+|.+.|++++|+|+ +++|++++.|++|++||+.+++.. .....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-C
Confidence 877554 78889999999999999 999999999999999999876532 22244554 489999999 9
Q ss_pred CcEEEE-EeCCeEEEEEcCCceeeeeccCC-----------------------CCCCCeeEEEEcCCCCEEEEEE-cCCe
Q 001318 951 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1005 (1101)
Q Consensus 951 g~~la~-~~d~~v~vwd~~~~~~~~~~~~~-----------------------~h~~~i~~l~~spdg~~l~s~s-~dg~ 1005 (1101)
+++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 58999999999999987776421 2245799999999999999999 8999
Q ss_pred EEEEEc--CCc---eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-------CCcEEEEeccCCCcccc
Q 001318 1006 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1006 v~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-------dg~v~vW~~~~~~~~~~ 1072 (1101)
|+||++ .++ +.+..+. ++ ..+. +++|+| + .++++.+. +..|.+|.+....+.|.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 999999 665 5555555 21 1244 899999 4 45555433 55689998876655553
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4e-28 Score=275.74 Aligned_cols=348 Identities=13% Similarity=0.108 Sum_probs=210.2
Q ss_pred CCCcEEEEE---ecCCCeEEEEEecCCcEEEEeCCCcce-----eEeeeeeeeecCCCCc-----ccccccccCCCCCeE
Q 001318 345 GSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSVN 411 (1101)
Q Consensus 345 ~~~v~~~~~---spdg~~llatg~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 411 (1101)
+....++.| +|++..++++| .|+.|.+|+...... .....+..+....... +........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 45666555555 578899998643211 1111112222111100 001112345566666
Q ss_pred EEEEecCCCeEEEEEcCCeEEEEEccCCceee--eeeeeccccCCeeEEEEcC--------CCCeEEEEEecCCCcEEEE
Q 001318 412 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 412 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~V~~~~~s~--------d~~~~~l~s~~~d~~i~iw 481 (1101)
...+++++.+||+++.|++|+|||..+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 67777889999999999999999999886543 2345789999999999998 777 89999999999999
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecccc
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 561 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~ 561 (1101)
|+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.++........+.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------- 235 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------- 235 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC---------------
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------
Confidence 999999888888899999999997543 2589999999999999998866544332221111000
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCCCcEEEEEecCcccc
Q 001318 562 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRL 640 (1101)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~ 640 (1101)
.++...... .......++...+.++.|+ ++++.|++++.|+++++||+..+ ..
T Consensus 236 --------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~ 289 (393)
T 4gq1_A 236 --------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-ND 289 (393)
T ss_dssp --------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred --------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CC
Confidence 011100000 0011112334468889987 79999999999999999998776 32
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+..
T Consensus 290 ~~~l~~-------------------------------------------------------------------------- 295 (393)
T 4gq1_A 290 YNEISD-------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEee--------------------------------------------------------------------------
Confidence 222221
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
+...+..+.+.++++.+..
T Consensus 296 ----------------~~~~~~~~~~~~~~~~~~~--------------------------------------------- 314 (393)
T 4gq1_A 296 ----------------STMKLGPKNLLPNVQGISL--------------------------------------------- 314 (393)
T ss_dssp ------------------------CCSCSEEEECS---------------------------------------------
T ss_pred ----------------ecCccccEEEccccccccc---------------------------------------------
Confidence 1122222333333221110
Q ss_pred CCCCCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEee
Q 001318 801 DSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 801 ~~~~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~ 877 (1101)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+.+|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus 315 ---~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 ---FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ---SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred ---cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 111122222223 344566677 89999999999999988888999999999999 999999998766 6666553
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.1e-26 Score=269.06 Aligned_cols=237 Identities=12% Similarity=0.135 Sum_probs=194.6
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~ 881 (1101)
|...+.+++|+++++++++++ |+.|++||+.+++.+..+..|...+.+++|+| +++++ ++++.|+.|++||+.+++.
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE
Confidence 566778888888888888887 79999999999999999988999999999999 77666 5555899999999999998
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEe--------CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSG--------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s--------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
+..+..+. .+.+++|+|+|++|++++ .|+.|++||+.+++..... . +. ..+..++|+|+++.
T Consensus 247 ~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~----~~---~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 247 IRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--G----PP---GNKRHIVSGNTENK 316 (433)
T ss_dssp EEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--E----EE---ECEEEEEECSSTTE
T ss_pred EEEecCCC-CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--c----CC---CCcceEEECCCCCE
Confidence 88887654 599999999999999988 5889999999986542221 1 11 25688999999986
Q ss_pred EEE--EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc---------------CCeEEEEEcCCcee
Q 001318 954 FLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL---------------DATVCVFSAANLKL 1016 (1101)
Q Consensus 954 la~--~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~---------------dg~v~vwd~~~~~~ 1016 (1101)
+++ +.++.|++||+.+++.+..+. +...+.+++|+|||++|++++. ||.|++||+.+++.
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 655 378999999999998887764 4678999999999999988876 57999999999999
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~~ 1066 (1101)
+..+.. + ..+..++|+| |+++|++++. |+.|++|++..
T Consensus 394 ~~~~~~------~-----~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEA------G-----NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEC------S-----SSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecC------C-----CCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 887761 1 1234899999 6788887764 99999999863
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=8.3e-27 Score=260.86 Aligned_cols=295 Identities=10% Similarity=0.123 Sum_probs=206.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEE-EEEeCCCcEEEEEecCccccc
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
.+.+++|+|+|++|++|+.+ .+++|++.+++........ .+..+++.++++.+ ++++.|++|++||..++ +.+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~ 94 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDV 94 (355)
T ss_dssp CCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEE
T ss_pred ceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEE
Confidence 44445555555678877766 4789999988776655422 37779999988887 46777899999998877 322
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+.
T Consensus 95 ~~~~---------------------------------------------------------------------------- 98 (355)
T 3vu4_A 95 SRIK---------------------------------------------------------------------------- 98 (355)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
+...|.++.|+++. +++ +.++.+++|++.... ..+.. +
T Consensus 99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~-- 136 (355)
T 3vu4_A 99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D-- 136 (355)
T ss_dssp ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C--
T ss_pred ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e--
Confidence 33467888888765 333 347789999874320 11110 0
Q ss_pred CCCCCCeeEEEEecCCCEEEEE--e-CCeEEEEECCCCc----------------eeeEecCCCCCeEEEEEecCCCcEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNII 862 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~l 862 (1101)
......+++++ .+++++ + +|.|++||+.++. ++..+.+|...|++++|+| ++++|
T Consensus 137 ---~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l 210 (355)
T 3vu4_A 137 ---IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMV 210 (355)
T ss_dssp ---EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEE
T ss_pred ---ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEE
Confidence 11344566777 677764 4 7999999999865 2788999999999999999 99999
Q ss_pred EEEeccCe-EEEEEeecceEeeeec-C-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 863 AIGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 863 asg~~dg~-v~vwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
|+|+.||+ |+|||+.+++++..+. + |.+.|++++|+|||++|++++.|++|++||+..+.......+. +
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~---~----- 282 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK---G----- 282 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT---T-----
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc---c-----
Confidence 99999998 9999999999999998 5 9999999999999999999999999999999875322211110 0
Q ss_pred CCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ +.|. ++ .. .|... ...+. ..+......++|++||++|++++.||.+++|++..++
T Consensus 283 --~----~~~~--~~--~~-----~~~~~----~~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 283 --W----INMK--YF--QS-----EWSLC----NFKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp --T----EECC--CC--CC-----SSCSE----EEECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred --e----eecc--cc--cc-----cccee----EEEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0 0000 00 00 01110 00111 1223345779999999999999999999999987654
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9e-28 Score=267.95 Aligned_cols=198 Identities=12% Similarity=0.072 Sum_probs=158.3
Q ss_pred CCCCeeEEEEec--CCCEEEEEe-CCeEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 804 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 804 ~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
|...|.+++|+| +++++++++ ||+|++||+.+++....... +...+++++|+| ++.+||+|+.||.|+|||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 99999999999998777644 455799999999 9999999999999999999999
Q ss_pred eEe-eeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCC--eEEEEcCCCcEEE
Q 001318 880 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 955 (1101)
Q Consensus 880 ~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~dg~~la 955 (1101)
+.+ ..+.+ |.++|++++|+|+|.+|++++ |++|++||+.+++... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 4599999999865321 1111111111 22 4699999999999
Q ss_pred E-Ee-CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC---CCCEEEEEEcCCeEEEEEcCCc
Q 001318 956 V-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 956 ~-~~-d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp---dg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
+ +. |+.+++|++.+....... .++..++|++ +++.|++++.||.++++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 9 44 999999999765432221 4677889998 9999999999999998865443
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=295.06 Aligned_cols=251 Identities=12% Similarity=0.073 Sum_probs=209.5
Q ss_pred CCCCCeeEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeEecCCCCCeEEEEEecCC--CcEEEEEeccCeEEEEEee
Q 001318 803 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 877 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~ 877 (1101)
+|.+.|++++|+|+++++++|+ ||.|++||+. +++....+.+|...|++++|++ + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 3999999999999999999998 9999999998 5677888999999999999998 6 8999999999999999999
Q ss_pred cce--EeeeecCcccCeeEEEEcCC--CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC----
Q 001318 878 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 949 (1101)
Q Consensus 878 ~~~--~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---- 949 (1101)
+++ .+..+.+|...|++++|+|+ +.+|++++.||+|++||+.++....... ..+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCC---CceEEEEecCcccc
Confidence 986 77888999999999999999 9999999999999999998864332222 22333 4799999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEEcCCc----eeeeeccCCCCCCCeeEEEEcCC---CCEEEEEEcCCeEEEEEcC
Q 001318 950 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 950 ---------dg~~la~-~~d~~v~vwd~~~~----~~~~~~~~~~h~~~i~~l~~spd---g~~l~s~s~dg~v~vwd~~ 1012 (1101)
++.++++ +.|+.|++||+.++ .....+ .+|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 58999999999877 344444 378999999999999 8999999999999999999
Q ss_pred CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1013 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+++........ ...+| ...+. +++|+| +++++++++.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532221111 11122 22355 899999 78999999999999999998654
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-27 Score=261.84 Aligned_cols=280 Identities=8% Similarity=0.061 Sum_probs=214.5
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecC
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 538 (1101)
.+.+++. ++++|+.|++|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 3445666 79999999999999999999988886 566777777543 99999999999997642
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc--C
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 616 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~ 616 (1101)
.+.+|++.+++.+..+.. .+...|.+++|+| +
T Consensus 105 ---------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 105 ---------------------------------------------QITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN 138 (343)
T ss_dssp ---------------------------------------------EEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred ---------------------------------------------ceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence 467899988887776652 2334699999999 9
Q ss_pred CCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccc
Q 001318 617 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 696 (1101)
Q Consensus 617 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1101)
++++++++.||+|++||+.++ +......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~-~~~~~~~--------------------------------------------------- 166 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDD-SQYIVHS--------------------------------------------------- 166 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSS-CEEEEEC---------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCC-cEEEEEe---------------------------------------------------
Confidence 999999999999999999877 2221110
Q ss_pred cccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCC
Q 001318 697 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 776 (1101)
Q Consensus 697 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 776 (1101)
..+...|.+++|+|++.++++++.||.|++||+..
T Consensus 167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~------- 201 (343)
T 3lrv_A 167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS------- 201 (343)
T ss_dssp --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence 01344688999999999999999999999998743
Q ss_pred ceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecC---CCCCeE--E
Q 001318 777 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F 851 (1101)
Q Consensus 777 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~ 851 (1101)
+......+. .+|...|.+++|+|++.+|++++++.|++||+.+++.+..+.. |...+. +
T Consensus 202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222201111 1388999999999999999999977999999999887666554 333443 6
Q ss_pred EEEecCCCcEEEEEec-cCeEEEEEeecceEeeeecCcccCeeEEEEcC---CCCEEEEEeCCCceEEEeCCC
Q 001318 852 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +++.|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 9999999998 999999999765422222 5678889998 889999999999999885443
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.4e-26 Score=266.86 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=173.5
Q ss_pred cccCCCCCeEEEEEecC-CCeEEEEEcCCeEEEEEccCC-------ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEec
Q 001318 402 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 402 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
....|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|++++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 46789999999999997 789999999999999999862 112333467899999999999999886 699999
Q ss_pred CCCcEEEEeCCCCce-------EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCC---CceeeecCCCCce
Q 001318 474 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 543 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v 543 (1101)
.||.|++||+.++.. ...+.+|...|.+++|++. ++.+|++++.||.|++||+++. .....+..|...+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4567789999999999763 3479999999999999999976 3445555666666
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCC-EEE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 621 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 621 (1101)
.+++|+|++. ..+++|+.||.|++||+++ +..+..+..+. ..|.+++|+|+++ +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEE
Confidence 6666665554 3688999999999999998 56778887654 4799999999885 799
Q ss_pred EEeCCCcEEEEEecCc
Q 001318 622 VSTNDNGIKILATSDG 637 (1101)
Q Consensus 622 ~~~~dg~i~iw~~~~~ 637 (1101)
+++.||.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=5.7e-26 Score=267.08 Aligned_cols=332 Identities=12% Similarity=0.105 Sum_probs=244.8
Q ss_pred EcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEec--CCCCceeeec
Q 001318 460 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE 537 (1101)
Q Consensus 460 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~--~~~~~~~~~~ 537 (1101)
|+|++. ++++++.|++|.+||..+++++.++..+.. +..++| +++|++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 788886 789999999999999999999999984333 778877 567789999999999999999 5554444433
Q ss_pred CCCCceeEEEEccCCceEEeccccCceeEEEEcC----CCCEEEEEe-CCCcEEEEECCCCceeEEEcCCC---------
Q 001318 538 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG--------- 603 (1101)
Q Consensus 538 ~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--------- 603 (1101)
. ... ...++|+| +|+++++++ .+++|.+||..+++++..+...+
T Consensus 220 ~-g~~---------------------p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 220 I-GIE---------------------ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp C-CSE---------------------EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred c-CCC---------------------cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 2 222 34455566 666788877 58999999999999998887532
Q ss_pred CCCCcCeEEEccCCCE-EEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 604 GLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
....+.++.++|++.. +++...++.|.+||..+... +.
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~---------------------------------------- 316 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT---------------------------------------- 316 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE----------------------------------------
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce----------------------------------------
Confidence 1124677888886654 44556678888888755410 00
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceE
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 762 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 762 (1101)
+..+
T Consensus 317 ----------------------------------------------------------~~~i------------------ 320 (543)
T 1nir_A 317 ----------------------------------------------------------VTSI------------------ 320 (543)
T ss_dssp ----------------------------------------------------------EEEE------------------
T ss_pred ----------------------------------------------------------eEEe------------------
Confidence 0000
Q ss_pred EeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee
Q 001318 763 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA 840 (1101)
Q Consensus 763 ~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~ 840 (1101)
.+...+..++|+|+|+++++++ +++|.+||..+++++.
T Consensus 321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 0122345678899999877665 6899999999999888
Q ss_pred EecC----CCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec-------ceEeeeecCcccCeeEEEEcCCCCEEEEEe
Q 001318 841 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 841 ~~~~----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 908 (1101)
.+.. |.+....+ ++|+++.+++++. .|++|.|||+.+ +++++++.+|.+.+..|+|+|||++|++++
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 8764 54433333 5774577788775 689999999998 899999999999899999999999999987
Q ss_pred -------CCCceEEEeCCCcccccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEE------eCCeEEEEEcCCceee
Q 001318 909 -------ADSQLCVWSSDGWEKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV 973 (1101)
Q Consensus 909 -------~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~------~d~~v~vwd~~~~~~~ 973 (1101)
.+++|.|||+.+++... ..+.+- .+-......+..+.|+|+|+.++++ .++.|.|||..+++++
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKY-QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCC-EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred CCCCCcccCceEEEEECCCCCCCe-EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 27799999999977531 111110 0001111478899999999999874 2689999999999999
Q ss_pred eecc
Q 001318 974 KQWV 977 (1101)
Q Consensus 974 ~~~~ 977 (1101)
..+.
T Consensus 519 ~~i~ 522 (543)
T 1nir_A 519 AVVK 522 (543)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 8876
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.1e-25 Score=264.74 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=242.9
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC--CCCceEE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQY 490 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~ 490 (1101)
+|+|++.++++++.|++|.+||..+++.+. ++. +|. +..++|+|||+ +|++++.|++|++||+ .+++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~---~i~~g~~--~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYA--VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE---EEECSTT--EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE---EEecCcc--cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEE
Confidence 388999999999999999999999998776 344 443 88999999999 7888889999999999 8999998
Q ss_pred EecCcccCeEEEeeee--cCCccEEEEEec-CCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEE
Q 001318 491 IFEGHEAPVYSVCPHH--KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 567 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~--~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 567 (1101)
++.. ...+..++|++ ..+|+++++++. +++|.+||..+.+....+..+...+....|. ....+..+
T Consensus 217 ~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~----------~~~~v~~i 285 (543)
T 1nir_A 217 EIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH----------PEPRVAAI 285 (543)
T ss_dssp EEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE----------SCCCEEEE
T ss_pred EEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc----------cCCceEEE
Confidence 8884 45578888853 006788888874 8999999999887776655422100000011 11134445
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeE--EEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCccccccc
Q 001318 568 QFDTTKN-RFLAAGDDFSIKFWDMDSVQLLT--SIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRT 643 (1101)
Q Consensus 568 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 643 (1101)
.++|++. ++++...++.|.+||+.+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ ++...
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~ 361 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSAL 361 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEe
Confidence 5555444 45566789999999998876544 4432 23578899999999877655 5889999998877 33322
Q ss_pred cccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCC
Q 001318 644 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 723 (1101)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 723 (1101)
+....
T Consensus 362 i~~g~--------------------------------------------------------------------------- 366 (543)
T 1nir_A 362 VDVGK--------------------------------------------------------------------------- 366 (543)
T ss_dssp EECSS---------------------------------------------------------------------------
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 21000
Q ss_pred CccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCC
Q 001318 724 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~ 803 (1101)
..
T Consensus 367 ------------------------------------------------------------------------------~p 368 (543)
T 1nir_A 367 ------------------------------------------------------------------------------TP 368 (543)
T ss_dssp ------------------------------------------------------------------------------SB
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCCCeeEEEEecC-CCEEEEEe--CCeEEEEECCC-------CceeeEecCCCCCeEEEEEecCCCcEEEEEe-------
Q 001318 804 PEEAVPCFALSKN-DSYVMSAS--GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM------- 866 (1101)
Q Consensus 804 ~~~~i~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~------- 866 (1101)
|......+ ++|+ +..++++. |++|.+||+.+ +++++++.+|...+..++|+| ++++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcc
Confidence 21111112 3454 44555553 57888888887 889999999988899999999 999999987
Q ss_pred ccCeEEEEEeecceEe-eee--------cCcccCeeEEEEcCCCCEEEEEe-----CCCceEEEeCCCccc
Q 001318 867 DDSSIQIYNVRVDEVK-SKL--------KGHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK 923 (1101)
Q Consensus 867 ~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~dg~~l~s~s-----~D~~v~iwd~~~~~~ 923 (1101)
.+++|.|||+.+++.. ..+ ..+...+..+.|+|||+.|+++. .|+.|.|||.++++.
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 3789999999988766 443 45678899999999999998763 479999999999764
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=7.2e-24 Score=241.91 Aligned_cols=302 Identities=10% Similarity=0.066 Sum_probs=219.6
Q ss_pred cCCeeEEEEcCCCCeEEEEEec----CCC----cEEEEeC--CCCceE--EEecCcccCeEEEeeeec------------
Q 001318 452 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------ 507 (1101)
Q Consensus 452 ~~~V~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~v~~~~~------------ 507 (1101)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 457888999999887 676776 567 8999999 999987 458889888887776431
Q ss_pred CCccEEEEEecC------CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 508 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 508 ~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
..+..++.++.+ +.|++||++. .....+..+...+. .++|+|+|+.|++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~---------------------~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLM---------------------SPAWSPDGSKLAYVTF 198 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEE---------------------EEEECTTSSEEEEEEC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcce---------------------eeEEcCCCCEEEEEEe
Confidence 013456666554 7999999974 33444444444444 4555555567888887
Q ss_pred CC---cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEE-EEeCCCc--EEEEEecCccccccccccccccccccC
Q 001318 582 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS 655 (1101)
Q Consensus 582 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~ 655 (1101)
++ .|++||+.+++... +..+. ..+.+++|+|||++|+ +++.++. |++||+.++ +. ..+
T Consensus 199 ~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~-~~l----------- 262 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI-RQV----------- 262 (415)
T ss_dssp TTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CE-EEC-----------
T ss_pred cCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CE-EeC-----------
Confidence 75 99999999988764 33332 3588999999999888 5665555 888888765 21 111
Q ss_pred CCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcc
Q 001318 656 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 735 (1101)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 735 (1101)
.
T Consensus 263 -------------------------------------------------------------------------------~ 263 (415)
T 2hqs_A 263 -------------------------------------------------------------------------------T 263 (415)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred ccccceEEEEEcCCCceEEeeec-Cc--eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 736 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 736 ~~~~~i~~l~~s~~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
.+...+.+++|+|||+.|++++. ++ .|++|++ .++.... +.. +...+.+++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~~ 317 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDAD 317 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCeE
Confidence 14456788999999998888876 45 4554454 3333222 111 456788999
Q ss_pred EecCCCEEEEEe-C---CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC---eEEEEEeecceEeeee
Q 001318 813 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 813 ~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l 885 (1101)
|+|||++|++++ + ..|++||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. ++....+
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 999999999887 4 4799999998876 4555554 899999999 899998888777 89999986 5567888
Q ss_pred cCcccCeeEEEEcCCC
Q 001318 886 KGHSKRITGLAFSHAL 901 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg 901 (1101)
.+|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 9999999999999864
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5.6e-23 Score=255.49 Aligned_cols=258 Identities=14% Similarity=0.095 Sum_probs=175.0
Q ss_pred CCCcEEEEEecCCCeEEEEEec-CC-----cEEEEeCCCcceeEeeeeeeee-----cCCCCcccccccccCCCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 413 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l 413 (1101)
...|.+++|||||++ |++++. |+ .|.+||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999997 777776 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
+|||||++|++++. +.|.+||+.++ +.. .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++...
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 99999999999987 99999999988 433 3667888999999999999 567666 4689999999988766
Q ss_pred EecCcccC----------------eEEEeeeecCCccEEEEEecCC---------------------------------c
Q 001318 491 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K 521 (1101)
Q Consensus 491 ~~~~h~~~----------------v~~v~~~~~~~~~~l~s~~~dg---------------------------------~ 521 (1101)
....+... +.+++| ++||++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 55444432 355677 56778888887765 6
Q ss_pred EEEEecCC-CCceeeec--CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-----CCCcEEEEECCCC
Q 001318 522 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV 593 (1101)
Q Consensus 522 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~ 593 (1101)
|.+||+.+ ++...... .+... +..++| |||++|++++ .+..|++||+.++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIY---------------------LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEE---------------------EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EEEEECCCCCceEEecCCCCcceE---------------------EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 77788776 54332221 12233 444555 5556677654 3578999999999
Q ss_pred ceeEEEcCCCCC--CCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 594 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 594 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
+....+..+... ..+.+++|+|||+++++++.+|.++||.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 877766543311 135689999999988888888888888764
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.4e-23 Score=239.54 Aligned_cols=242 Identities=10% Similarity=0.024 Sum_probs=178.2
Q ss_pred CCCcEEEEEecCCCeEEEEEe----cCC----cEEEEeC--CCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 414 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 414 (1101)
...+...+|++.|..++++|+ .|| .|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988888887 467 8999999 888876432 2556777788887
Q ss_pred Eec--------------CCCeEEEEEcC------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 415 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 415 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
+++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 775 26777777664 799999998644 33 4678999999999999999 6888887
Q ss_pred CC---cEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEE-EEecCCc--EEEEecCCCCceeeecCCCCceeEEEE
Q 001318 475 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 548 (1101)
Q Consensus 475 d~---~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 548 (1101)
|+ .|++||+.+++.. .+..|...+.+++|+ ++|+.|+ +++.|+. |++||+.+++. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 9999999999875 466788889999985 5567666 6666655 99999987543 444444445555555
Q ss_pred ccCCceEEeccccCceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC
Q 001318 549 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 625 (1101)
Q Consensus 549 s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 625 (1101)
+||| ++|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|+|++|++++.
T Consensus 275 spdg---------------------~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDS---------------------QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTS---------------------SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred CCCC---------------------CEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 5554 56777665 44 6888899887643 333232 35778999999999998876
Q ss_pred C---CcEEEEEecCc
Q 001318 626 D---NGIKILATSDG 637 (1101)
Q Consensus 626 d---g~i~iw~~~~~ 637 (1101)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.1e-23 Score=261.16 Aligned_cols=235 Identities=9% Similarity=0.065 Sum_probs=166.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC---CeEEEEEecCCCeE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF 422 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l 422 (1101)
..+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 34678999999995 666 789999999999987654 2445554 49999999999999
Q ss_pred EEEEcC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 423 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 423 as~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
|+++.+ +.|.+||+.+++. ..+....+|...+..++|||||+ .|+.++. +.|++||+.+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999875 7889999999875 33323445666799999999999 5666665 799999999998877666
Q ss_pred CcccCe------------------EEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 494 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 494 ~h~~~v------------------~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
.+...+ .+++| ++||++|++++.| +.+.+|++...... ....+..+.+.++|.
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~- 223 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS- 223 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred CCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence 544433 66777 5667888887754 56777876532211 112244445444442
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCC----
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND---- 626 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 626 (1101)
. ..+..|++||+.+++....+..+. +...+.+++|+|||++|++....
T Consensus 224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 279 (723)
T 1xfd_A 224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (723)
T ss_dssp --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence 1 234589999999988656665331 12357789999999988776532
Q ss_pred CcEEEEEecCc
Q 001318 627 NGIKILATSDG 637 (1101)
Q Consensus 627 g~i~iw~~~~~ 637 (1101)
..|++||+.++
T Consensus 280 ~~i~~~d~~~g 290 (723)
T 1xfd_A 280 SILTLCDATTG 290 (723)
T ss_dssp EEEEEEETTTC
T ss_pred EEEEEEeCCCC
Confidence 45777776655
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5e-23 Score=255.92 Aligned_cols=345 Identities=12% Similarity=0.014 Sum_probs=225.6
Q ss_pred CCCeEEEEEecCCCeEEEEEc-CC-----eEEEEEccCCceeeeeeeecccc----------------------CCeeEE
Q 001318 407 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV----------------------GGVNDI 458 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~-d~-----~i~iwd~~~~~~~~~~~~l~~h~----------------------~~V~~~ 458 (1101)
...|.+++|||||++|++++. |+ .|++||+.+++..... ...++. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457999999999999999998 88 9999999998754421 222222 238999
Q ss_pred EEcCCCCeEEEEEecCCCcEEEEeCCCCc--eEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeee
Q 001318 459 AFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 536 (1101)
Q Consensus 459 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 536 (1101)
+|||||+ .|++++. +.|++||+.++. .+..+..|...+..++|+ +||++|+.++ ++.|++||+.+++.....
T Consensus 115 ~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999 5776665 899999999883 445677788889999985 6678888887 569999999875544332
Q ss_pred cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC---------------------------------
Q 001318 537 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--------------------------------- 583 (1101)
Q Consensus 537 ~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------------------- 583 (1101)
..+...+.. .....+ .......+..+.|+|||++|++++.|+
T Consensus 189 ~~~~~~~~~----g~~~~v-~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 189 ADGSTTIGN----GIAEFV-ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp CCCCSSEEE----SCCCHH-HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred cCCccceec----ccccee-eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 222221100 000000 000000123345555555555555443
Q ss_pred cEEEEECCC-CceeEEEcCCCCCCCcCeEEEccCCCEEEEEeC-----CCcEEEEEecCccccccccccccccccccCCC
Q 001318 584 SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTSEN 657 (1101)
Q Consensus 584 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1101)
.|++||+.+ ++.........+...+.+++| |||++|++++. +..|++||+.++ +....+..+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~---------- 331 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET---------- 331 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE----------
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC----------
Confidence 789999988 876554432233346789999 99999997764 455777776554 111110000
Q ss_pred CCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCcccc
Q 001318 658 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
T Consensus 332 -------------------------------------------------------------------------------- 331 (741)
T 2ecf_A 332 -------------------------------------------------------------------------------- 331 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
.++ .-..+..++|+|||
T Consensus 332 --------------------~~~-------------------------------------------~~~~~~~~~~spdg 348 (741)
T 2ecf_A 332 --------------------SPT-------------------------------------------WVPLHNSLRFLDDG 348 (741)
T ss_dssp --------------------CSS-------------------------------------------CCCCCSCCEECTTS
T ss_pred --------------------CCC-------------------------------------------cCCcCCceEECCCC
Confidence 000 00023356778888
Q ss_pred CEEEEEe-CCeEEEEECC-CCceeeEecCCCCCeEEE-EEecCCCcEE-EEEeccC--eEEEEEeec-ceEeeeecCccc
Q 001318 818 SYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGHSK 890 (1101)
Q Consensus 818 ~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h~~ 890 (1101)
+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++ .++||++.. ++....+.. ..
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 8766666 6666666554 344 67777777888887 5999 77655 4555565 899999975 555666665 66
Q ss_pred CeeEEEEcCCCCEEEEEeCC----CceEEEeCCCc
Q 001318 891 RITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 921 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D----~~v~iwd~~~~ 921 (1101)
.+.+++|||||++|+....+ ..+.+|+..++
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 78899999999998876544 46888988653
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=3e-22 Score=248.17 Aligned_cols=378 Identities=9% Similarity=0.010 Sum_probs=223.4
Q ss_pred CCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccC---CeeEEEEcCCCCeEEEEEecCC---------
Q 001318 408 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDD--------- 475 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~---~V~~~~~s~d~~~~~l~s~~~d--------- 475 (1101)
..+.+++|||||+++++ +.||+|++||+.+++... .+.+|.. .|.+++|||||+ +|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence 35788999999998877 789999999999987654 3555554 499999999999 67777654
Q ss_pred CcEEEEeCCCCceEEEec---CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 476 KTIKVWDATNGAKQYIFE---GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
+.|++||+.+++. ..+. +|...+..++|+ +||+.|+.++. +.|++||+.+++.......+...+
T Consensus 91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~S--PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--------- 157 (723)
T 1xfd_A 91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWG--PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--------- 157 (723)
T ss_dssp SEEEEEESSSCCC-EECCCTTCCSCCCSBCCBC--SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---------
T ss_pred eeEEEEECCCCce-EeccCCccccccccccEEC--CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---------
Confidence 7888999999886 3343 444557778874 56688888886 899999998766544333222111
Q ss_pred ceEEeccc--------cCceeEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE
Q 001318 553 TRTYQGFR--------KRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 553 ~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
++.|.. ...+..++|+|||+.|++++.+ +.+.+|++..... .....+..+.|.++|..
T Consensus 158 --~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~---- 224 (723)
T 1xfd_A 158 --IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE---- 224 (723)
T ss_dssp --EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----
T ss_pred --eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----
Confidence 000100 0122445566666666665533 3455565432110 01122445555555431
Q ss_pred eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccc
Q 001318 624 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 703 (1101)
Q Consensus 624 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1101)
..+..|++||+.++ +....+..+..
T Consensus 225 ~~~~~l~~~d~~~~-~~~~~l~~~~~------------------------------------------------------ 249 (723)
T 1xfd_A 225 NPSISLHVIGLNGP-THDLEMMPPDD------------------------------------------------------ 249 (723)
T ss_dssp CCEEEEEEEESSSS-CCCEECCCCCC------------------------------------------------------
T ss_pred CCeeEEEEEECCCC-ceeEEeeCCcc------------------------------------------------------
Confidence 12234555555443 11110000000
Q ss_pred eeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeec
Q 001318 704 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 704 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
T Consensus 250 -------------------------------------------------------------------------------- 249 (723)
T 1xfd_A 250 -------------------------------------------------------------------------------- 249 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-----CCeEEEEECCCCceeeEecC-CCCCe----EEEE
Q 001318 784 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----GGKISLFNMMTFKTMATFMP-PPPAA----TFLA 853 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-----dg~i~vwd~~~~~~~~~~~~-~~~~i----~~l~ 853 (1101)
. ..+...+..++|||||+++++.. +..|++||+.+++....+.. +...+ ..++
T Consensus 250 ---------------~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 250 ---------------P--RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp ---------------G--GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred ---------------C--CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence 0 00233455566666666655443 14688999988887665543 23333 3789
Q ss_pred EecCCCcEEEE--EeccC------eEEEEE-eecce--EeeeecCcccCeeE-EEEcCCCCEEEEEeCC---CceEEEeC
Q 001318 854 FHPQDNNIIAI--GMDDS------SIQIYN-VRVDE--VKSKLKGHSKRITG-LAFSHALNVLVSSGAD---SQLCVWSS 918 (1101)
Q Consensus 854 ~sp~d~~~las--g~~dg------~v~vwd-~~~~~--~~~~l~~h~~~V~~-l~~s~dg~~l~s~s~D---~~v~iwd~ 918 (1101)
|+| ||+.|+. +..++ .|++|| ..+++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++
T Consensus 313 ~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 999 7776664 45666 566677 34443 15555544444554 6999999999866655 78999998
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCC--eEEEEEcCCceee
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--QLAIFETTKLECV 973 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~--~v~vwd~~~~~~~ 973 (1101)
+.........+.....+. ..+..++|+|||++++.. ... ...+++..++..+
T Consensus 392 ~~~~~~~~~~l~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp CSSTTCCCBCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred eCCCCCCcceecccccCC---CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 753321111111100011 357899999999999883 222 2344565554433
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.1e-21 Score=242.37 Aligned_cols=248 Identities=7% Similarity=0.006 Sum_probs=156.9
Q ss_pred cEEEEEecCCCeEEEEEecCCcEEEEeCCCcce--eEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 348 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 348 v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
+..+.|+ |.. +++++.|+ | +||+.+++. ....... .+.. ...........+...|.+++|||| ++++.+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence 4557788 554 56666777 8 999999876 2210000 0000 000000000112257999999999 666665
Q ss_pred EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC-----CceEEEecCcccC--
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-- 498 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~-- 498 (1101)
. ++.|++||+.+++... +..+...+.+++|||||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 4 5999999999886543 455677899999999999 56664 679999999998 8776655444443
Q ss_pred ------------eEEEeeeecCCccEEEEEe---------------------------------cCCcEEEEecCCCCce
Q 001318 499 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR 533 (1101)
Q Consensus 499 ------------v~~v~~~~~~~~~~l~s~~---------------------------------~dg~i~~wd~~~~~~~ 533 (1101)
+.+++| ++||++|++++ .+..|++||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred cccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 366777 56778898887 3467888888765433
Q ss_pred eeec--CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEcCCCC--
Q 001318 534 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGG-- 604 (1101)
Q Consensus 534 ~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~-- 604 (1101)
.... .+.. .+..++|+|+|+.+++++.++ .|++||+.+++....+.....
T Consensus 249 ~~~~~~~~~~---------------------~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 249 YLQTGEPKEK---------------------FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ECCCCSCTTC---------------------EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred eeccCCCCce---------------------eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 2221 1222 344555566666788777665 899999999843333321111
Q ss_pred -CCCcCeEEEcc--CCCEEEEEeCCCcEEEEEec
Q 001318 605 -LPASPRIRFNK--DGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 605 -~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~ 635 (1101)
...+.+++|+| ||++++++..++.+++|.+.
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 11246789999 99999999889999999765
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.4e-21 Score=216.17 Aligned_cols=299 Identities=10% Similarity=0.147 Sum_probs=201.3
Q ss_pred ceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-ceEEeeeccccccCCCCceeee
Q 001318 703 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS 781 (1101)
Q Consensus 703 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~ 781 (1101)
.+++++.++.|++|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------ 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence 3445477899999999642211112211 255678899999999988888886 9999999841
Q ss_pred ecCccccCCCccccc-cccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEC---CCCceeeEecCCCCCeEEEEEe
Q 001318 782 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH 855 (1101)
Q Consensus 782 ~~~~lw~~~~g~~~~-~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s 855 (1101)
.++.... ..+. ....+..++|+|+++++++++ ++.|.+||+ .+.+....+..+ ..+.+++|+
T Consensus 70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s 137 (343)
T 1ri6_A 70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS 137 (343)
T ss_dssp --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence 1111110 0011 123688999999999887776 688999999 444555555543 458999999
Q ss_pred cCCCcEEEEEe-ccCeEEEEEeec-ceEee----eecC-cccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC--ccccc
Q 001318 856 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQK 925 (1101)
Q Consensus 856 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~--~~~~~ 925 (1101)
| ++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|.+|+++. ++...
T Consensus 138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 9 888777777 899999999987 64432 2222 334688999999999776554 789999999954 33221
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcC--C--ceeeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~--~--~~~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
................+..++|+|+|++|++ . .++.|.+||+. + .+.+..+. .+. .+.+++|+|||++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence 2222222211111234568999999998886 4 67899999998 3 34444443 223 3899999999999888
Q ss_pred EE-cCCeEEEEEc--CCceee--eecCCCcccCCCCCCCCccceEEEEeCC
Q 001318 1000 CF-LDATVCVFSA--ANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQ 1045 (1101)
Q Consensus 1000 ~s-~dg~v~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 1045 (1101)
++ .++.|.+|++ .++++. ..+. .+ ..|..++|.++
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~------~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYA------VG-----QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEE------CS-----SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccccc------cC-----CCCeeEEEEcc
Confidence 87 6899999954 466543 2322 12 23557888874
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.7e-21 Score=240.49 Aligned_cols=284 Identities=11% Similarity=0.086 Sum_probs=202.1
Q ss_pred ccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 738 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
...|.+++|+|| ..++.+ .++.+++||+.. +..... .. +...+.+++|||||
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~----------------------~~~~~l--~~--~~~~~~~~~~SpdG 132 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA----------------------RKVTYL--FD--TNEETASLDFSPVG 132 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-ETTEEEEEETTT----------------------TEEEEE--EC--CTTCCTTCEECTTS
T ss_pred ccCceeEEECCC-CeEEEE-ECCEEEEEECCC----------------------CceEEc--cC--CcccccCCcCCCCC
Confidence 356899999999 555555 458999998732 222111 11 45567889999999
Q ss_pred CEEEEEeCCeEEEEECCC-----CceeeEecCCCCC--------------eEEEEEecCCCcEEEEEe------------
Q 001318 818 SYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM------------ 866 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~------------ 866 (1101)
++|+++.++.|++||+.+ ++.......+... +.+++||| ||++|++++
T Consensus 133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEE
T ss_pred CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEee
Confidence 999998899999999998 7766544444333 48999999 899999987
Q ss_pred ---------------------ccCeEEEEEeecceEeeee--cCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeC
Q 001318 867 ---------------------DDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSS 918 (1101)
Q Consensus 867 ---------------------~dg~v~vwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~ 918 (1101)
.+..|++||+.+++..... ..|...+.+++|+|||++|++++.|+ .|++||+
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 4578999999988765444 25777899999999999999988776 8999999
Q ss_pred CCcccccceeeecCCCCCCCCCCCeEEEEcC--CCcEEEEE-eCCeEEEEEcC-CceeeeeccCCCCCCCeeE-EEEcCC
Q 001318 919 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSAPITH-ATFSCD 993 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~la~~-~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~-l~~spd 993 (1101)
.+++............. ...+..++|+| ||++++++ .++.+++|++. ++..+..+. .|...+.+ ++|+||
T Consensus 292 ~~g~~~~~~~~~~~~~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 292 ETGRFVRTLFVETDKHY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEWEVTNFAGFDPK 366 (706)
T ss_dssp TTCCEEEEEEEEECSSC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSSCEEEEEEECTT
T ss_pred CCCceeeEEEEccCCCe---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCeEEEeeeEEcCC
Confidence 98732211111111110 01246789999 99988885 67788888776 566666554 55667876 799999
Q ss_pred CCEEEEEEcC-C----eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC----CcEEEEec
Q 001318 994 SQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD----GGVHVFEP 1064 (1101)
Q Consensus 994 g~~l~s~s~d-g----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d----g~v~vW~~ 1064 (1101)
|+.|+.++.+ + .|+.||+.+++.. .+. + ...+. .++|+| |+++++..+.+ +.|++||+
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEES
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEEC
Confidence 9987665544 3 6777888777633 332 1 11244 799999 67877766444 46999999
Q ss_pred cCCC
Q 001318 1065 LESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
.+++
T Consensus 434 ~~~~ 437 (706)
T 2z3z_A 434 GKGS 437 (706)
T ss_dssp SSCE
T ss_pred CCCe
Confidence 8875
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.8e-20 Score=206.27 Aligned_cols=239 Identities=13% Similarity=0.076 Sum_probs=172.7
Q ss_pred EEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEc-CC
Q 001318 351 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 429 (1101)
Q Consensus 351 ~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~ 429 (1101)
..|.+++.+++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999987653 23345556 9999999998877766 89
Q ss_pred eEEEEEccCCce-eeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-C--cEEEEeCCCCceEEEecCcccCeEEEeee
Q 001318 430 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 505 (1101)
Q Consensus 430 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 505 (1101)
.|.+||..+++. .. .+..+..+..+++|+|+++ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999875 33 3555666666699999999 56655544 3 8999999999998887744 446788885
Q ss_pred ecCCcc-EEEEEecCCc-EEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE-eCC
Q 001318 506 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD 582 (1101)
Q Consensus 506 ~~~~~~-~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d 582 (1101)
++|+ ++++...++. |.+|+++......... ....+. ......++|+|+|++++++ ..+
T Consensus 137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~---------~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISG---------GTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECS---------SSSEEEEEECTTSSEEEEEETTT
T ss_pred --CCCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccC---------CCCccceEECCCCCEEEEEeCCC
Confidence 4555 4455556688 9999998644332111 000011 1234567777887766554 468
Q ss_pred CcEEEEECCCCce---eEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 583 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 583 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
+.|++||+.+++. +..+... ..+..++|+|+|++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777643 3478899999999777665 4788999998876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.2e-20 Score=210.30 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=174.8
Q ss_pred CCCCeeEEEEecCCCEEEEEe-C-CeEEEEECC--CCc--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEe
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 876 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~ 876 (1101)
+...+.+++|+|+|+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788899999999998888 4 899999997 544 334455434 789999999 788776665 4889999999
Q ss_pred ---ecceEeeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCC-cccccce--eeecCCCCCCCCCCCeEEEEcC
Q 001318 877 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 877 ---~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+.+.+..+..+. .+.+++|+|||++|++++ .|+.|.+||+.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5556666666544 588999999999888877 899999999987 4432211 1222222 3568899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--cee--eeecc--CCCC--CCCeeEEEEcCCCCEEEEE-EcCCeEEEEEcC--Cc--
Q 001318 950 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYAC-FLDATVCVFSAA--NL-- 1014 (1101)
Q Consensus 950 dg~~la~-~-~d~~v~vwd~~~--~~~--~~~~~--~~~h--~~~i~~l~~spdg~~l~s~-s~dg~v~vwd~~--~~-- 1014 (1101)
+|+++++ + .++.+.+|++.. ++. ..... ..++ ...+.+++|+|||++|+++ ..++.|++||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998776 4 678999999953 332 11111 1111 3467789999999988754 478999999998 33
Q ss_pred eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001318 1015 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
+.+..+. .+ .. +..++|+| |+++|++++ .|+.|.+|++....
T Consensus 268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence 3443333 11 11 33799999 678777777 68999999775433
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.6e-20 Score=208.24 Aligned_cols=286 Identities=13% Similarity=0.052 Sum_probs=196.7
Q ss_pred EEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEE
Q 001318 744 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 822 (1101)
Q Consensus 744 l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 822 (1101)
..|.+++.. +++.+.++.|.+||.. ++....... . +...+ .++|+|+|+++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence 345555555 5566678999998863 333222111 1 34445 9999999997777
Q ss_pred Ee--CCeEEEEECCCCce-eeEecCCCCCeEEEEEecCCCcEEEEEeccC---eEEEEEeecceEeeeecCcccCeeEEE
Q 001318 823 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 896 (1101)
Q Consensus 823 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~ 896 (1101)
++ ++.|++||..+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+. ...+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceE
Confidence 66 68999999999887 777766666555599999 888888655553 89999999999888876544 468999
Q ss_pred EcCCCCEEEEE-eCCCc-eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCCcee
Q 001318 897 FSHALNVLVSS-GADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC 972 (1101)
Q Consensus 897 ~s~dg~~l~s~-s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~~~~ 972 (1101)
|+|||++|+++ ..++. |.+|++................ ...+..++|+|||+++++ + .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999866554 55688 9999988533211110111111 135689999999997766 4 578999999999887
Q ss_pred ---eeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCcee--eeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 973 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 973 ---~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+.......... .... ..++|+| |
T Consensus 211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-LFGA--NQMALNK-T 283 (331)
T ss_dssp CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-GTTC--CCEEECT-T
T ss_pred cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-cccc--cceEECC-C
Confidence 666642 46788999999999776554 578899999999987 33332110010110 0001 2589999 6
Q ss_pred CCEEE-EEecCCcEEEEeccCCC
Q 001318 1047 PNEFA-LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~-s~~~dg~v~vW~~~~~~ 1068 (1101)
+++|+ ++..++.|.+||+.+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 77765 45556799999998765
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=6.9e-20 Score=205.22 Aligned_cols=273 Identities=11% Similarity=0.103 Sum_probs=206.0
Q ss_pred ccceEEEEEcCCCceEEeeec-------CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 738 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 738 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
...+..++|+|+++.+++++. ++.|.+||.. ++....... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 456789999999998887774 4577777753 333222111 1234678
Q ss_pred EEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCC---------eEEEEEecCCCcEEEEEe--ccCeEEEEEee
Q 001318 811 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 877 (1101)
Q Consensus 811 ~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~ 877 (1101)
++++++|++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999777665 689999999999988887654322 78899999 777666665 47899999999
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
+++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++..... .. +.......+..++|+|+|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence 99998888766667899999999999999999999999999987643222 11 111111356789999999988774
Q ss_pred --eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 958 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 958 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.++.|.+||+.+++.+..+... ...+++|+|||+++++++ .++.|.+||..+++.+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence 4589999999999988877642 236799999999766555 68999999999999988765 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCC
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 1244899999 678776666553
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=2.2e-20 Score=207.69 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=142.1
Q ss_pred CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEE
Q 001318 825 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL 904 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l 904 (1101)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|||+.|
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence 58899999999888877764 45678899999 88888777 68999999999988877765441 1133789999877
Q ss_pred EEEeCCC------------------------ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 905 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 905 ~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
+..+.++ .|.+||+.+++.. ...... +. ..+..++|+|||++++++ ++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~~ 260 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-YN 260 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-ES
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-CC
Confidence 6554332 3689999987643 111111 11 256789999999999888 79
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 999999999988877653 3468899999999999999999999999999999988876
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.9e-20 Score=208.24 Aligned_cols=267 Identities=12% Similarity=0.072 Sum_probs=198.1
Q ss_pred ceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCC-CeeEEEEecCCCEEEEEe--CCe
Q 001318 751 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 827 (1101)
Q Consensus 751 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~s--dg~ 827 (1101)
.++++++.++.|.+||+.. +..+.....+ +.. .+..++|+|+|++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999998732 2222111101 111 477899999998776654 689
Q ss_pred EEEEECCCCceeeEecCCC-----CCeEEEEEecCCCcEEEEEe------------ccCeEEEEEeecceEeeeecCccc
Q 001318 828 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 828 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999998887765321 2577899999 888888886 579999999999888877764 45
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCC--------
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET-------- 960 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~-------- 960 (1101)
.+.+++|+|||++|+++ ++.|.+||+.+++.... + ..+.. ...+.|+|||++++++ .++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~--~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--K--PIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--E--CSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--e--ecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 67889999999988887 68899999998654221 1 11110 1123789999877653 122
Q ss_pred ---------------eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc
Q 001318 961 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1025 (1101)
Q Consensus 961 ---------------~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 1025 (1101)
.|.+||+.+++.. ......+...+.+++|+|||++|+++ ++.|++||+.+++.+..+..
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--- 278 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--- 278 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence 4789999998876 33333556788999999999999988 79999999999998877651
Q ss_pred cCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1026 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1026 ~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
.. .+..++|+| |+++|++++.++.|.+||+.+++.
T Consensus 279 -~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 279 -PH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp -SS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred -CC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence 11 133799999 678888889999999999999883
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.2e-19 Score=203.31 Aligned_cols=249 Identities=11% Similarity=0.080 Sum_probs=182.4
Q ss_pred cCCCCcEEEEEecCCCeEEEEEec------CCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 416 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 416 (1101)
.....+..++|+|+|++++++... ++.|.+||..+++.+.... ....+.+++|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s 97 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATIN 97 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEEC
Confidence 345678899999999975555533 6789999999988765311 12347789999
Q ss_pred cCCCeEEEE-EcCCeEEEEEccCCceeeeeeeeccccC---------CeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC
Q 001318 417 PDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 486 (1101)
Q Consensus 417 pdg~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 486 (1101)
|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||+.++
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 999976655 4579999999999886653 322221 278899999999632222246889999999999
Q ss_pred ceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeE
Q 001318 487 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 566 (1101)
Q Consensus 487 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 566 (1101)
+.+..+..+...+.+++|+ ++++++++++.++.|.+||..+.+....+..... + ....+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~~ 235 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFIN 235 (353)
T ss_dssp EEEEEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEEE
T ss_pred ceEEEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccce
Confidence 9998887666667778874 5667899999999999999988765554433110 0 0113344
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEe-CCCcEEEEEecCc
Q 001318 567 VQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 637 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 637 (1101)
++++|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 236 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 236 ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 56666666666655 45999999999999888887432 25699999999766665 6899999998776
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.2e-19 Score=202.57 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=167.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe---CCeEEEEECCCCc--eeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEee
Q 001318 804 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~ 877 (1101)
+...+..++|+|||++++++. ++.|++||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999997665 3444455677889999999 888888877 78999999996
Q ss_pred c---ceEeeeecC---------cccCeeEEEEcCCCCEEEEEeCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCeE
Q 001318 878 V---DEVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 944 (1101)
Q Consensus 878 ~---~~~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 944 (1101)
. .+.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 233333321 12348889999999966777778899999998 443222111222222 24678
Q ss_pred EEEcCCCcEEEEE--eCCeEEEEEcCC--ceee--eeccCCCC----CCCeeEEEEcCCCCEEE-EEEcCCeEEEEEcCC
Q 001318 945 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1013 (1101)
Q Consensus 945 ~~~s~dg~~la~~--~d~~v~vwd~~~--~~~~--~~~~~~~h----~~~i~~l~~spdg~~l~-s~s~dg~v~vwd~~~ 1013 (1101)
++|+|||++++++ .++.+.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999977773 578999999874 4432 22211110 14588999999999874 555689999999973
Q ss_pred -c--eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec-CCcEEEEecc
Q 001318 1014 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPL 1065 (1101)
Q Consensus 1014 -~--~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~-dg~v~vW~~~ 1065 (1101)
+ +.+..+.. .+ ..+..++|+| |+++|++++. ++.|.+|++.
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEe
Confidence 3 33433331 01 2234899999 6787777765 4899999654
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=6.4e-20 Score=226.84 Aligned_cols=334 Identities=12% Similarity=0.074 Sum_probs=218.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC-CCCcCeEEEccCCCEEEEEeC---------CCcEEEEEecC
Q 001318 567 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 636 (1101)
Q Consensus 567 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~ 636 (1101)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 45666664 55556799999999999998777754321 013789999999999998876 67888888876
Q ss_pred ccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceee
Q 001318 637 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 716 (1101)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 716 (1101)
+ +.....
T Consensus 100 g-~~~~~~------------------------------------------------------------------------ 106 (719)
T 1z68_A 100 G-EFVRGN------------------------------------------------------------------------ 106 (719)
T ss_dssp T-EECCSS------------------------------------------------------------------------
T ss_pred C-ccccce------------------------------------------------------------------------
Confidence 6 211000
Q ss_pred eccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccc
Q 001318 717 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~ 796 (1101)
. -...+..++|||||+.|+.+. ++.|++|++..+.... +- ..+....
T Consensus 107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~--~~~~~~~ 153 (719)
T 1z68_A 107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------IT--FNGRENK 153 (719)
T ss_dssp ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CC--CCCBTTT
T ss_pred ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Ee--cCCCcCC
Confidence 0 012356689999999888775 6789998874322100 00 0000000
Q ss_pred cccCCCCCC---------CCeeEEEEecCCCEEEEEe-CC----------------------------------eEEEEE
Q 001318 797 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 832 (1101)
Q Consensus 797 ~~~~~~~~~---------~~i~~~~~s~dg~~la~~s-dg----------------------------------~i~vwd 832 (1101)
.+. ++. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 011 1235899999999999987 42 788999
Q ss_pred CCCCcee--------eEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEE----eecceEeeee----cCcccCe
Q 001318 833 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYN----VRVDEVKSKL----KGHSKRI 892 (1101)
Q Consensus 833 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd----~~~~~~~~~l----~~h~~~V 892 (1101)
+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 22345777899999999 78888775433 3588999 8788877666 4777777
Q ss_pred e-----EEEEcCCCCEEEE--EeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC---
Q 001318 893 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 959 (1101)
Q Consensus 893 ~-----~l~~s~dg~~l~s--~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d--- 959 (1101)
. .+.|+|||+.|+. ...++ .|.+|++.+++. ..+..+ . ..+..+.++ +++.++. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQITSG-K---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EECSCS-S---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----EecccC-c---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 7 8999999996654 44555 466677766441 112211 1 246677777 8887777 443
Q ss_pred --CeEEEEEcCC--cee-eeecc--CCCCCCCeeEEEEcCCCCEEEEE-EcC--CeEEEEEcCCceeeeecC
Q 001318 960 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 --~~v~vwd~~~--~~~-~~~~~--~~~h~~~i~~l~~spdg~~l~s~-s~d--g~v~vwd~~~~~~~~~~~ 1021 (1101)
+..++|.+.. +.. ...+. ..+|...+..+.|||||++++.. +.+ ..+.+||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887653 321 12222 12356678899999999987743 333 468999999888665444
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=6.4e-20 Score=199.59 Aligned_cols=233 Identities=13% Similarity=0.035 Sum_probs=171.1
Q ss_pred CCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCC-CCCeEEEEEecCCCcEEEEEe--ccCeEEEEEee--
Q 001318 804 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR-- 877 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~-- 877 (1101)
|...+.+++|+|+|++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+.
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666655 36789999999 899999998 44556666554
Q ss_pred cceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 878 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 878 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+++ ...+..+. .+..++|+|||++|+ +++.|+.++||+++..... ... ...+. ..+..++|+|+|+++++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence 443 44444443 489999999999887 7788999999996432111 111 11221 36789999999998887
Q ss_pred -E-eCCeEEEEEcC-CceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----------CeEEEEEcCCceeeeecCC
Q 001318 957 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 957 -~-~d~~v~vwd~~-~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----------g~v~vwd~~~~~~~~~~~~ 1022 (1101)
+ .++.+++|++. .+..+..+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 444445444 567789999999999999988876 569999999887643322
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCCEEEEEecCC
Q 001318 1023 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1023 ~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
.. +| ...+. .++|+| |+++|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 11 11 11233 688999 678888777654
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.4e-19 Score=221.62 Aligned_cols=287 Identities=10% Similarity=0.043 Sum_probs=189.4
Q ss_pred ceEEEEEcCCCceEEeeec---------CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeE
Q 001318 740 KISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 810 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~ 810 (1101)
.+.+++|||||+.|+.++. ++.+++||+. ++..+... . ....+..
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~--~--l~~~~~~ 114 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGN--E--LPRPIQY 114 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSS--C--CCSSBCC
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCccccce--e--cCccccc
Confidence 3678999999999988876 5778877763 33321000 0 1245788
Q ss_pred EEEecCCCEEEEEeCCeEEEEECCCCceeeEe-cCCCCCe-----------------EEEEEecCCCcEEEEEeccC---
Q 001318 811 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS--- 869 (1101)
Q Consensus 811 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~lasg~~dg--- 869 (1101)
++|||||++||.+.++.|++||+.+++..+.. .++...+ .+++||| ||++||+++.|.
T Consensus 115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence 99999999999999999999999887765432 2222222 5899999 999999988652
Q ss_pred -------------------------------eEEEEEeecceEe--------eeecCcccCeeEEEEcCCCCEEEEEeCC
Q 001318 870 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 870 -------------------------------~v~vwd~~~~~~~--------~~l~~h~~~V~~l~~s~dg~~l~s~s~D 910 (1101)
.|++||+.+++.. ..+.+|...+.+++||||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7899999887643 2345688889999999998877775432
Q ss_pred ----CceEEEe----CCCcccccceeeecCCCCCCCCCCCe-----EEEEcCCCcEEEE--E-eCC--eEEEEEcCCcee
Q 001318 911 ----SQLCVWS----SDGWEKQKNRFLQIPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 972 (1101)
Q Consensus 911 ----~~v~iwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~dg~~la~--~-~d~--~v~vwd~~~~~~ 972 (1101)
..|.+|| +.+++...... ....++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 2488899 77765322110 0001222 1333 7899999997665 3 333 688888887763
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCC--cee-eeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+.. .+. ++ ...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s~ 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFSD 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEECG
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEECC
Confidence 3333 345568888888 88887766665 7888998754 421 222220 011 11 11133 689999
Q ss_pred CCCCEEE-EEecC--CcEEEEeccCCC
Q 001318 1045 QEPNEFA-LGLSD--GGVHVFEPLESE 1068 (1101)
Q Consensus 1045 ~d~~~l~-s~~~d--g~v~vW~~~~~~ 1068 (1101)
|+++++ +++.+ ..+.+|++.+++
T Consensus 420 -dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 -YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred -CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 456555 44444 468899988776
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=8.2e-19 Score=195.82 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=182.9
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeec---CceEEeeeccccccCCCCceeeeecCc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ 785 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.++.+.+|.++.... ....+.. ..+...+..++|+|+|+ +++++. ++.|.+|++..+..
T Consensus 14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 456788888764221 1111111 12445677899999999 666654 58999998732211
Q ss_pred cccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECC-CC--ceeeEecC---------CCCCeEE
Q 001318 786 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TF--KTMATFMP---------PPPAATF 851 (1101)
Q Consensus 786 lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~--~~~~~~~~---------~~~~i~~ 851 (1101)
..+.. +. .+...+..++|+|||++|++++ ++.|.+|++. ++ ..+..+.. +...+.+
T Consensus 76 -------~~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~ 145 (347)
T 3hfq_A 76 -------HKLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY 145 (347)
T ss_dssp -------EEEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred -------EEeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence 00000 00 1456688999999999988887 5899999996 22 22333322 1234889
Q ss_pred EEEecCCCcEEEEEeccCeEEEEEee-cceEe--eeecCc-ccCeeEEEEcCCCCEEEE-EeCCCceEEEeCCC--cccc
Q 001318 852 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ 924 (1101)
Q Consensus 852 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~l~s-~s~D~~v~iwd~~~--~~~~ 924 (1101)
++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++..
T Consensus 146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999 77777777778999999998 45432 222222 235788999999996665 55688999999874 3322
Q ss_pred cceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-E-eCCeEEEEEcCC-c--eeeeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 925 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~v~vwd~~~-~--~~~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
.................+..++|+|||++|++ . .++.|.+|++.. + +.+..+. .+...+.+++|+|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence 22222222221111135788999999998866 3 578999999973 2 4444443 34567899999999999888
Q ss_pred EEcC-CeEEEE--EcCCceee
Q 001318 1000 CFLD-ATVCVF--SAANLKLR 1017 (1101)
Q Consensus 1000 ~s~d-g~v~vw--d~~~~~~~ 1017 (1101)
++.+ +.|.+| |..+|++.
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 8765 899999 55677665
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=2.3e-19 Score=195.09 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=171.6
Q ss_pred CcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCC-cceeEeeeeeeeecCCCCcccccccccCC-CCCeEE
Q 001318 335 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR 412 (1101)
Q Consensus 335 ~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~ 412 (1101)
......+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 3445566779999999999999996 66665 78999999998 76543 23344 478999
Q ss_pred EEEecCCCeEEEEE--cCCeEEEEEc--cCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCC-CCc
Q 001318 413 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA 487 (1101)
Q Consensus 413 l~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~ 487 (1101)
++|+|||++|++++ .++.+.||.+ .+++ .. .+..+ ..+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3345555554 4544 22 24333 35999999999995 34478889999999864 233
Q ss_pred eEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEEEEecC-CCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 488 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 488 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
....+..|...+.+++|+ +++++|+.++ .++.+++|+++ .......+..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------------- 221 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF-------------------- 221 (297)
T ss_dssp CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE--------------------
T ss_pred cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC--------------------
Confidence 456677788889999985 5557676655 58999999987 33444444444433444
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCC
Q 001318 566 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 627 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 627 (1101)
+.|+|++++|++++.+ +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus 222 -~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 -PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 4555555677776654 569999999887644443222234688899999999999887653
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2e-18 Score=197.27 Aligned_cols=314 Identities=14% Similarity=0.145 Sum_probs=199.4
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+..+++++++..+++++.++ +++|+........... .....+........ ..+...|.+++|+|+|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~ 105 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL 105 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence 4678899999999999988887 8888764321100000 00000000000000 12567899999999999
Q ss_pred EEE----EEe-CCeEEEEECCCC--------ce---eeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 819 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 819 ~la----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
+|+ +++ |+.|++||+.++ +. +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++..+
T Consensus 106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 999 566 799999998765 21 35567789999999999954899999999999999999998777
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC-CCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
....+|...|++++|+|+|++|++|+.|++|++||++ ++... .+...... ......+.+++|++++.++++. .+
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 7777899999999999999999999999999999998 32211 11111110 0111378999999999988772 44
Q ss_pred C------eEEEEEcCCcee-----eeeccC-----CCCCCCeeEEEEcCCCCEEEEEEc-CCeEEEEEcCCc--ee-eee
Q 001318 960 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANL--KL-RCR 1019 (1101)
Q Consensus 960 ~------~v~vwd~~~~~~-----~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s~-dg~v~vwd~~~~--~~-~~~ 1019 (1101)
| .+++|++.+.+. ...+.. .+...+-..+.+-+|.+++++++. .+.|.|...... .. ...
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 389999976521 111110 011222333444478888776664 333666654321 01 000
Q ss_pred cC--CCcccCCCCCCCCccceEEEEe--CCC------------CCEEEEEecCCcEEEEeccC
Q 001318 1020 IN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1020 ~~--~~~~~~~~~~~~~v~~~~i~~~--~~d------------~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+. ....+|-.......+++.+++. ..+ --.|..-+.||.+..|.+-+
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 00 0111222112233445555443 211 13577888899999999976
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=4.1e-18 Score=210.25 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=158.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCC-----CeEEEEEecCCC
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 420 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 420 (1101)
....+++|+|||++ ++++ |+.|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 45668999999984 7775 8999999999998654 2344432 334589999999
Q ss_pred eEEEEEcC---------CeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 421 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 421 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+|+.++.+ +.+.+||+.+++... +..|...+..++|||||+. |+.+ .|+.|++||+.+++..+.
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999886 566799999987543 6678889999999999994 5555 468999999998876542
Q ss_pred -ecCcccCe-----------------EEEeeeecCCccEEEEEecCCc-EEEEecCCCCceeeecCCCCceeEEEEccCC
Q 001318 492 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 552 (1101)
Q Consensus 492 -~~~h~~~v-----------------~~v~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 552 (1101)
..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+...|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 23333323 23556 577788888876554 8888764321110 122334444444444
Q ss_pred ceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCC---Cc--eeEEEcCC----CCCCCcCeEEEccCCCEEEEE
Q 001318 553 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 623 (1101)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~ 623 (1101)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1123689999998 73 23333321 133457889999999977765
Q ss_pred eC----CCcEEEEEecCc
Q 001318 624 TN----DNGIKILATSDG 637 (1101)
Q Consensus 624 ~~----dg~i~iw~~~~~ 637 (1101)
.. +..|++||+.++
T Consensus 278 ~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EESSTTEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEECCCC
Confidence 43 236999999887
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=8.3e-19 Score=196.04 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=179.8
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEE-EEEeccCeEEEEEeecceEeeeec
Q 001318 810 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.++++++++++++++ ++.|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346778888888888 8999999999999888876543 2578999999 77654 555678999999999998887765
Q ss_pred Cc------ccCeeEEEEcCCCCEEEEEeCC------------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 887 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 887 ~h------~~~V~~l~~s~dg~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... ......+ ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 33 2347899999999999998865 8999999988553221 1111111 257889999
Q ss_pred CCCcEEEEEeCCeEEEEEcCCceeeeeccCCC------------------------------------------------
Q 001318 949 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 980 (1101)
Q Consensus 949 ~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~------------------------------------------------ 980 (1101)
|||+ ++++ ++.|.+||+.+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 4459999999988776554321
Q ss_pred ------------------CCCCeeEEEEcC-CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEE
Q 001318 981 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1041 (1101)
Q Consensus 981 ------------------h~~~i~~l~~sp-dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 1041 (1101)
+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+. .... +. .++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence 011456778889 99999888 8899999999999887765 1111 33 799
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCCc
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~~ 1069 (1101)
|+| |+++|++++.++.|.+||+.+++.
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccce
Confidence 999 678888888999999999998873
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.9e-18 Score=195.96 Aligned_cols=266 Identities=13% Similarity=0.067 Sum_probs=170.1
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE-
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 423 (1101)
...++.+++++++.+ +++|+.|+ |+||+.......... ..+. .............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKP---GDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCT---TCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhccc---ccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 456899999999995 78888887 899886432110000 0000 0000001111234677899999999999999
Q ss_pred ---EEEcCCeEEEEEccCC--------ceeeeeeeeccccCCeeEEEEcCC-CCeEEEEEecCCCcEEEEeCCCCceEEE
Q 001318 424 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 424 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 491 (1101)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 233334567789999999999998 55 799999999999999999988777
Q ss_pred ecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC
Q 001318 492 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 571 (1101)
Q Consensus 492 ~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 571 (1101)
..+|...|.+++|++ +|++|++|+.||+|++||.+ +.....+..+... ...+...+..++|++
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~--------------~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY--------------ESDHPVRVLDVLWIG 250 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC--------------CTTSCEEEEEEEEEE
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCccc--------------CCCCceeEEEEEEec
Confidence 778999999999964 56899999999999999998 3444333332110 000011333444444
Q ss_pred CCCEEEE-EeCCC------cEEEEECCCCc-----eeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeC-CCcEEEEE
Q 001318 572 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA 633 (1101)
Q Consensus 572 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~ 633 (1101)
++.++++ ...+| .+++|++...+ ....+... ........+.+-++.+++++++. .+.|.++.
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence 4444544 33343 38999997652 11221111 11111112333367677666654 45577776
Q ss_pred ec
Q 001318 634 TS 635 (1101)
Q Consensus 634 ~~ 635 (1101)
..
T Consensus 331 ~~ 332 (434)
T 2oit_A 331 RQ 332 (434)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=8.2e-19 Score=210.80 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=162.6
Q ss_pred cceEEEEEcCCCceEEeeec---CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 739 TKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
..+..++|+|| +.++++.. +....+|.+.. |+...... +. ....+...+|+|
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~-----------------~~~g~~~~----l~---~~~~~~~~~~s~ 119 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT-----------------SRPGEEQR----LE---AVKPMRILSGVD 119 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEET-----------------TSTTCCEE----CT---TSCSBEEEEEEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEec-----------------cCCCcccc----cc---CCCCceeeeeCC
Confidence 46677889988 66665554 45556665421 11111111 11 122344678888
Q ss_pred CCCE--EEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecceEeeeecCcc
Q 001318 816 NDSY--VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 816 dg~~--la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~~h~ 889 (1101)
||+. ++++.++.+.+||+.+++.......+. .+++||| ||++||+++.+ +.|++||+.+++.. .+..|.
T Consensus 120 dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~ 194 (582)
T 3o4h_A 120 TGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE 194 (582)
T ss_dssp CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS
T ss_pred CCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC
Confidence 8864 344446667799999887655544332 8899999 99999988877 78999999888754 678898
Q ss_pred cCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE--------EcCCCcEEEE-Ee
Q 001318 890 KRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ--------FHQDQIHFLV-VH 958 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~la~-~~ 958 (1101)
+.+..++|||||++|++++.++ .|++||+++++.. ...++. ..+..++ |+|||..+++ ..
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEc
Confidence 9999999999999999888888 8999999986642 222322 2444555 9999977777 58
Q ss_pred CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe---EEEEEcCC
Q 001318 959 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT---VCVFSAAN 1013 (1101)
Q Consensus 959 d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~---v~vwd~~~ 1013 (1101)
++.+++|++ ++.... +...+.+++|+ ||+++++++.+.+ |++||..+
T Consensus 266 ~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 266 EGRSAVFID--GERVEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEET--TEEECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCcEEEEEE--CCeecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999 666542 24678999999 9999999888755 67777654
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.1e-18 Score=209.77 Aligned_cols=271 Identities=10% Similarity=0.046 Sum_probs=187.0
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEecCcc-cCeEEEeeeecCCccEEEEEec---CCcEEEE
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 525 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~---dg~i~~w 525 (1101)
+..+|.+++|+|||+ .|++++. |++++||++.+++.. .+..|. ..+..++|+ +| +++++++. +...++|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC--CC-eEEEEeccCCCCcceEEE
Confidence 356899999999999 6777766 999999998666654 454454 678889986 44 67777765 5556776
Q ss_pred ecCC--CCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC
Q 001318 526 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 603 (1101)
Q Consensus 526 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 603 (1101)
.++. ......+.... .....+|+|+|+ ..+++.+.++.+.+||+.+++.........
T Consensus 94 ~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAVK-PMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTSC-SBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCCC-CceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 6554 33222222211 122334444443 223444445556699999987766554321
Q ss_pred CCCCcCeEEEccCCCEEEEEeCC----CcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccc
Q 001318 604 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 679 (1101)
Q Consensus 604 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
.+++|+|||++|++++.+ +.|++||+.++. .. .+
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l----------------------------------- 190 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VF----------------------------------- 190 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EE-----------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Ee-----------------------------------
Confidence 789999999999988766 567777765541 10 00
Q ss_pred cccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC
Q 001318 680 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
T Consensus 191 -------------------------------------------------------------------------------- 190 (582)
T 3o4h_A 191 -------------------------------------------------------------------------------- 190 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--eEEEEECCCC
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 836 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~ 836 (1101)
. .+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 191 ----------------------------------------~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 191 ----------------------------------------D--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp ----------------------------------------C--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred ----------------------------------------e--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 0 0334456677777777777555 56 7889999888
Q ss_pred ceeeEecCCCCCeEEEE--------EecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe
Q 001318 837 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 908 (1101)
Q Consensus 837 ~~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s 908 (1101)
+.. .+.+|...+..++ |+| ||+++++++.||.+++|++ ++.... +.+.|.+++|+ ||+++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEc
Confidence 777 7777777677677 999 7799999999999999999 666553 34678999999 999999988
Q ss_pred CCCc---eEEEeCCC
Q 001318 909 ADSQ---LCVWSSDG 920 (1101)
Q Consensus 909 ~D~~---v~iwd~~~ 920 (1101)
.+.+ +.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 8754 66666543
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=4.2e-17 Score=201.26 Aligned_cols=334 Identities=10% Similarity=0.020 Sum_probs=211.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC-CCc--CeEEEccCCCEEEEEeCC---------CcEEEEE
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA 633 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~iw~ 633 (1101)
.+.|+|++.+++++ |+.|++||+.+++....+..+... ..+ ..++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 45666776677775 999999999999988777765421 112 348999999999998875 4455777
Q ss_pred ecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcc
Q 001318 634 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 713 (1101)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 713 (1101)
+.++ +..+ +
T Consensus 99 ~~~~-~~~~-l--------------------------------------------------------------------- 107 (740)
T 4a5s_A 99 LNKR-QLIT-E--------------------------------------------------------------------- 107 (740)
T ss_dssp TTTT-EECC-S---------------------------------------------------------------------
T ss_pred CCCC-cEEE-c---------------------------------------------------------------------
Confidence 6655 1110 1
Q ss_pred eeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcc
Q 001318 714 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 793 (1101)
Q Consensus 714 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~ 793 (1101)
..+...+...+|||||+.|+.+ .++.|++|++..+.... . . ..|.
T Consensus 108 ---------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~---l---------t-~~g~ 152 (740)
T 4a5s_A 108 ---------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR---I---------T-WTGK 152 (740)
T ss_dssp ---------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE---C---------C-SCCB
T ss_pred ---------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE---E---------c-CCCC
Confidence 1134567899999999988877 56789998874322100 0 0 0000
Q ss_pred ccccccCCCCCC---------CCeeEEEEecCCCEEEEEe-C-C-----------------------------------e
Q 001318 794 MMTNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-G-G-----------------------------------K 827 (1101)
Q Consensus 794 ~~~~~~~~~~~~---------~~i~~~~~s~dg~~la~~s-d-g-----------------------------------~ 827 (1101)
... .+. ++. ....+++|||||++||.++ | + +
T Consensus 153 ~~~-~~~--g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~ 229 (740)
T 4a5s_A 153 EDI-IYN--GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229 (740)
T ss_dssp TTT-EEE--SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred ccc-eec--CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence 000 000 011 2234689999999999875 2 2 4
Q ss_pred EEEEECCC---Cc--eeeEec------CCCCCeEEEEEecCCCcEEEEEec----cCeEEEEEeecce----Eee--ee-
Q 001318 828 ISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS--KL- 885 (1101)
Q Consensus 828 i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~~--~l- 885 (1101)
|++||+.+ ++ ....+. ++...+..++|+| |+++++.... +..|++||+.+++ +.. .+
T Consensus 230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 88899988 73 233343 3677799999999 8887766543 3479999999887 332 22
Q ss_pred -cCcccCee-----EEEEcCCCCEEE-EEeC-C--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 886 -KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 886 -~~h~~~V~-----~l~~s~dg~~l~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
.+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++. .++..+. ..+..+. .+|++.++
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~ 378 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLY 378 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEE
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEE
Confidence 45665554 789999999887 6653 3 3588888887542 2333332 2344443 24477666
Q ss_pred E-EeC-----C--eEEEEEcCCceeeeeccC--CCCCCCeeEEEEcCCCCEEEEEEcC---CeEEEEEcCCceeeeecC
Q 001318 956 V-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 956 ~-~~d-----~--~v~vwd~~~~~~~~~~~~--~~h~~~i~~l~~spdg~~l~s~s~d---g~v~vwd~~~~~~~~~~~ 1021 (1101)
. +.. + .|...++.++.....+.. .+.......+.||||+++++..... ..+.+++..+++.+..+.
T Consensus 379 f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 6 432 2 455556665544323321 1234678899999999987755543 368889988887655443
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=2.1e-17 Score=185.47 Aligned_cols=276 Identities=11% Similarity=0.093 Sum_probs=181.8
Q ss_pred cCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC----ceEEeeeccccccCCCCceeeeec
Q 001318 708 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA 783 (1101)
Q Consensus 708 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~ 783 (1101)
+.++.|.+|.+............ . +......++|+|+|++|++++.+ +.+.+|++..
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~-------------- 84 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK-------------- 84 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET--------------
T ss_pred CCCCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC--------------
Confidence 34578999988643221111110 1 44566779999999999888875 7999998743
Q ss_pred CccccCCCcccccc-ccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEe------cC--------CC
Q 001318 784 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP 846 (1101)
Q Consensus 784 ~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~------~~--------~~ 846 (1101)
.+|.+... ... .+...+..+++ +++++++++ ++.|.+|++.....+..+ .+ +.
T Consensus 85 ------~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 85 ------EKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp ------TTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred ------CCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 11221110 000 13445667777 888888876 689999999754332211 11 12
Q ss_pred CCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecce-------E------eeeecCcccCeeEEEEcCCCCEEEEEe-CCC
Q 001318 847 PAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE-------V------KSKLKGHSKRITGLAFSHALNVLVSSG-ADS 911 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~-------~------~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~ 911 (1101)
..+.+++|+| ++++|++++ .++.|++|++.... + ......+.....+++|+|||++|++++ .++
T Consensus 155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 233 (361)
T 3scy_A 155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG 233 (361)
T ss_dssp CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence 3458899999 887665554 58899999987543 1 111223445578999999999887777 689
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e--CCeEEEEEcC--Cce--eeeeccCCCCCCC
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 984 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~--d~~v~vwd~~--~~~--~~~~~~~~~h~~~ 984 (1101)
.|.+|++.+++......+.....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ...
T Consensus 234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~ 307 (361)
T 3scy_A 234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH 307 (361)
T ss_dssp EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence 9999999876543322222222221 245799999999998774 3 4789999985 444 333333 2 457
Q ss_pred eeEEEEcCCCCEEEEEE-cCCeEEEE--EcCCceeeee
Q 001318 985 ITHATFSCDSQLVYACF-LDATVCVF--SAANLKLRCR 1019 (1101)
Q Consensus 985 i~~l~~spdg~~l~s~s-~dg~v~vw--d~~~~~~~~~ 1019 (1101)
+.+++|+|||++|++++ .++.|.+| |..+|++...
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 88999999999988887 67899996 4557776543
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.3e-16 Score=178.92 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=145.5
Q ss_pred ceEEEEEcCCCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 740 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
....+++ +++.+++++ .++.+.+|++............ +.....+... ...+...+.+++|+|||+
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~g~~~~~-----~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------IEFKGSGPDK-----ERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------EECCCCCSCT-----TTCSSCCEEEEEECTTSS
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------EEccCCCCCc-----cccCCCcceEEEECCCCC
Confidence 3455666 677666665 4688999987532110000000 0000000000 001344578899999999
Q ss_pred EEEEEe--CCeEEEEECCCCce------e-------eEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceE-
Q 001318 819 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV- 881 (1101)
Q Consensus 819 ~la~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~- 881 (1101)
+++++. ++.|++|++..... + .....+...+..++|+| |+++|++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence 877766 68999998875431 1 11223455688999999 888777776 689999999987754
Q ss_pred -eeee---cCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCC--CcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 882 -KSKL---KGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 882 -~~~l---~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
+..+ ..+.....+++|+|||++|+++..+ +.|.+|+++ +++......... + ..+..++|+|||++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~ 319 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKY 319 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCE
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCE
Confidence 2222 3344557899999999998766654 889999996 333222211221 2 25689999999999
Q ss_pred EEEE--eCCeEEEE--EcCCceeeeeccCCCCCCCeeEEEEc
Q 001318 954 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS 991 (1101)
Q Consensus 954 la~~--~d~~v~vw--d~~~~~~~~~~~~~~h~~~i~~l~~s 991 (1101)
|+++ .++.|.+| |..+++...... ..+...+.|+.|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence 8885 46889996 555676654421 1235578999886
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=6.6e-18 Score=189.51 Aligned_cols=250 Identities=10% Similarity=0.082 Sum_probs=169.9
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECC-CCceeeEecC-CCCCeEEEEEecCCCc--EEEEEe-------------cc
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD 868 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~--~lasg~-------------~d 868 (1101)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45788999999999998884499999997 7766543321 112366789999 888 455553 68
Q ss_pred CeEEEEEee-cceEeeeec----CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCC-CcccccceeeecCCCCCCCCCC
Q 001318 869 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 869 g~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
|.+.+|++. ++++...+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544443 24567899999999998887764 6789999998 65532211122111 01 35
Q ss_pred CeEEEEcCCCcEEEEE--eCCeEEEEEcC--Cceee------eeccC--CCCCC------CeeEEE-EcCCCCEEEEEEc
Q 001318 942 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACFL 1002 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~--~d~~v~vwd~~--~~~~~------~~~~~--~~h~~------~i~~l~-~spdg~~l~s~s~ 1002 (1101)
+..++|+|||++++++ .++.|.+|++. +++.. ..+.. .+|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 7899999999998884 36799999765 55542 12211 12222 588999 9999999887764
Q ss_pred CC------eEEEEEcC-CceeeeecCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEecC-CcEEEEeccCC
Q 001318 1003 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1067 (1101)
Q Consensus 1003 dg------~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~--d~~~l~s~~~d-g~v~vW~~~~~ 1067 (1101)
+. +|.+|++. +|++...... .+ .+ . ..+..++|+|. |+++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFL---SP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEE---EE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeee---ee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6765432110 00 00 0 11225889995 57888888765 89999999765
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=1.9e-17 Score=185.00 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=181.4
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 428 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 428 (1101)
.++++++++ ++++++.++.|.+||+.+++.+.... .+....+..++|+|||++++++ ..+
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~ 64 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY 64 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence 456777776 68999999999999999987765311 1122257899999999976554 568
Q ss_pred CeEEEEEccCCceeeeeeeeccc-----cCCeeEEEEcCCCCeEEEEEecCC------------CcEEEEeCCCCce---
Q 001318 429 HIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK--- 488 (1101)
Q Consensus 429 ~~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~--- 488 (1101)
+.|.+||+.+++...... + ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 65 ~~i~~~d~~t~~~~~~~~-~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 140 (349)
T 1jmx_B 65 GDIYGIDLDTCKNTFHAN-L-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 140 (349)
T ss_dssp TEEEEEETTTTEEEEEEE-S-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred CcEEEEeCCCCcEEEEEE-c-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence 999999999987654321 1 22 23488999999999 56666644 8999999998543
Q ss_pred EEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCC---------------------C---cee
Q 001318 489 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WCT 544 (1101)
Q Consensus 489 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~v~ 544 (1101)
+..+.. ...+.+++|+ ++|+ ++.++ +.|.+||..+++....+.... . ...
T Consensus 141 ~~~~~~-~~~~~~~~~s--~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 141 VRTFPM-PRQVYLMRAA--DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp SEEEEC-CSSCCCEEEC--TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eeeccC-CCcccceeEC--CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence 344443 3357777774 5556 55554 449999998877665554331 0 234
Q ss_pred EEEEccCCceE---------E---e-----------ccccCceeEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEc
Q 001318 545 TMAYSADGTRT---------Y---Q-----------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 545 ~~~~s~~~~~~---------~---~-----------~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
.+++++++... + . .........++++| ++++++++ ++.|++||+.+++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence 45555543210 0 0 00122456778899 99999888 8899999999999888876
Q ss_pred CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccc
Q 001318 601 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 644 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 644 (1101)
... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 293 ~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 293 LDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp CSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred CCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 433 3678999999999998888999999999887 444444
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=2.1e-16 Score=176.10 Aligned_cols=221 Identities=12% Similarity=0.072 Sum_probs=155.7
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceE
Q 001318 807 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV 881 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~ 881 (1101)
....++++|||++|+++. ++.|.+||+.+++.+.+ +.. . ....+.+.|.+...+++.+.||.+.+|++.. ++.
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence 456688999999988875 36899999999988877 552 2 2233567784557788889999999999865 554
Q ss_pred e------eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCC------CCCCCCCCCeEEEEcC
Q 001318 882 K------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 882 ~------~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~ 949 (1101)
. ..+..+..++ .+.+++++..++..+.++.|.+||+............... +.. ......++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~ 263 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR 263 (361)
T ss_dssp EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence 4 1223333332 3455788888888888999999999764322111111110 000 01223479999
Q ss_pred CCcEEEEE-e-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc--e
Q 001318 950 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1015 (1101)
Q Consensus 950 dg~~la~~-~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~--~ 1015 (1101)
|++.++++ . .+.|.+||+.+++.+..+.. +. +.+++|+|||++|++++. ++|.|||..++ +
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 98888874 3 24899999999999998874 23 999999999999998886 99999999999 9
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
.+.++. ..| -.|..++++| ||.
T Consensus 339 ~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 339 LLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 888763 112 3355799999 453
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1.3e-16 Score=181.17 Aligned_cols=175 Identities=9% Similarity=0.041 Sum_probs=114.5
Q ss_pred ccCCCCCeEE-----EEEecCCCeEEEEEc-CC--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC
Q 001318 403 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 474 (1101)
Q Consensus 403 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~ 474 (1101)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 899999999999987 66 48888999887544 2345656666789999999 6888888
Q ss_pred CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 475 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
++.|++||+.+++....+..+...+....|..++++.+++....++ ... .+....
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-------~~~------------------~~~~~~ 155 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR-------EDW------------------VPLTDW 155 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG-------GGC------------------CCCCSH
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC-------ccc------------------cccccc
Confidence 8999999999998877776666655555554466666665422110 000 000000
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCC
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTND 626 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 626 (1101)
.... ..+....+..|++||+.+++........ ..+..++|+| ||+.|+....+
T Consensus 156 --~~~~--------------~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~~~~~~sp~dg~~l~~~~~~ 209 (388)
T 3pe7_A 156 --KKFH--------------EFYFTKPCCRLMRVDLKTGESTVILQEN---QWLGHPIYRPYDDSTVAFCHEG 209 (388)
T ss_dssp --HHHH--------------HHGGGCCCEEEEEEETTTCCEEEEEEES---SCEEEEEEETTEEEEEEEEECS
T ss_pred --chhh--------------hhhccCCcceEEEEECCCCceEEeecCC---ccccccEECCCCCCEEEEEEec
Confidence 0000 0011223467899999988765554422 2477899999 99998877653
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.1e-16 Score=179.41 Aligned_cols=250 Identities=10% Similarity=0.020 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCcccccc-ccCCCCCCCCeeEEEEecCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~s~dg 817 (1101)
..+..++|+|+|++|++++.+ .+.+|++.. +|.+... .... + +.+.+++|+|||
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg 94 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT 94 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence 467789999999988888877 899998741 1111100 0000 1 124568899999
Q ss_pred CE--EEEE--------------eCCeEEEEECC-CCceeeEec----CCCCCeEEEEEecCCCcEEEEEec-cCeEEEEE
Q 001318 818 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 875 (1101)
Q Consensus 818 ~~--la~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 875 (1101)
++ ++++ .++.+.+|++. +++....+. .+...+.+++|+| ||++|++++. ++.|++||
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR 173 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence 94 4444 36889999997 466544433 2456799999999 8888877664 67999999
Q ss_pred ee-cceEe--eeec--CcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCC--Cccccc-ceeeecCCCC-CCCCC-----
Q 001318 876 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGR-TPTAQ----- 940 (1101)
Q Consensus 876 ~~-~~~~~--~~l~--~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~--~~~~~~-~~~~~~~~~~-~~~~~----- 940 (1101)
+. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|+++ +++... ...+...... .....
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 253 (365)
T 1jof_A 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG 253 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence 98 67543 3333 24566899999999999988775 6899999876 343211 1112222111 10001
Q ss_pred -CCeEEE-EcCCCcEEEEE--eCC-----eEEEEEcC-Cceeeeecc-CCCCCCCeeEEEEcC---CCCEEEEEEcC-Ce
Q 001318 941 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1005 (1101)
Q Consensus 941 -~v~~~~-~s~dg~~la~~--~d~-----~v~vwd~~-~~~~~~~~~-~~~h~~~i~~l~~sp---dg~~l~s~s~d-g~ 1005 (1101)
.+..++ |+|||++|+++ .++ .|.+|++. +++...... ...+...+..++|+| ||++|++++.+ +.
T Consensus 254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 367899 99999998773 333 89999996 565443211 112345677899999 89999988865 89
Q ss_pred EEEEEcCCc
Q 001318 1006 VCVFSAANL 1014 (1101)
Q Consensus 1006 v~vwd~~~~ 1014 (1101)
|.||+++..
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999999776
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.8e-16 Score=179.96 Aligned_cols=252 Identities=13% Similarity=0.014 Sum_probs=160.2
Q ss_pred eeecccCCCCcEE-----EEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCe
Q 001318 338 VTRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 410 (1101)
Q Consensus 338 ~~~~~~h~~~v~~-----~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 410 (1101)
+.++..|...... .+|||||++|++++..+| .|.+||+.+++... +..+|...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344445555555 899999998555544467 48888998887654 345566666
Q ss_pred EEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEE--EcCCCCeEEEEE-----------------
Q 001318 411 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT----------------- 471 (1101)
Q Consensus 411 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~--~s~d~~~~~l~s----------------- 471 (1101)
..++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 678999999999999999999999999987544 2334445454444 489998 4442
Q ss_pred -----ecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCCC
Q 001318 472 -----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG 540 (1101)
Q Consensus 472 -----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~ 540 (1101)
.+.+..|.+||+.+++... +..+...+..+.|++. +|..|+.++.+ ..|.++|....... .+..+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~ 235 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA 235 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred hhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence 2345789999999987544 4446667888888540 56777776653 36777777654332 222222
Q ss_pred --CceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CC----CcEEEEECCCCceeEEEcCCC--CC-CCcCe
Q 001318 541 --RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD----FSIKFWDMDSVQLLTSIDADG--GL-PASPR 610 (1101)
Q Consensus 541 --~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~ 610 (1101)
..+....|+||| +.|+..+ .+ ..|++||+.+++......... +. .....
T Consensus 236 ~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 236 EGESCTHEFWVPDG---------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp TTEEEEEEEECTTS---------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCcccccceECCCC---------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 134444555555 4454433 22 239999999987543322111 00 01233
Q ss_pred EEEccCCCEEEEE---------eCCCcEEEEEecCc
Q 001318 611 IRFNKDGCLLAVS---------TNDNGIKILATSDG 637 (1101)
Q Consensus 611 ~~~s~~~~~l~~~---------~~dg~i~iw~~~~~ 637 (1101)
++|+|||+.|+.. ..+..|++||+.++
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 5799999988864 44568999998776
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=4e-15 Score=165.66 Aligned_cols=304 Identities=10% Similarity=0.095 Sum_probs=193.4
Q ss_pred CCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe----------cCCcEEEEecCCCCceeeecCCCCce
Q 001318 474 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC 543 (1101)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~v 543 (1101)
.|+.|.+||..+++.+.++..+..+ .++| ++++++++++. .++.|.+||..+.+....+.......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 4789999999999999888776665 6776 56778888876 36789999998766655443221000
Q ss_pred eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE-EcCCCCCCCcCeEEEccCC-CE
Q 001318 544 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL 619 (1101)
Q Consensus 544 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~ 619 (1101)
........++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..
T Consensus 105 ---------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~ 165 (361)
T 2oiz_A 105 ---------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS 165 (361)
T ss_dssp ---------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE
T ss_pred ---------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee
Confidence 00012334666777778888763 68999999999988877 65321 2235677865 67
Q ss_pred EEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCcccccc
Q 001318 620 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 699 (1101)
Q Consensus 620 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1101)
+++.+.||.+.+|+.....+..... +.
T Consensus 166 ~~~~~~dg~~~~v~~~~~g~~~~~~--~~--------------------------------------------------- 192 (361)
T 2oiz_A 166 FMTICGDGGLLTINLGEDGKVASQS--RS--------------------------------------------------- 192 (361)
T ss_dssp EEEEETTSSEEEEEECTTSSEEEEE--EC---------------------------------------------------
T ss_pred EEEECCCCcEEEEEECCCCcEeeec--cc---------------------------------------------------
Confidence 8888899999999886521222100 00
Q ss_pred CccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCcee
Q 001318 700 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT 779 (1101)
Q Consensus 700 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 779 (1101)
..+|+... .. ..+.+++++..++..+.++.+.++|+...... ..
T Consensus 193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~----~~ 236 (361)
T 2oiz_A 193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK----VD 236 (361)
T ss_dssp -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE----EE
T ss_pred -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce----ec
Confidence 00011000 00 00111334444444455566666665321100 00
Q ss_pred eeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEECCCCceeeEecCCCC
Q 001318 780 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP 847 (1101)
Q Consensus 780 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~ 847 (1101)
..|............ .......++++||++.++++. .+.|.+||+.+++.+.++..+.
T Consensus 237 -----~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 237 -----GPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp -----EEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred -----ccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 001111100000000 011122378999988877653 2379999999999999998776
Q ss_pred CeEEEEEecCCCcEEEEEeccCeEEEEEeecc--eEeeeecCcccCeeEEEEcCCCC
Q 001318 848 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN 902 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 902 (1101)
+.+++|+| |+++|++++. +.|.|||..++ +.+.++..+...-..++++|||.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 8889988886 99999999999 99999877777788999999985
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=3.2e-15 Score=164.67 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=184.9
Q ss_pred CCCeeEEEEecCCCEEEEEe-C------------------------CeEEEEECCCCceeeEec-CCCCCeEEEEEecCC
Q 001318 805 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 858 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 858 (1101)
-..+.+++++++|+++++.. + +.|.+||..+++.+..+. ++......+++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999999888877664 3445789999999 8
Q ss_pred CcEEEEEeccCeEEEEEeecce-Eeeee---------cCcccCeeEEEEcC-CCCEEEEEe-CCCceEEEeCCCcccccc
Q 001318 859 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 926 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~D~~v~iwd~~~~~~~~~ 926 (1101)
++++++...++.|++||..... .+..+ .++.....+|+|+| +|.++++.+ .++.|++|+.+. .....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999975432 44444 34555789999999 788888886 689999999543 32111
Q ss_pred eeeecCCCC---CCCCCCCeEEEEcCC-CcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC------CCC
Q 001318 927 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DSQ 995 (1101)
Q Consensus 927 ~~~~~~~~~---~~~~~~v~~~~~s~d-g~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp------dg~ 995 (1101)
. .....+. .........++++|+ |.++++ ..++.|++||..+++.+..+....+...+.+++|+| +|+
T Consensus 181 ~-~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 W-GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp E-CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred e-ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 1 0000000 001124689999999 666565 377899999999999988887666778899999999 333
Q ss_pred EEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 996 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 996 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
.+++.+.+..|++||..+++.+..+... .+ ..-.|..++++| +|.++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 3333334558999999999998876521 11 112355899999 6788999999999999998653
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=8.2e-14 Score=162.69 Aligned_cols=332 Identities=12% Similarity=0.112 Sum_probs=218.9
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEec--Cccccccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA 651 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~ 651 (1101)
..+++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. ++ +.+..+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------ 237 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------ 237 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence 356677789999999999999998887432 35689999999999999999999999985 33 2221110
Q ss_pred cccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccc
Q 001318 652 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 731 (1101)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 731 (1101)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T 1qks_A 238 -------------------------------------------------------------------------------- 237 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceEEEEEc----CCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCC-C
Q 001318 732 LPENLRATKISRLIFT----NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E 805 (1101)
Q Consensus 732 ~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-~ 805 (1101)
.......++|+ |||++++++.. ++.+.++|..+. +.+....+.-..... . ..| .
T Consensus 238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~-~--------~~~p~ 297 (567)
T 1qks_A 238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDE-Q--------EYHPE 297 (567)
T ss_dssp -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTT-C--------CEESC
T ss_pred -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEecccccccc-c--------cccCC
Confidence 11234678999 69998887776 488999885331 111111000000000 0 001 2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee--EecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~ 880 (1101)
..+..+..++++..+++.. .|.|.++|..+.+.+. .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence 2577889999887666654 5999999988654322 222 234566889999 888776665 67899999999998
Q ss_pred EeeeecC-----cccCeeEEEEcCCCCE-EEEEe-CCCceEEEeCCCcccc--cceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 881 VKSKLKG-----HSKRITGLAFSHALNV-LVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 881 ~~~~l~~-----h~~~V~~l~~s~dg~~-l~s~s-~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
++..+.- |.+.-.. -++|++.. .++.. .+++|.++|..+.+.. ....++...... ..-..+.++|++
T Consensus 376 l~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~ 451 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS 451 (567)
T ss_dssp EEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred EEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence 8776643 4332222 25787544 44543 4689999999873210 011222222111 122557899999
Q ss_pred cEEEEEe--------CCeEEEEEcCCc---------eeeee--cc-CCCCCCCeeEEEEcCCCCEEEEEE-----cCCeE
Q 001318 952 IHFLVVH--------ETQLAIFETTKL---------ECVKQ--WV-PRESSAPITHATFSCDSQLVYACF-----LDATV 1006 (1101)
Q Consensus 952 ~~la~~~--------d~~v~vwd~~~~---------~~~~~--~~-~~~h~~~i~~l~~spdg~~l~s~s-----~dg~v 1006 (1101)
+++.+.. .++|.+||+.+. +.+.. |. .......+..+.|+|||+.+..+. .++.|
T Consensus 452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i 531 (567)
T 1qks_A 452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL 531 (567)
T ss_dssp SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence 9999854 359999999887 22211 11 111245789999999999877664 37899
Q ss_pred EEEEcCCceeeeecC
Q 001318 1007 CVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1007 ~vwd~~~~~~~~~~~ 1021 (1101)
.|+|..+++++.+++
T Consensus 532 ~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 532 VVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCceEEEEeC
Confidence 999999999998877
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=1.8e-14 Score=155.48 Aligned_cols=243 Identities=11% Similarity=0.116 Sum_probs=177.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC------CCCCeEEEEEecCCCcEEEEEec-cCeEEEEE
Q 001318 804 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 875 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd 875 (1101)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+.. +...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456689999999999888776 7999999987 566666532 33568899995327777776644 89999999
Q ss_pred eecceEeeeec-CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 876 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 876 ~~~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+...... ..+.. .++. ..+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~-~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGC-SKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCC-CCcc---CCcEEEEECCCCCEE
Confidence 5677666664 3446789999999999888888889999999754211 11111 1111 357899999999977
Q ss_pred EEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-eEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 955 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 955 a~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+... .
T Consensus 179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~----~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK----V---- 248 (286)
T ss_dssp EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES----S----
T ss_pred EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc----C----
Confidence 774 68899999984 55555555444456889999999999888887776 9999995 56666655411 1
Q ss_pred CCccceEEEEeCCCCCEEEEEecCCcEEEEeccCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
....+.+++++| +++++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112345899999 6777666 67999999998653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.2e-14 Score=160.04 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=184.3
Q ss_pred CCCcEEEEEecCCCeEEEEEecC------------------------CcEEEEeCCCcceeEeeeeeeeecCCCCccccc
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 400 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1101)
-+.+.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36799999999998 57777766 4799999988876542
Q ss_pred ccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc-eeeeeeee------ccccCCeeEEEEcC-CCCeEEEEEe
Q 001318 401 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI------DAHVGGVNDIAFSH-PNKQLCVITC 472 (1101)
Q Consensus 401 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l------~~h~~~V~~~~~s~-d~~~~~l~s~ 472 (1101)
.-.++-.....++++|+|+++++...++.|++||..... .+..+... .++......++|+| ++. ++++.
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv~d 161 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFVSD 161 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC--EEEEE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe--EEEEe
Confidence 122455678999999999988888889999999987642 22211000 34555789999999 666 67777
Q ss_pred c-CCCcEEEEeCCCCceEEEecC----------cccCeEEEeeeecCC-ccEEEEEecCCcEEEEecCCCCceeeec--C
Q 001318 473 G-DDKTIKVWDATNGAKQYIFEG----------HEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDYE--A 538 (1101)
Q Consensus 473 ~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~v~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~ 538 (1101)
+ .++.|++|| .+|+.+..+.. +......+++. ++ +.++++...++.|++||..+++....+. .
T Consensus 162 ~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 162 GYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp CSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred CCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 6 689999999 77888877742 23347888875 44 5788888889999999998766665553 2
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC-CCCCCCcCeEEEccCC
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG 617 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~ 617 (1101)
....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|+|
T Consensus 239 ~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 239 FGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred cCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 344566666666 32 1112333344445667999999999999888742 2334457899999999
Q ss_pred CEEEEEeCCCcEEEEEecC
Q 001318 618 CLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 618 ~~l~~~~~dg~i~iw~~~~ 636 (1101)
.++++...++.|++|++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEESSSCCEEEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCc
Confidence 8888888899999999864
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=2e-15 Score=171.75 Aligned_cols=297 Identities=10% Similarity=0.054 Sum_probs=184.3
Q ss_pred CeEEEEEecCCCeEEEEEcC---CeEEEEEccCCceeeeeeeeccccCC-eeEEEEcCCCCeEEEEEecCCCcEEEEeCC
Q 001318 409 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT 484 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~ 484 (1101)
.+.+++|||||++|+.+..+ ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|++||+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE 110 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence 47889999999999887653 478889998876433 3333333 33488999999 67788888899999999
Q ss_pred CCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCce
Q 001318 485 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 564 (1101)
Q Consensus 485 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~ 564 (1101)
+++.......+.. | .++|..|+..+.++...+|.. ...++|+++
T Consensus 111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~----------- 154 (396)
T 3c5m_A 111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS----------- 154 (396)
T ss_dssp TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence 8887665554433 2 233355665555555554431 122344443
Q ss_pred eEEEEcCCCCEEEEE-----eCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeCCC------cEEEE
Q 001318 565 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL 632 (1101)
Q Consensus 565 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw 632 (1101)
.++.. ..+..|++||+.+++....... ...+..+.|+| +++.|+..+.++ .|.+|
T Consensus 155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (396)
T 3c5m_A 155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV 221 (396)
T ss_dssp ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence 34332 3566899999998876655532 23477899999 788777765432 35555
Q ss_pred EecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCc
Q 001318 633 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK 712 (1101)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 712 (1101)
++.++ .. +.+
T Consensus 222 d~~~~-~~-~~l-------------------------------------------------------------------- 231 (396)
T 3c5m_A 222 NEDGS-NV-RKI-------------------------------------------------------------------- 231 (396)
T ss_dssp ETTSC-CC-EES--------------------------------------------------------------------
T ss_pred ECCCC-ce-eEe--------------------------------------------------------------------
Confidence 54332 10 000
Q ss_pred ceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecC-----ceEEeeeccccccCCCCceeeeecCccc
Q 001318 713 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW 787 (1101)
Q Consensus 713 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~lw 787 (1101)
. .......+..++|+|+|+.|+..+.+ +.|++||+.
T Consensus 232 ------------------~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~------------------- 272 (396)
T 3c5m_A 232 ------------------K--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE------------------- 272 (396)
T ss_dssp ------------------S--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT-------------------
T ss_pred ------------------e--ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC-------------------
Confidence 0 00012356788999999988777654 347777653
Q ss_pred cCCCccccccccCCCCCCCCeeEEEEec-CCCEEEEEe-----------------CCeEEEEECCCCceeeEecCCCC--
Q 001318 788 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP-- 847 (1101)
Q Consensus 788 ~~~~g~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~s-----------------dg~i~vwd~~~~~~~~~~~~~~~-- 847 (1101)
++....... .. ... ++|+| ||++++++. +..|++||+.+++.. .+..+..
T Consensus 273 ---~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 273 ---TLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp ---TCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred ---CCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 332211100 11 122 88999 999888753 367999999887653 4443433
Q ss_pred ---------CeEEEEEecCCCcEEEEEec-cCeEEEEE--eecce
Q 001318 848 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYN--VRVDE 880 (1101)
Q Consensus 848 ---------~i~~l~~sp~d~~~lasg~~-dg~v~vwd--~~~~~ 880 (1101)
.+..++|+| |++.|+.++. ++...||. +.++.
T Consensus 343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEEEcccc
Confidence 256789999 7877776654 55555554 44443
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=2.3e-13 Score=158.91 Aligned_cols=328 Identities=13% Similarity=0.093 Sum_probs=211.6
Q ss_pred EEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecC--CCCceeeecCCCCcee
Q 001318 467 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCT 544 (1101)
Q Consensus 467 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~ 544 (1101)
+++++...+++|.++|..+++.+.++... ..+..+.| +++|+++++++.|+.|.+||+. +.+....+.. .....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888899999999999999999888643 34567776 5677899999999999999995 5444443332 12233
Q ss_pred EEEEccCCceEEeccccCceeEEEEc----CCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCC---------CCCcCe
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFD----TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPR 610 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~ 610 (1101)
. ++|+ |+|+++++++ .+++|.++|..+.+.+..+...+. ...+..
T Consensus 244 ~---------------------ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 244 S---------------------IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp E---------------------EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred e---------------------eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 4 4455 3555666655 569999999999998888763221 112344
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccC
Q 001318 611 IRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 689 (1101)
Q Consensus 611 ~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1101)
+..++++..+++. ..+|.|.++|..+...
T Consensus 303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-------------------------------------------------- 332 (567)
T 1qks_A 303 ILASHYRPEFIVNVKETGKILLVDYTDLNN-------------------------------------------------- 332 (567)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEETTCSSE--------------------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecCCCcc--------------------------------------------------
Confidence 5555543332222 2234444444322100
Q ss_pred CCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccc
Q 001318 690 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 769 (1101)
Q Consensus 690 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 769 (1101)
+.+..+
T Consensus 333 ------------------------------------------------------------------------~~v~~i-- 338 (567)
T 1qks_A 333 ------------------------------------------------------------------------LKTTEI-- 338 (567)
T ss_dssp ------------------------------------------------------------------------EEEEEE--
T ss_pred ------------------------------------------------------------------------ceeeee--
Confidence 000000
Q ss_pred cccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecC---
Q 001318 770 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP--- 844 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~--- 844 (1101)
........+.|+|+|++++++. +++|.++|+.+++.+..+.-
T Consensus 339 ---------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 339 ---------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp ---------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred ---------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 0122345678899999888776 68899999999887766643
Q ss_pred --CCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeec-------ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-----
Q 001318 845 --PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----- 909 (1101)
Q Consensus 845 --~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~----- 909 (1101)
|.+.-.. -++|+++.+++++. .++.|.++|..+ .+.++++......-..+.++||+++|.+...
T Consensus 386 ~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 3221222 26783355555553 468999999987 6778887765444355789999999988663
Q ss_pred --CCceEEEeCCCccc----ccceeeecC--CCCCCCCCCCeEEEEcCCCcEEEEE--e----CCeEEEEEcCCceeeee
Q 001318 910 --DSQLCVWSSDGWEK----QKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV--H----ETQLAIFETTKLECVKQ 975 (1101)
Q Consensus 910 --D~~v~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~--~----d~~v~vwd~~~~~~~~~ 975 (1101)
..+|.|+|+.+.+. .....+.+. .+-......+..+.|+++|+++.++ . ++.|.|+|.++++.+..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence 35899999987511 111222210 0000011367899999999988874 2 68999999999998887
Q ss_pred cc
Q 001318 976 WV 977 (1101)
Q Consensus 976 ~~ 977 (1101)
+.
T Consensus 545 i~ 546 (567)
T 1qks_A 545 IK 546 (567)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.5e-14 Score=176.91 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=161.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEE--ecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeE-------
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 411 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------- 411 (1101)
+.+|...|..++|++++-+ ++++ +.++...||....+.... .+..|...|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 5568999999999988653 5555 457889999964443332 1445555555
Q ss_pred --EEEEe--cCCCe-EEEEEc-CCeEEEEEcc--C-Cceeeeeeeecc-----ccCCeeEEEEcCCCCeEEEEEecCC--
Q 001318 412 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 475 (1101)
Q Consensus 412 --~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~~~~s~d~~~~~l~s~~~d-- 475 (1101)
..+|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|+.++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 56666 99999 776654 4567777765 3 43 22 2444 677899999999999 56666665
Q ss_pred --------CcEEEEeCCC------CceEEEec-CcccCeEEEeeeecCCccEEEEEecCC--------cEEEEecC-CCC
Q 001318 476 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG 531 (1101)
Q Consensus 476 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~dg--------~i~~wd~~-~~~ 531 (1101)
..|++||+.+ ++. ..+. .+...+..++| ++||++|+.++.++ .|++||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5899999988 554 4555 55566666776 56778888877553 79999988 331
Q ss_pred --ceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEcCCCCC-
Q 001318 532 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 605 (1101)
Q Consensus 532 --~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 605 (1101)
....+ ..+.. .+..+.|+|||+++++++.++ .|++||+.+++.......+...
T Consensus 230 ~~~~~~l~~~~~~---------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEE---------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTB---------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCc---------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 21111 11122 344556666667677777777 6777777677654433322211
Q ss_pred -----CCcCeEEEccCCCEEEEEeCCCcEEEEEec
Q 001318 606 -----PASPRIRFNKDGCLLAVSTNDNGIKILATS 635 (1101)
Q Consensus 606 -----~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 635 (1101)
..+.+++|+++++++++++. +.++||.+.
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 01467889999999998888 888888543
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=2.7e-15 Score=170.71 Aligned_cols=239 Identities=12% Similarity=-0.030 Sum_probs=152.6
Q ss_pred CcEEEEEecCCCeEEEEEecCC--cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
.+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence 3788999999998655555433 68888998876543 12222223344889999999999
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccccCCeeE-------------------EEEcCCCCeEEEEEe-----cCCCcEEE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV 480 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------~~~s~d~~~~~l~s~-----~~d~~i~i 480 (1101)
++.++.|.+||+.+++... . ...+...... ++|+|+++. ++.. ..+..|++
T Consensus 98 ~~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred EEcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence 9999999999999887543 1 2223332222 356788774 3332 45678999
Q ss_pred EeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCC-CCceeEEEEccCCc
Q 001318 481 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT 553 (1101)
Q Consensus 481 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 553 (1101)
||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~------ 244 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF------ 244 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE------
T ss_pred EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE------
Confidence 999988876554 46667888888541 44556655543 35778887654322211111 11334444
Q ss_pred eEEeccccCceeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEEEcCCCCCCCcCeEEEcc-CCCEEEEEeC--
Q 001318 554 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN-- 625 (1101)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~-- 625 (1101)
|+|+|++|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 245 ---------------~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 245 ---------------WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp ---------------ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred ---------------ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 45555555555432 449999999887654433221 22 89999 9998887652
Q ss_pred --------------CCcEEEEEecCc
Q 001318 626 --------------DNGIKILATSDG 637 (1101)
Q Consensus 626 --------------dg~i~iw~~~~~ 637 (1101)
++.|++||+.++
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ----------CCCCCCEEEEEETTTT
T ss_pred ceeeccccccccCCCCcEEEEecccC
Confidence 367888887665
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.1e-14 Score=178.05 Aligned_cols=333 Identities=9% Similarity=0.003 Sum_probs=198.2
Q ss_pred eccccCCeeEEEEcCCCCeEEEEEe--cCCCcEEEEeCCCCceEEEecCcccCeE---------EEeeeecCCccE-EEE
Q 001318 448 IDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IFS 515 (1101)
Q Consensus 448 l~~h~~~V~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~v~~~~~~~~~~-l~s 515 (1101)
+.+|...|..++|+++.- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 567899999999997644 67777 6688999999766666677777766655 455543477777 665
Q ss_pred Eec-CCcEEEEecC--CCCceeeecC-----CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC-----
Q 001318 516 TAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----- 582 (1101)
Q Consensus 516 ~~~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----- 582 (1101)
++. +..|.+|++. .......+.. +...+. .++|+|||+.|++++.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~---------------------~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA---------------------DPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE---------------------EEEEETTTTEEEEEEEEECSSS
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc---------------------CcEECCCCCEEEEEEecccCCC
Confidence 543 4556666554 1033333332 222333 45555555677777765
Q ss_pred -----CcEEEEECCC------CceeEEEc-CCCCCCCcCeEEEccCCCEEEEEeCCC--------cEEEEEec-Cccc-c
Q 001318 583 -----FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR-L 640 (1101)
Q Consensus 583 -----g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iw~~~-~~~~-~ 640 (1101)
..|++||+.+ ++.. .+. .+ ...+..++|||||++|+.++.++ .|++||+. ++.. .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999988 5543 333 22 23577899999999999887553 67888776 3310 0
Q ss_pred ccccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccc
Q 001318 641 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 720 (1101)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~ 720 (1101)
...+.
T Consensus 233 ~~~l~--------------------------------------------------------------------------- 237 (662)
T 3azo_A 233 TRTLL--------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred cEEeC---------------------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC
Q 001318 721 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~ 800 (1101)
..+...+..+.|+|||+.++++..++...||.+. ..++..... ..
T Consensus 238 --------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~ 282 (662)
T 3azo_A 238 --------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR 282 (662)
T ss_dssp --------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred --------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence 1134567889999999977777667744444332 111211110 00
Q ss_pred CC------CCCCCeeEEEEecCCCEEEEEeCCeEEEE--ECCCCceeeEecCCCCCeEEE-EEecCCCcEEEEEeccC--
Q 001318 801 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS-- 869 (1101)
Q Consensus 801 ~~------~~~~~i~~~~~s~dg~~la~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg-- 869 (1101)
.. .-.-.+..++|++++++++++..+.++|| |..+++ +..+..+...+..+ +++. +.-++++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence 00 00111467899999999888876667777 655554 67777777777777 5554 333444445554
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 4555566677654443445444444444444444444433445655544
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.65 E-value=2e-10 Score=142.67 Aligned_cols=553 Identities=9% Similarity=0.083 Sum_probs=313.7
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|.++...++|. |-.|+.+ -+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999998 4445554 489999877653321 000 0000012889999998887664
Q ss_pred EEcCCeEEEEEccCCceeeeeeeeccc-cCC-eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEE
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS 501 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 501 (1101)
. . +.|..||..+++... . ..++ ... |.++...+++. +..++.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 3 458899987764321 1 0111 123 88898888886 334555556889998777654321 123456777
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+.. +.++. +..++.++-+..||..+..... +...... +. ......+.++...++|. +..|..
T Consensus 220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~-------~~------~l~~~~i~~i~~d~~g~-lWigt~ 281 (795)
T 4a2l_A 220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIKN-YLHSPSN-------PK------SISSNYIRSLAMDSQNR-LWIGTF 281 (795)
T ss_dssp EEE--EETTE-EEEEEBSSCEEEEETTTTEEEE-ECCCTTC-------TT------SCSCSBEEEEEECTTSC-EEEEES
T ss_pred EEE--cCCCC-EEEEECCCCeEEEeCCCCeEEE-eecCCCC-------cc------ccCCCeEEEEEEcCCCC-EEEEeC
Confidence 765 34444 4455544458888876543221 1110000 00 00112344455555555 444555
Q ss_pred CCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCC
Q 001318 582 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 656 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1101)
+ -|.+|+..+++........ -....|.++...++|.+. +|+.++-|..|+..++ . +..+.....
T Consensus 282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~~------- 350 (795)
T 4a2l_A 282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRN-R-FKNIRNIPY------- 350 (795)
T ss_dssp S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence 5 6899998877644332111 012357888888888754 5667777888875443 1 111100000
Q ss_pred CCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccc
Q 001318 657 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 736 (1101)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 736 (1101)
+...
T Consensus 351 ----------------------------------------------------------------------------~~~l 354 (795)
T 4a2l_A 351 ----------------------------------------------------------------------------KNSL 354 (795)
T ss_dssp ----------------------------------------------------------------------------SSSC
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0000
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....|.++...++|. |-.++.++-+..|+.....+. .+....+.. ...-....|.+++..++
T Consensus 355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCEEEEEEETT
T ss_pred CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccEEEEEEcCC
Confidence 235688888888887 555666666777765322110 000000000 00002456899999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEec----CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec-----
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK----- 886 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~----- 886 (1101)
|+.|.+|+ ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-+.+||..+++......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence 98455555 6889999998766433221 1245689999888 676555 444 458889987765443221
Q ss_pred -CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEE
Q 001318 887 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 965 (1101)
Q Consensus 887 -~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vw 965 (1101)
-+...|.++...++|.+.+... + -|..|+..++.. ...............|.++..+++|.+.+.+.. .+..|
T Consensus 494 ~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~ 567 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF 567 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred ccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence 1236789999999988776554 4 488898876542 111000000111246789999999997766554 78899
Q ss_pred EcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeC
Q 001318 966 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 966 d~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 1044 (1101)
|..+++....-...+ ....|.++...++|.+.+++ ++-|..||..+++.. .+....-++. .....-++...+
T Consensus 568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~ 640 (795)
T 4a2l_A 568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS 640 (795)
T ss_dssp ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence 988776543211112 14568999999999876654 455778998877654 3332222221 112222455555
Q ss_pred CCCCEEEEEecCCcEEEEeccC
Q 001318 1045 QEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+|. |..|+.+| +..++...
T Consensus 641 -~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 641 -VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp -TSC-EEEEETTE-EEEECGGG
T ss_pred -CCe-EEEecCCc-eEEEcHHH
Confidence 555 55566666 56667654
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.5e-13 Score=148.28 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=174.3
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEe-cCCCe
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSL 421 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~ 421 (1101)
++-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+..... .....+|...+.+++++ ++|++
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l 91 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDI 91 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeE
Confidence 3556789999999998 68888889999999987 444332100 00112455678999995 67777
Q ss_pred EEEEEc-CCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec--CcccC
Q 001318 422 FGVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 498 (1101)
Q Consensus 422 las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~ 498 (1101)
+++... ++.|.+|| .+++.+... -..+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~--~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKF--GATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEE--CTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEe--cCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 766644 89999999 455544422 123456789999999998 7788888899999994 566666664 34556
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
+..+++ +++|.++++...++.|++||... +....+..... ......++++++|+++++
T Consensus 166 p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 888887 45667778878899999999743 33333322110 013445666677777777
Q ss_pred EeCCC-cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 579 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 579 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
...++ .|.+|+. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 77775 9999995 5667777765444334678999999987776 67899999987543
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=4e-10 Score=140.08 Aligned_cols=546 Identities=10% Similarity=0.078 Sum_probs=317.1
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|+++.-.++|. +-.|+.+| +..||-.+ |+.+...... . ..-....|.+|...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDD----P--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCC----C--CcccccceeEEEECCCCCEEE-
Confidence 45799999999996 55677766 45666432 2222110000 0 001245799999999987665
Q ss_pred EEcCCeEEEEEccCCceeeeeeeecccc----CCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCc-ccC-
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 498 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 498 (1101)
|+.+| +..||..+++... +.... ..|.++...++|. +.+ ++. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 8999988764322 21111 1288999888887 444 333 45889998776543211111 123
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeec-CCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
|.++.. +.++. +..++.++-|..|+..+........ .... .+..+...+++. +.
T Consensus 175 i~~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW 229 (795)
T ss_dssp CEEEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred eEEEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence 777765 34444 4446665568888876543221110 0112 333444444444 55
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
.++.++.|.+||..+++........ -....|.++...++|.+.+ |+.+ -|.+|+..++ ... .+.....
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~~-~~~~~~~--- 302 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SFA-SYSSNPV--- 302 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EEE-EECCCTT---
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eEE-EEecCCC---
Confidence 5555555899998876544332211 0123578888888887655 4444 5888886654 111 1100000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
...
T Consensus 303 -------------------------------------------------------------------------~~~---- 305 (795)
T 4a2l_A 303 -------------------------------------------------------------------------ENG---- 305 (795)
T ss_dssp -------------------------------------------------------------------------STT----
T ss_pred -------------------------------------------------------------------------CCC----
Confidence 000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
......|.++...++|. |-.++.++-+..|+.....+. .+..... ...-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~-------~~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY-------KNSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT-------SSSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC-------CCCCCCCeeEEEE
Confidence 01345788999999988 555666666676765332210 0000000 0001345699999
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEecC--------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
..++|.+.+...++.|..||..+++....... ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 99998866644477899999887654332211 235689999988 777566688877899999887664332
Q ss_pred ec----CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 885 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 885 l~----~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
.. .+...|.++...++|.+.+... +| +.+|+..+++....... ..........|.++...++|...+.+. +
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 21 2345799999988888666554 44 89999877543211100 000011124688999999999877766 6
Q ss_pred eEEEEEcCCceeeeeccC-----CCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCc
Q 001318 961 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~-----~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
.|..||..+++. . +.. ......|.++...++|++.++. .. -|..||..+++... +....-++. ..+
T Consensus 518 Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~----~~i 588 (795)
T 4a2l_A 518 GLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPN----NVV 588 (795)
T ss_dssp CEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSC----SCE
T ss_pred ceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCch----hhe
Confidence 788999887765 2 210 0124579999999999876644 34 58889988776543 332222322 224
Q ss_pred cceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1036 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1036 ~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
. ++...+ +|++.+++ ++.|..|+..+++
T Consensus 589 ~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 589 Y--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp E--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred E--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 4 666666 56655554 4567778876654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=1.2e-13 Score=153.83 Aligned_cols=220 Identities=10% Similarity=0.089 Sum_probs=152.9
Q ss_pred CeeEEEEecCCCEEEEEe-C---Ce--EEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-------------
Q 001318 807 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD------------- 867 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~------------- 867 (1101)
.+..++|||||++|+..+ + +. |++||+.+++.......+ . +..++|+| |++.|+.++.
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 477899999999999876 3 33 888899887765544433 3 99999999 8888887764
Q ss_pred --------------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC-------ceEEEeCCCcccccc
Q 001318 868 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 926 (1101)
Q Consensus 868 --------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-------~v~iwd~~~~~~~~~ 926 (1101)
...|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--- 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--- 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---
Confidence 25799999988887455554 3 78999999999 877776542 445665554332
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeC--------CeEEEEEcCCceeeeeccCCCCCCCeeE-EEEcCCCCE
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 996 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d--------~~v~vwd~~~~~~~~~~~~~~h~~~i~~-l~~spdg~~ 996 (1101)
..+. .+ ..+.. ++|||++|+. +.+ ..|.+|| +++..... .+|...+.. +.|+ || +
T Consensus 211 ~~l~--~~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 211 EKMF--EK-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEEE--EE-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-E
T ss_pred EEec--cC-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-E
Confidence 1111 11 12333 3999998887 433 3688888 55544333 255677886 9999 98 9
Q ss_pred EEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcE-EEEecc
Q 001318 997 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1065 (1101)
Q Consensus 997 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v-~vW~~~ 1065 (1101)
+++++.++.++|| +.+++....+. + ...+. .++|+| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88766543322 1 12244 788887 577777777765 788776
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=8.4e-13 Score=143.05 Aligned_cols=242 Identities=10% Similarity=0.073 Sum_probs=167.8
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
+..+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++|+|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCCc
Confidence 34566778999999999977899999999999999887 22 1334567899999999999
Q ss_pred eEEEEEcCCeEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEE----ec-------------CCCcEEEEe
Q 001318 421 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVWD 482 (1101)
Q Consensus 421 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s----~~-------------~d~~i~iwd 482 (1101)
++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888877789999999988764332111111 123578899999998 6776 33 134566666
Q ss_pred CCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCce----eeecCCCCceeEEEEccCCceEEec
Q 001318 483 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 558 (1101)
Q Consensus 483 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~ 558 (1101)
.. ++ +..+..+......++| +++++.+++.+.++.|.+|++...... ..+...
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------------------- 216 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE------------------- 216 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-------------------
T ss_pred CC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-------------------
Confidence 54 44 3445556667788888 456677777788899999998732221 111111
Q ss_pred cccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEE-ccCCCEEEEEeCCCcEEEEEecCc
Q 001318 559 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
......++++++|++.++. ++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 217 --~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 217 --PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp --SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred --CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 1123346677777755555 8899999986 777777765433 788999 5899999998875 3444454443
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=4.3e-13 Score=148.26 Aligned_cols=274 Identities=12% Similarity=0.086 Sum_probs=182.0
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..|.+++|++++..++..+.++.++.|.-. ... .+. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~-~~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWL-EIS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEE-EEE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeE-EEe--ccCccccCcEECCCCC
Confidence 456677888888877777777777776210 000 011 1445678999999999
Q ss_pred EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecceEeeeec--CcccC
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 891 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~ 891 (1101)
+++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..++.....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 777777 78999999988876655545667899999999 88888877666 689999988766443332 24467
Q ss_pred eeEEEEcCCCCEEEEEeC------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEE
Q 001318 892 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 963 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~ 963 (1101)
+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|+|+.++++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887654 2445555555433211 11111 245789999999876653 468999
Q ss_pred EEEcCC-ceeeee-----c-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCcc
Q 001318 964 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1036 (1101)
Q Consensus 964 vwd~~~-~~~~~~-----~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1036 (1101)
+||+.+ +..+.. . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..++ ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999964 332211 1 11122 46788999999998888878899999998 5666665541110 0011 012
Q ss_pred ceEEEEeCCCCCEEEEEecCC
Q 001318 1037 PLVIAAHPQEPNEFALGLSDG 1057 (1101)
Q Consensus 1037 ~~~i~~~~~d~~~l~s~~~dg 1057 (1101)
+..++|+| |++.|+.++.++
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECG
T ss_pred cceEEECC-CCCEEEEEeCcc
Confidence 44899988 566666555553
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=1e-12 Score=142.99 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=141.6
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-ceEee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~ 883 (1101)
...++|+|||++++++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 45688899999888775 4789999999999998886322 1 233433 666777888899998888876 55432
Q ss_pred eecCc----ccCee-EEEEc-CCCCEEEEEeCCCceEEEeCCCcccccceeeecC------CCCCCCCCCCeEEEEcCCC
Q 001318 884 KLKGH----SKRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 884 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg 951 (1101)
....+ ..++. ...|. ++|++++ .+.+++|.+.|+.+........+..+ .+-. ......+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence 21111 12222 24664 6776555 55689999999977542221112111 1110 1244568889999
Q ss_pred cEEEEE-e----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeee
Q 001318 952 IHFLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 952 ~~la~~-~----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~ 1018 (1101)
+.+.+. . .+.|.++|+.+++.+..+.. ...+.+|+|++|++ +|+++. .++.|.|+|..+++.+.
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 998884 2 14799999999999998875 34788999999997 666654 48999999999999999
Q ss_pred ecC
Q 001318 1019 RIN 1021 (1101)
Q Consensus 1019 ~~~ 1021 (1101)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=3.6e-13 Score=149.87 Aligned_cols=222 Identities=12% Similarity=0.120 Sum_probs=145.1
Q ss_pred CCcEEEEEecCCCeEEEEEe--------cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEec
Q 001318 346 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 417 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 417 (1101)
..+..++| ||++++.+.. .++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 45677888 9997555432 25679999998876432 2 4688999999
Q ss_pred CCCeEEEEEcC---C--eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecC------------------
Q 001318 418 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 474 (1101)
Q Consensus 418 dg~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~------------------ 474 (1101)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876443 222333 999999999995 444432
Q ss_pred ---------CCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecCC-------cEEEEecCCCCceeeecC
Q 001318 475 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 538 (1101)
Q Consensus 475 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg-------~i~~wd~~~~~~~~~~~~ 538 (1101)
...|++||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.+++ .....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence 25799999999887555554 3 67778874 666 777776542 445555442 22211111
Q ss_pred CCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEcCCCCCCCcCe
Q 001318 539 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 610 (1101)
Q Consensus 539 ~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 610 (1101)
+ ..+. .++|+|++|+.++.+ ..|++|| +++....... +...+..
T Consensus 216 ~----------------------~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~~ 267 (347)
T 2gop_A 216 K----------------------VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE--VDRGVGQ 267 (347)
T ss_dssp E----------------------ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT--CCSEEEE
T ss_pred C----------------------ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc--CCcccCC
Confidence 1 1111 226777777776643 4688888 5554333332 2234665
Q ss_pred -EEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 611 -IRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 611 -~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+.|+ ++ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8899 88 88899999999999 8643
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=6.6e-13 Score=145.78 Aligned_cols=239 Identities=11% Similarity=0.122 Sum_probs=171.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.....+++. +++.+++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444444 6999999999999988885 346789999998 776555554789999999999988777
Q ss_pred ecCcc-----cCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-
Q 001318 885 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 957 (1101)
Q Consensus 885 l~~h~-----~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 957 (1101)
+.... .....+++ .+++.+++.. .+++|.+||+.+++.... +.. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567778 3444444443 488999999998764322 111 1 134678999999987774
Q ss_pred eC----------CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccC
Q 001318 958 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1027 (1101)
Q Consensus 958 ~d----------~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 1027 (1101)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... . +.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~-~---~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR-P---FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS-C---SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee-e---eec
Confidence 33 689999999998877765321 347899999999999887754 899999999886421 1 111
Q ss_pred CCCCCCCccceEEEEeCCCCCEEEEE----ecCCcEEEEeccCCCc
Q 001318 1028 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEG 1069 (1101)
Q Consensus 1028 ~~~~~~~v~~~~i~~~~~d~~~l~s~----~~dg~v~vW~~~~~~~ 1069 (1101)
.+ .-.+-.++++|+++++.++. ..++.|.+|+.. ++-
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 11 12355899999777777887 678999999997 763
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=4.1e-13 Score=142.61 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=184.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCC-CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCe
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 892 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V 892 (1101)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +++.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456788887 8999999999999999998776 4789999999 899888 45788999998 899888887653 468
Q ss_pred eEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCc
Q 001318 893 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 970 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~ 970 (1101)
.++.+.+||++|++.+. ++.|..+|.+ ++......+. .+..........+++.++|.++++. .++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 6777777763 3322221111 1100001234566889999999985 78999999998 9
Q ss_pred eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEE
Q 001318 971 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1050 (1101)
Q Consensus 971 ~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l 1050 (1101)
+.+..+.. ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+ + .....+..++..+ +|+++
T Consensus 156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence 98888764 2456778889999999999888899999999999998876211 11 1 0113345777777 67777
Q ss_pred EEEe--cC------CcEEEEec-cCCCccccCCCCCCCCCCCC
Q 001318 1051 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1084 (1101)
Q Consensus 1051 ~s~~--~d------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1084 (1101)
++.. .. +..++.++ .+++-.|......+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 7763 11 23456666 57777888776666666554
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.1e-11 Score=134.51 Aligned_cols=280 Identities=11% Similarity=0.115 Sum_probs=191.1
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+++++++|+.+++...++.|.+|+.. +......... ....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence 44678999999999977766667888888752 1111111111 3456889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEe--cCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-ecCcccCe
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRI 892 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V 892 (1101)
|.++++.. ++.|..||.. ++. ..+ ......+..+++++ +++++++...++.|.+||. +++.... +..+...+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 99888776 7889999986 332 222 23455789999999 8888887777889999998 5544322 23345678
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCce
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE 971 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~ 971 (1101)
.++++.++|++.++...++.|..||. +++... ...... ...+..++++++|+++++. .++.|.+||. +++
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 99999999988888777788999998 544221 111111 1356899999999977665 5789999999 665
Q ss_pred eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 972 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
... +....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+.++++ + ++.+.+
T Consensus 215 ~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 215 ITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWF 281 (299)
T ss_dssp EEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEE
T ss_pred EEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEE
Confidence 433 322334568999999999997776657889999998 45433 332 1111 1 12347777 5 667666
Q ss_pred EEecCCcEEEEeccCCC
Q 001318 1052 LGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1052 s~~~dg~v~vW~~~~~~ 1068 (1101)
+.. .+.+..++..+++
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=1.4e-11 Score=136.94 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=141.0
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34688999999888875 36799999 99988877 65322 24556645567777888999999999 877663
Q ss_pred eec-----CcccC-eeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcE
Q 001318 884 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 884 ~l~-----~h~~~-V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~ 953 (1101)
... ....+ .....+.+++..++..+.++.+.+.|+.+........+..... ..........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11122 2335677776665555578889999997643221111111110 0000123345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeec
Q 001318 954 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 954 la~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+.+.. .+.|.++|+.+++.+..+.. .....+++|+|||+ +|+++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 25799999999999988864 33689999999999 777777 5899999999999999874
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=5.5e-13 Score=163.65 Aligned_cols=249 Identities=10% Similarity=-0.005 Sum_probs=165.0
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCC----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
|...+..++|||||++|+.+.+.+| .|++||+.+++.+.. .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4456889999999997555544444 899999999987542 011 1136789999999
Q ss_pred CeEEEEEcCCe----------------EEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecC-----CCc
Q 001318 420 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT 477 (1101)
Q Consensus 420 ~~las~~~d~~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~-----d~~ 477 (1101)
+.|+.++.++. |++|++.+++.. ........|...+..++|||||+. |+..+. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999887632 112122335666889999999995 443332 678
Q ss_pred EEEEeCCC------Cc-eEEEecCcccCeEEEeeeecCCccEEEEEecC----CcEEEEecCCCCc--eeeecCCCCcee
Q 001318 478 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGRWCT 544 (1101)
Q Consensus 478 i~iwd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~--~~~~~~~~~~v~ 544 (1101)
|++||+.+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--- 334 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE--- 334 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence 99999987 53 456666666666543 544 44555555442 3689999877542 122222211
Q ss_pred EEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc--EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEE
Q 001318 545 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 622 (1101)
Q Consensus 545 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 622 (1101)
...+..+.+++++.++++...++. |++|++.+++.+..+..+ ...+..++++|+++.++.
T Consensus 335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 012333444444456777777874 666787778877777655 335778889999887664
Q ss_pred Ee----CCCcEEEEEecCcc
Q 001318 623 ST----NDNGIKILATSDGI 638 (1101)
Q Consensus 623 ~~----~dg~i~iw~~~~~~ 638 (1101)
.. ..++|+.||+.++.
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 43 24789999998773
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=2.9e-12 Score=157.19 Aligned_cols=245 Identities=9% Similarity=0.038 Sum_probs=169.0
Q ss_pred cccceEEEEEcCCCceEEeeecCc-----eEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 737 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+...+..++|||||++|+.+..++ .|++||+. +|......+ ....+..+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------------tg~~~~~~~----~~~~~~~~ 176 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------------GAKELPDVL----ERVKFSCM 176 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------------TTEEEEEEE----EEECSCCE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCcccc----cCcccceE
Confidence 444688999999999988776643 78877763 333322111 11225679
Q ss_pred EEecCCCEEEEEe-CCe----------------EEEEECCCCcee--eEec--CCCCCeEEEEEecCCCcEEEEEec---
Q 001318 812 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKTM--ATFM--PPPPAATFLAFHPQDNNIIAIGMD--- 867 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg~----------------i~vwd~~~~~~~--~~~~--~~~~~i~~l~~sp~d~~~lasg~~--- 867 (1101)
+|+|||+.|+.++ ++. |++|++.+++.. ..+. .+...+..++||| |+++|+.++.
T Consensus 177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~ 255 (710)
T 2xdw_A 177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC 255 (710)
T ss_dssp EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence 9999999999887 544 999999887632 2223 2455678999999 8888888765
Q ss_pred --cCeEEEEEeec------ce-EeeeecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCC
Q 001318 868 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 868 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
+..|++||+.+ +. ....+..+...+.. .|++||+.|+..+.++ .|.+||+.++.......+. ..
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~ 332 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PE 332 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CC
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CC
Confidence 56899999987 43 35666667666655 5889998887766533 5999999876421112221 11
Q ss_pred CCCCCCCCeEEEEcCCCcEEEE-EeCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE----cCCeEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLV-VHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1007 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~-~~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s----~dg~v~ 1007 (1101)
... ..+..++|++++.++++ ..++ .|.+|++.+++.+..+. .+...+..++++||+..|+... ..++|+
T Consensus 333 ~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 408 (710)
T 2xdw_A 333 HEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY 408 (710)
T ss_dssp CSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred CCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence 110 24678889877777777 4666 46778887777666655 3467889999999998666332 347899
Q ss_pred EEEcCCce
Q 001318 1008 VFSAANLK 1015 (1101)
Q Consensus 1008 vwd~~~~~ 1015 (1101)
+||+.+++
T Consensus 409 ~~d~~tg~ 416 (710)
T 2xdw_A 409 HCDLTKEE 416 (710)
T ss_dssp EEETTSSS
T ss_pred EEECCCCc
Confidence 99999887
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=1.3e-12 Score=143.43 Aligned_cols=273 Identities=10% Similarity=0.020 Sum_probs=184.2
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.++.|.++|..+.+......... ...........+.+. +++..++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~-------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN-------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT--------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc--------------------
Confidence 46889999987644322111000 001112345667774 34555555567889888763
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCC-----CCeEEEEEecCCCcEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII 862 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l 862 (1101)
+++.+... . ....+..++++++++.+++.. ++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 --t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 --TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp --TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred --ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 33332221 1 245688999999996555553 7999999999998877765332 14566777 4 66666
Q ss_pred EEEe-ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC----------CceEEEeCCCcccccceeeec
Q 001318 863 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 863 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D----------~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
++.. .++.|.+||..+++.+..+.... ....++++++|++++++..+ +.|.+||..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6654 48899999999998888776433 35789999999988877655 789999998865432 2222
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCC-CCEEEEE----EcCCeE
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-SQLVYAC----FLDATV 1006 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spd-g~~l~s~----s~dg~v 1006 (1101)
..+ .....++|+|++++|.++.. .|.+||..+++.........+......++++|+ +.++++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 24689999999999888654 999999998876432221122467899999995 5555555 568899
Q ss_pred EEEEcCCceeeeecC
Q 001318 1007 CVFSAANLKLRCRIN 1021 (1101)
Q Consensus 1007 ~vwd~~~~~~~~~~~ 1021 (1101)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 99888776
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=1.5e-12 Score=141.00 Aligned_cols=234 Identities=8% Similarity=-0.043 Sum_probs=161.5
Q ss_pred CCCCeeEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE
Q 001318 804 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 881 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~ 881 (1101)
+.....+++|+|+|+ +++++. ++.|..||..++ ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345678999999999 566666 799999999876 666766777899999999 888888777778999999977765
Q ss_pred eeeecCc----ccCeeEEEEcCCCCEEEEEeCC---------------CceEEEeCCC-cccccceeeecCCCCCCCCCC
Q 001318 882 KSKLKGH----SKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 882 ~~~l~~h----~~~V~~l~~s~dg~~l~s~s~D---------------~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
....... ...+.+++++|+|+++++.+.. +.-.||.+.. ++. .. ... .. ..
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~---~~--~~~-~~---~~ 173 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL---SA--PIR-DR---VK 173 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE---EE--EEC-CC---SS
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE---EE--eec-CC---CC
Confidence 4333221 2356789999999999873211 1124554443 221 11 111 11 24
Q ss_pred CeEEEEcCCCcEEEEE-eCCeEEEEEcC-Ccee---eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCcee
Q 001318 942 DTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1016 (1101)
Q Consensus 942 v~~~~~s~dg~~la~~-~d~~v~vwd~~-~~~~---~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~ 1016 (1101)
...++|+|||+.+++. .++.|.+|++. ++.. ...+ ..+...+.+++++++|+++++. ++.|.+||.. ++.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 5789999999998554 56899999987 4544 2333 2356678899999999976655 8899999986 777
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+..+. .+.+ +.+++|...|++.|++++.++ +.-++..+
T Consensus 249 ~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 249 LGRVL----TPQT-------TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EEEEE----CSSC-------CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred EEEEE----CCCC-------ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 76665 2211 337889533677888877653 44444443
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=3.3e-12 Score=141.09 Aligned_cols=268 Identities=10% Similarity=0.051 Sum_probs=174.8
Q ss_pred cccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 695 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 695 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
+.+.++...++....++.++.|.-.. ...+ ..+...+.+++|+++|+.+++...++.|.+|+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~------ 74 (333)
T 2dg1_A 11 LFYSGKSNSAVPIISESELQTITAEP------WLEI----SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE------ 74 (333)
T ss_dssp CCSCGGGGCSSCCCCGGGSCEEECEE------EEEE----ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT------
T ss_pred eeecCCccceeEEeecccCcccccce------eEEE----eccCccccCcEECCCCCEEEEECCCCEEEEEeCC------
Confidence 34455566666667778888883221 1111 1144567899999999977777788889888763
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C----CeEEEEECCCCceeeEec--CCCC
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMTFKTMATFM--PPPP 847 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~--~~~~ 847 (1101)
++....... .+...+.+++++++|+++++.. + +.|.+||..++.....+. .+..
T Consensus 75 ----------------~~~~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 75 ----------------TKEIKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp ----------------TCCEEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred ----------------CCcEEEEee---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 222211110 1356799999999999888776 4 589999998876543433 2345
Q ss_pred CeEEEEEecCCCcEEEEEec------cCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeCCC
Q 001318 848 AATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG 920 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~~~ 920 (1101)
.+..++++| +++++++... .+.|+.||..+++... +..+...+.+++|+|||++|+ +.+.++.|.+|++.+
T Consensus 136 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 136 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 789999999 7887776553 3556666655444332 323344578999999998664 455678999999864
Q ss_pred -cccccc---eeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCC----CCCCCeeEEEEc
Q 001318 921 -WEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR----ESSAPITHATFS 991 (1101)
Q Consensus 921 -~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~----~h~~~i~~l~~s 991 (1101)
+..... .......++ ..+..++++++|+++++. .++.|.+||.. ++.+..+... +|...+.+++|+
T Consensus 214 ~g~~~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp TSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred CCcCcccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence 221110 111111111 256789999999987774 57899999984 6655555422 122368999999
Q ss_pred CCCCEEEEEEcCC
Q 001318 992 CDSQLVYACFLDA 1004 (1101)
Q Consensus 992 pdg~~l~s~s~dg 1004 (1101)
||++.|+.++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9988777666553
No 195
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=2.5e-08 Score=123.52 Aligned_cols=609 Identities=11% Similarity=0.095 Sum_probs=323.5
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|+++.-..+|. |-.|+.+| +..||-.+ |+.+..... .. . ...-....|.+|...++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~-~~-~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQ-SS-S--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSS-CS-S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCC-CC-c--cccccccccceEEEcCCCCEEEE
Confidence 46799999999996 66667766 56677443 222211000 00 0 00011346999999988884556
Q ss_pred EEcCCeEEEEEccCCceeeeeee-ecc---ccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeCCCCceEEEec-----
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE----- 493 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----- 493 (1101)
|+.++-+..||..+++....... ... ....|.++.... ++. |..++.++.|..+|..+++......
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77775699999987653221000 000 123688888877 665 4445545568899987766543211
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
.....|.++.. +.++ .|..++.++-|..||..+..... +..... .. .......+..+...+++
T Consensus 160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~----------~~---~~l~~~~i~~i~~d~~g 222 (781)
T 3v9f_A 160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKH-FVHDPQ----------NP---NSLPGNDVRCIYKDTNG 222 (781)
T ss_dssp CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEE-ECC---------------------CCSSEEEEEECTTC
T ss_pred CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEe-eecCCC----------Cc---ccCCCCceeEEEEcCCC
Confidence 11245776664 3444 45556666568888876533211 110000 00 00011234455555555
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCC-----CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccc
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 648 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 648 (1101)
.+. .+..+ -+.+||..+++........ -....|.++...++|.+. +|+..+-|.+++..++ .... +....
T Consensus 223 ~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~~-~~~~~ 297 (781)
T 3v9f_A 223 NIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QFLL-PEQIR 297 (781)
T ss_dssp CEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC-----------
T ss_pred CEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-eeee-eeccc
Confidence 544 44444 6899998776543222111 112357888888877654 5666567888887665 2111 10000
Q ss_pred ccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccc
Q 001318 649 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 728 (1101)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 728 (1101)
........... .+.. .....+.... ...+-.|..++.+..++..... +.
T Consensus 298 f~~~~~~~~~~-~l~~-------------------------~~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~----~~ 346 (781)
T 3v9f_A 298 FEFIREGDNNY-SLSN-------------------------ASARYIFQDS-FNNIWIGTWGGGINFISNAPPT----FH 346 (781)
T ss_dssp CEEECBCSSTT-SBSS-------------------------SCEEEEEECS-SCCEEEEEBSSCEEEECSSCCS----CE
T ss_pred cccccCCCCCC-CCCC-------------------------CeEEEEEEeC-CCCEEEEecCCeEEEeCCCCCc----ce
Confidence 00000000000 0000 0000001111 2234445545666666654321 11
Q ss_pred cccc------CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCC
Q 001318 729 SLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 802 (1101)
Q Consensus 729 ~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~ 802 (1101)
.+.. +.......|.++...++|. |..++.++-+..|+.....+. .+. . ...
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~-~---------~~~ 403 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNK-E---------NRE 403 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC---------------
T ss_pred eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------Ecc-C---------CCC
Confidence 1110 1111346789999998887 555565555666765322110 000 0 000
Q ss_pred CCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEec--CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 803 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 803 ~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
.....|.+++..++|.+.+...++.|..+|..+++...... .....|.++...+ ++++.+ |+. +-|..||..+++
T Consensus 404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKK 480 (781)
T ss_dssp CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSS
T ss_pred CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCe
Confidence 13567899999888887664446789999987765432221 1345789998887 666554 555 568889987765
Q ss_pred EeeeecCc-----ccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 881 VKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 881 ~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
........ ...|.++...++|.+.+....+| |..||..+++... .....+ .....|.++...++|.+.+
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEEE
T ss_pred EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEEE
Confidence 43322111 46789999998888766544344 8888887643211 111111 1225688999999999777
Q ss_pred EEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 956 VVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.+.+|-+..||..+++....-...+ ....|.++...++|.+.+++ .+| |..|+..+++.. .+....-++. ..
T Consensus 555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~-~~~~~dGl~~----~~ 627 (781)
T 3v9f_A 555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFY-TYDHSNNIPQ----GS 627 (781)
T ss_dssp EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEE-EECGGGTCCS----SC
T ss_pred EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceE-EecccCCccc----cc
Confidence 7665544889988765432211111 13468899999999876644 455 777888776553 3332222221 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
...-++...+ +|. |..|+.+| +..++...
T Consensus 628 f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 628 FISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp EEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred cccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 2222455555 554 55566677 56667654
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=2.5e-13 Score=166.14 Aligned_cols=240 Identities=13% Similarity=0.064 Sum_probs=162.5
Q ss_pred CCCCeeEEEEecCCCEEEEEe--C----CeEEEEECCCCceeeEecCCCCC--eEEEEEecCCCcEEEEEeccCe-----
Q 001318 804 PEEAVPCFALSKNDSYVMSAS--G----GKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSS----- 870 (1101)
Q Consensus 804 ~~~~i~~~~~s~dg~~la~~s--d----g~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~----- 870 (1101)
|...+..++|||||++||.+. + ..|++||+.+++.+. ..+... ...++|+| |++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 455688999999999999653 2 479999999988651 112122 26899999 8999999888766
Q ss_pred --------EEEEEeecce----EeeeecCcccCeeEEEEcCCCCEEEEEeCCC----ceEEEeCCCcccccceeeecCCC
Q 001318 871 --------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 871 --------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
|++|++.++. ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~- 271 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV- 271 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS-
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC-
Confidence 9999998764 4444455667889999999999998887666 577776554331 1122111
Q ss_pred CCCCCCCCeEEEEcCCCcEEEE-Ee----CCeEEEEEcCCcee--eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 935 RTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 935 ~~~~~~~v~~~~~s~dg~~la~-~~----d~~v~vwd~~~~~~--~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
..+....+ ++|. ++. +. ++.|.+||+.++.. ...+....+...+..++|+ ++.++++...|+..+
T Consensus 272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 13455556 6777 554 43 47899999987753 2233322225568889998 778899999999988
Q ss_pred EEEcC-CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001318 1008 VFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~-s~~---~dg~v~vW~~~~~~ 1068 (1101)
||.+. +++....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 344 l~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88765 455555444 221 11133 567788 556555 333 34789999998877
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=2.1e-12 Score=140.57 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=185.9
Q ss_pred EEcCCCceEEeeec-----CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 745 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 745 ~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
...|+++.+++... ++.+.+.|. .+++.+.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCCE
Confidence 44688888777765 467777665 344433322222 222 3999999998
Q ss_pred EEEEe-----------CCeEEEEECCCCceeeEecCCC-------CCeEEEEEecCCCcEEEEEec--cCeEEEEEeecc
Q 001318 820 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 879 (1101)
Q Consensus 820 la~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~ 879 (1101)
++++. ++.|.+||..+++.+.++.-.. .....++|+| ||++|+++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87764 4679999999999988874221 2466799999 8888887763 689999999999
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC-cccccceeeecCCCCCCCCCCC-eEEEE-cCCCcEEEE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 956 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~-s~dg~~la~ 956 (1101)
+.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++..... ...+. .....+ ....| .++|+++.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 9998885321 1 223433456777888888888888876 4431111 01111 000112 22456 478988788
Q ss_pred EeCCeEEEEEcCCce--eeeecc--------CCCCCCCeeEEEEcCCCCEEEEEEc----------CCeEEEEEcCCcee
Q 001318 957 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1016 (1101)
Q Consensus 957 ~~d~~v~vwd~~~~~--~~~~~~--------~~~h~~~i~~l~~spdg~~l~s~s~----------dg~v~vwd~~~~~~ 1016 (1101)
+.++.|.+.|+.+.. .+..+. ..-....+..++++++++.|+.... ...|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997654 333322 0001234556888999999888753 25799999999999
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEE-ecCCcEEEEeccCCC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~-~~dg~v~vW~~~~~~ 1068 (1101)
+.++. +... .+ .|++++ |++ +|+++ ..++.|.|+|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 2222 33 799999 555 66654 558999999999988
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=3.5e-11 Score=130.37 Aligned_cols=237 Identities=10% Similarity=0.074 Sum_probs=163.9
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+..++++++|..+++...++.|..|+.. +......+. .....+..++++++|+
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~--~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-----------------------GIIKEYTLP--NPDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-----------------------CcEEEEeCC--CcCCCceeeEECCCCC
Confidence 457789999999877776667888888752 111000011 1345688999999998
Q ss_pred EEEEEe-CCeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee-ecCcccCeeEE
Q 001318 819 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 895 (1101)
Q Consensus 819 ~la~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l 895 (1101)
++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 887776 689999998 5554432 233456789999999 7888877767789999998 6665432 33345568899
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeee
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 974 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~ 974 (1101)
++.++|.+.++...++.|.+|+. +++... .... .. ...+..++++++|+.+++. .++.|..||. +++. .
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence 99999998887777888999998 544221 1111 11 1367899999999977665 6789999998 4543 3
Q ss_pred eccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 975 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 975 ~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.+....+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3332344568999999 8888777654 5677778877654
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=2.3e-12 Score=137.52 Aligned_cols=239 Identities=10% Similarity=0.053 Sum_probs=166.3
Q ss_pred CeeEEEEecCCCEEE-EEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 688999999999766 434 68999999866543322223345688999999 787666555 88999999876543222
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEE
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 963 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~ 963 (1101)
.......+.+++++++|+++++...++.|.+|+..+.... . ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~-~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----V-LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----E-CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----e-ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2223356899999999998888777888999976543211 1 11111 1256889999999977764 578999
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEe
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1043 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 1043 (1101)
+||..+........ .+...+.+++++++|.++++...++.|.+||..+..... +. ..+ .-.+.+++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence 99998776544322 223678999999999877777778899999987654432 11 001 0234589999
Q ss_pred CCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1044 PQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1044 ~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+ +++++++...++.|.++++...+
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8 67888999999999999997765
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=6.1e-12 Score=134.15 Aligned_cols=239 Identities=8% Similarity=0.030 Sum_probs=163.1
Q ss_pred CcEEEEEecCCCeEEE-EEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 347 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 347 ~v~~~~~spdg~~lla-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
...+++++|+|+ +++ +.+.++.|.+||..+..... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 788999999998 566 55778999999976654321 112334568899999999966665
Q ss_pred EcCCeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEee
Q 001318 426 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 504 (1101)
Q Consensus 426 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 504 (1101)
. ++.|.+||..+..... +. .....+..++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999988754321 22 2335789999999998 6777777889999986665544333333345667776
Q ss_pred eecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCc
Q 001318 505 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 584 (1101)
Q Consensus 505 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 584 (1101)
+++|.++++...++.|.+||............... ....++++++|..+++...++.
T Consensus 158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred --eCCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence 45667777777788999999875433221111112 3445666666666677677889
Q ss_pred EEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 585 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 585 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
|.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654332 22 122245788999999998888888999999987655
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=3.8e-11 Score=133.30 Aligned_cols=237 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCC-------CCCeEEEEEecCCCcEEEEEec--cC
Q 001318 810 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 869 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 869 (1101)
.++++|||++++++. ++.|.+||..+++.+.++.-. ......++|+| |+++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999999874 467999999998888776432 12345899999 8998888874 57
Q ss_pred eEEEEEeecceEeee-ecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceee-ecCCCCCCCCCCCeEEE
Q 001318 870 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 946 (1101)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.||++.+++. +++....... ....+.. .......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99988877 5432 2 24455655 45667778999999999 6553311100 0011110 0112345
Q ss_pred EcCCCcEE-EEEeCCeEEEEEcCCce--eeeeccCCC--------CCCCeeEEEEcCCCCEEEEEEc----------CCe
Q 001318 947 FHQDQIHF-LVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1005 (1101)
Q Consensus 947 ~s~dg~~l-a~~~d~~v~vwd~~~~~--~~~~~~~~~--------h~~~i~~l~~spdg~~l~s~s~----------dg~ 1005 (1101)
+.+++..+ +++..+.+.+.|+.+.. .+..+.... .......++++||++.|+++.. .+.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 66765544 44677889999987552 222222100 1223455889999998887654 357
Q ss_pred EEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1006 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1006 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
|.++|..+++.+.++. .+. .+..++|+| |++ +++++. .++.|.|||+.+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998886 221 233799999 677 777777 58999999999988
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=1.7e-12 Score=158.68 Aligned_cols=284 Identities=8% Similarity=-0.073 Sum_probs=175.7
Q ss_pred ccCccceeeccCCC---cceeeeccccCC-CccccccccCccccccceEEEEEcCCCceEEee-----ecCceEEeeecc
Q 001318 698 LADVKPRITEESND---KSKVWKLTELSE-PNQCRSLRLPENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWKWQ 768 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~---~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~i~iw~~~ 768 (1101)
.+++..++....++ ...+|....... ...+........+|...+..++|||||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 36777776554433 355676543211 111111100112355678999999999998843 334678888774
Q ss_pred ccccCCCCceeeeecCccccCCCcccc-ccccCCCCCCCCeeEEEEecCCCEEEEEe-CCe-------------EEEEEC
Q 001318 769 RTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK-------------ISLFNM 833 (1101)
Q Consensus 769 ~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~-------------i~vwd~ 833 (1101)
+ |..+ ...+. ......++|+|||+.|+.++ +.. |++|++
T Consensus 156 t----------------------g~~~~~~~~~----~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 156 S----------------------GEWSKVDVIE----GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp T----------------------CCBCSSCCBS----CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred C----------------------CCCcCCcccC----cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 3 3322 11111 11125789999999999887 554 999999
Q ss_pred CCCc----eeeEecCCCCCeEEEEEecCCCcEEEEEeccC----eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE
Q 001318 834 MTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 905 (1101)
Q Consensus 834 ~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~ 905 (1101)
.++. ++.....+...+..+.||| ||++|+.++.++ .|++|+..+++ ...+..+...+....+ ++|.+++
T Consensus 210 ~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~ 286 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYV 286 (695)
T ss_dssp TSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEE
T ss_pred CCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEE
Confidence 8876 2333334556789999999 888888887666 67777655444 4445556666677777 5666444
Q ss_pred EEe---CCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC-CceeeeeccCCC
Q 001318 906 SSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVPRE 980 (1101)
Q Consensus 906 s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~~~~~~~~ 980 (1101)
+.. .++.|.+||+.+++......+ ...+. ...+..++|+ ++.++++ ..|+..++|.+. +++....+.. .
T Consensus 287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~ 360 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKPARASWKEI--VPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL-P 360 (695)
T ss_dssp EECTTCTTCEEEEEBTTBCSGGGCEEE--ECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC-S
T ss_pred EECCCCCCCEEEEEeCCCCCccCCeEE--ecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC-C
Confidence 444 257899999987643211211 11111 1256778888 6666666 578877777554 3554444432 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001318 981 SSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1016 (1101)
Q Consensus 981 h~~~i~~l~~spdg~~l~s~s----~dg~v~vwd~~~~~~ 1016 (1101)
+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 256788899999998776333 357899999998874
No 203
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=2.4e-08 Score=123.80 Aligned_cols=510 Identities=11% Similarity=0.056 Sum_probs=284.8
Q ss_pred CCcEEEEEec--CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~sp--dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..|+++.... +|. +..|+.++.|..+|..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 3688998888 776 44466456788999877653221 0000 0001234689998888887665
Q ss_pred EEEcCCeEEEEEccCCceeeeeeee----ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecC-----
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 494 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 494 (1101)
|+.++-+..||..+++........ .-....|.++...+++. +. .|+.+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IW-IGTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EE-EEeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555656889998876432210000 01135699999988887 33 34444 688999877654322111
Q ss_pred --cccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 495 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 495 --h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+.++..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2345777764 4555 455566645677888765432211000 000000 00000 0111234555556665
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEc-------CCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccc
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 645 (1101)
|+ +-.|..++-|..|+..++....... ..-....|.++...++|.+. +|+.++-|..|+..++ .. ..+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~-~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-VA-IYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-EE-ECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-eE-EEcc
Confidence 55 5667777788999887654332211 00112357788888777654 5666667888886543 11 1000
Q ss_pred cccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCc
Q 001318 646 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 725 (1101)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~ 725 (1101)
. . .
T Consensus 400 ~---~--------------------------------------------------------------------------~ 402 (781)
T 3v9f_A 400 E---N--------------------------------------------------------------------------R 402 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---C--------------------------------------------------------------------------C
Confidence 0 0 0
Q ss_pred cccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCC
Q 001318 726 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~ 805 (1101)
......|.++...++|.. ..++.++.+..++.. ++........ ....
T Consensus 403 ---------~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~----------------------~~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 403 ---------ELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTR----------------------LKKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSS----------------------SCEEEECCST-TTCC
T ss_pred ---------CCCCcceEEEEECCCCCE-EEEeccCCEEEEcCC----------------------CCcEEEeccC-CCCC
Confidence 002356788888888874 445555556666542 2221111000 0134
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCC-----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
..|.++...++|.+.+.. .+.|..||..+++........ ...|.++...+ ++++.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 678899988888755544 477999998876554333222 35689999988 676555 5554457778876655
Q ss_pred EeeeecC---cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 881 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 881 ~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
....... ....|.++...++|.+.++.. +|.|..||..+++. .......+-. ...|.++...++|.+.+++
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEEc
Confidence 3322111 245689999988888766554 66448888876542 1222222221 1467899999999877765
Q ss_pred eCCeEEEEEcCCceeeeeccCCCC-CC--CeeEEEEcCCCCEEEEEEcCCeEEEEEcC
Q 001318 958 HETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1012 (1101)
Q Consensus 958 ~d~~v~vwd~~~~~~~~~~~~~~h-~~--~i~~l~~spdg~~l~s~s~dg~v~vwd~~ 1012 (1101)
. +.|..|+..+.+...--..++- .. ...++...+||++++ |+.+|. ..++..
T Consensus 601 ~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 601 N-TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD 655 (781)
T ss_dssp S-SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred C-CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence 4 4477888877654332111111 11 235677788988766 556774 445644
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=1.1e-11 Score=131.62 Aligned_cols=233 Identities=12% Similarity=0.090 Sum_probs=167.0
Q ss_pred EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCC-CCeEEEEEecCCCeEEEEEcCCeEEEEEccC
Q 001318 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 438 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~ 438 (1101)
+|++++.|+.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 23333 4688999999999998 45788999999 7
Q ss_pred Cceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEEecC-CCcEEEEeCCCCceEEEecC------cccCeEEEeeeecCCc
Q 001318 439 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 510 (1101)
Q Consensus 439 ~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~ 510 (1101)
|+.+.. +..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......++ ...+|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776654 3333 34788999999999 6777666 778888884 8888877641 212233333 35678
Q ss_pred cEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001318 511 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 511 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
+++++...++.|..||.. ++.+.++.... ... .+...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~---------------------~~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPF---------------------SSAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCC---------------------EEEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Ccc---------------------ceeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 77776665432 122 2344566677888888889999999
Q ss_pred CCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCC--------CcEEEEEecCccccccccc
Q 001318 591 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFE 645 (1101)
Q Consensus 591 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~ 645 (1101)
.+|+.+..+.... ....+..++..++|+.+++.... +..+++.+....+.+-.+.
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 9999999986322 12336678888999998887522 2345666643325544443
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=2e-11 Score=135.60 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=142.3
Q ss_pred eeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 808 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
...++|+|||++++++. ++.|.+.|+.+++.+.++.-.. . ....|.+.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 34578889999888875 3689999999999988876422 1 334442446666677788888888765554422
Q ss_pred ----ecCcccCe-eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCC----CCCCCCeEEEEcCCCcEEE
Q 001318 885 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 885 ----l~~h~~~V-~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~la 955 (1101)
+.....++ ..+.|++++..++..+..+.|.+.|+.+................ ........++|+||+++++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22112222 23578999988887788899999998764322111111110000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCC-EEEEEE-cCCeEEEEEcCCceeeeec
Q 001318 956 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 956 ~~~-----------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~-~l~s~s-~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+.. .+.|.++|+.+.+.+..+.. .....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 742 24799999999999998864 23689999999999 888888 5999999999999999887
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.41 E-value=1.3e-11 Score=152.04 Aligned_cols=241 Identities=12% Similarity=0.080 Sum_probs=159.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCe---------
Q 001318 806 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS--------- 870 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~--------- 870 (1101)
..+..++|||||++||.+. +| .|++||+.+++.+.... +...+..++|+| | +.|+.+..++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------C
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccC
Confidence 4678899999999999876 23 59999999988765311 122235789999 7 78887776554
Q ss_pred -----EEEEEeecce----EeeeecCcccCeeEEEEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCC
Q 001318 871 -----IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRT 936 (1101)
Q Consensus 871 -----v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~ 936 (1101)
|++|++.++. ++.....|...+.++.|||||++|+..+.++ .|.+||+.++.......+... .
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---L 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---S
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---C
Confidence 8999987654 3333334444688999999999998877554 799999987521101112111 1
Q ss_pred CCCCCCeEEEEcCCCcEEEE-Ee----CCeEEEEEcCCce-eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEE
Q 001318 937 PTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1010 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~-~~----d~~v~vwd~~~~~-~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd 1010 (1101)
..+... ++|+|+.|+. +. ++.|.+||+.++. ....+.. ++...+..++|+ ++.++++...|+..+||.
T Consensus 317 ---~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 317 ---KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 123344 4589998887 43 3469999998852 3333332 445567788887 677888889999887776
Q ss_pred cC-CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001318 1011 AA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1011 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~-s~~---~dg~v~vW~~~~~~ 1068 (1101)
++ ++.....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 391 ~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVS----LPG---IGSAS--GLSGRP-GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECB----CSS---SCEEE--EEECCB-TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeecc----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 54 455555544 221 11133 688888 455444 333 34789999998877
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=2e-11 Score=150.28 Aligned_cols=282 Identities=11% Similarity=0.043 Sum_probs=172.5
Q ss_pred ccCccceeeccCCC---cceeeecccc----CCCccccccccCccccccceEEEEEcCCCceEEeeecC-----ceEEee
Q 001318 698 LADVKPRITEESND---KSKVWKLTEL----SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLW 765 (1101)
Q Consensus 698 ~~~~~~l~~~~~d~---~i~~w~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~iw 765 (1101)
.+++++++....++ ...+|..... .....+.....-..++...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 36777776554433 3566766532 11111100000012233478899999999998877654 357777
Q ss_pred eccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CC--------------eEEE
Q 001318 766 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISL 830 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg--------------~i~v 830 (1101)
|+. +|..+.... +...+..++|+|| +.|+.++ ++ .|++
T Consensus 195 dl~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 195 GVA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp ETT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred ECC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 663 333322111 1112356899999 9888876 43 3899
Q ss_pred EECCCCce--eeEecC--CCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecc--eEeeeecCcccCeeEEEEcC
Q 001318 831 FNMMTFKT--MATFMP--PPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH 899 (1101)
Q Consensus 831 wd~~~~~~--~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~ 899 (1101)
|++.++.. ...+.. +...+..+.||| ||++|+..+.++ .|++||+.++ ++...+..+...+.... +|
T Consensus 248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 99987652 223332 333588999999 898888877554 8999999877 31455655655555554 48
Q ss_pred CCCEEEEEeCC----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcC-Cceee
Q 001318 900 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV 973 (1101)
Q Consensus 900 dg~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~-~~~~~ 973 (1101)
+|+.|+..+.+ +.|.+||+.++. .. ...+..++. ..+..+.++ ++.++++ ..++..++|.+. ++...
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 99988887764 449999988743 11 112222222 245667777 4555555 577776666443 35555
Q ss_pred eeccCCCCCCCeeEEEEcCCCCEEEEEE----cCCeEEEEEcCCcee
Q 001318 974 KQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1016 (1101)
Q Consensus 974 ~~~~~~~h~~~i~~l~~spdg~~l~s~s----~dg~v~vwd~~~~~~ 1016 (1101)
..+.. .+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55442 2256789999999998666332 357899999999874
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=5.4e-10 Score=121.01 Aligned_cols=278 Identities=9% Similarity=0.054 Sum_probs=187.2
Q ss_pred cccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 737 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
....+.+++++++|+..++...++.|.+|+.. +......+. .....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECC--CCCCcceeEEECCC
Confidence 34577899999999977777677888888753 111111111 13356889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-eecCcccCee
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 893 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~ 893 (1101)
|+++++.. ++.|..||.. ++... .+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 99777766 6889999987 55432 2232346789999999 88888777668899999987 55442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee
Q 001318 894 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 972 (1101)
Q Consensus 894 ~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~ 972 (1101)
++++.++|++.++...++.|..|+. +++... .... ... ..+..++++++|..+++. ..+.|.+||. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999998 433221 1111 111 357899999999877775 4568999998 4544
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.... ...+...+.+++++++|++.++...++.|.+||. +++.. .+. .+.+ . ..+.++++.+ +|++.++
T Consensus 221 ~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 3322 2234567899999999997776666789999998 45443 222 1111 1 1233788888 5665555
Q ss_pred EecCCcEEEEecc
Q 001318 1053 GLSDGGVHVFEPL 1065 (1101)
Q Consensus 1053 ~~~dg~v~vW~~~ 1065 (1101)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 54 4 67776653
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=3.4e-10 Score=123.61 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=162.1
Q ss_pred cCCCCcEEEEEecCCCeEEEE-------EecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 415 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llat-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 415 (1101)
..-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.++++
T Consensus 15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEE
T ss_pred ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEE
Confidence 3445678999999998 5666 56789999999888765321 0 0 001234567999999
Q ss_pred ecC-CCeEEEEEcCCeEEEEEccCCceeee-eeeecc-ccCCeeEEEEcCCCCeEEEEEecCC---------------Cc
Q 001318 416 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT 477 (1101)
Q Consensus 416 spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d---------------~~ 477 (1101)
+++ |+++++. ..+.|.+||.+ ++.... .....+ ....+.+++++++|+ ++++...+ +.
T Consensus 79 ~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 79 DRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp CSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence 999 6655544 44579999998 653321 100111 224589999999998 56665544 56
Q ss_pred EEEEeCCCCceEEEecCcccCeEEEeee--ecCCccEEE-EEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCce
Q 001318 478 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 554 (1101)
Q Consensus 478 i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 554 (1101)
|..||.. ++..... .+......++++ .+++++.++ +...++.|.+||.......... ..+.-.+
T Consensus 155 l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~---- 221 (314)
T 1pjx_A 155 IYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIP---- 221 (314)
T ss_dssp EEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECC----
T ss_pred EEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECC----
Confidence 7778765 5544332 234456777774 115665554 4456789999987621111000 0000000
Q ss_pred EEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEE-eCCCcEEEEE
Q 001318 555 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA 633 (1101)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~ 633 (1101)
++.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|+
T Consensus 222 ---~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 222 ---GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ---CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ---CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 0000134456777787777777788999999998787777766442 357899999999955554 4568899998
Q ss_pred ecCc
Q 001318 634 TSDG 637 (1101)
Q Consensus 634 ~~~~ 637 (1101)
+...
T Consensus 297 ~~~~ 300 (314)
T 1pjx_A 297 WQRN 300 (314)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=1.2e-10 Score=127.31 Aligned_cols=245 Identities=8% Similarity=0.024 Sum_probs=162.1
Q ss_pred cceEEEEEcCCCceEEe-------eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccC-CCCCCCCeeE
Q 001318 739 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 810 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~-~~~~~~~i~~ 810 (1101)
....+++|+++|..+++ ...++.|.+|+...+ ........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEEEEEecccCCCCCCCce
Confidence 34578999999987777 567788888875322 11110000 0013356889
Q ss_pred EEEecC-CCEEEEEeCCeEEEEECCCCceeeE-ecC----CCCCeEEEEEecCCCcEEEEEecc---------------C
Q 001318 811 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 869 (1101)
Q Consensus 811 ~~~s~d-g~~la~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g 869 (1101)
++++++ |+++++..++.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776665556689999988 665433 221 123588999999 78877766554 5
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEc----CCCCEEEEE-eCCCceEEEeCC-CcccccceeeecCCCCCCCCCCCe
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLVSS-GADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s~-s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
.|..||.. ++... +..+......++|+ +||+.|..+ ..++.|.+|+++ ++............++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777755 54333 22344456889999 999765544 567889999986 33322112222222221 02467
Q ss_pred EEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEE-EEEcCCeEEEEEcCC
Q 001318 944 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1013 (1101)
Q Consensus 944 ~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~-s~s~dg~v~vwd~~~ 1013 (1101)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|+|||+.|+ +...++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 67899999998777666554 3357899999999999555 444567899999864
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=2.9e-09 Score=115.16 Aligned_cols=240 Identities=12% Similarity=0.032 Sum_probs=162.3
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
....+.++++.++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456789999999998 56666678999999987 54332 1 1223346799999999999888
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE-EecCcccCeEEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 502 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v 502 (1101)
+...++.|..||.. ++.. . ..+......+.++++.+++. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999988 5432 1 12333446799999999998 67777778899999987 66543 233344567777
Q ss_pred eeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCC
Q 001318 503 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 582 (1101)
Q Consensus 503 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 582 (1101)
++ ++++.+.++...++.|..||. +++.. .+.... .......++++++++..++....
T Consensus 152 ~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~-------------------~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 152 TL--GSDNALWFTENQNNSIGRITN-TGKLE-EYPLPT-------------------NAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp EE--CTTSSEEEEETTTTEEEEECT-TCCEE-EEECSS-------------------TTCCEEEEEECTTSSEEEEETTT
T ss_pred EE--CCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCC-------------------CCCCcceEEECCCCCEEEEccCC
Confidence 76 456676666666788998987 32221 111100 01134455666666666666667
Q ss_pred CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 583 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 583 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
+.|.+|+. +++.... ........+.+++++++|++.++...++.|..|+.
T Consensus 209 ~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 78999998 5554332 22223345788999999997776666788888876
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.35 E-value=1e-10 Score=130.04 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=160.9
Q ss_pred EEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeEecCC-------CCCeEEEEEecCCCcEEEEEec--cC
Q 001318 810 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 869 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg 869 (1101)
.++++|||++++++. ++.|.++|..+++.+.++.-. ......++|+| |+++|+++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 899999999888774 467999999999998887521 13456789999 8888888764 57
Q ss_pred eEEEEEeecceEeeeecCcccCeeEEEEcCCC-CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEc
Q 001318 870 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 948 (1101)
Q Consensus 870 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 948 (1101)
.|.+.|+.+++.+.++.--.. ....|++ +.+++.+.||++.+.+..+++...... ....-... .....+.|+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~--p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE--LLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS--CBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC--ceeeEeeec
Confidence 999999999998888763211 2233332 455566667777777764433221100 01100000 011345789
Q ss_pred CCCcEEEE-EeCCeEEEEEcCCceee--eeccCCC--------CCCCeeEEEEcCCCCEEEEEEc----------CCeEE
Q 001318 949 QDQIHFLV-VHETQLAIFETTKLECV--KQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DATVC 1007 (1101)
Q Consensus 949 ~dg~~la~-~~d~~v~vwd~~~~~~~--~~~~~~~--------h~~~i~~l~~spdg~~l~s~s~----------dg~v~ 1007 (1101)
+++..++. ...+.+.+.|..+.... ..+.... .......++|+||++.|++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887766 56788999998655421 2111100 0122234799999998777653 35799
Q ss_pred EEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001318 1008 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1068 (1101)
Q Consensus 1008 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~~~~ 1068 (1101)
|+|..+++.+.++. .+. .+..+.|+| |++ ++++.. .++.|.|+|+.+++
T Consensus 354 VID~~T~kvv~~I~----vg~-------~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 354 VLNAETGERINKIE----LGH-------EIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEETTTCCEEEEEE----EEE-------EECEEEECC-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCeEEEEEE----CCC-------CcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCC
Confidence 99999999999887 221 244799999 677 777777 59999999999988
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=4.7e-10 Score=126.45 Aligned_cols=250 Identities=8% Similarity=-0.009 Sum_probs=163.6
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEe
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 882 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~ 882 (1101)
.....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|++++.++ .|++|+...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578999999999666666 68999999988766555443 22334 99999 888888888766 7888887765433
Q ss_pred eee----cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCe-EEEEcCC-CcEEEE
Q 001318 883 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV 956 (1101)
Q Consensus 883 ~~l----~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d-g~~la~ 956 (1101)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+... .... .++|+|+ +.++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566789999995555555777889999999876421110000 111111 1113 9999996 554444
Q ss_pred -EeCCeEEEEEcCCceeeeeccCC----C---------CCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 957 -VHETQLAIFETTKLECVKQWVPR----E---------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 -~~d~~v~vwd~~~~~~~~~~~~~----~---------h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..++.|+.|+.... +..+... + .-.....++|+|+|+++++-+ .++.|+.|++.+|+......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 36788999997654 2222110 0 023588999999999888777 78999999988887543322
Q ss_pred CCcc-c-CCCC--CCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 1022 PSAY-L-PAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 1022 ~~~~-~-~~~~--~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
.... . ..+. ...--.|..+++++ ++.++++-..++.|+.+.+
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 1000 0 0000 00113467899999 4788888888888888776
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=4.9e-10 Score=121.53 Aligned_cols=237 Identities=12% Similarity=0.061 Sum_probs=155.9
Q ss_pred ecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 340 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 340 ~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
.+..+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence 344456678899999999988899988999999998 444211 23345678999999999
Q ss_pred CeEEEEEcCCeEEEEEccCCceeeeeeeeccc-cCCeeEEEEcCCCCeEEEEE----ecC-------------CCcEEEE
Q 001318 420 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 481 (1101)
Q Consensus 420 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~~~~s~d~~~~~l~s----~~~-------------d~~i~iw 481 (1101)
+++++...++.|.+|+.+ ++.........+. ...++++++.++|+ +++| |.. .+.|..|
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 977766667889999986 4422211111121 23578899999998 6665 332 2568888
Q ss_pred eCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC------CcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
|..+++..... .....+.++| +++++.|+.+... +.|..|++.... .... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87777755433 4445677887 4566767666654 689999887533 1100 00
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCc
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 628 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 628 (1101)
+..........++++++|++ .++..+ .|.+|+. .++.+..+.... .+.+++|+++++.|.+++.++.
T Consensus 233 ~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred EEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 00000112234667777774 444444 5999998 577777776543 3788999999998888887543
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=6.7e-11 Score=130.68 Aligned_cols=273 Identities=8% Similarity=-0.023 Sum_probs=176.3
Q ss_pred cceEEEEEcCCCceEEeeec--CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecC
Q 001318 739 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 816 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~d 816 (1101)
.....++++++|+.+++... ++.++||.+.. ++...-. -|. .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~----------~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQS----------GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCC----------SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Ccc----------cCcccceeEeeEEEEcCC
Confidence 46789999999998777542 34366776531 1111000 000 001125567999999999
Q ss_pred CCEEEEEe------CCeEEEEECCCCceeeEecCC------CCCeEEEEEecCCCcEEEEEe---ccCeEEEEEeecceE
Q 001318 817 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 881 (1101)
Q Consensus 817 g~~la~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~ 881 (1101)
++++++-. ++.|.+||+.+++.++++... ......++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98666543 378999999998877766432 235689999984455556555 688999999998887
Q ss_pred eeeecCcccCee-EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 882 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 882 ~~~l~~h~~~V~-~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
...+.+|..... ...++.+|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777766533211 1456668888888888888776642 23679999999988875 33
Q ss_pred -CeEEEEEcCC---c-----eeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCC
Q 001318 960 -TQLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 960 -~~v~vwd~~~---~-----~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
..+..++... + +....+...++......++++++|.++++...++.|.+||..+|+...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3555554321 1 000001101223456789999999999998899999999986676543322 111
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCCcEEEE
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1062 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW 1062 (1101)
..++.+++|.+ +++++++.+..+.+.+|
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ---eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 13456899998 57787777755544333
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=6.7e-10 Score=119.87 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=149.2
Q ss_pred ceEEEEEcCCCc-eEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 740 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 740 ~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
-..+..|++++. .+++...++.|..|+... +...... ....+.+++++++|+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG 66 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence 445788888654 445555578888887632 2211110 345688999999999
Q ss_pred EEEEEeCCeEEEEECCCCceeeEecC----CCCCeEEEEEecCCCcEEEEEecc---------CeEEEEEeec-ceEeee
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRV-DEVKSK 884 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~-~~~~~~ 884 (1101)
+++ +.++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.||.+.. ++. ..
T Consensus 67 l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~ 143 (297)
T 3g4e_A 67 YVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KK 143 (297)
T ss_dssp EEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EE
T ss_pred EEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-EE
Confidence 544 4577899999987765433221 123478899999 88877654322 2345555543 333 22
Q ss_pred ecCcccCeeEEEEcCCCCEEE-EEeCCCceEEEeC--CCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC
Q 001318 885 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 960 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~-s~s~D~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 960 (1101)
+..+....+.++|+||++.|+ +.+.++.|.+|++ .++............... ..+..++++++|++.++. ..+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCC
Confidence 333444568999999998764 5556788999987 444432222222221111 256789999999877774 567
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEc
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1002 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~ 1002 (1101)
.|..||..+++.+..+.. +...+++++|+ ||++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 899999999998887763 35689999998 89887766654
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=2e-09 Score=121.37 Aligned_cols=255 Identities=11% Similarity=0.033 Sum_probs=165.6
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 425 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 425 (1101)
.....++|+|+|+ |+++...++.|++||..+++.... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 688888889999999988765431 112 22233 9999999999998
Q ss_pred EcCC--eEEEEEccCCceeeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEE----ecCcccC
Q 001318 426 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 498 (1101)
Q Consensus 426 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 498 (1101)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 899999887654332212222 4567889999996553 33366688999999887764332 2222222
Q ss_pred e--EEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 499 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 499 v--~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
- ..++|++. ++.++++-..++.|+.|+.+.. ...+....... . ..+| ......-.....++++++|+++
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27887542 3566777777889999987643 22111111000 0 0000 0000001235668888888877
Q ss_pred EEEe-CCCcEEEEECCCCceeEEEcCCC-------------CCCCcCeEEEccCCCEEEEEeCCCcEEEEEe
Q 001318 577 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 634 (1101)
Q Consensus 577 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 634 (1101)
++-. .++.|+.|++.++...... +.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~~~-g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEEEE-ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEEEe-CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 7899999998777644333 220 1234678999999988888888889988765
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=1.2e-10 Score=127.57 Aligned_cols=172 Identities=12% Similarity=0.118 Sum_probs=134.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCc-----------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
.+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 6889999999999999997788889976443 11222 2455 999999 57888888 889999999
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEE
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 955 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 955 (1101)
+.+.........|..+|.++.+.+.. +++++.||.|.+||+..+.... .. ..|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eEE
Confidence 98766555666778889888877543 8889999999999999765321 11 378999999999 444
Q ss_pred EEeCCeEEEEEcCCcee--eeeccC----C---CCCCCeeEEEEcCCCCEEEE
Q 001318 956 VVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 956 ~~~d~~v~vwd~~~~~~--~~~~~~----~---~h~~~i~~l~~spdg~~l~s 999 (1101)
...||.+++|+...+.+ .+.+.. . +|...|.++.|.+++.+|++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 47999999999988775 444421 1 46789999999999999886
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=1.8e-09 Score=116.41 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=152.6
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
..-..+..|+|++..|+++...++.|..||..+++... + .....+.+++++++|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999877788888889999999998875422 1 12457999999999996554
Q ss_pred EEcCCeEEEEEccCCceeeeeeeecc--ccCCeeEEEEcCCCCeEEEEEecC---------CCcEEEEeCCC-CceEEEe
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATN-GAKQYIF 492 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~V~~~~~s~d~~~~~l~s~~~---------d~~i~iwd~~~-~~~~~~~ 492 (1101)
. ++.|.+||.++++.. .+..... ....++.++++|+|+ ++++... .....||.+.. ++.. .+
T Consensus 71 -~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KY 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EE
T ss_pred -E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EE
Confidence 3 567999999887643 2222211 124588999999998 4554321 12345555443 4333 33
Q ss_pred cCcccCeEEEeeeecCCccEE-EEEecCCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 493 EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 493 ~~h~~~v~~v~~~~~~~~~~l-~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
..+....+.++|+ ++++.+ ++.+.++.|..|+++.. ...... .+... + .........++++
T Consensus 145 ~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~------~-~~~~~~p~g~~~d 207 (297)
T 3g4e_A 145 FDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK------L-EKEEQIPDGMCID 207 (297)
T ss_dssp EEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE------C-CGGGCEEEEEEEB
T ss_pred eeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE------C-CCCCCCCCeeEEC
Confidence 3344456778885 455555 55566789999987421 111000 00000 0 0011234567778
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeC
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 625 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 625 (1101)
++|++.++....+.|.+||..+++.+..+.... ..+++++|. |+++.|++.+.
T Consensus 208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 888777777778889999999999988887553 358899998 88887777664
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.23 E-value=1.8e-10 Score=125.92 Aligned_cols=273 Identities=8% Similarity=-0.051 Sum_probs=170.4
Q ss_pred ceeeccCCC----cceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeee----------cCceEEeeecc
Q 001318 703 PRITEESND----KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA----------SNAIHLLWKWQ 768 (1101)
Q Consensus 703 ~l~~~~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~----------~dg~i~iw~~~ 768 (1101)
..++...++ ++.+.|..+.+....... ...+ .+.|+||++.++++. .++.|.+||..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLG-------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeC-------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 344444444 566888776443332221 1223 799999999998886 35778888763
Q ss_pred ccccCCCCceeeeecCccccCCCccccccccCC-CC---CCCCeeEEEEecCCCEEEEEe---CCeEEE--EECCCCcee
Q 001318 769 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTD-SN---PEEAVPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTM 839 (1101)
Q Consensus 769 ~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~-~~---~~~~i~~~~~s~dg~~la~~s---dg~i~v--wd~~~~~~~ 839 (1101)
+++.+.....+ .. .......++++|||++++++. ++.|.+ +|..+ +
T Consensus 105 ----------------------T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v 159 (368)
T 1mda_H 105 ----------------------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---D 159 (368)
T ss_dssp ----------------------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---E
T ss_pred ----------------------CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---c
Confidence 33322211100 00 013456799999999999886 356888 99887 4
Q ss_pred eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec-----ceEeee----ecCcccCeeEEEEcCCCCEEEEEeCC
Q 001318 840 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSK----LKGHSKRITGLAFSHALNVLVSSGAD 910 (1101)
Q Consensus 840 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~D 910 (1101)
.++..... ..+.|++.+.+++.+.||.+.+.|+.+ ++.... +.-...+. + ++++..++..+.
T Consensus 160 ~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~- 230 (368)
T 1mda_H 160 QLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA- 230 (368)
T ss_dssp EEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-
T ss_pred eEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-
Confidence 45532111 223453455666677889988889886 554321 11112333 3 666666666666
Q ss_pred CceEEEeCCCcccccceeeecCCC----CCCCCCCCeEEEEcCCCcEEEEE-e-C--------CeEEEEEcCCceeeeec
Q 001318 911 SQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLVV-H-E--------TQLAIFETTKLECVKQW 976 (1101)
Q Consensus 911 ~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~la~~-~-d--------~~v~vwd~~~~~~~~~~ 976 (1101)
+.|.+.|+.+........+..... ....+.....++|+|||+.+.++ . . +.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 899999987533211111111100 00000122337899999988874 3 2 36779999999999888
Q ss_pred cCCCCCCCeeEEEEcCCCCE-EEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 977 VPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 977 ~~~~h~~~i~~l~~spdg~~-l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
... .....++|+|||++ +++.. .++.|.|+|+.+++.+.++.
T Consensus 311 ~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 311 SNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred ECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 652 36899999999985 55555 48999999999999999887
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.23 E-value=1.3e-05 Score=94.68 Aligned_cols=532 Identities=10% Similarity=-0.021 Sum_probs=269.4
Q ss_pred eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcCCeEEEEEcc
Q 001318 359 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH 437 (1101)
Q Consensus 359 ~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~ 437 (1101)
+|+++ ..+.|+..++++...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34554 447899999886543221 111223468899999976666655 457889999987
Q ss_pred CCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEE-
Q 001318 438 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST- 516 (1101)
Q Consensus 438 ~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~- 516 (1101)
...... .+.........+++.+.++. ++++-...+.|.+.++........+.........+++.+. +|.++++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 653222 12222245778999877775 4566667788999997654432223233445667777542 33344433
Q ss_pred ecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCce
Q 001318 517 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQL 595 (1101)
Q Consensus 517 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~ 595 (1101)
+..+.|...+++........ ..... ...++++++++.|+.+. ..+.|...+++....
T Consensus 143 g~~~~I~r~~~dG~~~~~l~-~~~~~---------------------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLV-PNVGR---------------------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEE-CSCSS---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCEEEEEeCCCCceEEEE-CCCCC---------------------cceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 22456666666543322211 12222 33455555544555554 567888888865443
Q ss_pred eEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhcc
Q 001318 596 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 675 (1101)
Q Consensus 596 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1101)
..+... ......+++.. +..+++-...+.|...|..++.. ...+........ .+....
T Consensus 201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p~--------~i~v~~--------- 258 (628)
T 4a0p_A 201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYVM--------DILVFH--------- 258 (628)
T ss_dssp -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSCC--------EEEEEC---------
T ss_pred -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCcc--------eeeeee---------
Confidence 233211 22345677764 44455555578888888777632 222221110000 000000
Q ss_pred cccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEe
Q 001318 676 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILA 755 (1101)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 755 (1101)
.. .++ ..+........... +.+-.... ...|.--. .........++. .+ ...|+.
T Consensus 259 -~~---~q~-----~~n~C~~~ng~C~~---------~C~~~~~~---~~~C~C~~-g~~l~~d~~~C~--~~-~~~Ll~ 313 (628)
T 4a0p_A 259 -SS---RQS-----GWNECASSNGHCSH---------LCLAVPVG---GFVCGCPA-HYSLNADNRTCS--AP-TTFLLF 313 (628)
T ss_dssp -GG---GSC-----CCCTTTTTGGGCSS---------EEEEETTT---EEEEECST-TCEECTTSSCEE--CC-SSEEEE
T ss_pred -ec---ccc-----cceEeccCCCCcch---------hhhcCCCC---CeeEEcCC-CcEecccCCcCc--cc-cceeee
Confidence 00 000 00000000000000 11100000 00000000 000000011111 11 122222
Q ss_pred eecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEC
Q 001318 756 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM 833 (1101)
Q Consensus 756 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~ 833 (1101)
+. ...|+-..+.. ........... .-..+.+++|.+.+..|+.+. .+.|+.++.
T Consensus 314 s~-~~~i~~i~l~~--------------------~~~~~~~l~~~---~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~ 369 (628)
T 4a0p_A 314 SQ-KSAINRMVIDE--------------------QQSPDIILPIH---SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369 (628)
T ss_dssp EE-TTEEEEECCCT--------------------TCCCCEECCCT---TCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ec-cceEEEEeccc--------------------ccCceEEEEeh---hcCCceEEEEecCCCeEEEEecCcceEEEEEc
Confidence 22 22333222210 00000000011 234578899999888888876 578999987
Q ss_pred CCCceeeEecC------CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcC-CCCEEE
Q 001318 834 MTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSH-ALNVLV 905 (1101)
Q Consensus 834 ~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~l~ 905 (1101)
........+.. ....+..+++....+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.
T Consensus 370 ~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~ 448 (628)
T 4a0p_A 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYF 448 (628)
T ss_dssp TSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred CCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEE
Confidence 64333333332 234688999998445555666677899999875 4444443 33345678999999 455444
Q ss_pred EEeCCC--ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCC
Q 001318 906 SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 906 s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
+-.... .|...+++.... ..+.. ... .....+++++++..|..+ ..+.|..+++.... .+.+.. ..
T Consensus 449 tD~g~~~~~I~r~~~dG~~~--~~l~~---~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~-~~ 518 (628)
T 4a0p_A 449 TNLQERSPKIERAALDGTER--EVLFF---SGL---SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED-SN 518 (628)
T ss_dssp EEEETTEEEEEEEETTSCSC--EEEEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SS
T ss_pred eecCCCCCeEEEEeCCCCCc--EEEEe---ccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc-CC
Confidence 433222 455556665321 11111 111 245889999987777764 45789999986543 333321 22
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
.....+|++.. +.++++-...+.|...|..+|+....+
T Consensus 519 ~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i 556 (628)
T 4a0p_A 519 ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV 556 (628)
T ss_dssp CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence 34567888754 455555556678888888877654443
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=2.6e-09 Score=128.54 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=136.0
Q ss_pred EEEEEecCCCcEEEEEeccC-------------------eEEEEEeecceEeeeecC--cc-------cCeeEEEEcCCC
Q 001318 850 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 901 (1101)
Q Consensus 850 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg 901 (1101)
..++++| ++.+|+++..++ .|..+|..+|+.+-.++. |. ....-+....||
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 3578999 677888777664 599999999998876543 21 112223334477
Q ss_pred ---CEEEEEeCCCceEEEeCCCcccccceeeecC--------CCC--------------------CCCCCCCeEEEEcCC
Q 001318 902 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR--------------------TPTAQSDTRVQFHQD 950 (1101)
Q Consensus 902 ---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~--------------------~~~~~~v~~~~~s~d 950 (1101)
..|+.++.+|.|.++|..+|+.......... .+. .. ...-..++|+|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G-~~~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG-AHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC-SSCSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccc-ccCCCCceEcCC
Confidence 6899999999999999999876432211100 000 00 000125789999
Q ss_pred CcEEEEE-eC-------------------------------------------CeEEEEEcCCceeeeeccCCCCCCCee
Q 001318 951 QIHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPIT 986 (1101)
Q Consensus 951 g~~la~~-~d-------------------------------------------~~v~vwd~~~~~~~~~~~~~~h~~~i~ 986 (1101)
+.++++. .+ +.|..||+.+++.+-.+.. ..++.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~ 480 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWN 480 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCc
Confidence 8888773 31 6799999999998776642 33455
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEec----------
Q 001318 987 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS---------- 1055 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~~---------- 1055 (1101)
...++.++.+++.++.||.+++||..+|+.+.++. .+.+ +...-+.|.. +|+ ++++.+.
T Consensus 481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~ 550 (677)
T 1kb0_A 481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAAR 550 (677)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCC
T ss_pred CcceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCcccccccc
Confidence 66677788899999999999999999999999887 3333 2222456665 455 4444333
Q ss_pred ------CCcEEEEeccC
Q 001318 1056 ------DGGVHVFEPLE 1066 (1101)
Q Consensus 1056 ------dg~v~vW~~~~ 1066 (1101)
.+.+.+|.+..
T Consensus 551 ~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 551 ATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCSCCCCCEEEEEEETC
T ss_pred ccccCCCCeEEEEeccc
Confidence 36888888864
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.20 E-value=1.1e-09 Score=121.02 Aligned_cols=250 Identities=13% Similarity=0.051 Sum_probs=148.4
Q ss_pred CCcEEEEEecCCCeEEEEEe--cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
..+..++++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+.+++|+++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6789999999998 466653 2343666666544322 222111 01235667899999999998777
Q ss_pred EEEc-----CCeEEEEEccCCceeeeeeeec----cccCCeeEEEEcCCCCeEEEEEec---CCCcEEEEeCCCCceEEE
Q 001318 424 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 491 (1101)
Q Consensus 424 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 491 (1101)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999998755432 221 23345789999987654 456655 678999999999988777
Q ss_pred ecCcccCeE-EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEecc-----------
Q 001318 492 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF----------- 559 (1101)
Q Consensus 492 ~~~h~~~v~-~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~----------- 559 (1101)
+.+|..... ...+ ..+|..+.+.+.++.++.|.. .+..++++|+|+.++...
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 755421100 0011 111222333333333332210 122233333332221110
Q ss_pred ---------------------ccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 560 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 560 ---------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
.......++++++|+.+++...++.|.+||..+++...... ........+++|.++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSC
T ss_pred HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCc
Confidence 00123347888888888888889999999986666443333 21233467899999988
Q ss_pred EEEEEeCCCc
Q 001318 619 LLAVSTNDNG 628 (1101)
Q Consensus 619 ~l~~~~~dg~ 628 (1101)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777665433
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=6e-09 Score=113.96 Aligned_cols=225 Identities=11% Similarity=-0.041 Sum_probs=145.5
Q ss_pred eEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCE
Q 001318 741 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 819 (1101)
Q Consensus 741 i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~ 819 (1101)
..+.+|++++.. +++...++.|..|+... +...... ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence 457789997554 45555578888887532 2211110 2346889999999987
Q ss_pred EEEEeCCeEEEEECCCCceeeEecC---C-CCCeEEEEEecCCCcEEEEEec------cCeEEEEEeecceEeeeecCcc
Q 001318 820 VMSASGGKISLFNMMTFKTMATFMP---P-PPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 889 (1101)
Q Consensus 820 la~~sdg~i~vwd~~~~~~~~~~~~---~-~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~ 889 (1101)
+++. ++.|.+||..+++....... . ...+..++++| +|+++++... .+.|+.++ +++... +..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC
Confidence 7765 55699999988775433221 1 23588999999 7877665432 24555555 555433 33334
Q ss_pred cCeeEEEEcCCCCEEEEE-eCCCceEEEeCC--Cc-ccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEE
Q 001318 890 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 964 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~v 964 (1101)
.....++|+|||+.|+.+ +.++.|.+|+++ ++ ............... ..+..++++++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 457899999999877554 557889999986 54 322212222221111 245789999999877774 5689999
Q ss_pred EEcCCceeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEcC
Q 001318 965 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1003 (1101)
Q Consensus 965 wd~~~~~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~d 1003 (1101)
||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence 998 566666654 234579999998 898877655543
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.19 E-value=1.4e-09 Score=132.40 Aligned_cols=245 Identities=14% Similarity=0.116 Sum_probs=154.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecC----CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 419 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 419 (1101)
|...+..++|||||++|+.+.+.. ..|+|||+.+++.+.. . +. ......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence 456788999999999865555443 4799999999986542 1 11 0113568999 99
Q ss_pred CeEEEEEcCC-------------eEEEEEccCCcee-eeeeeecc-ccCCeeEEEEcCCCCeEEEEEec---CCCcEEEE
Q 001318 420 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 481 (1101)
Q Consensus 420 ~~las~~~d~-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~---~d~~i~iw 481 (1101)
+.|+.++.+. .|++|++.++..- ........ |...+..+.|+|||+.+ +++.+ .+..|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 3999999876531 12223334 55567899999999963 33333 23589999
Q ss_pred eCCCCc-eEEEecCcccCeEEEeeeecCCccEEEEEecC---CcEEEEecCCCCc--eeeecCCCCceeEEEEccCCceE
Q 001318 482 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 482 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
|+.++. ....+..+....... +.+.+ +.+++....+ +.|..||+.+... ...+..+...
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------------- 329 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ------------- 329 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-------------
T ss_pred ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-------------
Confidence 998774 445566566655544 33333 2455555443 5788888876543 1222222221
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCC----Cc
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG 628 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 628 (1101)
.+ .++++++.|+.... ++ .|++|++..+ ....+.... ...+..+.++++++.++....+ ++
T Consensus 330 -------~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 330 -------VL---TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -------CE---EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -------EE---EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 11 55566666766554 43 6899998754 445554322 2235566777888777666544 78
Q ss_pred EEEEEecCc
Q 001318 629 IKILATSDG 637 (1101)
Q Consensus 629 i~iw~~~~~ 637 (1101)
+..||+.++
T Consensus 398 l~~~d~~~g 406 (693)
T 3iuj_A 398 LYRFEPKSG 406 (693)
T ss_dssp EEEECTTTC
T ss_pred EEEEECCCC
Confidence 999998766
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=9.2e-09 Score=112.46 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=146.7
Q ss_pred CcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE
Q 001318 347 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 426 (1101)
Q Consensus 347 ~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 426 (1101)
-..+.+|+|++..+++++..++.|.+||..+++... +. +...|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 356789999987788888889999999998875432 11 13579999999999987764
Q ss_pred cCCeEEEEEccCCceeeeeeeec-c-ccCCeeEEEEcCCCCeEEEEEecC------CCcEEEEeCCCCceEEEecCcccC
Q 001318 427 SRHIVQIYSYHGGDEVRQHLEID-A-HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 427 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~V~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
. ..|.+||..+++... ..... + ....+++++++++|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~-~gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 D-DGLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp T-TEEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred C-CCEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 4 449999998876432 21211 1 124689999999998 4544432 23455555 55543 33233345
Q ss_pred eEEEeeeecCCccEEE-EEecCCcEEEEecC--CC-Cce--eeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCC
Q 001318 499 VYSVCPHHKENIQFIF-STALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 572 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~-s~~~dg~i~~wd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 572 (1101)
...++|+ ++++.++ +.+.++.|.+||++ ++ ... ..+. .+.. .......++++++
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~ 240 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE 240 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence 6778874 5556554 44557899999986 32 110 0000 0000 0113345677777
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCC
Q 001318 573 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 626 (1101)
Q Consensus 573 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 626 (1101)
|++.++...++.|.+|+. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 777777667789999998 677777776443 358899998 888877666543
No 227
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=3.7e-10 Score=123.55 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=134.3
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccc--cC-CCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTE--RN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 815 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~-~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~ 815 (1101)
..+..+++++....+++++.+ .+.+|++.... .. ..+. .+.. .. . .+.. |+.++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~-----------~~~~--~~--~---~lp~-V~~l~f-- 95 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTP-----------LTFK--WE--K---EIPD-VIFVCF-- 95 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCC-----------CCCS--EE--E---ECTT-EEEEEE--
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccccc-----------ccce--EE--e---eCCC-eeEEEE--
Confidence 368899999999988888887 45559875432 00 0000 0000 00 0 1445 999999
Q ss_pred CCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEE
Q 001318 816 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 895 (1101)
Q Consensus 816 dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l 895 (1101)
|+++|+++.++.|++||+.+.........+...+..+.+.+ . -+|+++.||.|.+||+.++.... +...|+++
T Consensus 96 d~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v 168 (388)
T 1xip_A 96 HGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF 168 (388)
T ss_dssp ETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred CCCEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence 99999999889999999988776666667777888888776 3 28889999999999999876543 45689999
Q ss_pred EEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecC---CCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 896 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP---TGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
+|||+| ++.|..||++++|+.++++......+..+ ..+......|.++.|.+++.++++
T Consensus 169 ~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 169 DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999 77899999999999887653111112111 110111257999999999999998
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=2.9e-09 Score=128.08 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=59.4
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc-cCeeEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l 904 (1101)
|.|..||+.+++.+.++.. ...+....++. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998887763 33344455666 66788889999999999999999998886433 333456777888755
Q ss_pred EEE
Q 001318 905 VSS 907 (1101)
Q Consensus 905 ~s~ 907 (1101)
+..
T Consensus 535 v~~ 537 (677)
T 1kb0_A 535 VSV 537 (677)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=2.9e-09 Score=128.33 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=125.6
Q ss_pred EEEEecCCCcEEEEEeccCe-------------------EEEEEeecceEeeeecC--cc-------cCeeEEEEcCCCC
Q 001318 851 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 902 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 902 (1101)
.++++| +..+|+++..++. |..||..+|+.+-.++. |. .++.-.....+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578999 7778888887764 99999999998876653 21 1122222223665
Q ss_pred ---EEEEEeCCCceEEEeCCCcccccceeeec------------------------CCCCC----C---CCCCCeEEEEc
Q 001318 903 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGRT----P---TAQSDTRVQFH 948 (1101)
Q Consensus 903 ---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~~----~---~~~~v~~~~~s 948 (1101)
.|+.++.+|.+.++|..+|+......... ..+.. + ....-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999987642111000 00000 0 00011247899
Q ss_pred CCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceeeeeccCCCCC
Q 001318 949 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS 982 (1101)
Q Consensus 949 ~dg~~la~~-~---------------------------------------------d~~v~vwd~~~~~~~~~~~~~~h~ 982 (1101)
|+..++++. . ++.|..||+.+++.+-.+.. .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~ 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence 988877763 2 36799999999998776643 2
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1054 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~ 1054 (1101)
.++..-.++..+.++++++.||.|+.||.++|+.+.+++ ++.+ +...-+.|.. ||+ |+++.+
T Consensus 475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 234444666788899999999999999999999998887 4433 2222466666 455 555443
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=6.3e-09 Score=125.46 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=58.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-eeEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l 904 (1101)
|.|..||+.+++.+..++.+.. ...-.++. .+.++++|+.||.|+.||.++|+.+.+++...+. ..-+.|+.||+..
T Consensus 455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 6799999999999888764432 33335555 6678889999999999999999999888654332 2457788888754
Q ss_pred E
Q 001318 905 V 905 (1101)
Q Consensus 905 ~ 905 (1101)
+
T Consensus 533 v 533 (689)
T 1yiq_A 533 V 533 (689)
T ss_dssp E
T ss_pred E
Confidence 4
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=3.5e-08 Score=110.65 Aligned_cols=158 Identities=8% Similarity=0.037 Sum_probs=100.4
Q ss_pred CCCeEEEEEcCCeEEEEEccCCceeeeeeeeccc-------cCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEE
Q 001318 418 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 490 (1101)
Q Consensus 418 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 490 (1101)
++..|.+++.++.|..+|.++|+.+-... +... ...+.+.-.. ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 47788888889999999999998664321 2111 1223222222 334 46778889999999999999987
Q ss_pred EecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEc
Q 001318 491 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 570 (1101)
Q Consensus 491 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 570 (1101)
.............. . + ..++.++.++.|..+|..+++............ . ..... ...+.
T Consensus 128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~-------------~~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGES-------------APTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-------------CCEEE
T ss_pred EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCC-------------CcEEE
Confidence 76543322221222 1 2 478888899999999999888776655432110 0 00000 00011
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
+..++++..++.|..+|..+++.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 24577788899999999999998877753
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=4.5e-09 Score=127.96 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=156.3
Q ss_pred cccceEEEEEcCCCceEEeeec-----CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 737 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 737 ~~~~i~~l~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+...+..++|||||++|+.+.. ...|++||+ .+|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence 4457889999999998875432 256777666 4444322111 11113567
Q ss_pred EEecCCCEEEEEe-CC-------------eEEEEECCCCce--eeEec--C-CCCCeEEEEEecCCCcEEEEEec----c
Q 001318 812 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT--MATFM--P-PPPAATFLAFHPQDNNIIAIGMD----D 868 (1101)
Q Consensus 812 ~~s~dg~~la~~s-dg-------------~i~vwd~~~~~~--~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~----d 868 (1101)
+|+ ||+.|+.++ +. .|++|++.+... ...+. . +......+.||| |+++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987643 22232 2 344578899999 8887765443 2
Q ss_pred CeEEEEEeecce-EeeeecCcccCeeEEEEcCCCCEEEE-EeCC---CceEEEeCCCcccccceeeecCCCCCCCCCCCe
Q 001318 869 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 943 (1101)
Q Consensus 869 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s-~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 943 (1101)
..|+++|+.++. ....+..+....... |+++|..|+. ...| +.|.+|++.++.......+. . +.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~-~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--P-ERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C-CCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--c-CCC---CEE
Confidence 489999987763 345566666666655 6666666554 4333 56889999886542222221 1 111 233
Q ss_pred EEEEcCCCcEEEE-E-eCC--eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC----CeEEEEEcCCce
Q 001318 944 RVQFHQDQIHFLV-V-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1015 (1101)
Q Consensus 944 ~~~~s~dg~~la~-~-~d~--~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d----g~v~vwd~~~~~ 1015 (1101)
.|++++++|+. . .++ .|++||+.++.. ..+.. .+...+..+.+++|++.|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 89999998887 3 444 689999986543 33332 224567788889999877766555 789999998886
Q ss_pred ee
Q 001318 1016 LR 1017 (1101)
Q Consensus 1016 ~~ 1017 (1101)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=5e-09 Score=113.53 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=149.9
Q ss_pred cceEEEEEcCCCce-EEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001318 739 TKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 817 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg 817 (1101)
......+|+++|+. +++...++.|..|+.. +.... +.. ....+..++++++|
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQQ 97 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTTS
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCCC
Confidence 45678899999984 4555567888888641 11100 000 34568899999999
Q ss_pred CEEEEEe-CCeEEEEECCCCceeeEec---CC-CCCeEEEEEecCCCcEEEE----Eec-------------cCeEEEEE
Q 001318 818 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN 875 (1101)
Q Consensus 818 ~~la~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd 875 (1101)
+++++.. ++.|.+|+.. ++...... +. ...+..+++++ +|+++++ |.. .+.|+.||
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9776655 5789999986 54322211 11 23467899999 8888876 332 25677788
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
..+++..... .....+.++|+||++.|+.+... +.|.+|++..+............ ......+++++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~ 248 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR 248 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence 7666544333 44557889999999988777665 68999998764321111111111 12456789999
Q ss_pred CCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEE
Q 001318 950 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1007 (1101)
Q Consensus 950 dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~ 1007 (1101)
+|++.++. .+.|.+|+.. ++.+..+... ..+.+++|++|++.|+.++.++..+
T Consensus 249 ~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDSD-GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TSCEEECC-SSEEEEECTT-SCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCEEEec-CCcEEEECCC-CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99955555 4569999984 6666665532 2589999999999888887765433
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=2.7e-08 Score=108.53 Aligned_cols=230 Identities=12% Similarity=0.130 Sum_probs=148.0
Q ss_pred cCCCEEEEEe--CCeEEEEECCCC----ceeeEecC-------CCCCeEEEEEecCCCcEEEEEecc------CeEEEEE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTF----KTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd 875 (1101)
.++++|++.+ ++.|+++|+.+. +..++++. ....-..+..+| ++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 8899998887 688999999755 55555531 112345678889 77 66666555 7899999
Q ss_pred eecceEeeeecCccc---CeeEEEEcCCCCEEEEEe-------------------CCCceEEEeCCCcccccceeeecCC
Q 001318 876 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT 933 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~---~V~~l~~s~dg~~l~s~s-------------------~D~~v~iwd~~~~~~~~~~~~~~~~ 933 (1101)
..+++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .+....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~ 248 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE 248 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence 999999998863222 234588999999999885 36789999999864322 222210
Q ss_pred CCCCCCCCCeEEEE--cCCCcEEEEE-------eCCeEEEEEcCCceee--eeccCCC----------------CCCCee
Q 001318 934 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQWVPRE----------------SSAPIT 986 (1101)
Q Consensus 934 ~~~~~~~~v~~~~~--s~dg~~la~~-------~d~~v~vwd~~~~~~~--~~~~~~~----------------h~~~i~ 986 (1101)
.. .....+.| +|+|+++.++ .+++|.+|..+.++.. ..+.... -...+.
T Consensus 249 ~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 249 EN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp TE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 00 12345555 9999988873 3457776655443211 1110000 024578
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEEcC---CceeeeecCCCccc-----CCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 987 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 987 ~l~~spdg~~l~s~s~-dg~v~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.+.+|+||++|.++.. .+.|.+||+. +.+++.++...... +.|. .....|-.++++| ||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 9999999999887764 6789999986 34566655532110 0010 0001355799999 788888887
No 235
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.13 E-value=2.7e-05 Score=92.02 Aligned_cols=525 Identities=9% Similarity=0.016 Sum_probs=253.8
Q ss_pred cCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEE-cCCeEEEEEccCCceeee
Q 001318 366 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQ 444 (1101)
Q Consensus 366 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~ 444 (1101)
....|+..|+........ .+...-..+..++|++.+..|..+. ..+.|..+++++......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 347888888875421110 1222344688999999777776654 467899999876532111
Q ss_pred eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEe-cCCcEE
Q 001318 445 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIK 523 (1101)
Q Consensus 445 ~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~dg~i~ 523 (1101)
.+..-......+++.+.++. ++++-...+.|.+.++........+.........+++.+. +|.++++-- ..+.|.
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIE 153 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEE
Confidence 22222356889999997765 5666677889999997654433333233344556676432 233334331 234555
Q ss_pred EEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEcCC
Q 001318 524 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDAD 602 (1101)
Q Consensus 524 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 602 (1101)
..+++............... ..+++++++..|+.+ ...+.|...+++..........
T Consensus 154 r~~~dG~~~~~l~~~~~~~P---------------------~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~- 211 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWP---------------------NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG- 211 (619)
T ss_dssp EEETTSCSCEEEECSSCSSE---------------------EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------
T ss_pred EEECCCCceEEEEeCCCCCC---------------------cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC-
Confidence 55554322222221122223 345555544445554 3566788888865443332221
Q ss_pred CCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccccccccccccccccCCCCCCcccccchhhhhhhccccccccc
Q 001318 603 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 682 (1101)
Q Consensus 603 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1101)
.......+++..+ ...++-...+.|...|..++.. ...+......... +..+.+..
T Consensus 212 -~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~i~~~~~~p~~-----i~v~~~~~---------------- 267 (619)
T 3s94_A 212 -SLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LREIHSDIFSPMD-----IHAFSQQR---------------- 267 (619)
T ss_dssp -----CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEECCSCCCCCSE-----EEECCGGG----------------
T ss_pred -CCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEEEecCCCCCcE-----EEEEcccc----------------
Confidence 1123456787665 4444555678898888877733 2222111000000 00000000
Q ss_pred ccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc---cccCccccccceEEEEEcCCCceEEeeecC
Q 001318 683 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS---LRLPENLRATKISRLIFTNSGNAILALASN 759 (1101)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 759 (1101)
++...-.+. ........+..-..... ...|.- +.+. ....++. .....+|+. +..
T Consensus 268 qp~~~n~C~----~~ng~Cs~lCl~~~~~~-----------~~~C~C~~g~~l~----~d~~~C~--~~~~~~Ll~-~~~ 325 (619)
T 3s94_A 268 QPNATNPCG----IDNGGCSHLCLMSPVKP-----------FYQCACPTGVKLL----ENGKTCK--DGATELLLL-ARR 325 (619)
T ss_dssp SCCCCCTTT----TTGGGCSSEEEECSSTT-----------SEEEECCTTCCBC----TTSSCBC--SSCSEEEEE-EES
T ss_pred CCCcccccc----CCCCcccceEECCCCCC-----------CceEeCCchheec----ccCcccC--CCCceEEEE-Ecc
Confidence 000000000 00000011111000000 000000 0000 0000000 001112222 223
Q ss_pred ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCc
Q 001318 760 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK 837 (1101)
Q Consensus 760 g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~ 837 (1101)
+.|+..++.... .......+. .-..+.+++|.+.+..|+.+. .+.|+.+++....
T Consensus 326 ~~i~~i~l~~~~--------------------~~~~~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~ 382 (619)
T 3s94_A 326 TDLRRISLDTPD--------------------FTDIVLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG 382 (619)
T ss_dssp SCEEEEESSSTT--------------------CCCEECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cceEEEecCCCc--------------------cceeEEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc
Confidence 344443332110 000010111 234578899999777777776 5889999987644
Q ss_pred eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeee-cCcccCeeEEEEcCCCCEEEEEeC--CCceE
Q 001318 838 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGA--DSQLC 914 (1101)
Q Consensus 838 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~ 914 (1101)
....+...-.....+++...+++++.+-...+.|.+.++.... ...+ ...-..-.+|++.|....|..+.. ...|.
T Consensus 383 ~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~ 461 (619)
T 3s94_A 383 SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461 (619)
T ss_dssp CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEE
Confidence 3333443345678899997456666665667899999876432 3333 223345789999997445554443 35566
Q ss_pred EEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 915 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 915 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
..+++..... ... .+.. .....+++++++..|..+ ..+.|..+++.......... ..-.....|++..
T Consensus 462 r~~~dG~~~~--~l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~ 531 (619)
T 3s94_A 462 RAALDGSDRV--VLV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLG 531 (619)
T ss_dssp EEETTSCSCE--EEE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE--CCCCSSCCEEEET
T ss_pred EEccCCCccE--EEE---eCCC---CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec--cCCCCcEEEEEEC
Confidence 6666653211 111 1111 245789999977777664 55789999986543322221 1123345667654
Q ss_pred CCCEEEEEEcCCeEEEEEcCCce
Q 001318 993 DSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
+ .+.++-...+.|...|..+|.
T Consensus 532 ~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 532 D-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp T-EEEEECTTSSCEEEEESSSCC
T ss_pred C-EEEEeecCCCeEEEEEcCCCc
Confidence 3 344444455678777877773
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.12 E-value=1.9e-09 Score=117.83 Aligned_cols=221 Identities=6% Similarity=-0.074 Sum_probs=144.6
Q ss_pred eEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe----------ccCeEEEEEeecceEeeeecCc-------c
Q 001318 827 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKLKGH-------S 889 (1101)
Q Consensus 827 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~~l~~h-------~ 889 (1101)
+|.++|..+++.+.++.....+ .++++| |+++++++. .++.|.+||..+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8889999999999998755555 799999 888888776 4789999999999999887533 1
Q ss_pred cCeeEEEEcCCCCEEEEEeC--CCceEE--EeCCCcccccceeeecCCC-CCCCCCCCeEEEE-----------------
Q 001318 890 KRITGLAFSHALNVLVSSGA--DSQLCV--WSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQF----------------- 947 (1101)
Q Consensus 890 ~~V~~l~~s~dg~~l~s~s~--D~~v~i--wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~----------------- 947 (1101)
..-..++|+|||++|+++.. +..|.+ +|+.+ . . .+....+ +....+.-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v-~--~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D-Q--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E-E--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c-e--EEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 23567999999999998864 456888 88865 1 0 1111000 0000000011112
Q ss_pred --------------------cCCCcE-EEEEeCCeEEEEEcCCc--eeeeeccCCC-----C---CCCeeEEEEcCCCCE
Q 001318 948 --------------------HQDQIH-FLVVHETQLAIFETTKL--ECVKQWVPRE-----S---SAPITHATFSCDSQL 996 (1101)
Q Consensus 948 --------------------s~dg~~-la~~~d~~v~vwd~~~~--~~~~~~~~~~-----h---~~~i~~l~~spdg~~ 996 (1101)
++++.. ++++. +.+.+.|..+. +.+..+.... + ......++|+||++.
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 223332 33344 67777777543 2333332110 0 112223789999998
Q ss_pred EEEEEc-C--------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEecc
Q 001318 997 VYACFL-D--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1065 (1101)
Q Consensus 997 l~s~s~-d--------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~ 1065 (1101)
++++.. + +.+.++|+.+++.+.++. .+ ..+..++|+| |++ ++++.. .++.|.|+|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----vg-------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NG-------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EE-------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEE----CC-------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 356699999999998876 21 1244799999 565 567776 59999999999
Q ss_pred CCC
Q 001318 1066 ESE 1068 (1101)
Q Consensus 1066 ~~~ 1068 (1101)
+++
T Consensus 346 t~k 348 (368)
T 1mda_H 346 SDQ 348 (368)
T ss_dssp SCE
T ss_pred CCc
Confidence 988
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=3.4e-08 Score=107.70 Aligned_cols=238 Identities=10% Similarity=0.075 Sum_probs=151.5
Q ss_pred CCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-C
Q 001318 748 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G 825 (1101)
Q Consensus 748 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-d 825 (1101)
.++++|++.+. ++.|.++|+.+....+. ..... +...+.. +. .......+.++|+| +++++. +
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~--~~k~i-------e~~~~~~---~~--g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPK--IIKVI-------EPEEVKK---VS--GYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCE--EEEEE-------CHHHHHH---HH--CEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCce--eeeee-------chhhccc---cc--CCCcccceeECCCe-EEEEcCCC
Confidence 77887776665 68899999743321111 00000 0000000 00 11235668889999 555543 4
Q ss_pred ------CeEEEEECCCCceeeEecCCCC---CeEEEEEecCCCcEEEEEe-------------------ccCeEEEEEee
Q 001318 826 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR 877 (1101)
Q Consensus 826 ------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~-------------------~dg~v~vwd~~ 877 (1101)
|.|.++|.++++.+.++..... --..+.|+| +++.+++.. .+.+|.+||+.
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 6899999999999998863322 234588899 888777764 36899999999
Q ss_pred cceEeeeecCc-c-cCeeEEEE--cCCCCEEEEEe------CCCceEEEeCCCcccccceeeecCCCCCC----------
Q 001318 878 VDEVKSKLKGH-S-KRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNRFLQIPTGRTP---------- 937 (1101)
Q Consensus 878 ~~~~~~~l~~h-~-~~V~~l~~--s~dg~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~---------- 937 (1101)
+++.+.++..- . .....+.| +|+++++..++ .+++|.+|..+.++......+.+......
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888877642 1 23345555 99999988776 45688887766543322222211111000
Q ss_pred --CCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcC---CceeeeeccCCCC------------CCCeeEEEEcCCCCEEE
Q 001318 938 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES------------SAPITHATFSCDSQLVY 998 (1101)
Q Consensus 938 --~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~---~~~~~~~~~~~~h------------~~~i~~l~~spdg~~l~ 998 (1101)
.......+.+|+||++|.++ ..+.|.+||+. +.+.+..+...+. ......+++||||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 01356889999999999995 56799999985 3455555544321 11468899999999999
Q ss_pred EEE
Q 001318 999 ACF 1001 (1101)
Q Consensus 999 s~s 1001 (1101)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 887
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=1.7e-08 Score=114.23 Aligned_cols=244 Identities=11% Similarity=0.090 Sum_probs=165.7
Q ss_pred CeeEEEEec-----CCCEEEEEe--CCeEEEEECCCCceeeEecCC-CCCeEEEEE-e-cCCCcEEEEEe----------
Q 001318 807 AVPCFALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM---------- 866 (1101)
Q Consensus 807 ~i~~~~~s~-----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~---------- 866 (1101)
......+|. ||+++.+.. ++.|.+.|+.+.++.+.+.-. ......+++ + | +++++++++
T Consensus 86 d~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSS
T ss_pred CCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCC
Confidence 334466665 999999887 577999999999988854322 345778888 4 8 788888774
Q ss_pred --------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC---------------------------
Q 001318 867 --------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------- 911 (1101)
Q Consensus 867 --------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--------------------------- 911 (1101)
.++.+.++|..+.+...++.--. .-..++++|||+++++++.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 35689999999988887775322 346688999999999888553
Q ss_pred -----------ceEEEeCCCccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce------
Q 001318 912 -----------QLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------ 971 (1101)
Q Consensus 912 -----------~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~------ 971 (1101)
.|.|.|..+.+... ...+.. + .....+.++|||++++++ .+.+|.++|+.+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~ 316 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc
Confidence 35666665521000 111111 1 245789999999999985 67799999999763
Q ss_pred ------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC----------ceeeeecCCCcccCCCCCCCCc
Q 001318 972 ------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNV 1035 (1101)
Q Consensus 972 ------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v 1035 (1101)
.+..... ......++|+|||...++.-.|+.|.+||+++ ...+.++.... .| ||. -
T Consensus 317 l~~~~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qp-Gh~---~ 388 (595)
T 1fwx_A 317 ADPRSAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QP-GHL---K 388 (595)
T ss_dssp CCGGGGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CE-EEE---E
T ss_pred cCcccceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cc-ccc---e
Confidence 2333332 45789999999995455666899999999987 45666665321 21 110 1
Q ss_pred cceEEEEeCCCCCEEEEEec---CCc----------EEEEeccCCC
Q 001318 1036 HPLVIAAHPQEPNEFALGLS---DGG----------VHVFEPLESE 1068 (1101)
Q Consensus 1036 ~~~~i~~~~~d~~~l~s~~~---dg~----------v~vW~~~~~~ 1068 (1101)
..+.++.+| ||++|++... |+- -.+.|++.++
T Consensus 389 ~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 112345667 7899888754 332 2789997666
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.08 E-value=1.1e-07 Score=106.38 Aligned_cols=233 Identities=9% Similarity=0.070 Sum_probs=140.1
Q ss_pred EEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCc
Q 001318 361 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 440 (1101)
Q Consensus 361 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~ 440 (1101)
+++++.++.|..+|..+++.+-...+.. .. . ........+. .....++..+++++.++.|..+|.++|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~-------~~-~--~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAE-------KD-G--WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcc-------cc-c--cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 7777888999999999998875432210 00 0 0000012222 2222356788889999999999999998
Q ss_pred eeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCe-----EEEeeeecCCccEEEE
Q 001318 441 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS 515 (1101)
Q Consensus 441 ~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~~~l~s 515 (1101)
.+-.. .+. .......... ++ .++.++.++.|..+|..+|+.+..+....... ..... . + ..++.
T Consensus 125 ~~W~~-~~~--~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~-~-~~v~~ 193 (376)
T 3q7m_A 125 VAWQT-KVA--GEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A-F-GAAVV 193 (376)
T ss_dssp EEEEE-ECS--SCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E-T-TEEEE
T ss_pred EEEEE-eCC--CceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E-C-CEEEE
Confidence 66432 121 1111112222 33 47778889999999999999988776432211 11121 1 2 46788
Q ss_pred EecCCcEEEEecCCCCceeeecCCCCc----eeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001318 516 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 591 (1101)
Q Consensus 516 ~~~dg~i~~wd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 591 (1101)
++.++.|..+|..+++........... +..+. ..... + .+ .+..++.++.++.+..+|..
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence 888999999999988776655432110 00000 00000 0 00 13467778889999999999
Q ss_pred CCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 592 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 592 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
+++.+...... ....+. .++..+++++.++.+..+|..++
T Consensus 258 tG~~~w~~~~~----~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFI--VDGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp TCCEEEEECCC----CEEEEE--EETTEEEEEETTCCEEEEETTTC
T ss_pred CCcEEeeccCC----CCCCce--EECCEEEEEcCCCeEEEEECCCC
Confidence 99888776532 122232 24667777788888888887766
No 240
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.05 E-value=0.00012 Score=86.53 Aligned_cols=461 Identities=10% Similarity=-0.027 Sum_probs=231.7
Q ss_pred cccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 341 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 341 ~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
....-..+..++|++.+..|+.+-...+.|..+++........ ++...-.....+++.+.++
T Consensus 35 ~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 35 VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp -CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTT
T ss_pred EEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCC
Confidence 3345567889999998887676766678898888875421110 1222234789999999666
Q ss_pred eEEEE-EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccC
Q 001318 421 LFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAP 498 (1101)
Q Consensus 421 ~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~ 498 (1101)
.|..+ ...+.|.+.+.++..... . +...-.....|++.|.+.. +++|- +..+.|...++...............
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEE-E--ECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred EEEEEeCCCCEEEEEECCCCCEEE-E--EeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 55555 557899999998754221 1 2234456788999998765 34443 33466777775533332223233445
Q ss_pred eEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEE
Q 001318 499 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 578 (1101)
Q Consensus 499 v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (1101)
.+.+++.+. ++.+.++-...+.|...|++............... ..+++..+ ..+++
T Consensus 173 P~Glald~~-~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---------------------~gi~~~~~-~ly~t 229 (619)
T 3s94_A 173 PNGLTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP---------------------FALTLFED-ILYWT 229 (619)
T ss_dssp EEEEEEETT-TTEEEEEETTTCCEEEESSSCCEEC---------C---------------------CCEEESSS-EEEEE
T ss_pred CcEEEEEcc-CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc---------------------eEEEEeCC-EEEEe
Confidence 677777533 23444444556778777776422211111011111 12333332 23333
Q ss_pred EeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc-cCCCEEEEEeCC--------CcEEEEEecCccccccccccccc
Q 001318 579 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAY 649 (1101)
Q Consensus 579 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~ 649 (1101)
-...+.|...|..+++....+.... .....+.+. +..+-. +... ..+.+-....+ + .
T Consensus 230 d~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~--------~--~ 295 (619)
T 3s94_A 230 DWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKP--------F--Y 295 (619)
T ss_dssp CTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTT--------S--E
T ss_pred cCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCC--------C--c
Confidence 3456778888888777655554221 122333332 110000 0000 00110000000 0 0
Q ss_pred cccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCccccc
Q 001318 650 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 729 (1101)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 729 (1101)
. +..+.+ .. -...+.........+|+.+ ..+.|+..++........
T Consensus 296 --~--------C~C~~g------------------~~--l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~--- 341 (619)
T 3s94_A 296 --Q--------CACPTG------------------VK--LLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI--- 341 (619)
T ss_dssp --E--------EECCTT------------------CC--BCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE---
T ss_pred --e--------EeCCch------------------he--ecccCcccCCCCceEEEEE-cccceEEEecCCCcccee---
Confidence 0 000000 00 0000000111112233333 335666666654322111
Q ss_pred cccCccccccceEEEEEcCCCceEEeee-cCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCe
Q 001318 730 LRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 808 (1101)
Q Consensus 730 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i 808 (1101)
.++.. .-..+.+++|.+.+..|+.+. ..+.|+.+++.... .... ... .-..+
T Consensus 342 -~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~----------------------~~~v-~~~--~~~~p 394 (619)
T 3s94_A 342 -VLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG----------------------SQFV-VTA--QIAHP 394 (619)
T ss_dssp -ECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------------------CEEE-ECS--SCSCC
T ss_pred -EEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc----------------------cEEE-EEC--CCCCc
Confidence 11110 224577899998655555444 46777776653210 0000 000 12456
Q ss_pred eEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe-ccCeEEEEEeecceEeeee
Q 001318 809 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL 885 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~l 885 (1101)
..+++...+..|+.+. .+.|.+.++........+...-.....+++.|..|.++.+-. ..+.|...++. |+....+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l 473 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVL 473 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEE
Confidence 7899998777676665 588999998754332223334567899999994455444432 23566666654 3322222
Q ss_pred -cCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcc
Q 001318 886 -KGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWE 922 (1101)
Q Consensus 886 -~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~ 922 (1101)
...-...++|++.+++..|..+. ..+.|...++++..
T Consensus 474 ~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 474 VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 22344568899998777776665 44678888887643
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.03 E-value=8.7e-09 Score=113.23 Aligned_cols=176 Identities=12% Similarity=0.124 Sum_probs=106.4
Q ss_pred EEecCCCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEec
Q 001318 414 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 493 (1101)
Q Consensus 414 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 493 (1101)
.+..+| .|.+++.++.|..|| .+++.... ...+...+.++...+++. +..++.+ |..+|. +|+.+..+.
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEEE
Confidence 343445 455667788899999 77775432 233444567778877775 5555555 888985 776654443
Q ss_pred CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCC
Q 001318 494 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 573 (1101)
Q Consensus 494 ~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1101)
..........+. + ..++.++.++.|..+|.. ++...........+.++... +++
T Consensus 95 ~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~---------------------~~g 148 (330)
T 3hxj_A 95 TKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS---------------------EDG 148 (330)
T ss_dssp C-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TTS
T ss_pred CCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc---------------------CCC
Confidence 332222223332 2 467778888999999887 55554444333333333333 333
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEE
Q 001318 574 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 633 (1101)
Q Consensus 574 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 633 (1101)
. +..++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++. + +.|..+|
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d 201 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN 201 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC
Confidence 3 6677788999999998 87776665432 24666777777765443 3 6677776
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=3e-10 Score=126.36 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=111.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccC-ee
Q 001318 816 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 893 (1101)
Q Consensus 816 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~ 893 (1101)
++..+++++ ||.|+.||..+|+.+.++.. ..+.+..+.. +++++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566778887 89999999999999988876 4555555666 6778888889999999999999877666544221 11
Q ss_pred -EEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCce
Q 001318 894 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 971 (1101)
Q Consensus 894 -~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~ 971 (1101)
+..+. ++..|++++.|+.|+.||..+|+..... ..+ ....++|++..+++ +.++.|+.||..+++
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 3457788888999999999998753221 111 12345667777777 578999999999998
Q ss_pred eeeeccCCCCCCCeeEEEEcCCC---CEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 972 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 972 ~~~~~~~~~h~~~i~~l~~spdg---~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.+..+... .....+++++. ..+++++.||.|+.||..+|+.+-++.
T Consensus 152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecc----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 76554321 12233444432 557778899999999999999877654
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=124.82 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCC
Q 001318 858 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 937 (1101)
Q Consensus 858 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 937 (1101)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+..++..+++++.|+.|+.||..+++...........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 456888899999999999999999888776 55666666778888888889999999999887643221111000
Q ss_pred CCCCC-eEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 938 TAQSD-TRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 938 ~~~~v-~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
.+ ...++..++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+
T Consensus 82 ---~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 82 ---LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---HHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ---ccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence 00 011112334 4444 6889999999999998766542 21 24567788999999999999999999999
Q ss_pred eeeecCCCcccCCCCCCCCccceEEEEeCC--CCCEEEEEecCCcEEEEeccCCCccccCC
Q 001318 1016 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1074 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~--d~~~l~s~~~dg~v~vW~~~~~~~~~~~~ 1074 (1101)
.+..+..... . ..++.++ ....+++++.||.|+.||..+|+..|...
T Consensus 152 ~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 8766541111 0 1112220 01467788899999999999999777653
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=2.5e-07 Score=101.45 Aligned_cols=296 Identities=11% Similarity=0.066 Sum_probs=180.5
Q ss_pred ccceeeccCCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceee
Q 001318 701 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 780 (1101)
Q Consensus 701 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 780 (1101)
...+..++.++.+..|| .+... ..... .....+.++.+.++|. +.+++.+ +..+|... .
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~---~~~~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g-~--------- 88 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSV---KWFFK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINPDG-T--------- 88 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCE---EESSC----GGGEEEECCEETTTTE-ECCSSCE--EEEECCCG-G---------
T ss_pred CCeEEEEcCCCEEEEEC-CCCcE---EEEEe----cCCCcccceEEecCCc-EEEecCc--EEEECCCC-c---------
Confidence 44566667778888888 44222 11111 1334556777777776 4444444 66655311 0
Q ss_pred eecCccccCCCccccccccCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC
Q 001318 781 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 859 (1101)
Q Consensus 781 ~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 859 (1101)
.+|....+ .......++. +..+.+++ ++.|..+|.. ++.......+...+.++...+ ++
T Consensus 89 ----~~~~~~~~------------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g 148 (330)
T 3hxj_A 89 ----EKWRFDTK------------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG 148 (330)
T ss_dssp ----GGGGSCC-----------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS
T ss_pred ----EEEEEECC------------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC
Confidence 12222111 1112223333 44566666 8999999998 777766665555667777776 56
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 939 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 939 (1101)
. |..|+.++.|+.||.. ++.+..+......+.++.+.++|.+.+.. +.|..+| .+++... ..... .
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~----~~~~~----~ 214 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW----NFYAG----Y 214 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE----EECCS----S
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE----EEccC----C
Confidence 5 5557888999999988 77776666556667888887788766544 7799999 5544321 11111 1
Q ss_pred CCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 940 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
..+.++.+.++|...+.+.++.+..+|. +++.+..+.. ....+.++.+.++|. |..++.+|.|..+|. +++.+..
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC--CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence 3577888999998777777889999985 4555544432 233445566666665 556778889999995 7777766
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.. +. ..+. ++...+ ++ .|..++.+|.+++...+..+
T Consensus 290 ~~~----~~----~~~~--~~~~d~-~g-~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FET----GS----WIIA--TPVIDE-NG-TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEC----SS----CCCS--CCEECT-TC-CEEEECTTSCEEEEEC----
T ss_pred EEc----CC----cccc--ceEEcC-CC-EEEEEcCCCeEEEEeccccc
Confidence 552 11 1122 344544 44 57778899999998876544
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=4.9e-08 Score=110.53 Aligned_cols=237 Identities=6% Similarity=0.006 Sum_probs=152.2
Q ss_pred cCCCceEEeeecC-ceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE-e-cCCCEEEEE
Q 001318 747 TNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-S-KNDSYVMSA 823 (1101)
Q Consensus 747 s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~-s-~dg~~la~~ 823 (1101)
.+||++++....+ +.|.+.|+.. .+..... .......+..+++ + |++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t----------------------~~~~~ii--~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDV----------------------MKCDAIL--EIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTT----------------------TEEEEEE--ECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCC----------------------ceEeeEE--eCCCCCCCcceeeeecCCCcEEEEe
Confidence 3488888776654 6677777632 2211100 0112345778887 5 899999888
Q ss_pred e-------------------CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccC---------------
Q 001318 824 S-------------------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--------------- 869 (1101)
Q Consensus 824 s-------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--------------- 869 (1101)
+ ++.+.+.|..+.+...++.-.. ....++++| +++++++.+.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccc
Confidence 3 3579999999988888876322 456788999 888888877442
Q ss_pred -----------------------eEEEEEeec--ceE-eeeecCcccCeeEEEEcCCCCEEEEEe-CCCceEEEeCCCcc
Q 001318 870 -----------------------SIQIYNVRV--DEV-KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWE 922 (1101)
Q Consensus 870 -----------------------~v~vwd~~~--~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~~v~iwd~~~~~ 922 (1101)
.|.|.|..+ ++. +..+.. .....++.++|||++++.++ .+.+|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 355556555 333 333322 12346789999999877665 67889999998643
Q ss_pred cc--------cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCC----------ceeeeeccCC---
Q 001318 923 KQ--------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK----------LECVKQWVPR--- 979 (1101)
Q Consensus 923 ~~--------~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~----------~~~~~~~~~~--- 979 (1101)
.. .........| .....++|+|+| ++.++ -+++|.+||+.+ .+.+..+..+
T Consensus 311 ~~~~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp HHHHSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cccccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 10 0111222223 356899999999 65553 789999999987 4455555432
Q ss_pred CCCCCeeEEEEcCCCCEEEEEEc---CCe----------EEEEEcCCcee
Q 001318 980 ESSAPITHATFSCDSQLVYACFL---DAT----------VCVFSAANLKL 1016 (1101)
Q Consensus 980 ~h~~~i~~l~~spdg~~l~s~s~---dg~----------v~vwd~~~~~~ 1016 (1101)
+|...-..+.++|||++|++... |+. -.++|+.++++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred ccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 22222233456899999998763 332 28899976654
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=5.3e-07 Score=108.32 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=111.8
Q ss_pred EEEEecCCCcEEEEEeccCe-------------------EEEEEeecceEeeeecC--cc-------cCeeEEEEcCCCC
Q 001318 851 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN 902 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 902 (1101)
.+++++ +..+++.++.++. |..+|..+|+.+-.++. |. .+.....+..+|+
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 578888 6778888877763 99999999998876653 32 2222223334675
Q ss_pred ---EEEEEeCCCceEEEeCCCcccccceeeec---------CCCCC--------C-----------CCCCCeEEEEcCCC
Q 001318 903 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGRT--------P-----------TAQSDTRVQFHQDQ 951 (1101)
Q Consensus 903 ---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~~--------~-----------~~~~v~~~~~s~dg 951 (1101)
.|+.++.+|.+.++|..+|+......... ..+.. . ....-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999987642111000 00000 0 00001236788887
Q ss_pred cEEEE-E------------------------------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCC
Q 001318 952 IHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 994 (1101)
Q Consensus 952 ~~la~-~------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg 994 (1101)
..+.+ . .++.|..||+.+++.+-.... ..+.....+...+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g 469 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG 469 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence 76654 1 127799999999998766542 2233444455578
Q ss_pred CEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 995 QLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 995 ~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++++++.|+.|++||..+|+.+.+++
T Consensus 470 g~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCcccchhhhhhcChhheEec
Confidence 889999999999999999999998887
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=4.7e-07 Score=93.07 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=137.6
Q ss_pred CeeEEEEecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCC-CeEEEEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 807 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
....++|++|+.++++.+ ++.|+++|..+++.+.++.-... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 467899999875555443 37899999999999988753222 23345555 3456666667899999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
.++..-... ...+++||+.|+++..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532121 234566888777777788999999988664433322211 110 0134567777 77655554 5789
Q ss_pred EEEEEcCCceeeeeccCCC---------C--CCCeeEEEEcCCCCEE-EEEEcCCeEEEEEcCCc
Q 001318 962 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1014 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~---------h--~~~i~~l~~spdg~~l-~s~s~dg~v~vwd~~~~ 1014 (1101)
|.+.|..+++.+..+...+ + ......++|+|+++.| +++.....|++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988876421 0 1356899999998754 55657888998887654
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=4.4e-07 Score=93.24 Aligned_cols=217 Identities=11% Similarity=0.020 Sum_probs=145.6
Q ss_pred CceeeEecCCCC--CeEEEEEecCCCcEEEEEec--cCeEEEEEeecceEeeeecCccc-CeeEEEEcCCCCEEE-EEeC
Q 001318 836 FKTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVLV-SSGA 909 (1101)
Q Consensus 836 ~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~l~-s~s~ 909 (1101)
.+.+.++. |.. ....++|++ +++++++.+. ++.|+++|+.+++.+..+.-... ....+++. +..|. +.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 443 357899999 6766655543 57999999999998888642211 22345554 44554 4456
Q ss_pred CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCC---Ce
Q 001318 910 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PI 985 (1101)
Q Consensus 910 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~---~i 985 (1101)
++.+.++|..+.+...... .+ .+ ....+++||+.++++ .++.|.++|..+.+.+..+....+.. .+
T Consensus 85 ~~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 7899999999866433221 11 11 124466788877774 56799999999999888876533222 36
Q ss_pred eEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccC----CCCCCCCccceEEEEeCCCCCEEEEEecCCcEEE
Q 001318 986 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1061 (1101)
Q Consensus 986 ~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~v 1061 (1101)
..+.|. ||+..+....++.|.+.|..+++.+.++......+ .++ .....+..|+|+|+...+++++...+.|++
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 788888 77655555567899999999999999887431110 010 111344589999965567888888999999
Q ss_pred EeccCCC
Q 001318 1062 FEPLESE 1068 (1101)
Q Consensus 1062 W~~~~~~ 1068 (1101)
-++...+
T Consensus 233 i~l~~~~ 239 (266)
T 2iwa_A 233 IKLHLVR 239 (266)
T ss_dssp EEEEECC
T ss_pred EEEeccc
Confidence 9997654
No 249
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.79 E-value=0.0014 Score=82.60 Aligned_cols=224 Identities=7% Similarity=0.024 Sum_probs=126.0
Q ss_pred EEEEEeCCeEEEEECCCCce--eeEecCCCCCeEEEEEecCCCcEEEEEecc----------------------------
Q 001318 819 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------------------------- 868 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------------------------- 868 (1101)
-++..+++.++|..+.+.+. ++++. -...+..++++| ..+.++++..+
T Consensus 708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 45555566788887754322 22333 235678888998 55555444311
Q ss_pred ---------------------CeEEEEEeecceEeeeecC-cccCeeEEE---EcCC-CCEEEEEe----------CCCc
Q 001318 869 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ 912 (1101)
Q Consensus 869 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~D~~ 912 (1101)
+.|++.|-.+++.+..+.- ....+.+++ |..+ ..+|+.|. ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 2355666656655544321 122344444 4333 46888776 2367
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcC
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 992 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~sp 992 (1101)
|.++++..++. ......... +.+++++-- +| +|+++-.+++++|++...+.++ ..... -..|..+....
T Consensus 866 i~vf~v~~~kL-~lv~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~ 934 (1158)
T 3ei3_A 866 IVVFQYSDGKL-QTVAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKT 934 (1158)
T ss_dssp EEEEEEETTEE-EEEEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEE
T ss_pred EEEEEEECCEE-EEEEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEec
Confidence 99999874321 111111111 356666522 24 6777778999999998765433 11111 11233333333
Q ss_pred CCCEEEEEEcCCeEEEEE--cCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 993 DSQLVYACFLDATVCVFS--AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
.+.+++.|..-..|.++. ...+++.-.-+ .+.+ .+.+++.|.. ...++.+..+|++++.+...
T Consensus 935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 577888888777776654 44444433221 2222 3344788875 35788899999999998765
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.77 E-value=5.4e-06 Score=87.42 Aligned_cols=202 Identities=10% Similarity=-0.017 Sum_probs=132.2
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 884 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~ 884 (1101)
.+..+++++++..|+.+. ++.|..++.........+.........+++++++++++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999887777776 588999999765544334333357889999994455555555678999999864322112
Q ss_pred ecCcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 885 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
..........++++|++..|..+.. .+.|..++++.... ..+... + ......+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~-~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQD-N----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECT-T----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEEC-C----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655543 36788888875321 111111 1 1245889999988777664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|.++|..+........ + ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999998655433332 1 2345667664 45555444 56899999999999988876
No 251
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.77 E-value=0.001 Score=78.47 Aligned_cols=501 Identities=9% Similarity=0.019 Sum_probs=255.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.-..+..++|++.+..|+.+-..++.|..+++....... ++.........+|+.+.++.|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 445788999999888777777778899999987643321 1222224577899998766665
Q ss_pred EE-EcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEecCcccCeEE
Q 001318 424 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS 501 (1101)
Q Consensus 424 s~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 501 (1101)
.+ ...+.|.+.+++...... . +...-.....|++.|.... ++++- +..+.|...++..... ..+.........
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~G 170 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANG 170 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEE
T ss_pred EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcce
Confidence 54 456889999988654221 1 2233456789999987664 33443 3456788888654443 333234455677
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+++.+.. +.+.++-...+.|...|++..... .+........ .+++.. +..+++-..
T Consensus 171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~---------------------glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPF---------------------GLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEE---------------------EEEEET-TEEEEEETT
T ss_pred EEEcccc-CEEEEEECCCCEEEEEcCCCCceE-EeeccCCCce---------------------EEEEEC-CEEEEecCC
Confidence 8874322 234444455678888888653321 1111111112 233332 233344445
Q ss_pred CCcEEEEECCCCceeEEEcCCCCCCCcCeEE-EccCCCEEEEEeCC--------CcEEEEEecCcccccccccccccccc
Q 001318 582 DFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
.+.|...|..+++....+.... .....+. +++..+. +... ..+.+-....+..
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---~~n~C~~~ng~C~~~C~~~~~~~~~------------- 288 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---GWNECASSNGHCSHLCLAVPVGGFV------------- 288 (628)
T ss_dssp TTEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---CCCTTTTTGGGCSSEEEEETTTEEE-------------
T ss_pred CCEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---cceEeccCCCCcchhhhcCCCCCee-------------
Confidence 7788888877776665554221 1223332 2221110 0000 0000000000000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
+..+.+ . .. ...+... .+....++.+. ...|+-..+....... ..+
T Consensus 289 --------C~C~~g-----------~-----~l----~~d~~~C-~~~~~~Ll~s~-~~~i~~i~l~~~~~~~----~~l 334 (628)
T 4a0p_A 289 --------CGCPAH-----------Y-----SL----NADNRTC-SAPTTFLLFSQ-KSAINRMVIDEQQSPD----IIL 334 (628)
T ss_dssp --------EECSTT-----------C-----EE----CTTSSCE-ECCSSEEEEEE-TTEEEEECCCTTCCCC----EEC
T ss_pred --------EEcCCC-----------c-----Ee----cccCCcC-ccccceeeeec-cceEEEEecccccCce----EEE
Confidence 000000 0 00 0000001 11122333332 2445444443211110 111
Q ss_pred CccccccceEEEEEcCCCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 811 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~ 811 (1101)
+. ..-..+.++.|.+....|+.+.. .+.|+.++...... ..++.....+......+..+
T Consensus 335 ~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------------------~~v~~~~~~~~~~~~~p~gl 394 (628)
T 4a0p_A 335 PI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------------------FTVVVSSVPSQNLEIQPYDL 394 (628)
T ss_dssp CC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------------EEEEC--------CCCEEEE
T ss_pred Ee-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------------------eEEEEcccccccccCCcceE
Confidence 11 12345788999987666655543 56777665421100 00000000000023457899
Q ss_pred EEecCCCEEEEEe--CCeEEEEECCCCceeeEe-cCCCCCeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeee-
Q 001318 812 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKL- 885 (1101)
Q Consensus 812 ~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l- 885 (1101)
|+...++.|..+. .+.|.+.++. ++....+ .........+++.|..+.++.+-.... .|...++. |.....+
T Consensus 395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~ 472 (628)
T 4a0p_A 395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLF 472 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEE
T ss_pred EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEE
Confidence 9999888777665 5789999986 4544443 334567899999995555555433222 45555554 3323322
Q ss_pred cCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEE
Q 001318 886 KGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 963 (1101)
Q Consensus 886 ~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~ 963 (1101)
...-...+.|++.+++..|..+.. .+.|...++++.... .... +.. .....+++.. +..+.+ ...+.|.
T Consensus 473 ~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~--~~~~---~~~---~~P~glav~~-~~ly~tD~~~~~i~ 543 (628)
T 4a0p_A 473 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI--VLED---SNI---LQPVGLTVFE-NWLYWIDKQQQMIE 543 (628)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEEC---SSC---SCEEEEEEET-TEEEEEETTTTEEE
T ss_pred eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE--EEEc---CCC---CCcEEEEEEC-CEEEEEECCCCeEE
Confidence 222345689999998777776654 577888998764321 1111 111 1345666654 333333 3556777
Q ss_pred EEEcCCceeeee
Q 001318 964 IFETTKLECVKQ 975 (1101)
Q Consensus 964 vwd~~~~~~~~~ 975 (1101)
..|..+|+....
T Consensus 544 ~~~k~~G~~~~~ 555 (628)
T 4a0p_A 544 KIDMTGREGRTK 555 (628)
T ss_dssp EEETTSSSCCEE
T ss_pred EEECcCCCCcEE
Confidence 777766654433
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.76 E-value=3.7e-06 Score=98.74 Aligned_cols=196 Identities=9% Similarity=-0.086 Sum_probs=119.7
Q ss_pred EEEEecCCCEEEEEe-C----------------CeEEEEECCCCceeeEecCC--C-------CCeEEEEEecCCC---c
Q 001318 810 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 860 (1101)
Q Consensus 810 ~~~~s~dg~~la~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 860 (1101)
.+++.++...++.+. + +.|..+|..+++.+..++.. . ....-+.... ++ +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456677666666654 2 25999999999988776532 1 1111223334 56 4
Q ss_pred EEEEEeccCeEEEEEeecceEeeeecCcc-------------cCe--------------------------eEEEEcCCC
Q 001318 861 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 901 (1101)
Q Consensus 861 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~dg 901 (1101)
+++.++.+|.++++|..+|+.+....... .++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876543211 111 246788888
Q ss_pred CEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCC
Q 001318 902 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 981 (1101)
Q Consensus 902 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h 981 (1101)
.+|+....+....++..... ...+. ...+....+..+|.+. ....++.|..||+.+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~---------~~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLP---------YRAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCC---------CCTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhccccccccccc---------cccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 88888877665555544321 00110 0000001122233321 0013578889999999887665432
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..+.+..+...+.+++.++.||.|+.||..+|+.+.+++
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 223333333356677779999999999999999998887
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.76 E-value=3e-06 Score=99.18 Aligned_cols=166 Identities=13% Similarity=0.132 Sum_probs=103.9
Q ss_pred EEEEecCCCcEEEEEecc----------------CeEEEEEeecceEeeeecC--cc--------cCeeEEEEc-CCC--
Q 001318 851 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HS--------KRITGLAFS-HAL-- 901 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 901 (1101)
.+++.+ +..++..+..+ +.|.-+|..+|+.+-.++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55666666654 3899999999998866543 21 1221 2222 467
Q ss_pred -CEEEEEeCCCceEEEeCCCcccccceeeec----------CCCCC----------C-----------CCCCCeEEEEcC
Q 001318 902 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT----------P-----------TAQSDTRVQFHQ 949 (1101)
Q Consensus 902 -~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~----------~-----------~~~~v~~~~~s~ 949 (1101)
+.++.++.+|.+.++|..+|+......... ..+.. . ....-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567888999999999999987643322110 00000 0 000113467777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEEcCCceeeeeccCCCCCCCeeEEE
Q 001318 950 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 989 (1101)
Q Consensus 950 dg~~la~~----------------------------------------~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~ 989 (1101)
+..++++. ..+.|..||+.+++.+-..... .+...-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2367888999999877655321 1222112
Q ss_pred EcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 990 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 990 ~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+...+.+++.++.|+.++.||..+|+.+-+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23357778889999999999999999998887
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=2.5e-06 Score=102.54 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=55.8
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe-eEEEEcCCCC-E
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V 903 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~ 903 (1101)
|.|..||+.+++.+.....+. ......+.. .+.++++|+.||.|+.||..+++.+..+....+.. .-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 779999999999887765332 233334444 56688889999999999999999998876543221 2345556776 4
Q ss_pred EEEEe
Q 001318 904 LVSSG 908 (1101)
Q Consensus 904 l~s~s 908 (1101)
++.++
T Consensus 516 va~~~ 520 (668)
T 1kv9_A 516 VAIMA 520 (668)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
No 255
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.70 E-value=0.0024 Score=78.47 Aligned_cols=534 Identities=11% Similarity=0.069 Sum_probs=274.2
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
...|.++....+|. |-.|+.+| +..||..+.+-.. ........|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~-------------------~~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ-------------------PETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC-------------------CSCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC-------------------cccCCCceEEEEEe-cCC-cEEE
Confidence 35688988888886 55566554 7889987653211 00111235777764 355 4555
Q ss_pred EEcCCeEEEEEccCCceeeeeeee-c-cccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCc----cc
Q 001318 425 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA 497 (1101)
Q Consensus 425 ~~~d~~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h----~~ 497 (1101)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -+..+|..+++..... ... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 58889987755321 1000 0 1134688888887777 333 4444 5778887766543211 111 12
Q ss_pred CeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEE
Q 001318 498 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 577 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 577 (1101)
.|.++.. +.++..|..|+. +-+..+|..+..... +. .+ ....+..+....+|...+
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~-------~l-------------~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE-------AF-------------HNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-------EE-------------EEEEEEEEEECTTCCEEE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-------CC-------------CCCeEEEEEEcCCCCEEE
Confidence 3666654 444444444554 457777765432111 10 00 011345555555555444
Q ss_pred EEeCCCcEEEEECCCCceeEEEcCCC-----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCcccccccccccccccc
Q 001318 578 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 652 (1101)
Q Consensus 578 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 652 (1101)
|.. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. .. ..+..
T Consensus 248 -gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~-------- 312 (758)
T 3ott_A 248 -GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI-------- 312 (758)
T ss_dssp -EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE--------
T ss_pred -EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE--------
Confidence 444 468888887665432221110 112466777776776544 44445 433321 11 00000
Q ss_pred ccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeeccccCCCcccccccc
Q 001318 653 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 732 (1101)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 732 (1101)
.....
T Consensus 313 ----------------------------------------------------------------~~~~~----------- 317 (758)
T 3ott_A 313 ----------------------------------------------------------------PISQI----------- 317 (758)
T ss_dssp ----------------------------------------------------------------EHHHH-----------
T ss_pred ----------------------------------------------------------------ecccC-----------
Confidence 00000
Q ss_pred CccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEE
Q 001318 733 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 812 (1101)
Q Consensus 733 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~ 812 (1101)
........|.++....+|...+. +.+|. ..++...+... ....+..... ...-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFG-GANGL-IRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEE-ETTEE-EEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEEe-eCCcc-eeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence 00002245777777778875444 45553 33332111000 0000000000 0000235688888
Q ss_pred EecCCCEEEEEeCCeEEEEECCCCceeeEe--cC----CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc------e
Q 001318 813 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E 880 (1101)
Q Consensus 813 ~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------~ 880 (1101)
-..+|++.+. .++.|..||..+++...-. .. ....|.++.... ++++ -.|+..+-|.++|..+. .
T Consensus 380 ~d~~g~lWig-t~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~l-WigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIA-TDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQL-WISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEE-ETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEE-EEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEE-eCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCE-EEEECCCceEEEccccccccCCcc
Confidence 8888876554 4678999998876543221 11 123578887776 5654 44776667888886531 1
Q ss_pred Ee--eee---cC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEE
Q 001318 881 VK--SKL---KG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 954 (1101)
Q Consensus 881 ~~--~~l---~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 954 (1101)
.. ..+ .+ ....|.++...++|.+-+.++..+-|..+|..+++... ...........+.++....+|.+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence 11 111 11 12358899998888877643334458889987754221 111111111356788888889877
Q ss_pred EEEeCCeEEEEEcCCceeeeeccCCC-CCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCC
Q 001318 955 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1033 (1101)
Q Consensus 955 a~~~d~~v~vwd~~~~~~~~~~~~~~-h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1101)
+.+ .+.+..||..+++... +...+ ....|.++... +|. |..++..| |..||..+.+... +. ++..
T Consensus 532 igt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---- 597 (758)
T 3ott_A 532 VGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---- 597 (758)
T ss_dssp EEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred EEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence 665 4568889887665432 11111 13568888764 565 44455555 7778988776542 21 2211
Q ss_pred CccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1034 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1034 ~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
... ...+...+| .|..|+.+| +..++...
T Consensus 598 ~~~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 598 RFT--SLLFDPKED-CVYLGGADG-FGISHSNL 626 (758)
T ss_dssp CCS--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred cee--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence 122 344444354 577777777 55666654
No 256
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=6.9e-07 Score=90.33 Aligned_cols=201 Identities=11% Similarity=0.120 Sum_probs=131.7
Q ss_pred ceeeEecCCCCC--eEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEe-CCC
Q 001318 837 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADS 911 (1101)
Q Consensus 837 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~D~ 911 (1101)
+.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........+++..|..+. .++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4456664 5443 4778998 467777777766 9999999999998887543 2343333333455555544 588
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeE
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 987 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~ 987 (1101)
.+.+||.++.+........ + ....+++|++.|+.+ ..+.|.++|..+.+.+..+...... ..+..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 9999999987654332221 1 223445678877774 4678999999999988887653322 33455
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCC--CCCCCccceEEEEeCCCCCEEEEE
Q 001318 988 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 988 l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-.|+|+|+...++++|
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7776 7876665557889999999999999988854332211 001112345899999554455555
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=1.2e-06 Score=88.45 Aligned_cols=186 Identities=10% Similarity=0.083 Sum_probs=126.2
Q ss_pred CCeeEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeEecCCCCCeEE--EEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 806 EAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
.....+.|+ ++.++.+.+ +| .|+++|+++++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 335788998 665555555 55 79999999999998876433 3333 4444 45555555678999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++..-. ....+++|++.|+.+..++.|.++|..+.+......... .+..- ..+..+.+. +|+..+.. .+
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccC
Confidence 999887532 223334578777777667889999999866544332221 11110 123346665 77765554 67
Q ss_pred CeEEEEEcCCceeeeeccCCCC----------CCCeeEEEEcCCCCEEEEEEc
Q 001318 960 TQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h----------~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
+.|.+.|.++++.+..+...+- ..-...|||+|+++.|++.+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 8999999999999888765321 235688999999888776664
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.66 E-value=4.6e-07 Score=91.44 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=132.2
Q ss_pred ceeeEecCCCCC--eEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeE--EEEcCCCCEEEEEeCCCc
Q 001318 837 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQ 912 (1101)
Q Consensus 837 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~--l~~s~dg~~l~s~s~D~~ 912 (1101)
+.+.++. |... ...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -...... +++.. ++..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCE
Confidence 4455563 4433 4788887 5788888889999999999999988877 2233333 55532 234444456889
Q ss_pred eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCCC---CeeEE
Q 001318 913 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 988 (1101)
Q Consensus 913 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~~---~i~~l 988 (1101)
+.+||.++.+....... . + ....+++|++.|+++ .++.|.++|..+.+.+..+....+.. .+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 99999999765443322 1 1 123344678888775 57899999999999988876543333 34667
Q ss_pred EEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCC----CCCCCCccceEEEEeCCCCCEEEEE
Q 001318 989 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GVSSSNVHPLVIAAHPQEPNEFALG 1053 (1101)
Q Consensus 989 ~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~i~~~~~d~~~l~s~ 1053 (1101)
.|. +|+..+....+..|.+.|..+|+.+..+......+. .+ ...-.+-.|+|+|+..++++||
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~-~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVT-NPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCC-CTTCCEEEEEECTTTCCEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccccc-CcCCceEEEEEcCCCCEEEEeC
Confidence 777 787665555688999999999999998885422110 00 1112244899999666666766
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=2.7e-05 Score=91.39 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=104.3
Q ss_pred EEEEecCCCcEEEEEec--------------------c----CeEEEEEeecceEeeeecC--ccc----CeeE-EEEc-
Q 001318 851 FLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS- 898 (1101)
Q Consensus 851 ~l~~sp~d~~~lasg~~--------------------d----g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s- 898 (1101)
.++++| +..+++++.. | +.|.-+|..+|+.+-.++. |.. .+.. +.+.
T Consensus 250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence 467888 5556666653 2 6899999999998876642 321 1111 2222
Q ss_pred --CCCC---EEEEEeCCCceEEEeCCCcccccceeeec----------CCCC-------CC--------CC---------
Q 001318 899 --HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGR-------TP--------TA--------- 939 (1101)
Q Consensus 899 --~dg~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~-------~~--------~~--------- 939 (1101)
.+|+ .++.++.+|.+.++|..+|+......... ..+. .. ..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 4674 78889999999999999987543221110 0000 00 00
Q ss_pred ---CCCeEEEEcCCCcEEEE-Ee---------------------------------CCeEEEEEcCCceeeeeccCCCCC
Q 001318 940 ---QSDTRVQFHQDQIHFLV-VH---------------------------------ETQLAIFETTKLECVKQWVPRESS 982 (1101)
Q Consensus 940 ---~~v~~~~~s~dg~~la~-~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~h~ 982 (1101)
..-..++++|+...+++ .. ++.|..||+.+++.+-.....
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--- 485 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--- 485 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---
Confidence 00124577777655544 21 478999999999887555421
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
.++..-.+...+.+++.++.||.++.||.++|+.+-+++
T Consensus 486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 122222222356778889999999999999999999887
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.62 E-value=1.2e-05 Score=84.60 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=140.9
Q ss_pred CEEEEEeCCeEEEEECCCCcee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe
Q 001318 818 SYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 892 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V 892 (1101)
.+|+.+..+.|+.+++...... ..+......+..++|+++++.++++-..++.|.+++.........+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4566666568888888754321 11221224577999999445555555567899999987654333333223467
Q ss_pred eEEEEcCCCCEEE-EEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--e--CCeEEEEEc
Q 001318 893 TGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ETQLAIFET 967 (1101)
Q Consensus 893 ~~l~~s~dg~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~--d~~v~vwd~ 967 (1101)
.++++++++..|. +-...+.|.+++++..... ... ..+. .....++++|++..|..+ . .+.|..+++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~--~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLF--DTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE--CSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEE--ECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 8999999765555 4455678999998763311 111 1111 245899999976655553 2 368888887
Q ss_pred CCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 968 TKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 968 ~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.... ...+.. ........++++++++.|+.+. ..+.|.++|.........+. .. -.|..++.. +
T Consensus 154 dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------~~-----~~P~gi~~d--~ 218 (267)
T 1npe_A 154 DGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------GL-----QYPFAVTSY--G 218 (267)
T ss_dssp TSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------CC-----CSEEEEEEE--T
T ss_pred CCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec------CC-----CCceEEEEe--C
Confidence 6432 222211 1234688999999877665444 56789999998654433222 11 224466654 3
Q ss_pred CCEEEEEecCCcEEEEeccCCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.++++....+.|.+++..+++
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCeEEEEeCCCCC
Confidence 4555666567899999998887
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.62 E-value=1.2e-05 Score=94.44 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=69.1
Q ss_pred EEEecC-CCcEEEEeC-CCCceEEEecCccc-C---------e-EEEeeeecCCccEEEEEecCCcEEEEecCCCCceee
Q 001318 469 VITCGD-DKTIKVWDA-TNGAKQYIFEGHEA-P---------V-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 535 (1101)
Q Consensus 469 l~s~~~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 535 (1101)
++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.|..+|..+++.+..
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 555565 789999999 89999887653221 0 0 11121 124788888899999999999888776
Q ss_pred ecCCCCce-eEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEcC
Q 001318 536 YEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 536 ~~~~~~~v-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 601 (1101)
........ ..+..+ + .+ .+..+++++. ++.|+.+|..+|+.+..+..
T Consensus 141 ~~~~~~~~~~~~~~~-------------P--~v----~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQA-------------P--FV----AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EECCCGGGTCBCCSC-------------C--EE----ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ecCCCCCccceeccC-------------C--EE----ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 54322100 000000 0 00 1234555554 79999999999999988764
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=2.8e-06 Score=85.77 Aligned_cols=184 Identities=9% Similarity=0.054 Sum_probs=124.7
Q ss_pred CCeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEE--EEEecCCCcEEEEEeccCeEEEEEeecceEe
Q 001318 806 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 882 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~ 882 (1101)
.....+.|+. +.++.+.+ +|.|+++|+++++.++.+ -...... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3456788873 44444444 689999999999998887 2233333 5554 4566666667899999999999999
Q ss_pred eeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCe
Q 001318 883 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 961 (1101)
Q Consensus 883 ~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 961 (1101)
.++..- ..-+.++ +|++.|+.+..++.|.++|..+.+.............. ..+..+.|. +|+..+.. ..+.
T Consensus 130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCe
Confidence 988753 2224455 57888887777889999999987654433322211110 133456666 77655554 6789
Q ss_pred EEEEEcCCceeeeeccCCC-----------CCCCeeEEEEcCCCCEEEEEE
Q 001318 962 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 962 v~vwd~~~~~~~~~~~~~~-----------h~~~i~~l~~spdg~~l~s~s 1001 (1101)
|.+.|.++++.+..+...+ -..-.+.|||+|+++.|+..+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999999988776421 124678999999877665554
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.58 E-value=6.9e-05 Score=87.93 Aligned_cols=217 Identities=11% Similarity=-0.021 Sum_probs=122.9
Q ss_pred CCeEEEEEcCCeEEEEEccCCceeeeeeeeccccCC------eeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 419 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 419 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~------V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
+..+++++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|.-+|..+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 455666666445999999999876543211110000 012222 233 4677788999999999999998776
Q ss_pred cCccc----CeE-EEeeeec-CCcc-EEEEEec------CCcEEEEecCCCCceeeecCCCCceeE-----EEEc-cCCc
Q 001318 493 EGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTT-----MAYS-ADGT 553 (1101)
Q Consensus 493 ~~h~~----~v~-~v~~~~~-~~~~-~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s-~~~~ 553 (1101)
..... .+. +..+... .+++ .++.++. ++.|+.+|..+++.+.........+.- .... ..+.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 53221 111 1111111 1222 5666543 789999999998887765432211100 0000 0000
Q ss_pred eEEecc--------------ccCceeEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCce
Q 001318 554 RTYQGF--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWDMDSVQL 595 (1101)
Q Consensus 554 ~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~ 595 (1101)
..+.+. ........+++|....++.+.. | +.|..+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 000000 0112234677787777777653 2 5899999999999
Q ss_pred eEEEcCCCCC----CCcCe-EEEc---cCCC---EEEEEeCCCcEEEEEecCccc
Q 001318 596 LTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIR 639 (1101)
Q Consensus 596 ~~~~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~ 639 (1101)
+..++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 9988643221 01111 2222 4674 788899999999999999943
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=3.1e-05 Score=84.15 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=146.6
Q ss_pred CeeEEEEecCCCEEEEEe-CCeEEEEECCCCceeeEecC--------------------CCCCeEEEEEecCCCcEEEEE
Q 001318 807 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg 865 (1101)
...+++++++++++.++. ++.|..||..++... .+.. ....+..+++.+++++ |.++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 456788999998677776 789999998765432 2210 0135788999973454 4445
Q ss_pred eccCeEEEEEeecceEeeeec----C-cccCeeEEEEcC-CCCEEEEEeC-----------------CCceEEEeCCCcc
Q 001318 866 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 922 (1101)
Q Consensus 866 ~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-dg~~l~s~s~-----------------D~~v~iwd~~~~~ 922 (1101)
...+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5555688888765532 2221 1 113468899999 9987776532 3568888877654
Q ss_pred cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCce--eeeeccCCCCCCCeeEEEEcCCCCEEE
Q 001318 923 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 998 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~--~~~~~~~~~h~~~i~~l~~spdg~~l~ 998 (1101)
... ..... .....++++++|+.|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|++.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 211 11111 134679999999876664 56799999987521 1111110 123 78899999999777
Q ss_pred EEEc----------CCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 999 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 999 s~s~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+... .+.|..+|. .|+.+..+. .+.+..- ..+..+++. ++++.++....+.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6654 467888886 477776665 2222111 112256663 46666776678899999986443
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=3.3e-05 Score=90.41 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCe-eEEEEcCCCCEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVL 904 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 904 (1101)
|.|.-||+.+++.+...+... ....-.+.. .+.+++.|+.||.++.||.++|+.+-+++...+.+ .-+.+..||+..
T Consensus 453 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 678999999998877664221 111111222 45577779999999999999999998776443222 235566777643
Q ss_pred E
Q 001318 905 V 905 (1101)
Q Consensus 905 ~ 905 (1101)
+
T Consensus 531 v 531 (599)
T 1w6s_A 531 V 531 (599)
T ss_dssp E
T ss_pred E
Confidence 3
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=8.6e-06 Score=81.69 Aligned_cols=202 Identities=11% Similarity=0.121 Sum_probs=130.3
Q ss_pred ceeeEecCCCC--CeEEEEEecCCCcEEEEEeccC--eEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEE-EEeCCC
Q 001318 837 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADS 911 (1101)
Q Consensus 837 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~-s~s~D~ 911 (1101)
+.+.++. |.. -...+.|+. +.++.+.+.+| .|+++|+.+++.+..+.-... ........++..|. ..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4555663 543 356899985 56777777654 999999999999887753322 22222233344444 445688
Q ss_pred ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCceeeeeccCCCCC---CCeeE
Q 001318 912 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 987 (1101)
Q Consensus 912 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~ 987 (1101)
.+.+||.++.+........ + ....+++|++.|+++ .++.|.++|..+.+.+..+....+. ..+..
T Consensus 86 ~v~v~D~~tl~~~~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEEETTTTEEEEEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEEECCcCcEEEEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 9999999986654332221 1 123444677766664 5778999999999988887654332 23456
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCC---CCCccceEEEEeCCCCCEEEEEe
Q 001318 988 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 988 l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
+.+. +|+..+..-.+..|.+.|..+|+.+..+......+.... ...-.+-.|+|+|+..++++||-
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665 777665555678999999999999998885543322100 11123458999996555566663
No 267
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.49 E-value=0.0097 Score=75.16 Aligned_cols=214 Identities=11% Similarity=0.107 Sum_probs=118.3
Q ss_pred cCccccCCCcccccc-ccCCCCCCCCeeEEEE---ecC-CCEEEEEe-----------CCeEEEEECCCCceeeEe-cCC
Q 001318 783 APQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL---SKN-DSYVMSAS-----------GGKISLFNMMTFKTMATF-MPP 845 (1101)
Q Consensus 783 ~~~lw~~~~g~~~~~-~~~~~~~~~~i~~~~~---s~d-g~~la~~s-----------dg~i~vwd~~~~~~~~~~-~~~ 845 (1101)
.+++.|..+...+.. .+. ....+.+++. ..+ ..++++|. .|.|++|++..++..... ...
T Consensus 808 ~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 455556555543321 121 3344555543 222 46888774 156999998744322111 123
Q ss_pred CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCccccc
Q 001318 846 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 925 (1101)
Q Consensus 846 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~ 925 (1101)
.+.+++++-- +|++||.. ...|++|++...+.+..-..+-..|..+.....+.+++.|+.-..|.+...+..+
T Consensus 885 ~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~--- 957 (1158)
T 3ei3_A 885 KGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME--- 957 (1158)
T ss_dssp SSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---
T ss_pred CCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---
Confidence 5778887755 45555543 5789999998655333111111223333333357789999887778777654322
Q ss_pred ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCc-------e---eeeeccCCCCCCCeeEEE---EcC
Q 001318 926 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------E---CVKQWVPRESSAPITHAT---FSC 992 (1101)
Q Consensus 926 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~-------~---~~~~~~~~~h~~~i~~l~---~sp 992 (1101)
..+........+ ..++++.|-.++.++++-.++.+.++..... + ....+.. ...|+++. +.+
T Consensus 958 ~~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl---G~~vt~~~~~sl~~ 1032 (1158)
T 3ei3_A 958 GNFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL---GEFVNVFCHGSLVM 1032 (1158)
T ss_dssp TEEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC---SSCEEEEEECCSCC
T ss_pred CeEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC---CCcEeeEEeeeeec
Confidence 122222222222 4678888877776666667888888865431 1 1122221 45677775 233
Q ss_pred C---------CCEEEEEEcCCeEEEEEc
Q 001318 993 D---------SQLVYACFLDATVCVFSA 1011 (1101)
Q Consensus 993 d---------g~~l~s~s~dg~v~vwd~ 1011 (1101)
. ...++.++.+|.|.+.-.
T Consensus 1033 ~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1033 QNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp C-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCCccccccccceEEEEecCCEEEEEEE
Confidence 2 234777888999887643
No 268
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.49 E-value=1.8e-05 Score=79.44 Aligned_cols=188 Identities=9% Similarity=0.086 Sum_probs=125.3
Q ss_pred CCCeeEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEeccCeEEEEEeecce
Q 001318 805 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 880 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~ 880 (1101)
......+.|+. +.++.+.+ + +.|+.+|+++++.++.+.-.... --.+++. ++++....-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44567899986 44444444 3 48999999999999887643322 1334444 45666666788999999999999
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 959 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 959 (1101)
.+.++..-.. =+.++ +|+..|+.+..+++|.++|..+.+......... .+.. -..+..+.+. +|+..+.. ..
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCC
Confidence 9998874332 24444 577777766678889999999866543332221 1110 0123344544 67655554 67
Q ss_pred CeEEEEEcCCceeeeeccCCC-----------CCCCeeEEEEcCCCCEEEEEEc
Q 001318 960 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~-----------h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
..|.+.|..+++.+..+...+ -..-.+.||++|+++.|+..+.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 899999999999988776431 1235688999998877666553
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=3.2e-05 Score=84.01 Aligned_cols=251 Identities=8% Similarity=0.011 Sum_probs=145.6
Q ss_pred ceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC------CCCCCCeeEEEE
Q 001318 740 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD------SNPEEAVPCFAL 813 (1101)
Q Consensus 740 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~------~~~~~~i~~~~~ 813 (1101)
...+++++++|+.+++...++.|..|+...... ..|.............+ ......+..+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 345678899988788888888888887532111 00000000000000000 001134788999
Q ss_pred ec-CCCEEEEEeCCeEEEEECCCCceeeEec----C-CCCCeEEEEEecCCCcEEEEEec-----------------cCe
Q 001318 814 SK-NDSYVMSASGGKISLFNMMTFKTMATFM----P-PPPAATFLAFHPQDNNIIAIGMD-----------------DSS 870 (1101)
Q Consensus 814 s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~----~-~~~~i~~l~~sp~d~~~lasg~~-----------------dg~ 870 (1101)
.+ +++++++...+.|..+|..++.. ..+. + .......+++.+.+|++.++-.. +|.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 98 66544443466688898775532 2221 1 12346789998833555554322 367
Q ss_pred EEEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 871 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 871 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
|..||..+++....... ......|+|++||++|..+ ...+.|.+|++.+............. + ...+++++
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi~~d~ 238 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNIKRNA 238 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEEEECT
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCeEECC
Confidence 88888776654332221 2335679999999866555 55688999998863321112221111 2 47799999
Q ss_pred CCcEEEEE-e----------CCeEEEEEcCCceeeeeccCCC-C-CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCC
Q 001318 950 DQIHFLVV-H----------ETQLAIFETTKLECVKQWVPRE-S-SAPITHATFSCDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 950 dg~~la~~-~----------d~~v~vwd~~~~~~~~~~~~~~-h-~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+|++.++. . .+.|..+|.. ++.+..+.... . ...++++++ .+++++++....+.|.++++..
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 99877774 3 3578888875 66665554321 1 245777777 4676666666788899998753
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.46 E-value=0.00019 Score=77.13 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=142.9
Q ss_pred CCCcceeecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEE
Q 001318 333 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 412 (1101)
Q Consensus 333 ~~~~~~~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 412 (1101)
..+.++...+........++|+|+|+ |+++-..++.|..||..+.. .. .+. -...+.+
T Consensus 19 ~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~g 76 (306)
T 2p4o_A 19 LAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSG 76 (306)
T ss_dssp CCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEE
T ss_pred CCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCcee
Confidence 34455555665557789999999998 67777678999999987532 21 111 1236889
Q ss_pred EEEecCCCeEEEEEcC-C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-E
Q 001318 413 VIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-Q 489 (1101)
Q Consensus 413 l~~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~ 489 (1101)
++++++|+++++.... + .|..+|..+++.. ....+. .......++..+++. .+++...++.|+++|..+++. +
T Consensus 77 ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v 152 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI 152 (306)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeE
Confidence 9999999976665433 2 4777777777643 222222 222334555555554 566666688999999776532 2
Q ss_pred EEec---------CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccc
Q 001318 490 YIFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 560 (1101)
Q Consensus 490 ~~~~---------~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~ 560 (1101)
.... +.....+.+ +++. +.++++-...+.|..++++...... ...+ +. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~--~~---------~--- 210 (306)
T 2p4o_A 153 WLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEI--FV---------E--- 210 (306)
T ss_dssp EEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEE--EE---------E---
T ss_pred EEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEE--Ee---------c---
Confidence 2111 111123444 3332 2344555567889999887421110 0000 00 0
Q ss_pred cCceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEc---cCCCEEEEEeCC
Q 001318 561 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 626 (1101)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d 626 (1101)
......++++++|+++++....+.|.+++.. ++...............+++|. ++++.|++.+..
T Consensus 211 ~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 211 QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 0122336778888777776677899999975 5543322211222357889998 888877777654
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.43 E-value=7.4e-05 Score=76.26 Aligned_cols=219 Identities=11% Similarity=0.109 Sum_probs=135.3
Q ss_pred EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC-cccCeeEEEEcCCCCEEEEEeCCCceEEEeCC
Q 001318 841 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD 919 (1101)
Q Consensus 841 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~ 919 (1101)
.+.+-...+..++|+|++++++++...++.|...|.. ++.++++.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999556777778889999999987 887777631 12457789999999877776667889999886
Q ss_pred Cccccc-ceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCC---ceeeeec-----cCCCCCCCeeEEE
Q 001318 920 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHAT 989 (1101)
Q Consensus 920 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~---~~~~~~~-----~~~~h~~~i~~l~ 989 (1101)
...... .......-+..........++++|.+..|.++ ......+|.... ...+... ....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 643211 11111111112223567999999999777774 333344554431 1111111 1112345689999
Q ss_pred EcCCC-CEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEec
Q 001318 990 FSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1064 (1101)
Q Consensus 990 ~spdg-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~ 1064 (1101)
|.|.. ++++.......+.++|.. |+.+..+....-. ++-......+-.|+|.+ +|+ |+..++-+.++++.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 99954 456666677889999965 6677666532110 01001123456899999 676 444576665555543
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=8.8e-05 Score=79.76 Aligned_cols=226 Identities=11% Similarity=-0.011 Sum_probs=137.1
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
.....++++++|+.+++-..++.|..|+... .... .|. ....+..++++++|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------~~~~-----~~~---------------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------NQQI-----HAT---------------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------CEEE-----EEE---------------CSSEEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------ceEE-----EEe---------------CCCCceeEEEcCCCc
Confidence 3567899999998666666778888776421 1100 010 123578899999999
Q ss_pred EEEEEe-CC--eEEEEECCCCceeeEecC-CCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecce--Eee--------e
Q 001318 819 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKS--------K 884 (1101)
Q Consensus 819 ~la~~s-dg--~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--~~~--------~ 884 (1101)
++++.. .+ .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++ ... .
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 666554 22 477778777765433221 122334556655 66656655568899999976542 210 0
Q ss_pred ecCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCC-cccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCe
Q 001318 885 LKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 961 (1101)
Q Consensus 885 l~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~ 961 (1101)
..+.-...+.+ ++|+++|..+ ...+.|.+++++. +........... .....++++++|+++++ ...+.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~ 234 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS 234 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence 01111234555 7888766544 5567899999875 332111221111 13477999999987766 45788
Q ss_pred EEEEEcCCceeee--eccCCCCCCCeeEEEEc---CCCCEEEEEEcCC
Q 001318 962 LAIFETTKLECVK--QWVPRESSAPITHATFS---CDSQLVYACFLDA 1004 (1101)
Q Consensus 962 v~vwd~~~~~~~~--~~~~~~h~~~i~~l~~s---pdg~~l~s~s~dg 1004 (1101)
|.++|.. ++... .+. .....+++++|. ||++.|+.++..+
T Consensus 235 V~~~~~~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPD-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTT-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCC-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECCCC
Confidence 9999986 55422 232 113568999999 8988777666543
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.39 E-value=2.7e-05 Score=95.09 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=95.4
Q ss_pred CcEEEEEe-cCCCeEEEEEecCC----cEEEEeCCCc-ceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCC
Q 001318 347 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 420 (1101)
Q Consensus 347 ~v~~~~~s-pdg~~llatg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 420 (1101)
.+...+|| |||++|+.+.+.+| .|+++|+.++ +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99998665655544 4999999988 63211 0 11 1235689999999
Q ss_pred eEEEEEcC-----CeEEEEEccCCceeeeeeeec-cccCCeeEEEEcCCCCeEEEEEec-CCCcEEEEeCCCCc-eE--E
Q 001318 421 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 490 (1101)
Q Consensus 421 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 490 (1101)
.|+....| ..|.++++.++...... .+. .+......+.|||||+.+++.+.. ....|+++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 36888888876422111 122 223456788999999964333322 24468889988762 22 3
Q ss_pred Ee-cCcccCeEEEeeeecCCccEEEEEecC--C--cEEEEecCC
Q 001318 491 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN 529 (1101)
Q Consensus 491 ~~-~~h~~~v~~v~~~~~~~~~~l~s~~~d--g--~i~~wd~~~ 529 (1101)
.+ ....+...++.|+ .++.+++....+ + .|..+++.+
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 3344455555432 222344444443 3 455556543
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=2.8e-05 Score=95.02 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=111.3
Q ss_pred CeeEEEEe-cCCCEEEEEe--CC----eEEEEECCCC-ceeeE-ecCCCCCeEEEEEecCCCcEEEEEecc-----CeEE
Q 001318 807 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 872 (1101)
Q Consensus 807 ~i~~~~~s-~dg~~la~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~ 872 (1101)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999999775 23 4999999988 63211 11 1234688999 77777766654 3688
Q ss_pred EEEeecceE--eeeec-CcccCeeEEEEcCCCCEEEEEeC---CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEE
Q 001318 873 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 873 vwd~~~~~~--~~~l~-~h~~~V~~l~~s~dg~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
++++.++.. ...+. .......++.|||||++|+..+. ...|.++|+.++.... ....+..+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888876532 12222 22334678899999999886653 3458888888752111 0011222111 2334444
Q ss_pred EcCCCcEEEE-EeC-----CeEEEEEcCCceeeee-ccCCCCCCCeeEEEEcCCCCEEEEEEcCCe--EEEEEc
Q 001318 947 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1011 (1101)
Q Consensus 947 ~s~dg~~la~-~~d-----~~v~vwd~~~~~~~~~-~~~~~h~~~i~~l~~spdg~~l~s~s~dg~--v~vwd~ 1011 (1101)
|+. |..|+. +.. ..|..+|+.++..... +..+.....+..+.+. .+.++++...|+. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 444 554444 432 2677778765322222 2211112245556665 3345566777786 455564
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.36 E-value=0.00087 Score=72.55 Aligned_cols=279 Identities=10% Similarity=0.067 Sum_probs=152.3
Q ss_pred cceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001318 739 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 818 (1101)
Q Consensus 739 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~ 818 (1101)
..+.++.|.+++..++ ++..+.|.. ..+.+ +-|.... .........+.++.+++ +.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~~ 91 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLME-TRDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-NE 91 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEEE-ESSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-TE
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEEE-eCCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-Ce
Confidence 4688899987777666 555665432 11100 1121110 00001244678899976 55
Q ss_pred EEEEEeCCeEEEEECCCCceeeEec---CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee-eecCcccCeeE
Q 001318 819 YVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITG 894 (1101)
Q Consensus 819 ~la~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~ 894 (1101)
.++++..+.|.. ....++.-.... .+...+..+.+.+ ++++++++ .+|.|+. ....|+.-. ....+...+.+
T Consensus 92 ~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 92 GWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEE
T ss_pred EEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEE
Confidence 556555775544 222233322222 2334578888877 67777665 4554432 111122111 12345567899
Q ss_pred EEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeee
Q 001318 895 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 974 (1101)
Q Consensus 895 l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~ 974 (1101)
+++.+++.+++.+...+..+-+|-. +. ....+... . ...+..+++++++..++++.++.+++.+...++.-.
T Consensus 168 ~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp EEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--S---SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred EEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--C---CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 9999999888776544433334321 11 11111111 1 136788999999998888888888776544344433
Q ss_pred eccCC--CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEE
Q 001318 975 QWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1052 (1101)
Q Consensus 975 ~~~~~--~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s 1052 (1101)
.+... .+...+.++++.+++.+++++ .+|.| .+..+.|+.-..+......+. .++ .+.|.+ +..+++
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--~v~~~~--~~~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--KILFFS--PDQGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--EEEEEE--TTEEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--EEEEEC--CCceEE
Confidence 33211 123468999999988877765 47777 455666654443331111111 144 677764 346777
Q ss_pred EecCCcEEEEec
Q 001318 1053 GLSDGGVHVFEP 1064 (1101)
Q Consensus 1053 ~~~dg~v~vW~~ 1064 (1101)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 788997766553
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0002 Score=80.75 Aligned_cols=247 Identities=9% Similarity=0.043 Sum_probs=145.6
Q ss_pred CeeEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEec-cC----eEEEEEeecc
Q 001318 807 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~~ 879 (1101)
....++++| ++..|.++. .+.|+.+|..++... .+.........++|++ ++++|+++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 467899998 466666666 588999999875544 3333556688999999 7775555543 22 333344 333
Q ss_pred eEe--eeecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 880 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 880 ~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
... ..+.. .....+++++| +|.++++-..++.|..++..++... ........ .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 222 22221 23357789999 6777777667788999998865421 11111111 23578999999996666
Q ss_pred E--eCCeEEEEEcCC--cee--eeeccC----CCC---------CCCee-EEEEc--------CCCCEEEEEEcCCeEEE
Q 001318 957 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~--~~~--~~~~~~----~~h---------~~~i~-~l~~s--------pdg~~l~s~s~dg~v~v 1008 (1101)
+ ..+.|..++... +.. +..+.. .+. -.... .+++. ++|.++++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 3 567899887653 221 111110 010 11233 45553 44666666666788999
Q ss_pred EEcCCceeeeecCCCcccCCCC-------CCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1009 FSAANLKLRCRINPSAYLPAGV-------SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1009 wd~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
++ .+|+.............|. ...--.|..++++|+++.++++-...+.|+..+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5665544332100000010 01112577999998656777777777788887764
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.00054 Score=73.80 Aligned_cols=208 Identities=6% Similarity=-0.035 Sum_probs=129.7
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCC---Cceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT---FKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~---~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+.+++|++++..|+.+. ++.|..+++.+ +.... .+.........+++++.+++++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34578999999887777776 58899999876 12222 23323345688999874556666656778999999865
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeCC--CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........++++.|++..|..+... +.|...+++..... .... ... .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~--~~~~-~~~-----~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT-ENI-----QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE--EEEE-CCC-----CCceEEEEeccCCEEEE
Confidence 43222223233457899999876666555543 57888887653211 1111 111 24578999998777766
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+ ..+.|..+|+....................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 5678999998753322211111223456788885 45556666677889999988887665554
No 278
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.00036 Score=78.57 Aligned_cols=249 Identities=8% Similarity=0.018 Sum_probs=146.9
Q ss_pred CeeEEEEecC--CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc---C-eEEEEEeecc
Q 001318 807 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~ 879 (1101)
....++++|+ +..|.++. .+.|+.+|..++.... +.........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 45566665 5889999998766543 444555689999999 77754443311 1 2333332221
Q ss_pred eE-eeeecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~-~~~l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.. ...+. .......+++.| +|.+.++-..++.|+.++..++.... ........ .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 10 01111 223356788999 67766666667889999887654311 11111111 123579999999966664
Q ss_pred --eCCeEEEEEcC--Cceee--eecc----CCCC---------CCCeeEEEE---------cCCCCEEEEEEcCCeEEEE
Q 001318 958 --HETQLAIFETT--KLECV--KQWV----PRES---------SAPITHATF---------SCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 958 --~d~~v~vwd~~--~~~~~--~~~~----~~~h---------~~~i~~l~~---------spdg~~l~s~s~dg~v~vw 1009 (1101)
....|+.++.. ++... ..+. ..+. -.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998765 23211 1111 0011 234678999 7788877777778899999
Q ss_pred EcCCceeeeecCCCc---c-cCCC---CCCCCccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1010 SAANLKLRCRINPSA---Y-LPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1010 d~~~~~~~~~~~~~~---~-~~~~---~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
+. +|.......... . ...| ....--.|..|++.|.++.++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 665543332111 0 0001 001123477899996577777877777888888764
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.24 E-value=8.7e-05 Score=89.35 Aligned_cols=238 Identities=10% Similarity=-0.028 Sum_probs=130.7
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCC-eEEEEEecCCCcEEEEEe-cc-----CeEEEEEe
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV 876 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~-~d-----g~v~vwd~ 876 (1101)
....++++..++++++.|+ +..+.+||..+.+-...-..+... -.++++.+ ++++++.|+ .+ ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 3345678889999999987 467999998875433221112121 23455666 788999988 44 47999999
Q ss_pred ecceEeee--e--cCcccCeeEEEEcCCCCEEEEEeCCC---------ceEEEeCCCcccccceeeecCCCC---CCCCC
Q 001318 877 RVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQ 940 (1101)
Q Consensus 877 ~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~ 940 (1101)
.+.+-... . ......-....+..++..++.++.|+ .+..||..+..-.. ........ .....
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~ 399 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAM 399 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCB
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCC
Confidence 77543221 0 00000000112234555556665544 46778877643211 11111100 00001
Q ss_pred CCeEEEEcC-CCcEEEEE-eCC-----------eEEEEEcCCceeeeeccCCCC-CCCeeEEEEcCCCCEEEEEEcC---
Q 001318 941 SDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD--- 1003 (1101)
Q Consensus 941 ~v~~~~~s~-dg~~la~~-~d~-----------~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~s~s~d--- 1003 (1101)
.-.++.|.. +++.++++ .++ .+.+||..+...........+ ...-.++++.|||++++.|+.+
T Consensus 400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 224555544 67777774 321 688899887765443201111 2233456778899999999865
Q ss_pred --------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEec
Q 001318 1004 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 1004 --------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
..+.+||..+++... +. .++.....+ -.....| |+++++.|+.
T Consensus 480 ~~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred CcCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence 468999998876543 22 111110011 1233446 7889999885
No 280
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.22 E-value=0.029 Score=68.76 Aligned_cols=540 Identities=8% Similarity=0.051 Sum_probs=267.2
Q ss_pred CCCeEEEEEecCCCeEEEEEcCCeEEEEEccCCceeeeeeee-ccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCC
Q 001318 407 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 485 (1101)
Q Consensus 407 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~ 485 (1101)
...|.+|.-..+|.+ -.|..+| +..||-.. ....... ......|.++.-..+|. |..|+.+| +..+|..+
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCCCE-EEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCC
Confidence 457999998888854 4456777 55666332 2111000 11235688888777764 44455554 78999877
Q ss_pred CceEEEecCcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCcee
Q 001318 486 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 565 (1101)
Q Consensus 486 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~ 565 (1101)
++...........|.++.. .++ .|..++.+ -|..+|..+.... .+... . .+.....+.
T Consensus 92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~----------~------~~l~~~~i~ 149 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTR----------R------NGLPNNTIY 149 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEE-EECHH----------H------HCCSCSCEE
T ss_pred CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEE-EeccC----------C------CCcCCCeEE
Confidence 6543211112234665542 244 45555555 5777877653321 11000 0 000011233
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCC----CCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCccccc
Q 001318 566 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 641 (1101)
Q Consensus 566 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 641 (1101)
.+....++...+ +.. +-|..++..+++.. .+.... ....|.++....++..|..|+. +-+..++..++ ..
T Consensus 150 ~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~~- 223 (758)
T 3ott_A 150 SIIRTKDNQIYV-GTY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-QI- 223 (758)
T ss_dssp EEEECTTCCEEE-EET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-EE-
T ss_pred EEEEcCCCCEEE-EeC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-eE-
Confidence 444444444443 444 35778887766543 222111 1123667777777776556664 45777886654 21
Q ss_pred cccccccccccccCCCCCCcccccchhhhhhhcccccccccccccccCCCCCccccccCccceeeccCCCcceeeecccc
Q 001318 642 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 721 (1101)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 721 (1101)
..+...... .+. .+....++... .+.. +-+.+++....
T Consensus 224 ~~~~~l~~~----------~i~------------------------------~i~~d~~g~lW-igT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 KQTEAFHNN----------SIK------------------------------SLALDGNGDLL-AGTD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEE----------EEE------------------------------EEEECTTCCEE-EEET-TEEEEECCTTS
T ss_pred EeccCCCCC----------eEE------------------------------EEEEcCCCCEE-EEeC-CceeEEecCCC
Confidence 111100000 000 00111123333 3333 34555554432
Q ss_pred CCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCccccCCCccccccccCC
Q 001318 722 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~ 801 (1101)
....-......+..-....|.++....+|...+ ++..| +.++... ..+ +.+... ....
T Consensus 262 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~~~------------~~~~~~-------~~~~ 319 (758)
T 3ott_A 262 PLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-SAL------------QFIPIS-------QITG 319 (758)
T ss_dssp CCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C-C------------EEEEHH-------HHSC
T ss_pred cEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-Cce------------eEEecc-------cCCC
Confidence 110000000000111345688998888887444 44456 3332210 000 000000 0000
Q ss_pred CCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCCCc--eeeEecC-------CCCCeEEEEEecCCCcEEEEEeccCeEE
Q 001318 802 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK--TMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQ 872 (1101)
Q Consensus 802 ~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~--~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~ 872 (1101)
......|.++....+|.+.+.. .+.+..++..++. ....+.. ....|.++.-.. ++++.+ |+ ++-+.
T Consensus 320 ~~~~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWi-gt-~~GL~ 395 (758)
T 3ott_A 320 TGDGNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWI-AT-DGSIN 395 (758)
T ss_dssp SCCCCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEE-EE-TTEEE
T ss_pred CCCCceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEEE-Ee-CCcHh
Confidence 0124568888888888766554 4567777765432 1222221 123588888777 565444 55 45788
Q ss_pred EEEeecceEeeee--cC----cccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc---cc---eeeecCCCCCCCCC
Q 001318 873 IYNVRVDEVKSKL--KG----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ---KN---RFLQIPTGRTPTAQ 940 (1101)
Q Consensus 873 vwd~~~~~~~~~l--~~----h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~---~~---~~~~~~~~~~~~~~ 940 (1101)
.||..+++..... .. ....|.++....+|.+.+ |+..+-|.++|..+.... .. .......+- ...
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 472 (758)
T 3ott_A 396 RYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL--SGM 472 (758)
T ss_dssp EEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC--SCS
T ss_pred hcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceeccccccccccc--ccc
Confidence 9998776543221 11 234588888877776555 555555888885431000 00 001111111 113
Q ss_pred CCeEEEEcCCCcEEE-EEeCCeEEEEEcCCceeeeeccCC-CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee
Q 001318 941 SDTRVQFHQDQIHFL-VVHETQLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la-~~~d~~v~vwd~~~~~~~~~~~~~-~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~ 1018 (1101)
.|.++...++|...+ .+..+.|..||..+++........ .....+.++....+|.+.+. +.. -+..||..+++...
T Consensus 473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~ 550 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPKDESQQS 550 (758)
T ss_dssp CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC--CCCCB
T ss_pred eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecCCCceEE
Confidence 588899999999776 344566888999887655432110 11346888888888887654 444 47888877665432
Q ss_pred ecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1019 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1019 ~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+. ...++. ..+. ++... ++++.+ ++..| |..++..+.+
T Consensus 551 -~~-~~gl~~----~~i~--~i~~~--~g~lWi-~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 551 -IS-FGSFSN----NEIL--SMTCV--KNSIWV-STTNG-LWIIDRKTMD 588 (758)
T ss_dssp -CC-CCC-------CCEE--EEEEE--TTEEEE-EESSC-EEEEETTTCC
T ss_pred -ec-ccCCCc----cceE--EEEEC--CCCEEE-ECCCC-eEEEcCCCce
Confidence 21 111221 2244 55542 455444 44444 7778877654
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.21 E-value=0.0012 Score=72.18 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=132.2
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
..+..++|++.+..|.... .+.|+.+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478999998877777776 68899999886654444443344567899997456666666667899999986443222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEe-CC-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|.+..|..+. .. +.|...+++..... ... ..+. .....++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~--~~~~----~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIA--DTHL----FWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESC--CSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEE--ECCC----CCcceEEEeCCCCEEEEEECCC
Confidence 2333334568999998666555444 34 67888887763211 111 1111 245789999877766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+........+. ........+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 789999987543322221 22446778888 345555666677889988877777665554
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.00063 Score=74.31 Aligned_cols=237 Identities=12% Similarity=0.044 Sum_probs=146.4
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeecC
Q 001318 808 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 887 (1101)
Q Consensus 808 i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~ 887 (1101)
.+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+..
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34555555 346666666778888887655444443 3445889999984566666655778999999876543333332
Q ss_pred cccCeeEEEEcCCCCE-EEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC-CeEE
Q 001318 888 HSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLA 963 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d-~~v~ 963 (1101)
......++++.+.+.. .++-...+.|.+.++++... .... ..+ . .....++++|.+..|..+ .. +.|.
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~--~~~-l---~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLL--WQS-L---EKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CTT-C---SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEE--eCC-C---CCcceEEEecCcCeEEEeccCCCCEEE
Confidence 2344578999875544 45555667899999876431 1111 111 1 245889999976666553 34 7788
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEE
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1042 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 1042 (1101)
.+++...... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|..+++
T Consensus 186 r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav 253 (349)
T 3v64_C 186 ASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITV 253 (349)
T ss_dssp EEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEE
T ss_pred EEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEE
Confidence 8888754332 2211 2244678999998777665554 5678999998754332222211 123446777
Q ss_pred eCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1043 HPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1043 ~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
. ++.+.++-...+.|...+..+|+
T Consensus 254 ~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 F--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEecCCCCeEEEEEccCCC
Confidence 4 35667777777888888866666
No 283
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.17 E-value=0.0005 Score=76.35 Aligned_cols=205 Identities=10% Similarity=-0.017 Sum_probs=132.8
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
..+..++|++.+..|+... .+.|+.+++........+.........+++++.+++++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4578999998777777766 68899999886654444443334567889997456666666667789888876433222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|++..|..+.. . +.|...+++..... .... .+. .....++|+|++..|..+ ..
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~~----~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIAD--THL----FWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--EEEE--CCC----CCeeeEEEeCCCCEEEEEECCC
Confidence 23333355789999987766665543 3 56777777653211 1111 111 235789999877766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+........+. ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 268 ~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 268 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 789999987543322222 22446788888 345566666678889999977887766655
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.00096 Score=68.01 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=126.6
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
-...+..++|+|++..|+++...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 446799999999988888888889999999998 77665422 122 24678899999998777
Q ss_pred EEEcCCeEEEEEccCCceee--eeeee----ccccCCeeEEEEcCCCCeEEEEEecCCC-cEEEEeC-CCCceEEEec--
Q 001318 424 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDK-TIKVWDA-TNGAKQYIFE-- 493 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~~~~s~d~~~~~l~s~~~d~-~i~iwd~-~~~~~~~~~~-- 493 (1101)
+.-.++.+.++++.....+. ....+ .........++|+|+++.+++ +.-.+. .|..|+- ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCceeeecch
Confidence 76567889999887654322 11111 123456789999999985333 333332 4555541 1122222221
Q ss_pred -----CcccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEE
Q 001318 494 -----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 568 (1101)
Q Consensus 494 -----~h~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 568 (1101)
.+...+.++++++. .+++++.....+.+..+|.... ....+....+. .+ + ...-.....++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~--------~~---l-~~~~~qpEGia 230 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS--------RG---L-SHNIKQAEGVA 230 (255)
T ss_dssp HHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG--------GG---C-SSCCCSEEEEE
T ss_pred hhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc--------CC---c-ccccCCCCeeE
Confidence 12335678888764 4567777777888888886642 32222221100 00 0 00011334466
Q ss_pred EcCCCCEEEEEeCCCcEEEEEC
Q 001318 569 FDTTKNRFLAAGDDFSIKFWDM 590 (1101)
Q Consensus 569 ~~~~~~~l~~~~~dg~i~iwd~ 590 (1101)
|+++|+ ++..++.+.++.+.-
T Consensus 231 ~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 231 MDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp ECTTCC-EEEEETTTEEEEEEC
T ss_pred ECCCCC-EEEEcCCceEEEEEe
Confidence 666666 555577777777654
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.15 E-value=0.0013 Score=73.30 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=133.6
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+..++|++.+..|.... .+.|+.+++... .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45688999999888887776 588999998752 223333334456788999984566666666678999999875
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........+|++.|.+.+|+.+.. .+.|...+++..... .... .+ . .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~-l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC-C---CceEEEEEEeCCCEEEE
Confidence 4433333333445789999997666665543 367888888763321 1111 11 0 24588999988877776
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+ ..+.|..+|+............+.-.....|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 5678999998765433332221223456678873 34455566667889999988887766554
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.10 E-value=0.0095 Score=64.29 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=116.5
Q ss_pred cCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE
Q 001318 343 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 422 (1101)
Q Consensus 343 ~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 422 (1101)
.....+.+|.|.+++. ++++| .+|.| +...+.|+.-..... ........+.+|+|++ +..+
T Consensus 33 ~~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~ 93 (327)
T 2xbg_A 33 PTTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGW 93 (327)
T ss_dssp SCSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEE
T ss_pred CCCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEE
Confidence 3456799999988887 46654 45654 333333432111000 0112344789999986 4444
Q ss_pred EEEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCce-EEEecCcccCeEE
Q 001318 423 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYS 501 (1101)
Q Consensus 423 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 501 (1101)
+ ++.++.|.. ..+.|+..........+.+.+..+.+.+++. +++.+. ++.|..- ...|+. .....++...+..
T Consensus 94 ~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 94 I-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp E-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred E-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4 556674443 4444554432211112345678888877776 455544 5554322 123332 2223345566777
Q ss_pred EeeeecCCccEEEEEecCCcEE-EEecCCCCceeee-cCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEE
Q 001318 502 VCPHHKENIQFIFSTALDGKIK-AWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 579 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~-~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (1101)
+.+. +++.+++.+ .+|.+. -+|-. +..-..+ ......+. .+.+.+++. ++.+
T Consensus 168 ~~~~--~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~---------------------~~~~~~~g~-~~~~ 221 (327)
T 2xbg_A 168 LNRS--PSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLH---------------------NMGFTPDGR-LWMI 221 (327)
T ss_dssp EEEC--TTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEE---------------------EEEECTTSC-EEEE
T ss_pred EEEc--CCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccc---------------------eeEECCCCC-EEEE
Confidence 7764 445566555 445443 33320 1110111 11122233 344445444 4455
Q ss_pred eCCCcEEEEECCCCceeEEEcCC--CCCCCcCeEEEccCCCEEEEEeCCCcE
Q 001318 580 GDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGI 629 (1101)
Q Consensus 580 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i 629 (1101)
+.+|.+++++.+.++....+... .....+.++.+.+++..++++. +|.+
T Consensus 222 ~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 222 VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 66777777653334433322211 1112467888888887777654 5655
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.10 E-value=0.0036 Score=67.20 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=126.6
Q ss_pred CcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEE-EcCCeEEEEEccCC---ceee
Q 001318 368 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR 443 (1101)
Q Consensus 368 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~ 443 (1101)
..|+..|+.+.+.... + .....+..++|+++++.|..+ ..++.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887654321 1 223467899999976666555 45689999998861 2222
Q ss_pred eeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcE
Q 001318 444 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI 522 (1101)
Q Consensus 444 ~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i 522 (1101)
. .+.........+++.+.++. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222345688999876665 4566667889999997654433333333345677776432 33344443333 567
Q ss_pred EEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcC
Q 001318 523 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 523 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
...+++.............. ...+++++++..|+.+. ..+.|..+|++..........
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~---------------------P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~ 204 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQW---------------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED 204 (316)
T ss_dssp EEEETTSCCEEEEECSSCSC---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred EEEcCCCCCeEEEEECCCCC---------------------ceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence 77766532221111111222 33455555545555544 567899999874333222222
Q ss_pred CCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 602 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 602 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.........+++. .+.++++-...+.|..++..++
T Consensus 205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 2222234567775 4556666666788988887766
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.09 E-value=0.0027 Score=70.67 Aligned_cols=230 Identities=10% Similarity=0.063 Sum_probs=143.6
Q ss_pred CEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc----eEeeeecCcccCee
Q 001318 818 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 893 (1101)
Q Consensus 818 ~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----~~~~~l~~h~~~V~ 893 (1101)
.+|+.+....|+..++........+. ....+..++|++.+++++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 35666667889999998765444443 45678999999855555555556789999988652 12222332344577
Q ss_pred EEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe---CCeEEEEEcCC
Q 001318 894 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 969 (1101)
Q Consensus 894 ~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d~~v~vwd~~~ 969 (1101)
+|++.+. +.+.++-...+.|.+.++++.... ..+. ... .....++++|.+.+|..+. ...|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~--~l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEE--EEEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceE--EEEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 8999874 444555556778999998764321 1111 111 2458999999766666542 36788888875
Q ss_pred ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC
Q 001318 970 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1048 (1101)
Q Consensus 970 ~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~ 1048 (1101)
........ ..-.....|+++++++.|+.+. ..+.|..+|++.......+.... ..-.|.+++.. .+.
T Consensus 235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~l~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVF--EDK 302 (400)
T ss_dssp CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--------TTSSEEEEEEE--TTE
T ss_pred CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--------CCCCCEEEEEe--CCE
Confidence 44332222 2235789999999887776654 46789999987543332222101 11234567764 345
Q ss_pred EEEEEecCCcEEEEeccCCC
Q 001318 1049 EFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1049 ~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
++++-...+.|..++..+|+
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 66777777889999977776
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.06 E-value=0.00025 Score=85.28 Aligned_cols=243 Identities=12% Similarity=0.019 Sum_probs=139.5
Q ss_pred EEEEec-CCCEEEEEe-CC-----------eEEEEECCCCcee--eEecC-CCCCeEEEEEecCCCcEEEEEec-cCeEE
Q 001318 810 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFMP-PPPAATFLAFHPQDNNIIAIGMD-DSSIQ 872 (1101)
Q Consensus 810 ~~~~s~-dg~~la~~s-dg-----------~i~vwd~~~~~~~--~~~~~-~~~~i~~l~~sp~d~~~lasg~~-dg~v~ 872 (1101)
++++.+ +++.++.|+ +. .+.+||..+++.. ..+.. +.....++++.. +++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 5889999876533 22322 333445677888 8999999984 55899
Q ss_pred EEEeecceEeeeecCcccCe-eEEEEcCCCCEEEEEe-CC-----CceEEEeCCCccccccee---eecCCCCCCCCCCC
Q 001318 873 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSD 942 (1101)
Q Consensus 873 vwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~v 942 (1101)
+||..+++-...-..+..+. .++++.+||++++.|| .+ ..+.+||..+.+-..... .......
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------- 341 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------- 341 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-------
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-------
Confidence 99988764332211122222 2455667999999998 44 568999998754211100 0011110
Q ss_pred eEEEEcCCCcEEEE----------EeCCeEEEEEcCCceeeeeccCCC-------CCCCeeEEEEc-CCCCEEEEEEcCC
Q 001318 943 TRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA 1004 (1101)
Q Consensus 943 ~~~~~s~dg~~la~----------~~d~~v~vwd~~~~~~~~~~~~~~-------h~~~i~~l~~s-pdg~~l~s~s~dg 1004 (1101)
....+..+++.++. .....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421 (656)
T ss_dssp TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence 00112233333333 234567889988776443221110 01122344443 4788888888543
Q ss_pred -----------eEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----------CcEEEE
Q 001318 1005 -----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1062 (1101)
Q Consensus 1005 -----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----------g~v~vW 1062 (1101)
.|.+||..+....... ...++..... .+....| ++++++.|+.+ ..+.+|
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~-----~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTF-----HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBS-----CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCccc-----CCeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 6888888877654332 0123322111 1445556 67899999865 468999
Q ss_pred eccCCC
Q 001318 1063 EPLESE 1068 (1101)
Q Consensus 1063 ~~~~~~ 1068 (1101)
|+.+.+
T Consensus 494 dp~t~~ 499 (656)
T 1k3i_A 494 VPEQDT 499 (656)
T ss_dssp EGGGTE
T ss_pred cCCCCc
Confidence 997755
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.05 E-value=0.0022 Score=71.04 Aligned_cols=216 Identities=10% Similarity=-0.030 Sum_probs=129.0
Q ss_pred eecccCCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC
Q 001318 339 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 418 (1101)
Q Consensus 339 ~~~~~h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 418 (1101)
.........+..++|++.+..|+.+-...+.|..++........ ++.........+++.+.
T Consensus 109 ~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~ 169 (386)
T 3v65_B 109 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWV 169 (386)
T ss_dssp EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETT
T ss_pred EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeC
Confidence 33444556789999999877777777778899999988764322 11222235578999986
Q ss_pred CCeEE-EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCC-CcEEEEeCCCCceEEEecCcc
Q 001318 419 GSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHE 496 (1101)
Q Consensus 419 g~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~ 496 (1101)
+..|. +-...+.|.+.+++...... .+.........+++.|.+.. ++++-... +.|...++.............
T Consensus 170 ~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 245 (386)
T 3v65_B 170 HDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHL 245 (386)
T ss_dssp TTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 55554 44556789888887643222 12233456789999998775 34444444 788888865443333333334
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEE
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 576 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 576 (1101)
...+.+++++.. +.+.++-+..+.|..+|++.......+.........+ ++ ..+..+
T Consensus 246 ~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi---------------------av-~~~~ly 302 (386)
T 3v65_B 246 FWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI---------------------TV-FEDSLY 302 (386)
T ss_dssp SCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE---------------------EE-ETTEEE
T ss_pred CCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE---------------------EE-ECCEEE
Confidence 456788885433 2445555556788888876533222222222222233 33 122344
Q ss_pred EEEeCCCcEEEEECCCCceeEEEc
Q 001318 577 LAAGDDFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 577 ~~~~~dg~i~iwd~~~~~~~~~~~ 600 (1101)
++-...+.|..++..+++.+..+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 455566778888866676665554
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.05 E-value=0.0012 Score=69.86 Aligned_cols=196 Identities=9% Similarity=0.144 Sum_probs=125.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCC----c---EEEEEec---cCeEEEEEee--cceEee
Q 001318 817 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGMD---DSSIQIYNVR--VDEVKS 883 (1101)
Q Consensus 817 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~~---dg~v~vwd~~--~~~~~~ 883 (1101)
..+++... .+.+.+||+ +++.++.+.. +.++.+..-| +- + ++++... +++|.+|++. ++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 34444333 688999999 8898888863 5677777666 32 2 2333333 5799999884 333 43
Q ss_pred eecC------cc-cCeeEEEE--cCC-CC-EEEEEeCCCceEEEeCCC---cccccceeeecCCCCCCCCCCCeEEEEcC
Q 001318 884 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 949 (1101)
Q Consensus 884 ~l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 949 (1101)
.+.. .. ..+..+|+ ++. ++ ++++...+|.+..|++.. +... .+.+..+.-. +.+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcC
Confidence 3321 11 55777888 664 44 678888899999999843 2221 2222222211 3678899999
Q ss_pred CCcEEEEE-eCCeEEEEEcC-----CceeeeeccCCCCCCCeeEEEE--cCCCC-EEEEEE-cCCeEEEEEcC-Cceeee
Q 001318 950 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1018 (1101)
Q Consensus 950 dg~~la~~-~d~~v~vwd~~-----~~~~~~~~~~~~h~~~i~~l~~--spdg~-~l~s~s-~dg~v~vwd~~-~~~~~~ 1018 (1101)
....|.++ .+..|..|+.+ +++.+..+....-...+..|++ .++++ +|++++ .+.+..|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 88888886 55567777754 3455554432222347888888 56666 676666 57799999996 788888
Q ss_pred ecCC
Q 001318 1019 RINP 1022 (1101)
Q Consensus 1019 ~~~~ 1022 (1101)
.|..
T Consensus 270 ~f~I 273 (355)
T 3amr_A 270 DFRI 273 (355)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8763
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.0021 Score=72.27 Aligned_cols=255 Identities=11% Similarity=0.082 Sum_probs=138.4
Q ss_pred CCcEEEEEec-CCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEE
Q 001318 346 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 424 (1101)
Q Consensus 346 ~~v~~~~~sp-dg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 424 (1101)
.....++|+| ++..|+++-. .+.|+.+|..+++... +.........++|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4678999998 4554455444 3889999988765432 1223456889999999997766
Q ss_pred EEcC----C-eEEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEec-Cccc
Q 001318 425 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEA 497 (1101)
Q Consensus 425 ~~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~ 497 (1101)
+... . .+.+.+.. +.... ...+. .......++++| ++. ++++-..++.|..++..++....... +...
T Consensus 196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 34444433 32221 01122 123467789999 555 66676677899999988765422222 1223
Q ss_pred CeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEcc--CCce--E-EeccccCceeEEEEc-
Q 001318 498 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA--DGTR--T-YQGFRKRSLGVVQFD- 570 (1101)
Q Consensus 498 ~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~--~-~~~~~~~~~~~~~~~- 570 (1101)
....++|+ ++++ ++++-...+.|..++.+....... .+..++-.+ .|.. . ....-..+...+++.
T Consensus 271 ~P~gia~~--pdG~~lyv~d~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~ 342 (430)
T 3tc9_A 271 WEFHIQFH--PSGNYAYIVVVNQHYILRSDYDWKTKRLT------TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN 342 (430)
T ss_dssp CCEEEEEC--TTSSEEEEEETTTTEEEEEEEETTTTEEC------CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred cceeEEEc--CCCCEEEEEECCCCEEEEEeCCccccccc------ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence 45668874 5556 445555678898887764211110 000111000 0000 0 000001111134442
Q ss_pred -------CCCCEEEEEeCCCcEEEEECCCCceeEEEcC---------CC------CCCCcCeEEEcc-CCCEEEEEeCCC
Q 001318 571 -------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNK-DGCLLAVSTNDN 627 (1101)
Q Consensus 571 -------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~-~~~~l~~~~~dg 627 (1101)
++++++++=...+.|+.++. +|........ .+ .......+++++ ++.++++-..++
T Consensus 343 ~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 343 PAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp GGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred ccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 33555555556677888883 4543333321 00 122456899999 466666666677
Q ss_pred cEEEEEec
Q 001318 628 GIKILATS 635 (1101)
Q Consensus 628 ~i~iw~~~ 635 (1101)
.|+.++++
T Consensus 422 rIr~i~~e 429 (430)
T 3tc9_A 422 RIRKIGYE 429 (430)
T ss_dssp EEEEEEEC
T ss_pred eEEEEccC
Confidence 88887753
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0031 Score=70.87 Aligned_cols=253 Identities=8% Similarity=-0.005 Sum_probs=147.6
Q ss_pred CeeEEEEec-CCCEEEEEe--CCeEEEEECCCCceeeEecCC---CCCeEEEEE-------ecCCCcEEEEEeccC----
Q 001318 807 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS---- 869 (1101)
Q Consensus 807 ~i~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg---- 869 (1101)
....|+|+| +...|.++. .+.|++.|.+++......... ......++| ++ ++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 477899998 455555555 367999999876655444322 235889999 99 777555555443
Q ss_pred ---eEEEEEeec-ceEe-----eeecCcccCeeEEEEcCC-CCEEEEEeCCCceEEEeCC-------Cccc------c--
Q 001318 870 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q-- 924 (1101)
Q Consensus 870 ---~v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~-------~~~~------~-- 924 (1101)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2221 122111 23457889995 5555666677889999987 4432 0
Q ss_pred --cceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEc--CCcee-----e-eeccCCCC---------CC
Q 001318 925 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET--TKLEC-----V-KQWVPRES---------SA 983 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~--~~~~~-----~-~~~~~~~h---------~~ 983 (1101)
...+.....+ .....++|+|+|++|.++ ....|+.++. .++.. + ..+...++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0111222211 245899999999965553 5678888654 33321 1 11111111 12
Q ss_pred Cee-EEEEc-------CCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcc----------c-CCC---CCCCCccceEEE
Q 001318 984 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY----------L-PAG---VSSSNVHPLVIA 1041 (1101)
Q Consensus 984 ~i~-~l~~s-------pdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~----------~-~~~---~~~~~v~~~~i~ 1041 (1101)
... .++.. ++|.++++=.....|+.++ .+|... ++.-... . ..| ....--.|..|+
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 5677777777788999999 566443 3321100 0 011 001123477899
Q ss_pred EeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1042 AHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1042 ~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
+.++++.++++-.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998547777777778899999987654
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=0.002 Score=72.40 Aligned_cols=254 Identities=7% Similarity=-0.009 Sum_probs=141.4
Q ss_pred ceEEEEEcC-CCceEEeeec-CceEEeeeccccccCCCCceeeeecCccccCCCccccccccCCCCCCCCeeEEEE----
Q 001318 740 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 813 (1101)
Q Consensus 740 ~i~~l~~s~-~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~---- 813 (1101)
....++|+| +...|+.+.. .+.|++.|+ +++.+....-.+...-.....++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3444555544 456666654 222222211111112335889999
Q ss_pred ---ecCCCEEEEEe-CC-------eEEEEECCC-Ccee-----eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEe
Q 001318 814 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 876 (1101)
Q Consensus 814 ---s~dg~~la~~s-dg-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~ 876 (1101)
+++|++|+++. .+ .|.+++... +... ..+. .......++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266776443 2221 1222 11245678899966666666778889999999
Q ss_pred e-------cceE-----------eeee--cCcccCeeEEEEcCCCCEEEEE-eCCCceEEEeCCCcc--cccceeeecC-
Q 001318 877 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWE--KQKNRFLQIP- 932 (1101)
Q Consensus 877 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~dg~~l~s~-s~D~~v~iwd~~~~~--~~~~~~~~~~- 932 (1101)
. ++.. ...+ .+....-..|+|+|+|++|..+ .....|+.++.+... ......+.-.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 7 4443 1121 1122345789999999965544 456678886654321 1000111110
Q ss_pred --CCCC------CCCCCCe-EEEEc-------CCCcEEEE-EeCCeEEEEEcCCceeeeeccCC------------C---
Q 001318 933 --TGRT------PTAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 980 (1101)
Q Consensus 933 --~~~~------~~~~~v~-~~~~s-------~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~------------~--- 980 (1101)
.+.. ....... .++.. ++|.++++ ..+.+|+.++. ++.. .++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence 1110 0012234 44554 56666666 47789999984 4533 233211 1
Q ss_pred -------CCCCeeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeee
Q 001318 981 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRC 1018 (1101)
Q Consensus 981 -------h~~~i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~ 1018 (1101)
.-.....|+++++ |.++++=+.+..|+.++++....+.
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 1234778999997 7777766677889999987665543
No 295
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0035 Score=70.48 Aligned_cols=254 Identities=13% Similarity=0.116 Sum_probs=137.8
Q ss_pred CCcEEEEEecC--CCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 346 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 346 ~~v~~~~~spd--g~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
.....++|+|+ +..|+++ ...+.|+.+|..+++... +........+++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 45679999995 3334444 333899999998776543 222345689999999999444
Q ss_pred EEEcC---Ce-EEEEEccCCceeeeeeeeccccCCeeEEEEcC-CCCeEEEEEecCCCcEEEEeCCCCceEEEe-c-Ccc
Q 001318 424 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-E-GHE 496 (1101)
Q Consensus 424 s~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~h~ 496 (1101)
+.... .. +...+...+.... ..+. .......+++.+ ++. ++++-..++.|+.+|..++.....+ . +..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 22 3333433322111 1111 234456789999 555 5666667788999998878763332 2 112
Q ss_pred cCeEEEeeeecCCcc-EEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEc--cCCce--EEeccccCceeEEEE--
Q 001318 497 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS--ADGTR--TYQGFRKRSLGVVQF-- 569 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~--~~~~~~~~~~~~~~~-- 569 (1101)
..-..++|+ +++. +.++-...+.|+.++.+....... .+..++-. ..|.. ......-.....+++
T Consensus 273 ~~~~~ia~d--pdG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 273 GSNFHIVWH--PTGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp SSCEEEEEC--TTSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCcccEEEe--CCCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 223357774 5556 445555568898887763211100 00011100 00000 000000112334666
Q ss_pred -------cCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCC----------------CCCcCeEEEc-cCCCEEEEEeC
Q 001318 570 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN 625 (1101)
Q Consensus 570 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~ 625 (1101)
.++++++++-...+.|+.++. +|.. .++.+... ......++++ ++|.++++-..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 556666666666778888885 5543 33322211 1234578898 56766666666
Q ss_pred CCcEEEEEec
Q 001318 626 DNGIKILATS 635 (1101)
Q Consensus 626 dg~i~iw~~~ 635 (1101)
++.|+.++++
T Consensus 423 n~rIr~i~~e 432 (433)
T 4hw6_A 423 NHRVRKIAPE 432 (433)
T ss_dssp GTEEEEEEEC
T ss_pred CCEEEEEecC
Confidence 7788887754
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=9.4e-05 Score=88.92 Aligned_cols=207 Identities=6% Similarity=-0.047 Sum_probs=127.1
Q ss_pred CCeeEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 806 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
..+..++|++.+..|+.+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3467899999888888776 57899999875 22222222222345678888645666665556789999998754
Q ss_pred eEeeeecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 880 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 880 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
.....+.........|++.|++.+|+.+.. . +.|.+.++...... .+.. ... .....|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~-~~l-----~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT-ENI-----QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence 433333322344678999987665555443 2 67777777653211 1111 111 245789999987666553
Q ss_pred --eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 958 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 958 --~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875433322221112234556677544 455566667899999999999887775
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.0089 Score=72.15 Aligned_cols=207 Identities=7% Similarity=-0.040 Sum_probs=129.5
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 878 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~ 878 (1101)
...+.+++|++.+..|+... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45578899999777777766 578999998752 223334334456788999984556666666778999999875
Q ss_pred ceEeeeecCcccCeeEEEEcCCCCEEEEEeC-C-CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEE
Q 001318 879 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 956 (1101)
Q Consensus 879 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 956 (1101)
......+........+|++.|.+.+|+.+.. . +.|.+.++++.... .++ .... .....|++++.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--~lv---~~~l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV---TENI---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--EEE---eCCC---CCceEEEEecCCCeEEE
Confidence 4333333333445789999998666665543 2 67888888764321 111 1111 24688999987777666
Q ss_pred E--eCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeec
Q 001318 957 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 957 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~ 1020 (1101)
+ ....|..+++............+.-....+|++..+ +++++-...+.|...|..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 4 566899999876544333322122334567777433 44445556678888888787665544
No 298
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.82 E-value=0.0044 Score=66.40 Aligned_cols=204 Identities=7% Similarity=-0.031 Sum_probs=129.8
Q ss_pred CeeEEEEecCCCEEEEEe--CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEee
Q 001318 807 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 883 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~ 883 (1101)
.+.+++|++.+..|.... .+.|..++........ .+.........+++.+.+++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 366889998777777776 5889999987653222 2222234567899997456666666667899999986432222
Q ss_pred eecCcccCeeEEEEcCCCCEEEEEeC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE--eC
Q 001318 884 KLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 959 (1101)
Q Consensus 884 ~l~~h~~~V~~l~~s~dg~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d 959 (1101)
.+........++++.|.+..|..+.. .+.|...+++..... .... .+. .....+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~l----~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--IIIN--SEI----YWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE--EEEE--CCC----CCccEEEEeccCCEEEEEECCC
Confidence 22233445689999987666665553 467777777653211 1111 111 244789999977766664 56
Q ss_pred CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecC
Q 001318 960 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 960 ~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~ 1021 (1101)
+.|..+|+..... ..+. .+.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~~-~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTNR-QAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCSC-EEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCce-EEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 7899999875332 2222 12245677888853 3455565567889999998887766554
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.70 E-value=0.009 Score=63.93 Aligned_cols=210 Identities=10% Similarity=-0.011 Sum_probs=122.4
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeE-E
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-G 423 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-a 423 (1101)
...+.+++|++.+..|+.+-...+.|..++..++..... ++...-.....+++.+.+..| +
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence 346778999997776777777788999999876532110 111122356789999855554 4
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEe-cCCCcEEEEeCCCCceEEEe-cCcccCeEE
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYS 501 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 501 (1101)
+-...+.|.+++.+...... .+.........+++.|.+.. ++++- +..+.|...++.. .....+ ...-..-+.
T Consensus 96 ~d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNG 170 (318)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccE
Confidence 44567889999988643221 12234456789999987765 33343 3457888888653 333333 223344577
Q ss_pred EeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEeC
Q 001318 502 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 581 (1101)
Q Consensus 502 v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 581 (1101)
+++++. ++.+.++-+..+.|..+|++.................+ ++. .+..+.+-..
T Consensus 171 lavd~~-~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gl---------------------av~-~~~lywtd~~ 227 (318)
T 3sov_A 171 LTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL---------------------TLF-EDILYWTDWS 227 (318)
T ss_dssp EEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEE---------------------EEE-TTEEEEEETT
T ss_pred EEEecc-CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEE---------------------EEe-CCEEEEEecC
Confidence 887543 33444555556788888887533222221112222222 232 1223444445
Q ss_pred CCcEEEEECCCCceeEEEc
Q 001318 582 DFSIKFWDMDSVQLLTSID 600 (1101)
Q Consensus 582 dg~i~iwd~~~~~~~~~~~ 600 (1101)
.+.|..++..+++....+.
T Consensus 228 ~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 228 THSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCCceEEEe
Confidence 6778888887776655554
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.68 E-value=0.0065 Score=64.17 Aligned_cols=189 Identities=12% Similarity=0.127 Sum_probs=117.9
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCcccCeeEEEEcCC----CC---EEE-EEeC--CCceEEEeCCCcccccceee
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRFL 929 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~---~l~-s~s~--D~~v~iwd~~~~~~~~~~~~ 929 (1101)
.+++.....+-+.+||+ +|+.++.+.. +.++.|..-|+ |+ +++ +.-. +++|++|+++..... +
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l 113 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L 113 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence 34555566789999999 8888888864 56777776653 22 223 3333 578999987532111 1
Q ss_pred ecCCCC--C--CCCCCCeEEEE--cCC-Cc-EEEE-EeCCeEEEEEc-------CCceeeeeccCCCCCCCeeEEEEcCC
Q 001318 930 QIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD 993 (1101)
Q Consensus 930 ~~~~~~--~--~~~~~v~~~~~--s~d-g~-~la~-~~d~~v~vwd~-------~~~~~~~~~~~~~h~~~i~~l~~spd 993 (1101)
...... . .....+..+|+ +|. ++ ++++ ..++.+..|++ .+.+.++.+.. ...+-.+.+.+.
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~ 190 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE 190 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence 111110 0 00135667777 774 54 4444 57899999988 34567777765 457889999998
Q ss_pred CCEEEEEEcCCeEEEEEcC-----CceeeeecCCCcccCCCCCCCCccceEEEEeCCCCC-EEEEEe-cCCcEEEEecc
Q 001318 994 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1065 (1101)
Q Consensus 994 g~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~-~l~s~~-~dg~v~vW~~~ 1065 (1101)
...|+.+-+|.-|..++.+ +++.+..+. .++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999777777755 455665543 12122225534444344 344 565555 67899999996
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.54 E-value=0.013 Score=61.30 Aligned_cols=205 Identities=11% Similarity=0.078 Sum_probs=125.1
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCceeeE-ecC----CC--CCeEEEEE---ecCCCcEEEEEec-----
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 867 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~----- 867 (1101)
.....+++|.+....+..++ .++|..||...+..... +.+ .. ..+..|.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 34456789988666676666 79999999976544333 222 11 13578999 68 6888886542
Q ss_pred --------cCeEEEEEee---cceEeeeec--Ccc-----------cCeeEEEEcCCCCEEEEEeCC-CceEEEeCCCcc
Q 001318 868 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 922 (1101)
Q Consensus 868 --------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~D-~~v~iwd~~~~~ 922 (1101)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999998 776654432 111 247899999999999998877 776666655431
Q ss_pred cccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCCeEEEEEcCCcee--eeeccCCC--CCCCeeEE-EEcCCCCE
Q 001318 923 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL 996 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~v~vwd~~~~~~--~~~~~~~~--h~~~i~~l-~~spdg~~ 996 (1101)
. ....+...... .......++++|+|+.|++. ..+.+..+|+.+... +..-.... .-.....| ..-.+|+.
T Consensus 171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 1 11111111111 11346799999999988883 588999999885332 21110000 11123333 33347777
Q ss_pred -EEEEEcCCeEEEEEcCC
Q 001318 997 -VYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 997 -l~s~s~dg~v~vwd~~~ 1013 (1101)
|++....+.+.+.+.+.
T Consensus 248 llV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEECSST
T ss_pred EEEEcCCCCEEEEECCCC
Confidence 55555566666655443
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.54 E-value=0.015 Score=63.24 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=119.1
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCce--eeEec---CCCCCeEEEEEecCC----CcEEEEEecc-----CeEE
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSIQ 872 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v~ 872 (1101)
....++|.|||+++++-.+|.|++++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 47899999999966665589999998 3332 22221 1245688999999 6 4444443332 6788
Q ss_pred EEEeecc-----e-Eeeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcccccc----
Q 001318 873 IYNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN---- 926 (1101)
Q Consensus 873 vwd~~~~-----~-~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~~~---- 926 (1101)
.|+...+ + .+..+. +.......++|.|||.+.++.+.. +.|.-++.+. .....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 8887643 1 222233 111123689999999877775432 3344444432 10000
Q ss_pred -----eeeecCCCCCCCCCCCeEEEEcC-CCcEEEE-EeCCeE------EEEEcCCcee------------------eee
Q 001318 927 -----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLEC------------------VKQ 975 (1101)
Q Consensus 927 -----~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~-~~d~~v------~vwd~~~~~~------------------~~~ 975 (1101)
.......++ .....++|+| +|.++++ ...+.+ .+.-+..+.. +..
T Consensus 188 ~~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 188 GRRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TCTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 000001111 1246789999 6776666 222221 2322222220 111
Q ss_pred ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeee-ecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 976 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 976 ~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
+ .+......++| .+|.++++....+.|...+++...... ......++.. .-.+..+++.| ||.+.++..
T Consensus 264 ~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 264 W---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp C---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEEC
T ss_pred c---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEEe
Confidence 1 11234667888 477777666666778877776443100 0000011110 12456889988 666666553
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.52 E-value=0.06 Score=58.49 Aligned_cols=228 Identities=12% Similarity=0.116 Sum_probs=124.6
Q ss_pred CCeeEEEEecCCCEEEEEeCCeEEEEECCCCc-eeeEec---CCCCCeEEEEEecC---CCcEEEEEec---c----CeE
Q 001318 806 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 871 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v 871 (1101)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.++++-.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3478999999998666655899999973 444 222221 12356889999993 2544444332 3 577
Q ss_pred EEEEeecc-------eE-eeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcccc---
Q 001318 872 QIYNVRVD-------EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ--- 924 (1101)
Q Consensus 872 ~vwd~~~~-------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~--- 924 (1101)
..|+.... +. +..+. .|. ...|+|.|||.+.++.+.. +.|.-++.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 77776543 11 12122 232 3679999999887775532 23443443321000
Q ss_pred --cceeeecCCCCCCCCCCCeEEEEcC-CCcEEEEE--eCC--eEEEEEcCCce------------------eeeeccCC
Q 001318 925 --KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLE------------------CVKQWVPR 979 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~--~v~vwd~~~~~------------------~~~~~~~~ 979 (1101)
..... ..++ .....++|+| +|.++++- .+. .|.+. ..+. .+..+. .
T Consensus 186 f~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~ 256 (354)
T 3a9g_A 186 FPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG-S 256 (354)
T ss_dssp STTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT-T
T ss_pred CCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC-C
Confidence 00011 1122 1357899999 67766662 222 23332 2221 111110 1
Q ss_pred CCCCCeeEEEEc-------CCCCEEEEEEcCCeEEEEEcCCc-eeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEE
Q 001318 980 ESSAPITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1051 (1101)
Q Consensus 980 ~h~~~i~~l~~s-------pdg~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~ 1051 (1101)
. ...+..++|. .+|.++++....+.|...++... +...... ++. + ..-.+..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEE
Confidence 1 3467888884 57777777767778888888753 3321111 111 1 113456899998 677666
Q ss_pred EEe
Q 001318 1052 LGL 1054 (1101)
Q Consensus 1052 s~~ 1054 (1101)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 304
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.52 E-value=0.037 Score=66.78 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=115.4
Q ss_pred CCCCeEEEEEecCCCeEEE-EEcCCeEEEEEccCCcee-eeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 406 PGVSVNRVIWSPDGSLFGV-AYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 406 h~~~V~~l~~spdg~~las-~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
....+..|+|.+.+..|.. -...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 3457889999996555554 455688999998753210 011123334456788999988876 5667777889999997
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
........+.........|++.+. .+.++++-... +.|...+++.......+.......
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P------------------- 560 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP------------------- 560 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE-------------------
T ss_pred CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc-------------------
Confidence 755443333334445777887543 23344443222 667777765433222222222233
Q ss_pred ceeEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 563 SLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
..+++++.+..|+.+. ..+.|...++........+...........|++.. ++++++-...+.|...+..++
T Consensus 561 --~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 561 --NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp --EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 3455554444555553 45678888886554444443322222334555532 234444445677887877666
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.43 E-value=0.15 Score=52.65 Aligned_cols=248 Identities=8% Similarity=0.079 Sum_probs=152.6
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
+.-.+|..+ ++|.-. ..++.|+|+++.+++....+ ...|..=.|-.+.. |+-.+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~~-L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSSE-EEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCCe-EEEEc-CC
Confidence 445588887 465544 57899999999988875332 23566666654443 33333 46
Q ss_pred eEEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEecCcccCe
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.|.-|+++......+. +..| ...|..-..+++.+. ++++|- -.|.+.+|..+. +.-+.++||....
T Consensus 127 aVyHWs~~~~s~P~kv--FdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVKM--FDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEEE--EECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred cEEEEcccCCCCCcee--eecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeecc-cccceeeeeeeee
Confidence 7999999864433332 3333 235777777888886 333332 246788998554 4456788887665
Q ss_pred EEEeeeecCCc-cEEEEEec---CCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 500 YSVCPHHKENI-QFIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 500 ~~v~~~~~~~~-~~l~s~~~---dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
..+.+...+.. .++..+.. .+.+++-++... ... ..-......+-|.|+.. ..-.-.+.+++.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCC
Confidence 54443222211 23333322 257888887543 111 11122344555555433 22344566777777
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++....-|.|++||++++.++..-+.... .|...+.+.+..-++.....|.|.-..+...
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 888999999999999999999988775544 4544455455455666668888887777665
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.36 E-value=0.18 Score=52.07 Aligned_cols=234 Identities=15% Similarity=0.136 Sum_probs=151.2
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecC
Q 001318 809 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKG 887 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~ 887 (1101)
.+.-++|..+.+|.-...++.+||+++.+.++.+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+.+.++.
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 456678999988887888999999999888877663 34677777764 45666554 568999999753 44555554
Q ss_pred cc----cCeeEEEEcCCCCEEEEEeC-------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC----c
Q 001318 888 HS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ----I 952 (1101)
Q Consensus 888 h~----~~V~~l~~s~dg~~l~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~ 952 (1101)
|. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+| .
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 43 45667777889998876543 3678899887743 344555432 112232222 2
Q ss_pred EEEE-EeC----CeEEEEEcCCc---e------eeee-ccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceee
Q 001318 953 HFLV-VHE----TQLAIFETTKL---E------CVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1017 (1101)
Q Consensus 953 ~la~-~~d----~~v~vwd~~~~---~------~~~~-~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~ 1017 (1101)
.|.+ +.. ++++|.++... . .+.. +.++.-.+-.-++.+|+.-..+..-+.-|.|++||++||.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 2333 322 58889888432 1 1111 222233556778888988888888999999999999999999
Q ss_pred eecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1018 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
.+-+.+ ...++ ..+.... ..=++.....|.|.--.+.+..
T Consensus 295 ~~nrIS--------~d~iF--~ta~~~~-~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 295 YMNRIS--------GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEECC--------SSCEE--EEEEEGG-GTEEEEEETTCEEEEEEECTTT
T ss_pred EEeccC--------CCceE--EecccCC-CCcEEEEcCCCEEEEEEECccc
Confidence 876521 12244 2233332 2335555688888877776655
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.36 E-value=0.054 Score=58.86 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=126.9
Q ss_pred CeeEEEEecCCC-EEEEEeCCeEEEEECCCCcee---eEe----cCCCCCeEEEEEecC---CCcEEEEEec-------c
Q 001318 807 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D 868 (1101)
Q Consensus 807 ~i~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d 868 (1101)
....|+|.|+|+ ++++-..|.|++++.. +... ..+ .........++|+|+ ++.+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 468999999999 6655558999999853 3221 111 112345789999993 3444444332 2
Q ss_pred CeEEEEEeecc-------eE-eeeec-----CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCcc
Q 001318 869 SSIQIYNVRVD-------EV-KSKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE 922 (1101)
Q Consensus 869 g~v~vwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~ 922 (1101)
..|..|++..+ +. +..+. .|. -..|+|.|||.+.++.+.. +.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 11 11221 132 3579999999777765442 345555544310
Q ss_pred cc----------cceeeecCCCCCCCCCCCeEEEEcC-CCcEEEEE--eCCeEEEEEcCCceeee---------------
Q 001318 923 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECVK--------------- 974 (1101)
Q Consensus 923 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~v~vwd~~~~~~~~--------------- 974 (1101)
.. ..... ..++ .....++|+| +|++.++- .++.=.|.-+..+....
T Consensus 176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 00000 1121 1357899999 67666662 22222333222221100
Q ss_pred ---------eccCC----CCCCCeeEEEEcC-------CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCC
Q 001318 975 ---------QWVPR----ESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1034 (1101)
Q Consensus 975 ---------~~~~~----~h~~~i~~l~~sp-------dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
.+... .+...+..++|.. +|.++++....+.|...+++.++...... ++. + ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CC
Confidence 00000 1123567788864 57777777777888888887765443322 111 0 11
Q ss_pred ccceEEEEeCCCCCEEEEEecCCcEEEEecc
Q 001318 1035 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1065 (1101)
Q Consensus 1035 v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~ 1065 (1101)
..+..+++.| ||.+.++.. ++.=+||++.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 2466899999 677655433 2223566653
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.35 E-value=0.24 Score=53.29 Aligned_cols=248 Identities=8% Similarity=0.079 Sum_probs=152.8
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
+.-.+|..+ ++|.=. ..++.|+|+++.+.+....+ ...|..=.|-.+.. |+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETTE-EEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCCe-EEEEc-CC
Confidence 455678777 455444 57999999999988875332 22455555554443 33332 46
Q ss_pred eEEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEecCcccCe
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.|.-|+++......+. +..| ...|..-..+++.+. ++++|= -.|.+.+|..+.+ .-+.++||.+..
T Consensus 126 aVyHWsi~~~s~P~kv--FdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVKM--FDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEEE--EECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchhh--eecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 7999999864433332 3333 235777777889986 333332 3467889986554 456788887766
Q ss_pred EEEeeeecCCc-cEEEEEecC---CcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 500 YSVCPHHKENI-QFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 500 ~~v~~~~~~~~-~~l~s~~~d---g~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
..+.+...... .++..+... +.+++-++... ... ..-......+-|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 55543222211 233333332 67888887543 111 11122244445555433 22344567777778
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.++....-|.|++||++++.++..-+.... .|...+......-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 889999999999999999999988775544 4544555555556666668888887777665
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.34 E-value=0.0025 Score=76.50 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=108.8
Q ss_pred CCeEEEEEecCCCeEEEEE-cCCeEEEEEccCC---ceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeC
Q 001318 408 VSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 483 (1101)
Q Consensus 408 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~---~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~ 483 (1101)
..+..|+|++++..|..+. ..+.|+.+++.+. ..... .+.........|++.+.++. ++++-...+.|.+.++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 4567899999777776654 4578999998751 11111 12112234567888866554 4556566788999997
Q ss_pred CCCceEEEecCcccCeEEEeeeecCCccEEEEEecC-CcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccC
Q 001318 484 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 562 (1101)
Q Consensus 484 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~ 562 (1101)
........+.........+++.+. .+.++++-... +.|..++++................
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~-~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn------------------ 543 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN------------------ 543 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSS-SSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC------------------
T ss_pred CCCceEEEEeCCCCCcceEEEccC-CCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc------------------
Confidence 655443333322233455666432 22333333222 5666665543222111111112223
Q ss_pred ceeEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecCc
Q 001318 563 SLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 637 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 637 (1101)
.+++++++..|+ +-...+.|..+++........+...........+++..+ .++++....+.|..++..++
T Consensus 544 ---Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 544 ---GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ---CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred ---EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 355555433344 444567899999865433333322122223455676554 44555556788999988777
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.22 E-value=0.34 Score=52.44 Aligned_cols=108 Identities=18% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCe
Q 001318 345 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 421 (1101)
Q Consensus 345 ~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 421 (1101)
-...+.++|.|||+ |++ +..+|.|.+++ .+++ .....+. +..........|+|+|| +.+
T Consensus 28 l~~P~~ia~~pdG~-l~V-~e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLV-TERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEE-EETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEE-EeCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence 45678999999998 344 46669999997 3443 1100110 11222356889999998 555
Q ss_pred EEEEEc----C----CeEEEEEccCC--ce--eeee-eeec-cccCCeeEEEEcCCCCeEEEEEe
Q 001318 422 FGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 422 las~~~----d----~~i~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
|.++.. + ..|..|+...+ .. .+.+ ..+. +.......|+|.|||. ++++.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 555433 3 56778887654 11 1111 1121 1112346799999997 45543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.21 E-value=0.34 Score=52.19 Aligned_cols=267 Identities=8% Similarity=0.071 Sum_probs=157.2
Q ss_pred CCCcceeeeccccCCCccccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCCCCceeeeecCcccc
Q 001318 709 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 788 (1101)
Q Consensus 709 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~lw~ 788 (1101)
.+..+.+-|+.+.....+ ..-...+...+|..+.++.- ....+.|+|+...
T Consensus 46 ~~~~vvIiDl~~~~~~~r----------rpi~AdsAIMnP~~~iiALr-ag~~lQiFnle~K------------------ 96 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIR----------RPISADSAIMNPASKVIALK-AGKTLQIFNIEMK------------------ 96 (494)
T ss_dssp TCCEEEEEETTSTTSCEE----------EECCCSEEEECSSSSCEEEE-ETTEEEEEETTTT------------------
T ss_pred CCCeEEEEECCCCCccee----------cccccceeeeCCCCcEEEEe-cCCeEEEEchHHh------------------
Confidence 334788888876443311 12233456677877755544 4778888887432
Q ss_pred CCCccccccccCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEECCC-CceeeEecCC----CCCeEEEEEecCCCcEEE
Q 001318 789 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP----PPAATFLAFHPQDNNIIA 863 (1101)
Q Consensus 789 ~~~g~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~----~~~i~~l~~sp~d~~~la 863 (1101)
..+.... ....|.-=.|- +.+.|+..++..|+-|++.. ....+.|..| ...|..-..++ +.++++
T Consensus 97 ----~klks~~----~~e~VvfWkWi-s~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~ 166 (494)
T 1bpo_A 97 ----SKMKAHT----MTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLL 166 (494)
T ss_dssp ----EEEEEEE----CSSCCCEEEEE-ETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEE
T ss_pred ----hhhccee----cCCCceEEEec-CCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEE
Confidence 1111000 12233333332 23467777788999999974 3455556544 34677778888 777777
Q ss_pred EEe-------ccCeEEEEEeecceEeeeecCcccCeeEEEEcCC---CCEEEEEeCC---CceEEEeCCCc----ccccc
Q 001318 864 IGM-------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA---LNVLVSSGAD---SQLCVWSSDGW----EKQKN 926 (1101)
Q Consensus 864 sg~-------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d---g~~l~s~s~D---~~v~iwd~~~~----~~~~~ 926 (1101)
..+ -.|.+.+|+.+. +.-+.++||.+.-..+.+..+ ...++.+... +++.|-++... .....
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 544 347889999775 445778888765554444321 1244444432 68999998543 11111
Q ss_pred eeeecCCCCCCCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCe
Q 001318 927 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1005 (1101)
Q Consensus 927 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~ 1005 (1101)
+...++-.+....+-..++..|+.-..+.. ..-|.+++||+.++.++..-.. ....|...+......=++.....|.
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc--cCCceEEecccCCCCcEEEEccCce
Confidence 122222222222234567777776665555 7899999999999999876543 2456666665555445555667887
Q ss_pred EEEEEcCCceee
Q 001318 1006 VCVFSAANLKLR 1017 (1101)
Q Consensus 1006 v~vwd~~~~~~~ 1017 (1101)
|.--.++...++
T Consensus 324 Vl~v~v~e~~iv 335 (494)
T 1bpo_A 324 VLSVCVEEENII 335 (494)
T ss_dssp EEEEEECTTTHH
T ss_pred EEEEEEccccch
Confidence 777776665543
No 312
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.21 E-value=0.0097 Score=62.29 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=105.2
Q ss_pred eEEEEcCC-CCEEEEEeCCCceEEEeCCCcccccceeeecCCCC---CCCCCCCeEEEE---cCCCcEEEEEe-------
Q 001318 893 TGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQF---HQDQIHFLVVH------- 958 (1101)
Q Consensus 893 ~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~---s~dg~~la~~~------- 958 (1101)
-++.|.+. +.++++.-..++|..|+...+.... . ...+. ......+..+.+ .|+|+++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~---~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN---V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE---E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE---E-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 46788764 5555555578999999997543221 1 12211 011123578999 68988888643
Q ss_pred -------CCeEEEEEcC---CceeeeeccCCCC-----------CCCeeEEEEcCCCCEEEEEEcC-CeEEEEEcCCcee
Q 001318 959 -------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKL 1016 (1101)
Q Consensus 959 -------d~~v~vwd~~---~~~~~~~~~~~~h-----------~~~i~~l~~spdg~~l~s~s~d-g~v~vwd~~~~~~ 1016 (1101)
+..|..||+. +++.+......+. ......+++.++|+..++++.- +.|...+.+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5789999999 7776644432111 1348899999999999999888 887777765442
Q ss_pred eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccC
Q 001318 1017 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~ 1066 (1101)
+..+-.. .+.... ..-+..|+++| |+++|++...+|.|..+|+.+
T Consensus 171 ~~~~~~~--~~~~~~--~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWE--SGNGGQ--RPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEC--CCCSSS--CCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred Eeeeeec--CCCccc--ccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 2221100 111111 12234899999 678877777799999999873
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.06 Score=57.30 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=118.9
Q ss_pred EEEEEe---CCeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc----CeEEEEEeecce--EeeeecC
Q 001318 819 YVMSAS---GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLKG 887 (1101)
Q Consensus 819 ~la~~s---dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~--~~~~l~~ 887 (1101)
+++.|+ ...+.+||..+.+-... +........++. - ++++++.|+.+ ..+.+||..+.+ .+..+..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 444554 25799999987553322 221111222222 3 67788888765 578899987754 3333322
Q ss_pred cccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e--
Q 001318 888 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-- 958 (1101)
Q Consensus 888 h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-- 958 (1101)
....-..+.+ ++++++.||.+ ..+.+||..+.+-.... ...... .-.+++. -+++.++.+ .
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLTQR-----CSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEE-ETTEEEEECCEES
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcCCc-----ceeEEEE-ECCEEEEECCCCC
Confidence 1111222222 67788888865 45888998875422111 111111 1122222 366666653 2
Q ss_pred -------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCccc
Q 001318 959 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1026 (1101)
Q Consensus 959 -------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1026 (1101)
-..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-...- .+
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence 3458899998876543322111 111122222 267777777654 35899999887654321 12
Q ss_pred CCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1027 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1027 ~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
+...... +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 235 p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 235 PWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp SCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2221111 23333 46788888865 468888887765
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.18 E-value=0.13 Score=55.92 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 420 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 420 (1101)
.-...+.++|.|||+ ++++ ..+|.|.+++ +++......+. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence 345678999999998 3444 5669999998 44321110000 12222457889999998 56
Q ss_pred eEEEEEc-C-----CeEEEEEccCCcee--eeee-eec---cccCCeeEEEEcCCCCeEEEEEe
Q 001318 421 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 421 ~las~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
+|.++.. + +.|..|+...+... +... .+. +.......++|.|||. ++++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 6655443 2 67888887754211 1111 122 1112346899999996 44543
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.06 E-value=0.058 Score=57.26 Aligned_cols=219 Identities=9% Similarity=0.052 Sum_probs=114.4
Q ss_pred CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeecce-----EeeeecCcccCeeEE
Q 001318 826 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRITGL 895 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~~l 895 (1101)
..+.+||..+.+-...-..........+... ++++++.|+.+ ..+.+||..+.+ .+..+......-..+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3588999887543221111111111222223 67788888765 368899987644 333332222222222
Q ss_pred EEcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eC-----CeEEE
Q 001318 896 AFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQLAI 964 (1101)
Q Consensus 896 ~~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----~~v~v 964 (1101)
.+ +++.++.||.++ .+.+||+.+.+-.... ...... .-..++. -+++.++.+ .+ ..+.+
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQTAR-----EGAGLVV-ASGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSSCC-----BSCEEEE-ETTEEEEECCBCSSCBCCCEEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCCCc-----ccceEEE-ECCEEEEECCCCCCcccceEEE
Confidence 22 677778877543 4788888775422211 111111 1122222 266666663 32 46899
Q ss_pred EEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceE
Q 001318 965 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1039 (1101)
Q Consensus 965 wd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1039 (1101)
||+.+.+-...-.... ...-.+++ .-++++++.|+.+ ..|.+||+.+.+....-. ++...... +
T Consensus 180 ~d~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~-----~ 248 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMAT-KRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCYV-----G 248 (301)
T ss_dssp EETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC-----E
T ss_pred EeCCCCcEEeCCCCCc-ccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccce-----e
Confidence 9998876544322111 11111222 2267777878764 468999999887653321 22221111 2
Q ss_pred EEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1040 IAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1040 i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
+... ++++++.|+.+ ..+.++|+.+.+
T Consensus 249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 249 ATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2232 46788888776 357788887654
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.96 E-value=0.098 Score=55.49 Aligned_cols=220 Identities=13% Similarity=0.111 Sum_probs=114.7
Q ss_pred CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecce--EeeeecCcccCeeEEE
Q 001318 826 GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLA 896 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~--~~~~l~~h~~~V~~l~ 896 (1101)
..+..||..+.+-... +......- +++ .- ++++++.|+.++ .+.+||..+.+ .+..+......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRA-GMV-YM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSC-EEE-EE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccc-eEE-EE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 4588999887543222 11111111 222 22 677888887553 58889987654 2332222111122222
Q ss_pred EcCCCCEEEEEeCCC-----ceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-------CCeEE
Q 001318 897 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-------ETQLA 963 (1101)
Q Consensus 897 ~s~dg~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-------d~~v~ 963 (1101)
+ +++.++.||.++ .+.+||+.+.+-..... ..... .-.+++. -+++.++.+ . -..+.
T Consensus 107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP--MNTRR-----SSVGVGV-VGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC--CSSCC-----BSCEEEE-ETTEEEEECCEETTTTEECCCEE
T ss_pred E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC--CCCcc-----cCceEEE-ECCEEEEEeCCCCCCCccccEEE
Confidence 2 677888887654 47788887654221111 11111 1122222 256666653 2 24588
Q ss_pred EEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeeeecCCCcccCCCCCCCCccce
Q 001318 964 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 964 vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
+||+.+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+++....-. ++......
T Consensus 177 ~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~r~~~----- 245 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMCRRNA----- 245 (302)
T ss_dssp EEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC-----
T ss_pred EEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCccccC-----
Confidence 99998876544322111 11111222 22678888887653 68999998876553221 22211111
Q ss_pred EEEEeCCCCCEEEEEecCC-----cEEEEeccCCCccccC
Q 001318 1039 VIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1073 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~dg-----~v~vW~~~~~~~~~~~ 1073 (1101)
+++.. ++++++.|+.++ .+.++|+.+.+ |..
T Consensus 246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 23332 467888888764 48889888755 544
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.94 E-value=0.052 Score=58.48 Aligned_cols=109 Identities=11% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCC----CCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE----
Q 001318 810 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---- 881 (1101)
Q Consensus 810 ~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---- 881 (1101)
......+|.-++++.++.||.-++......+.++.. -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345678889999999999999998855555555433 23688999999 999999886 45888888873210
Q ss_pred --------eeeecC------cccCeeEEEEcCC---CCEEEEEeCCCceEEEeCCC
Q 001318 882 --------KSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 882 --------~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~D~~v~iwd~~~ 920 (1101)
...+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 111111 2567999999985 56899999999999999986
No 318
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.86 E-value=0.4 Score=53.87 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=63.1
Q ss_pred CCeeEEEEecCCCEEEEEeC-CeEEEEECCCCcee--eEecC------CCCCeEEEEEecC---CCcEEEEEec------
Q 001318 806 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------ 867 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------ 867 (1101)
.....++|.|+|+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47998887655432 22321 2456779999994 3444443332
Q ss_pred ------cCeEEEEEeecc-------eEe-eeecC-cccCeeEEEEcCCCCEEEEEeC
Q 001318 868 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA 909 (1101)
Q Consensus 868 ------dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~ 909 (1101)
...|.-|++..+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665421 111 11221 1123688999999998887664
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.82 E-value=0.096 Score=55.49 Aligned_cols=188 Identities=9% Similarity=0.040 Sum_probs=99.6
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCc---eeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeec
Q 001318 815 KNDSYVMSAS-G-----GKISLFNMMTFK---TMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV 878 (1101)
Q Consensus 815 ~dg~~la~~s-d-----g~i~vwd~~~~~---~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~ 878 (1101)
.+++.++.|+ + ..+.+||..+.+ -... +........+ +. . ++++++.|+.++ .+.+||..+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~-~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA-TT-L-GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE-EE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE-EE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence 4566666665 3 359999988765 2222 2211111222 22 2 677888887543 688899876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||+.+.+-.... ...... .-..++ .-++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~-~~~~ 207 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT--PMATKR-----SGAGVA-LLND 207 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEE-EETT
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC--CCCccc-----ccceEE-EECC
Confidence 43 33333221111122222 67788888765 35888998775422111 111111 111222 2256
Q ss_pred cEEEEE-e-----CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 952 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 952 ~~la~~-~-----d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
+.++.+ . ...+.+||+.+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+..
T Consensus 208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 666663 3 2479999998876544322111111112222 277787878765 35888998877654
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.82 E-value=0.2 Score=53.21 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=119.0
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEec----c-----CeEEEEEeec
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 878 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~ 878 (1101)
-++..++.|+ + ..+.+||..+.+-... +....... +++. - ++++++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 4556666665 2 4689999887553322 11111111 2222 2 6778888776 2 3688889876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||..+.+-..... ..... ..-..+.+ ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r----~~~~~~~~--~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR----IGVGVAVL--NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC----BSCEEEEE--TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc----cceEEEEE--CC
Confidence 54 22222221112222233 67777777754 358888887754221111 11111 11122222 56
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeec
Q 001318 952 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1020 (1101)
Q Consensus 952 ~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~ 1020 (1101)
+.++.+ .+ ..+.+||+.+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+....-
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666663 32 4689999988765433221111111122222 77787878765 45999999887655321
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001318 1021 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1068 (1101)
Q Consensus 1021 ~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d-----g~v~vW~~~~~~ 1068 (1101)
. ++...... +++.. ++++++.|+.+ ..+.++|+.+.+
T Consensus 248 ~----~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 248 P----MKHRRSAL-----GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C----CSSCCBSC-----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C----CCCCccce-----EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 22221111 23333 46788888765 357788887755
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.78 E-value=0.66 Score=49.47 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=122.5
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eEe----cCCCCCeEEEEEecC---CCcEEEEEe--ccCeEE
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIGM--DDSSIQ 872 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---d~~~lasg~--~dg~v~ 872 (1101)
-.....++|.|||+++++-. .|.|++++..+++.. ..+ .........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999888887 799999987655432 212 122456789999993 244443322 345566
Q ss_pred EEEeecc----------eE-eeeec---CcccCeeEEEEcCCCCEEEEEeCC-------------CceEEEeCCCccccc
Q 001318 873 IYNVRVD----------EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQK 925 (1101)
Q Consensus 873 vwd~~~~----------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~D-------------~~v~iwd~~~~~~~~ 925 (1101)
-|.+..+ +. +..+. .|. -..|+|.|||.+.++.+.. +.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 6655431 11 11221 243 3579999999888886532 333333333210000
Q ss_pred c---eeeecCCCCCCCCCCCeEEEEcCCCcEEEE--EeCCeEEEEEcCCceee------------------eeccCCCCC
Q 001318 926 N---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECV------------------KQWVPRESS 982 (1101)
Q Consensus 926 ~---~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~v~vwd~~~~~~~------------------~~~~~~~h~ 982 (1101)
. .......|+. ....++|+|+|.+.++ +.++.-.|.-+..+... ..|. .+.
T Consensus 189 nPf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~ 262 (347)
T 3das_A 189 NPFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDE 262 (347)
T ss_dssp CSSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTT
T ss_pred CCCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCC
Confidence 0 0001111221 3578999999887777 34443333333333211 1110 111
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEe
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1054 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~ 1054 (1101)
.....++|. +|.+++..-..+.|....+..+..+.. ...++. + ..-++..|+..| ||.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e~~l~-~---~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQAFLE-G---EYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CEEEST-T---TSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecc--eEEeec-C---CCCCccEEEECC-CCcEEEEEc
Confidence 355677776 466666555556666666655432211 011111 1 112344788877 566555443
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.76 E-value=0.33 Score=51.68 Aligned_cols=220 Identities=11% Similarity=0.114 Sum_probs=114.5
Q ss_pred CCeEEEEECCCCceee-EecCCCCCeEEEEEecCCCcEEEEEec----c-------CeEEEEEeecceE--eeeecCccc
Q 001318 825 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----D-------SSIQIYNVRVDEV--KSKLKGHSK 890 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----d-------g~v~vwd~~~~~~--~~~l~~h~~ 890 (1101)
...+..||..+.+-.. .+..........+... ++++++.|+. + ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3679999998866432 2222223333334444 7788888874 1 1377888876542 222221111
Q ss_pred CeeEEEEcCCCCEEEEEeCC--------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-C-
Q 001318 891 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 959 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d- 959 (1101)
.-..+.+ +++.++.||.+ ..+.+||..+.+-.... ...... .-.+++ .-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~~-~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPYVV-----YGHTVL-SHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSSCC-----BSCEEE-EETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCCcc-----cceeEE-EECCEEEEEeCCCCC
Confidence 1122222 66777777743 35888898875421111 111111 112222 2456666664 3 2
Q ss_pred ----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceeeeecCCCcccCCCC
Q 001318 960 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1030 (1101)
Q Consensus 960 ----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 469999998876543322111 11111222 22778888887654 58899998876554321 22221
Q ss_pred CCCCccceEEEEeCCCCCEEEEEecCC--------------cEEEEeccCCC
Q 001318 1031 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESE 1068 (1101)
Q Consensus 1031 ~~~~v~~~~i~~~~~d~~~l~s~~~dg--------------~v~vW~~~~~~ 1068 (1101)
... +++.. ++++++.|+.++ .+.++|+.+.+
T Consensus 235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111 23333 457888887643 36677777654
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.60 E-value=0.27 Score=52.69 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=107.3
Q ss_pred CCeEEEEEecCCCcEEEEE------------eccCeEEEEEeec--ceEe-eeecC-----cccCeeEEEEcC--CCC-E
Q 001318 847 PAATFLAFHPQDNNIIAIG------------MDDSSIQIYNVRV--DEVK-SKLKG-----HSKRITGLAFSH--ALN-V 903 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg------------~~dg~v~vwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--dg~-~ 903 (1101)
...-.+++.| +|..++++ ..+|.|.++|..+ .+.. -.+.+ .......+.+.+ +|. +
T Consensus 50 ~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455666777 66555443 2689999999873 2211 11222 233566777755 453 3
Q ss_pred EEEE-eC--CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEe----C--------------CeE
Q 001318 904 LVSS-GA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----E--------------TQL 962 (1101)
Q Consensus 904 l~s~-s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d--------------~~v 962 (1101)
|+.+ .. +.+|.+|+++..... ...+....+.. ......+++.++|.+.++.. | +.|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~--~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKL--LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTT--CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCC--CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 4443 22 567888888764322 22333333332 24678999999999887742 1 344
Q ss_pred EEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE-cCCeEEEEEcC-Cceeee--ecCCCcccCCCCCCCCccce
Q 001318 963 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAA-NLKLRC--RINPSAYLPAGVSSSNVHPL 1038 (1101)
Q Consensus 963 ~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s-~dg~v~vwd~~-~~~~~~--~~~~~~~~~~~~~~~~v~~~ 1038 (1101)
.-+|. ++..... ..-...+.++||||++.|+.+. ..+.|..|++. ++++.. .+. .+ -.|=
T Consensus 206 yr~d~--~~~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~----~~-------g~PD 269 (355)
T 3sre_A 206 TYYSP--NDVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS----FD-------TLVD 269 (355)
T ss_dssp EEECT--TCCEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE----CS-------SEEE
T ss_pred EEEEC--CeEEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe----CC-------CCCc
Confidence 44554 3222111 1134678999999998876655 56789999986 343322 221 11 1222
Q ss_pred EEEEeCCCCCEEEEEecC
Q 001318 1039 VIAAHPQEPNEFALGLSD 1056 (1101)
Q Consensus 1039 ~i~~~~~d~~~l~s~~~d 1056 (1101)
.++..+++|++.+++..+
T Consensus 270 Gi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 270 NISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEECTTTCCEEEEEESC
T ss_pred eEEEeCCCCcEEEEecCC
Confidence 577776347777766544
No 324
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.52 E-value=0.16 Score=53.82 Aligned_cols=190 Identities=11% Similarity=0.107 Sum_probs=100.9
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc------CeEEEEEeecce--E
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--V 881 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~ 881 (1101)
-+++.++.|+ + ..+.+||..+.+-...-..........+..- ++++++.|+.+ ..+.+||..+.+ .
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3666666665 3 5689999987654332221112111122223 67788888765 468899987754 2
Q ss_pred eeeecCcccCeeEEEEcCCCCEEEEEeC---------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCc
Q 001318 882 KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 952 (1101)
Q Consensus 882 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 952 (1101)
+..+......-..+. -++++++.||. -..+.+||+.+.+-.... ...... .-..++.. +++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~~-~~~ 202 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC--PMIEAR-----KNHGLVFV-KDK 202 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEEE-TTE
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC--Cccchh-----hcceEEEE-CCE
Confidence 222221111112222 26777777764 244788998875422111 111111 11222222 666
Q ss_pred EEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 953 HFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 953 ~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
.++.+ .+ ..+.+||+.+.+-...-..........++.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 66663 22 4689999988765433221111112223333 77888888754 46899999887654
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.30 E-value=0.044 Score=59.04 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=79.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEe-------eeeeeeecCCCCcccccccccCCCCCeEEEEEec-
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 417 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 417 (1101)
+.|..+..||+|++|.+.| +..|.|-.+..+..... ...+.|.++. .......+|..+-|+|
T Consensus 66 ~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 3789999999999644443 36899988874432211 0112222211 0112467899999999
Q ss_pred --CCCeEEEEEcCCeEEEEEccCCceeee-------eeeeccccCCeeEEEEcCCCCeEEEEEecCCCcEEEE
Q 001318 418 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 481 (1101)
Q Consensus 418 --dg~~las~~~d~~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iw 481 (1101)
.|..|++-..|++|++||+........ .+.+..+...|.+++|..++-.+++++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 567899999999999999986321111 0112223356888888887766666666666666443
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.21 E-value=0.39 Score=52.17 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCCEEEEEe--CCeEEEEECCC--Cc--eeeEec-CCCCCeEEEEEecCCCcEEEEEec-c---------CeEEEEEeec
Q 001318 816 NDSYVMSAS--GGKISLFNMMT--FK--TMATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV 878 (1101)
Q Consensus 816 dg~~la~~s--dg~i~vwd~~~--~~--~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~ 878 (1101)
++++++.|+ ...+.+||..+ .+ .+..+. ...... +++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667777776 46799999864 22 222222 111112 2222 2 6778888876 2 4688999877
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC---------------------------------------CceEEEe
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD---------------------------------------SQLCVWS 917 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D---------------------------------------~~v~iwd 917 (1101)
.+ .+..+. ........+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 54 222222 01111111222577888888865 4688888
Q ss_pred CCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e------CCeEEEEEc--CCceeeeeccCCCCCCCeeEE
Q 001318 918 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H------ETQLAIFET--TKLECVKQWVPRESSAPITHA 988 (1101)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~------d~~v~vwd~--~~~~~~~~~~~~~h~~~i~~l 988 (1101)
..+.+-.... ...... ..-.+++. -+++.++.+ . ...+.+||+ .+.+-...-..........+.
T Consensus 175 ~~~~~W~~~~--~~p~~~----~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSYAG--ESPWYG----TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEEEE--ECSSCC----CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEECC--CCCCCC----cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 8775422211 111110 01022222 255555553 2 235777876 444433221111111111222
Q ss_pred EEcCCCCEEEEEEcC----------------------CeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 989 TFSCDSQLVYACFLD----------------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 989 ~~spdg~~l~s~s~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
+...++++++.|+.+ ..+.+||+.+.+....- .++...... ++... +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~-----~~~~~--~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQGRAYG-----VSLPW--N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSCCBSS-----EEEEE--T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCCcccc-----eeEEe--C
Confidence 233467777777632 25788999877544321 122221111 22222 4
Q ss_pred CCEEEEEecCC------cEEEEeccCCC
Q 001318 1047 PNEFALGLSDG------GVHVFEPLESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~dg------~v~vW~~~~~~ 1068 (1101)
+++++.|+.++ .|.+.++.+++
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 68888898764 34555776655
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.19 E-value=0.87 Score=49.22 Aligned_cols=113 Identities=13% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CCeE
Q 001318 346 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF 422 (1101)
Q Consensus 346 ~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l 422 (1101)
...+.|+|.|+|++|+ ++...|.|++++.. ++... .+. ++ . .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~--~~~--~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSA--PLS--GV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECC--CCB--SC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-Cceee--Eec--CC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 4678999999998534 44567999999853 32110 000 00 0 012223456789999996 5555
Q ss_pred EEEE-c-------CCeEEEEEccCCc----eeeeee-eec---cccCCeeEEEEcCCCCeEEEEEec
Q 001318 423 GVAY-S-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 423 as~~-~-------d~~i~iwd~~~~~----~~~~~~-~l~---~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
..+. . ...|..|++..+. ..+.+. .+. .....-..|+|.|||. +++.+|.
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd 149 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE 149 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence 5443 2 2356667665431 111111 111 1111246799999995 3444433
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.05 E-value=0.35 Score=51.89 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=94.2
Q ss_pred CeEEEEEecCCCeEEEEE------------cCCeEEEEEccCCc-eeeeeeeecc-----ccCCeeEEEEcC--CCCeEE
Q 001318 409 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGD-EVRQHLEIDA-----HVGGVNDIAFSH--PNKQLC 468 (1101)
Q Consensus 409 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~-~~~~~~~l~~-----h~~~V~~~~~s~--d~~~~~ 468 (1101)
..-.++..|+|..+++++ .+|.|.++|.++.. ..... .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445667788876655542 68999999998431 12222 2332 234567777765 454213
Q ss_pred EEEecC--CCcEEEEeCCCCce----EEEecCc-ccCeEEEeeeecCCccEEEEEec---C--------------CcEEE
Q 001318 469 VITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIKA 524 (1101)
Q Consensus 469 l~s~~~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~---d--------------g~i~~ 524 (1101)
++.-.. +.+|.+|++..+.. +.++.+. -...+.+.+. ++|.+.++... | |.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 56788888765422 2334332 2345666653 45555555431 1 22222
Q ss_pred EecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--eEEEc
Q 001318 525 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSID 600 (1101)
Q Consensus 525 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~ 600 (1101)
+|. .+ . ..+ ...-...+.++|+||++.++.+. ..+.|+.|++.. ++. ...+.
T Consensus 208 ~d~--~~-~--------------------~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~ 263 (355)
T 3sre_A 208 YSP--ND-V--------------------RVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 263 (355)
T ss_dssp ECT--TC-C--------------------EEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred EEC--Ce-E--------------------EEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe
Confidence 221 11 0 100 01112344567777776666654 578899999863 332 12232
Q ss_pred CCCCCCCcCeEEEcc-CCCEEEEEe
Q 001318 601 ADGGLPASPRIRFNK-DGCLLAVST 624 (1101)
Q Consensus 601 ~~~~~~~v~~~~~s~-~~~~l~~~~ 624 (1101)
. ....-.+++.+ +|++.+++.
T Consensus 264 ~---~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 F---DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp C---SSEEEEEEECTTTCCEEEEEE
T ss_pred C---CCCCceEEEeCCCCcEEEEec
Confidence 1 12244577777 477666554
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.00 E-value=0.43 Score=50.77 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=99.2
Q ss_pred EEecCCCEEEEEe-----C-------CeEEEEECCCCceeeEecCCC-CCe-EEEEEecCCCcEEEEEecc--------C
Q 001318 812 ALSKNDSYVMSAS-----G-------GKISLFNMMTFKTMATFMPPP-PAA-TFLAFHPQDNNIIAIGMDD--------S 869 (1101)
Q Consensus 812 ~~s~dg~~la~~s-----d-------g~i~vwd~~~~~~~~~~~~~~-~~i-~~l~~sp~d~~~lasg~~d--------g 869 (1101)
+...+++.++.|+ + ..+.+||..+.+-. .+.... ... .+++.. ++++++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 3445777777665 1 12788898875432 221111 111 122222 67788888743 3
Q ss_pred eEEEEEeecce--EeeeecCcccCeeEEEEcCCCCEEEEEeC-C-----CceEEEeCCCcccccceeeecCCCCCCCCCC
Q 001318 870 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 941 (1101)
Q Consensus 870 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1101)
.+.+||..+.+ .+..+......-..+. -++++++.||. + ..+.+||..+.+-..... .... ..
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~-----r~ 188 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTA-----RS 188 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSC-----CB
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCc-----hh
Confidence 68899987753 3332222111112222 36777788876 2 358889988754221111 1111 11
Q ss_pred CeEEEEcCCCcEEEE-EeCC-----eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----------
Q 001318 942 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1004 (1101)
Q Consensus 942 v~~~~~s~dg~~la~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg----------- 1004 (1101)
-..++ .-+++.++. +.++ .+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.++
T Consensus 189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~ 265 (315)
T 4asc_A 189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLV-SLVGTLYAIGGFATLETESGELVPT 265 (315)
T ss_dssp SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEE
T ss_pred ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEE-EECCEEEEECCccccCcCCcccccc
Confidence 12222 226666666 4332 68899998876544322111 11111222 22677777777642
Q ss_pred ---eEEEEEcCCceeeee
Q 001318 1005 ---TVCVFSAANLKLRCR 1019 (1101)
Q Consensus 1005 ---~v~vwd~~~~~~~~~ 1019 (1101)
.|.+||+.+.+-...
T Consensus 266 ~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 266 ELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEEETTTTEEEEE
T ss_pred ccCcEEEecCCCChhhhh
Confidence 378899888765543
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.94 E-value=0.39 Score=59.86 Aligned_cols=236 Identities=13% Similarity=0.127 Sum_probs=142.2
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc-eEeeeecC
Q 001318 809 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKG 887 (1101)
Q Consensus 809 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~ 887 (1101)
-+.-++|..+.+|.-...++.|||+++...++.+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+...+..
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 345677888888877788899999998777766553 33566666764 44555554 568999999642 34444544
Q ss_pred c----ccCeeEEEEcCCCCEEEEEeC-------CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEE--cCCCcEE
Q 001318 888 H----SKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF--HQDQIHF 954 (1101)
Q Consensus 888 h----~~~V~~l~~s~dg~~l~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l 954 (1101)
| ...|..-..+++.++++..|- .|.+.+|.++.+. -+...||... -..+.+ .+....|
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~---F~~~~~~~~~~~~~l 215 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAAS---FAQFKMEGNAEESTL 215 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhh---hheeccCCCCCCceE
Confidence 4 345777778889999885542 4778899887643 2334444321 111111 1111223
Q ss_pred EE-Ee----CCeEEEEEcCCc---e------eeeec-cCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeee
Q 001318 955 LV-VH----ETQLAIFETTKL---E------CVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 955 a~-~~----d~~v~vwd~~~~---~------~~~~~-~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~ 1019 (1101)
.+ +. .+.++|.++... . .+..+ .++.-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+
T Consensus 216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 22 22 267888887442 1 11111 1112244456788888888888889999999999999998865
Q ss_pred cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCC
Q 001318 1020 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1068 (1101)
Q Consensus 1020 ~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~ 1068 (1101)
-+. . +..|+ ..+.....+ =++.....|.|.--.+....
T Consensus 296 ~ri----s----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 296 NRI----S----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred ccc----c----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence 441 1 11133 222222122 24444577877777776655
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.93 E-value=1.6 Score=48.56 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=112.6
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCceeeEecC-CCCCeEEEEEe--cCCCcEEEEEec-------cCeE---------EE
Q 001318 815 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 873 (1101)
Q Consensus 815 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v 873 (1101)
.||+||.... +..|...++...++-+.+.- ....+-.++|- | +..|++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5889999988 57788899988887666543 34557777776 5 6667776653 3321 11
Q ss_pred EE---eecceEeeeecCcccCeeEEEEcCCCCEEEEEeCCC---------------ceEEEeCCC-------cccccce-
Q 001318 874 YN---VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDG-------WEKQKNR- 927 (1101)
Q Consensus 874 wd---~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~---------------~v~iwd~~~-------~~~~~~~- 927 (1101)
|. ..+.+...++. -.+..-.+...++|++.++.+... .+.++++.. |+.....
T Consensus 219 f~~iD~~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 11 11111111110 012223344566777777765432 245555321 1110000
Q ss_pred -eeecCCCCC------------CCCCCCeEEEEcCCCcEEEEE--eCCeEEEEEcCCcee-------------eeeccCC
Q 001318 928 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 979 (1101)
Q Consensus 928 -~~~~~~~~~------------~~~~~v~~~~~s~dg~~la~~--~d~~v~vwd~~~~~~-------------~~~~~~~ 979 (1101)
-..+..+.. +...+...+.++|||++++++ -+.++.++|..+... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 111345778999999999995 567899999885322 11221
Q ss_pred CCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 980 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 980 ~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
-.-.....+|.++|....+-..|..|..|++...
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1456788999999955566668999999999764
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.89 E-value=1.4 Score=46.80 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=111.1
Q ss_pred CeEEEEECCCCceeeE-ecCCCCCeEEEEEecCCCcEEEEEec----cC-------eEEEEEeecceE--eeeecCcccC
Q 001318 826 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR 891 (1101)
Q Consensus 826 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~~--~~~l~~h~~~ 891 (1101)
..+..||..+.+-... +..........+... ++++++.|+. ++ .+.+||..+.+- +..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999987664432 221122223333344 7788888883 12 277888776542 2222211111
Q ss_pred eeEEEEcCCCCEEEEEeCC-------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-e-C---
Q 001318 892 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 959 (1101)
Q Consensus 892 V~~l~~s~dg~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d--- 959 (1101)
-..+.+ +++.++.||.+ ..+.+||..+.+-.... ...... .-.+++. .+++.++.+ . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPIKV-----YGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSSCE-----ESCEEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCCcc-----cccEEEE-ECCEEEEEcCCCCCCC
Confidence 122222 67778888764 24778888764422111 111110 1122222 466666663 2 1
Q ss_pred --CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceeeeecCCCcccCCCCCC
Q 001318 960 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1032 (1101)
Q Consensus 960 --~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 1032 (1101)
..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||+.+.+....-. +|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence 359999998876543322111 111122222 267777777643 357889998876543211 2222111
Q ss_pred CCccceEEEEeCCCCCEEEEEecC--------------CcEEEEeccCCC
Q 001318 1033 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1068 (1101)
Q Consensus 1033 ~~v~~~~i~~~~~d~~~l~s~~~d--------------g~v~vW~~~~~~ 1068 (1101)
. ++... ++++++.|+.+ ..+.++|+.+.+
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 23332 46778887764 357778887754
No 333
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.069 Score=56.74 Aligned_cols=199 Identities=7% Similarity=0.025 Sum_probs=108.2
Q ss_pred cEEEEEeccCeEEEEEeecceEeeeecCc-ccCeeEEE---EcCCCCEEEEE-eCCCceEEEeCCCcccccceeeecCCC
Q 001318 860 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG 934 (1101)
Q Consensus 860 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~---~s~dg~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~ 934 (1101)
.++++++.||.|+-.|..+|+.+-+++.. ..++.... ...++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999988877643 12222211 00133334333 589999999988875432111111100
Q ss_pred CCCCCCCCeEEEE------------cCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCCCCC-----eeEEEEc-----C
Q 001318 935 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 992 (1101)
Q Consensus 935 ~~~~~~~v~~~~~------------s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~~~-----i~~l~~s-----p 992 (1101)
..-+.. +.+|..++.+.++.+...|+.+|+.+..+........ ..|.... -
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 000111 2445444447999999999999999988764321111 1111111 1
Q ss_pred CCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001318 993 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1071 (1101)
Q Consensus 993 dg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~vW~~~~~~~~~ 1071 (1101)
.+..|+.+..+..|.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 245677788888888777 5564 33322111111110 00000 0000011 3455 457889999999998888888
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.80 E-value=0.96 Score=49.04 Aligned_cols=59 Identities=8% Similarity=-0.068 Sum_probs=31.5
Q ss_pred eEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC------eEEEEEcCCceeeeecC
Q 001318 961 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1021 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg------~v~vwd~~~~~~~~~~~ 1021 (1101)
.+.+||+.+.+-...-.... ......++.-++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSS--CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCC--CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57899988765433211111 1111222334788888888653 36667998888876554
No 335
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.73 E-value=0.49 Score=49.95 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=98.4
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEeccC-----eEEEEEeecce--
Q 001318 816 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE-- 880 (1101)
Q Consensus 816 dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~-- 880 (1101)
+++.++.|+ + ..+.+||..+.+-... +........++ . - ++++++.|+.++ .+.+||..+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 666666665 3 3588999887543322 22111112222 2 2 677888887653 57788877653
Q ss_pred EeeeecCcccCeeEEEEcCCCCEEEEEeCC-------CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcE
Q 001318 881 VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 953 (1101)
Q Consensus 881 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 953 (1101)
.+..+.........+.+ +++.++.||.+ ..+.+||+.+.+-.... ...... .-.+++. -+++.
T Consensus 138 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~~~~~~-~~~~i 207 (302)
T 2xn4_A 138 HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA--EMSTRR-----SGAGVGV-LNNLL 207 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC--CCSSCC-----BSCEEEE-ETTEE
T ss_pred ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC--CCcccc-----ccccEEE-ECCEE
Confidence 23222221111222222 67777777653 34788998775422111 111111 1122222 25666
Q ss_pred EEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC-----eEEEEEcCCceee
Q 001318 954 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1017 (1101)
Q Consensus 954 la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg-----~v~vwd~~~~~~~ 1017 (1101)
++.+ .+ ..+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.++ .|.+||..+.+-.
T Consensus 208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 6664 32 479999998876543322111 11111222 23778888887654 4899999887654
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.73 E-value=0.73 Score=48.72 Aligned_cols=187 Identities=11% Similarity=0.049 Sum_probs=97.6
Q ss_pred CCCEEEEEeC----------CeEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc-----CeEEEEEeec
Q 001318 816 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 878 (1101)
Q Consensus 816 dg~~la~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~ 878 (1101)
++++++.|+. ..+.+||..+.+-... +........++. - ++++++.|+.+ ..+.+||..+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I-DGHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--E-TTEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--E-CCEEEEEcCCCCCcccccEEEECCCC
Confidence 5666665542 4588999877543222 211111222222 2 67788887754 3688899876
Q ss_pred ce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC-----CceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 879 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 879 ~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
.+ .+..+......-..+.+ ++++++.||.+ ..+.+||+.+.+-..... .... ..-.+++.. ++
T Consensus 147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~-----r~~~~~~~~-~~ 216 (308)
T 1zgk_A 147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTI-----RSGAGVCVL-HN 216 (308)
T ss_dssp TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSC-----CBSCEEEEE-TT
T ss_pred CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCc-----cccceEEEE-CC
Confidence 54 22222211111222233 67778887765 458889987754221111 1111 111222222 66
Q ss_pred cEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-----CeEEEEEcCCceee
Q 001318 952 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1017 (1101)
Q Consensus 952 ~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d-----g~v~vwd~~~~~~~ 1017 (1101)
+.++.+ .+ ..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+..
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 666664 32 569999998876544322111 111122222 267787877754 35888998877654
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.69 E-value=0.29 Score=47.52 Aligned_cols=148 Identities=12% Similarity=0.052 Sum_probs=84.4
Q ss_pred CCeEEEEEecCCCcEEEEEeccCeEEEEEeecceE------eeee--cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeC
Q 001318 847 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 918 (1101)
Q Consensus 847 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~------~~~l--~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~ 918 (1101)
..+..++|+| ++.+.++ .+|.++-.+..+... -..+ .+... -.++.|.++|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 4678999999 8987777 778776666543111 0111 01112 478999999988888 5688877765
Q ss_pred CCcccccceee--ecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCceee-----eeccCCCCCCCeeEEEEc
Q 001318 919 DGWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFS 991 (1101)
Q Consensus 919 ~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~i~~l~~s 991 (1101)
.+.......-. .+-.+.- ..+..+.|.|+|.+.++. |+.+.-....+.... ............+.+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 33222111000 0000000 256899999999999988 888543333221110 001111223345567788
Q ss_pred CCCCEEEEEEcCCeE
Q 001318 992 CDSQLVYACFLDATV 1006 (1101)
Q Consensus 992 pdg~~l~s~s~dg~v 1006 (1101)
++|.+.++. +|.+
T Consensus 191 ~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKF 203 (236)
T ss_dssp TTSCEEEEE--TTEE
T ss_pred CCCcEEEEe--CCeE
Confidence 888876655 6643
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.43 E-value=0.065 Score=52.00 Aligned_cols=146 Identities=13% Similarity=0.010 Sum_probs=82.8
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCcee------eEec-CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM------ATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 879 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~------~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~ 879 (1101)
.+..++|+|+|.+.++ .+|.++-.+..+.... ..+- .--....++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998887 8888777776542221 1110 0011147899999 8888877 5698887775331
Q ss_pred eEe------eee-cCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccce--eeecCCCCCCCCCCCeEEEEcCC
Q 001318 880 EVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 880 ~~~------~~l-~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
..- .++ .+-=..+..|.|.|+|.+.+.. |+.+.-+...++...... ...+-.+.. ..-+.+.|+++
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~~ 192 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSSV 192 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECTT
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECCC
Confidence 100 001 1111457899999999888776 776543333221100000 000000000 12345679999
Q ss_pred CcEEEEEeCCeE
Q 001318 951 QIHFLVVHETQL 962 (1101)
Q Consensus 951 g~~la~~~d~~v 962 (1101)
|...++. ++.+
T Consensus 193 G~l~~v~-~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ-GGKF 203 (236)
T ss_dssp SCEEEEE-TTEE
T ss_pred CcEEEEe-CCeE
Confidence 9888777 6643
No 339
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.25 E-value=2.6 Score=44.07 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=98.7
Q ss_pred EecCCCEEEEEe---CCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEecc--------------CeEEEEE
Q 001318 813 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 875 (1101)
Q Consensus 813 ~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd 875 (1101)
|+.++.+++... ++.|+..+..... ...+.. -.+--+++ ++.+|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 345777777764 4677777765433 334331 12345678 66777666542 3566666
Q ss_pred eecceEeeeecCcccCeeEEEEcCCCCEEEEEe--CCCc--eEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCC
Q 001318 876 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 951 (1101)
Q Consensus 876 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s--~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 951 (1101)
+...+ ...+.. .. +..|++++++|+-.. .++. |..-++++... ..+. .+ .+ .+|+++|
T Consensus 95 ~dg~~-~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt---~~------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHG-STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIK---NH------YL--FTCNTSD 156 (302)
T ss_dssp TTSCC-CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEE---SS------CC--CCSEEET
T ss_pred CCCCc-ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEe---CC------Cc--eEeeEEC
Confidence 66543 222221 11 236788999988765 3444 44445554321 1111 11 11 3568899
Q ss_pred cEEEEEe--CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--CeEEEEEcCCce
Q 001318 952 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1015 (1101)
Q Consensus 952 ~~la~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--g~v~vwd~~~~~ 1015 (1101)
+.|.-.. ..+|.+.++..+.....+. + ... ..+.|++++|+-...+ ..|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 9888754 4678888887766544432 1 222 3466999998876644 356666766554
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.23 E-value=1.2 Score=47.31 Aligned_cols=193 Identities=8% Similarity=0.012 Sum_probs=97.8
Q ss_pred EEecCCCEEEEEe-C----C-------eEEEEECCCCceeeE--ecCCCCCeEEEEEecCCCcEEEEEecc-------Ce
Q 001318 812 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 870 (1101)
Q Consensus 812 ~~s~dg~~la~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~ 870 (1101)
+...+++.++.|+ . + .+.+||..+.+-... +........ ++.. ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~--~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG-LGEV--DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE-EEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc-eEEE--CCEEEEEcCccCCCCcccce
Confidence 3445777777775 1 1 177888876543221 221111122 2222 57788888764 35
Q ss_pred EEEEEeecce--EeeeecCcccCeeEEEEcCCCCEEEEEeCC------CceEEEeCCCcccccceeeecCCCCCCCCCCC
Q 001318 871 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 942 (1101)
Q Consensus 871 v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 942 (1101)
+.+||..+.+ .+..+......-..+. .++++++.||.+ ..+.+||+.+.+-.... ...... .-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r-----~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA--PMKTPR-----SM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC--CCSSCC-----BS
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC--CCCCCc-----cc
Confidence 7888887643 2222221111111222 467777777642 35889998875422111 111111 11
Q ss_pred eEEEEcCCCcEEEEE-eC-----CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC-------------
Q 001318 943 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1003 (1101)
Q Consensus 943 ~~~~~s~dg~~la~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d------------- 1003 (1101)
.+++. -+++.++.+ .+ ..+.+||+.+.+-...-.... ...-.+++ .-++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE-EECCEEEEECCeeccCCCCceeccce
Confidence 22222 256666663 22 357899998876543322111 11111222 2367777777654
Q ss_pred -CeEEEEEcCCceeeee
Q 001318 1004 -ATVCVFSAANLKLRCR 1019 (1101)
Q Consensus 1004 -g~v~vwd~~~~~~~~~ 1019 (1101)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588899888766543
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.93 E-value=0.7 Score=57.72 Aligned_cols=247 Identities=9% Similarity=0.095 Sum_probs=136.4
Q ss_pred EEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCC
Q 001318 350 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 429 (1101)
Q Consensus 350 ~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~ 429 (1101)
+.-.+|..+ ++|.-. ..++.|+|+++.+.+....+ ...|..=.|-.+..+ +-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l-~lVT-~~ 125 (1630)
T 1xi4_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTV-ALVT-DN 125 (1630)
T ss_pred hhccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCee-EEEc-CC
Confidence 344567766 455443 57899999999887764222 234555555544433 3332 45
Q ss_pred eEEEEEccCCceeeeeeeeccc----cCCeeEEEEcCCCCeEEEEEec------CCCcEEEEeCCCCceEEEecCcccCe
Q 001318 430 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 499 (1101)
Q Consensus 430 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~~~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 499 (1101)
.|.-|++.+...... .+..| ...|..-.-+++.+. ++++|= -.|.+.+|..+.+. .+.+.||.+..
T Consensus 126 aVyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F 201 (1630)
T 1xi4_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF 201 (1630)
T ss_pred eEEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhh
Confidence 699999975332221 23333 346777778888886 333332 45788888865443 35567776655
Q ss_pred EEEeeeecCCccEEEEEec----CCcEEEEecCCC-CceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCC
Q 001318 500 YSVCPHHKENIQFIFSTAL----DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 574 (1101)
Q Consensus 500 ~~v~~~~~~~~~~l~s~~~----dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1101)
..+.....+....+++-.. .+.+++-++... .... .-......+.|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g 271 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccC
Confidence 4443322222122322221 267888877543 1111 1112233445555432 12334566777777
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 575 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 575 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+...+.-|.|.+||+.++.++..-+.... .|...+......-++.....|.|.-..+..
T Consensus 272 ~iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred EEEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 888889999999999999998766554333 232223333222333344556665555543
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.81 E-value=5.1 Score=42.62 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.5
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecC---CC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 420 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 420 (1101)
.-...+.++|.|||+ ++++--..|.|++++..+++......+ ..+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence 345679999999998 466554489999998766543211000 0022334567899999995 44
Q ss_pred eEEEE-E--cCCeEEEEEccCCc----e---eeeee-eec-cccCCeeEEEEcCCCCeEEEEEe
Q 001318 421 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 472 (1101)
Q Consensus 421 ~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~~~~s~d~~~~~l~s~ 472 (1101)
+|... + .+..|.-|.+..+. . .+.+. .+. +....-..|+|.|||. ++++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 45443 2 34566667665521 1 11111 121 1122456799999997 45553
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.24 Score=52.55 Aligned_cols=147 Identities=12% Similarity=0.008 Sum_probs=73.0
Q ss_pred CCeEEEEECCCCceeeEecC----CCCCeEE---EEE-----ecCCCcEEEEEeccCeEEEEEeecceEeeeecCcc--c
Q 001318 825 GGKISLFNMMTFKTMATFMP----PPPAATF---LAF-----HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--K 890 (1101)
Q Consensus 825 dg~i~vwd~~~~~~~~~~~~----~~~~i~~---l~~-----sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~--~ 890 (1101)
||.|..++..+|.....+.. ...++.. ..+ +. .+..+++|+.+|.++..|+.+|+.+..+.... +
T Consensus 66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~ 144 (339)
T 2be1_A 66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG 144 (339)
T ss_dssp TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC
T ss_pred CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc
Confidence 88888888887754433321 1111111 001 01 34577889999999999999999988875321 1
Q ss_pred C-----eeEEEEc-----CCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCC
Q 001318 891 R-----ITGLAFS-----HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 960 (1101)
Q Consensus 891 ~-----V~~l~~s-----~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 960 (1101)
. ..|.... ..+..|+.+..+..+.+.+ .+|+ .......................++.|+.++++..|+
T Consensus 145 ~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg 222 (339)
T 2be1_A 145 YFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDK 222 (339)
T ss_dssp --------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTT
T ss_pred cccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCC
Confidence 0 0111110 1234566666666666655 3332 1111000000000000000001123457776667888
Q ss_pred eEEEEEcCCceeee
Q 001318 961 QLAIFETTKLECVK 974 (1101)
Q Consensus 961 ~v~vwd~~~~~~~~ 974 (1101)
.|..+|..+|..+-
T Consensus 223 ~v~A~d~~~G~~~W 236 (339)
T 2be1_A 223 SLLASDLDFRIARW 236 (339)
T ss_dssp EEEEECSTTCCEEE
T ss_pred EEEEEECCCCcEEE
Confidence 88888888877654
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.57 E-value=1.9 Score=51.41 Aligned_cols=197 Identities=10% Similarity=0.068 Sum_probs=106.1
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCceeeEe-c-------CCCCCeEEEEEecCCCcEEEEEeccC------eEEEEE
Q 001318 815 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 875 (1101)
Q Consensus 815 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd 875 (1101)
.++..++.|+ + ..+.+||..+.+-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5666667665 3 45889998876543322 1 1112233444433 567888887543 578899
Q ss_pred eecc--eEeeeecCcccCeeEEEEcCCCCEEEEEeCCC--ceEEEeCCCcccccceeee-cCCCCCCCCCCCeEEEEcCC
Q 001318 876 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 876 ~~~~--~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 950 (1101)
..+. +.+..+......- +++...++++++.||.++ .+.+||..+..-....... ..... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 8774 3333332111111 222223788888888765 6889998875421111100 11111 12344666665
Q ss_pred -CcEEEEE-e--C-----CeEEEEEcCCce------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcC--------CeEE
Q 001318 951 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1007 (1101)
Q Consensus 951 -g~~la~~-~--d-----~~v~vwd~~~~~------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~d--------g~v~ 1007 (1101)
++.++.+ . + +.+.+||+.+.. .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666664 3 2 468999998877 22111100001111233333347888888743 4599
Q ss_pred EEEcCCceee
Q 001318 1008 VFSAANLKLR 1017 (1101)
Q Consensus 1008 vwd~~~~~~~ 1017 (1101)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988765
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.43 E-value=3.9 Score=45.71 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=61.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCC--CCCCCCCeEEEEcCC---CcEEEE--Ee-----
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQD---QIHFLV--VH----- 958 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---g~~la~--~~----- 958 (1101)
.-++|+|.|||+++++-...+.|++++..++.... ........ ......+..++|+|| +.+|.+ +.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 46799999999988875544568888765544221 11221111 011246679999995 444444 22
Q ss_pred -------CCeEEEEEcCCc-------eeee-eccCCCCCCCeeEEEEcCCCCEEEEEEc
Q 001318 959 -------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1002 (1101)
Q Consensus 959 -------d~~v~vwd~~~~-------~~~~-~~~~~~h~~~i~~l~~spdg~~l~s~s~ 1002 (1101)
...|.-|+...+ +.+. .+. .........|+|.|||.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 235655655321 1111 122 122235789999999998776553
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=93.09 E-value=12 Score=40.83 Aligned_cols=260 Identities=9% Similarity=0.029 Sum_probs=118.4
Q ss_pred CCCeeEEEEec--CCCEEEEEeCC----eEEEEECCCCceeeEec------C--------CCCCeEEEEEecCC-CcEEE
Q 001318 805 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA 863 (1101)
Q Consensus 805 ~~~i~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~d-~~~la 863 (1101)
...|.++++.| ++.+++.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45689999998 55565555554 444432 2222212211 1 11247789998743 44555
Q ss_pred EEeccCeEEEEEee--cceEeeeecC----------------cccCeeEEEEcCC-CCEEEEEeCCCceEEEeCCCcccc
Q 001318 864 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ 924 (1101)
Q Consensus 864 sg~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-g~~l~s~s~D~~v~iwd~~~~~~~ 924 (1101)
++...+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+- .++ .
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~-t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT-D 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS-S
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCC-C
Confidence 56556655544211 1222221111 1235788999873 344444443443433322 221 1
Q ss_pred cceeeec-CC-CCCC-----CCCCCeEEEEcCC-CcEEEEEeCCeEEEEEcCCceeeeeccCCCCC---CCeeEEEEcC-
Q 001318 925 KNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC- 992 (1101)
Q Consensus 925 ~~~~~~~-~~-~~~~-----~~~~v~~~~~s~d-g~~la~~~d~~v~vwd~~~~~~~~~~~~~~h~---~~i~~l~~sp- 992 (1101)
...+.. .. ...+ ....+..++++|+ ...|.++..+.|...+-. ++.-..+...-.. ..+.++++.|
T Consensus 211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence 111110 00 0000 0024788999986 355555555655554422 2222222210001 3467788886
Q ss_pred CCCEEEEEEc-----------CCeEEEEEcCC-ceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEE
Q 001318 993 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1060 (1101)
Q Consensus 993 dg~~l~s~s~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~ 1060 (1101)
+...|.++.. ++...||...+ |+.-..+. .-++....-..+....++++|.++..|+.++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 3344444432 33345665544 34333332 112221100011122577888666667777666654
Q ss_pred EEeccCCCccccC
Q 001318 1061 VFEPLESEGKWGV 1073 (1101)
Q Consensus 1061 vW~~~~~~~~~~~ 1073 (1101)
|.-.++..+|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444445543
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.86 E-value=10 Score=39.47 Aligned_cols=174 Identities=12% Similarity=0.136 Sum_probs=101.4
Q ss_pred EEEecCCCEEEEEe-C--------------CeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEe--ccC--eE
Q 001318 811 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDS--SI 871 (1101)
Q Consensus 811 ~~~s~dg~~la~~s-d--------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg--~v 871 (1101)
--++++|.+|+... . ..|+..++...+... +.. . .+..|++ ++++|+... .++ .|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~--~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D--PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S--CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C--CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678999988876 2 247777777654332 321 1 2236788 677777665 344 44
Q ss_pred EEEEeecceEeeeecCcccCeeEEEEcCCCCEEEEEeC-CCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC
Q 001318 872 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 950 (1101)
Q Consensus 872 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 950 (1101)
+.-++. +.....+..+.. .+|+++++.|.-.+. ...|.+-++.++... .+ ..+. ....++|+
T Consensus 132 y~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~ 194 (302)
T 3s25_A 132 YRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLD 194 (302)
T ss_dssp EEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEE
T ss_pred EEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeec
Confidence 444544 333445544432 456788988886665 567777787765422 11 1221 23456799
Q ss_pred CcEEEEEe--C-CeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEc--CCeEEEEEcCCc
Q 001318 951 QIHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1014 (1101)
Q Consensus 951 g~~la~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~--dg~v~vwd~~~~ 1014 (1101)
+.+|+-.. + ..|..-++...... .+. ...+ ..|+|++++|+.++. .+.|..-+++..
T Consensus 195 g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 195 DTNVYYMDVNRDNAIVHVNINNPNPV-VLT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp TTEEEEEEGGGTTEEEEECSSSCCCE-ECS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCEEEEEEcCCCcEEEEEECCCCCeE-EEe----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 99988742 2 36777777665533 222 2233 348888998876543 355666666543
No 348
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=92.79 E-value=0.17 Score=46.67 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=61.1
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.|||||..|..++|..+|.+--..+.....+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~ 131 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 131 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence 8999999999999999999999999997544445567899999999888777776666666654 244556666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 132 ~fL~~ 136 (156)
T 2nxp_A 132 RHLQE 136 (156)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66666
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.37 E-value=9.6 Score=39.28 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=114.6
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.|..++....- .++.. ||.|+.|-......+..-......|..++... ...++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 46666654432 23333 88888887654322211111123577777653 345555 4 9999999865422221111
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd 966 (1101)
.-...|..|+...+. .+... ||.|..|-.....+... ... ....|..++...+-..+ .. |+.|..|-
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~---~~~-----~~~~i~~i~~G~~~~~~-l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV---PAE-----AQSGVTALDGGVYTALA-VK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC---CGG-----GGSSEEEEEECSSEEEE-EE-TTEEEEEE
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC---Ccc-----CCCCeEEEEcccCEEEE-EE-CCEEEEec
Confidence 113468888776543 33334 89999997654222110 000 01245555544433222 24 88999987
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCC
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d 1046 (1101)
.....++.... .-...|..++-..+..+ +. .||.|+.|-....-.+. .|.. ....+. .|+.-.
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEEE-EE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEEE-EE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 66533322111 11346777776544333 33 59999999765432221 0100 011133 455433
Q ss_pred CCEEEEEecCCcEEEEeccCC
Q 001318 1047 PNEFALGLSDGGVHVFEPLES 1067 (1101)
Q Consensus 1047 ~~~l~s~~~dg~v~vW~~~~~ 1067 (1101)
...++.. ||.|+.|=-...
T Consensus 229 ~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCEEEEE--TTEEEEESTTCC
T ss_pred CEEEEEE--CCEEEEecCCCC
Confidence 2344444 999999986543
No 350
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=92.11 E-value=0.12 Score=46.33 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=58.9
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..|..++|..++.+--..+... .+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 899999999999999999999999998755555555 899999999988877776666555533 245556666
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 351
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=90.78 E-value=0.1 Score=47.42 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=56.8
Q ss_pred ehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhhccCC-------chHHHHHHH
Q 001318 59 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-------TKSARSIML 131 (1101)
Q Consensus 59 ~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-------~~~~r~~l~ 131 (1101)
++|.|+-+.||||+..| .++|..+|.+--..+.....+.+++|+.+....+..+++....+.. .+.+-..|+
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s~~lL~ 113 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL 113 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 89999999999999999 9999999986444444456788889988888777776666555543 234445555
Q ss_pred HHHhh
Q 001318 132 VELKK 136 (1101)
Q Consensus 132 ~~l~~ 136 (1101)
.-|++
T Consensus 114 ~fL~~ 118 (148)
T 2j49_A 114 YFLNE 118 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.03 E-value=9.9 Score=45.22 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=102.0
Q ss_pred CCcEEEEEecc----CeEEEEEeecce--Eee-e-----ecCcccCeeEEEEcCCCCEEEEEeCCC------ceEEEeCC
Q 001318 858 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 919 (1101)
Q Consensus 858 d~~~lasg~~d----g~v~vwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~dg~~l~s~s~D~------~v~iwd~~ 919 (1101)
++.+++.|+.+ ..+.+||..+++ .+. . +......-..+.+..+++.++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 66777777753 368888887653 222 1 111111122233322778888887543 47888888
Q ss_pred CcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE-eCC--eEEEEEcCCceeeeecc---CCCCCCCeeEEEEcCC
Q 001318 920 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 993 (1101)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~--~v~vwd~~~~~~~~~~~---~~~h~~~i~~l~~spd 993 (1101)
+.+-.....+ ... ..-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~W~~~~~~--p~~-----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TREWSMIKSL--SHT-----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTEEEECCCC--SBC-----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCcEEECCCC--CCC-----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7432111111 111 112334443477777773 322 79999998876543321 0001112233555555
Q ss_pred -CCEEEEEEc--C-----CeEEEEEcCCcee-----eeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC----
Q 001318 994 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1056 (1101)
Q Consensus 994 -g~~l~s~s~--d-----g~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---- 1056 (1101)
+++++.|+. + ..+.+||+.+... -..+......+.. .. ++.... ++++++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence 677777775 2 3589999988772 1122110001110 11 222222 26788888753
Q ss_pred ----CcEEEEeccCCC
Q 001318 1057 ----GGVHVFEPLESE 1068 (1101)
Q Consensus 1057 ----g~v~vW~~~~~~ 1068 (1101)
..+.++|+.+.+
T Consensus 622 ~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET 637 (695)
T ss_dssp CCTTTSEEEEETTTTE
T ss_pred CCCCCeEEEEECCCCe
Confidence 458899987765
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.00 E-value=23 Score=37.95 Aligned_cols=156 Identities=8% Similarity=0.081 Sum_probs=89.8
Q ss_pred CeEEEEECCCC--ceeeEecCC------CCCeEEEEEe---cC---CCcEEEEEe-ccCeEEEEEeecceEeeeecCccc
Q 001318 826 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK 890 (1101)
Q Consensus 826 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~ 890 (1101)
-+|.+||+.+. +.++++.-. ......+++. |. ++.++..++ ..+.|.|||+.+++..+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 35778888888 777775422 3357788887 21 134555554 4678999999998877665311
Q ss_pred CeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCC----CcEEEEEeCCeEEEEE
Q 001318 891 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE 966 (1101)
Q Consensus 891 ~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----g~~la~~~d~~v~vwd 966 (1101)
|.|+.....+. +|.-.-|. ..+..+++||+ ++.|....-..-++|.
T Consensus 201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 34542111111 22211121 25688999998 7777775433444454
Q ss_pred cCCc--------eeeeeccCCCCCCCeeEEEEc-CCCCEEEEEEcCCeEEEEEcCC
Q 001318 967 TTKL--------ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1013 (1101)
Q Consensus 967 ~~~~--------~~~~~~~~~~h~~~i~~l~~s-pdg~~l~s~s~dg~v~vwd~~~ 1013 (1101)
+.+. ..++.+-..+....-..+++. .+|.++++--....|..|+..+
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4321 111111111112334456775 6787778777888999999875
No 354
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.39 E-value=31 Score=40.87 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=121.8
Q ss_pred eEEE-EecCCCEEEEEe--C----CeEEEEECCCCceeeE-ecCCCC--------CeEEEEEecCCCcEEEEEe------
Q 001318 809 PCFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------ 866 (1101)
Q Consensus 809 ~~~~-~s~dg~~la~~s--d----g~i~vwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~------ 866 (1101)
..+. ++||+++++.+- + ..++++|+.+++.+.. |. ... ....++|.. +..++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence 3344 889999888762 3 3599999999876632 22 111 113457875 444444321
Q ss_pred ----ccCeEEEEEeecc--eEeeeecCcccC-eeEEEEcCCCC-----EEEEEeCC---CceEEEeCCCcccccceeeec
Q 001318 867 ----DDSSIQIYNVRVD--EVKSKLKGHSKR-ITGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQI 931 (1101)
Q Consensus 867 ----~dg~v~vwd~~~~--~~~~~l~~h~~~-V~~l~~s~dg~-----~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~ 931 (1101)
....|+.|.+-+. +-...+.+.... -.+...++|++ .+++.+.+ ..+.+.+....... ...+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeec
Confidence 1247888877553 112223332222 23455567766 34554423 33455555431111 111111
Q ss_pred CCCCCCCCCCCeEEEEcCCCcEEEEE-----------eCCeEEEEEcCCce-------eeeeccCCCCCCCeeEEEEcCC
Q 001318 932 PTGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCD 993 (1101)
Q Consensus 932 ~~~~~~~~~~v~~~~~s~dg~~la~~-----------~d~~v~vwd~~~~~-------~~~~~~~~~h~~~i~~l~~spd 993 (1101)
.. -..+..+.++.+++.. ..+.|.+.|+.++. ....+........+..+.+..+
T Consensus 289 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 289 PS--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp CT--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred CC--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 11 1223445566666532 35678999987752 1222222233567888999876
Q ss_pred CCEEEEEEcCCe--EEEEEcCCce-eeee-cCCCcccCCCCCCCCccceEEEEeCCCCCEEEEEecC---CcEEEEecc
Q 001318 994 SQLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1065 (1101)
Q Consensus 994 g~~l~s~s~dg~--v~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~d---g~v~vW~~~ 1065 (1101)
.++++...++. |+++|+.+++ .... +. ++.. +.+. .....++.+.++++.+.. +.++.+|+.
T Consensus 361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56777777775 6777877775 2222 33 2211 1122 234445444455554433 467777765
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.95 E-value=3.5 Score=45.99 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=79.0
Q ss_pred CCCeeEEEEecCCCEEEEEe--CCeEEEEECCCCce-------------eeEecCCCCCeEEEEEecCCCcEEEEEeccC
Q 001318 805 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 869 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg 869 (1101)
......+.++|||+++++++ +.++.++|++.... ....+ -.-.....+|.+ +|.-..+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34456789999999999988 78999999874211 11122 234578899999 786666677899
Q ss_pred eEEEEEeecc----------eEeeeecCcccCeeEEEE------cCCCCEEEEEe---CCCce----------EEEeCCC
Q 001318 870 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG---ADSQL----------CVWSSDG 920 (1101)
Q Consensus 870 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s---~D~~v----------~iwd~~~ 920 (1101)
.|.-|++... ..+.++.-|-.+ -.+.- .+||++|++.. .|+.+ .+.|+..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 9999999764 466666666543 23333 47999999975 45543 5667655
Q ss_pred c
Q 001318 921 W 921 (1101)
Q Consensus 921 ~ 921 (1101)
.
T Consensus 479 d 479 (638)
T 3sbq_A 479 D 479 (638)
T ss_dssp S
T ss_pred C
Confidence 3
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.52 E-value=31 Score=35.33 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=98.0
Q ss_pred CeeEEEEecCCCEEEEEeCCeEEEEECCCCceeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecceEeeeec
Q 001318 807 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 886 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~ 886 (1101)
.|..++...+-. ++. .||.|+.|-......+..-..-...|..++... ...++ -. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 456666544332 333 488888887654322211111124677777764 33333 45 9999999765422222212
Q ss_pred CcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEE
Q 001318 887 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 966 (1101)
Q Consensus 887 ~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd 966 (1101)
.....|..++...+.. ++ .. |+.|..|-.....+... +... ...|..++...+... +. .++.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2335577777654432 23 33 78999997654222110 0000 124566665554443 33 799999997
Q ss_pred cCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCc
Q 001318 967 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1014 (1101)
Q Consensus 967 ~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~ 1014 (1101)
.....++..-. .-...|..++-..+..+.++ ||.|+.|-....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 65543322111 11345777776554444333 999999976554
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=85.40 E-value=9.1 Score=42.69 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=61.3
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCceEEEeCCCcccccceeeecCCCCC-----CCCCCCeEEEEcCC----CcEEEE-EeC
Q 001318 891 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VHE 959 (1101)
Q Consensus 891 ~V~~l~~s~dg~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~d----g~~la~-~~d 959 (1101)
.-++|+|.|||. .|+.+...|.|++++...... ......+..... ........++|+|+ +.+.++ +.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 457899999996 444556789999997543211 111111111000 11246788999997 444443 321
Q ss_pred ------------CeEEEEEcCC----------ceeeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCC
Q 001318 960 ------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1004 (1101)
Q Consensus 960 ------------~~v~vwd~~~----------~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg 1004 (1101)
..|.-|.+.. .+.+..+...........|+|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455532 12222222112223467899999998777666443
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=79.34 E-value=82 Score=34.88 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=60.8
Q ss_pred CCcEEEEEecCCC-eEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCccccccccc----CCCCCeEEEEEecC--
Q 001318 346 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 418 (1101)
Q Consensus 346 ~~v~~~~~spdg~-~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 418 (1101)
...+.|+|.|||+ +++ ++...|.|++++..... .. ..+ -++. ..+.. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~-V~er~G~i~~~~~~g~~-~~-~~~--~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLF-ILEKEGYVKILTPEGEI-FK-EPY--LDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEE-EEETTTEEEEECTTSCB-CS-SCS--EECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEE-EEeCCceEEEEeCCCCe-ee-eee--cCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 5678999999995 434 44678999999754321 10 000 0110 00111 22567889999996
Q ss_pred --CCeEEEEEcC------------CeEEEEEccCC--c-----eeeeeeeec--cccCCeeEEEEcCCCCeEEEEEec
Q 001318 419 --GSLFGVAYSR------------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG 473 (1101)
Q Consensus 419 --g~~las~~~d------------~~i~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~~~~s~d~~~~~l~s~~ 473 (1101)
+.+.++-+.+ ..|.-|.+..+ . ..+.+..+. ........|+|.|||. |++.+|.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 4444443321 14445666432 0 111121221 2223468899999997 3444443
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.06 E-value=7.4 Score=48.13 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=51.7
Q ss_pred CCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCcccCCCCCCCCccceEEEEeCCCCCEEEEE---ecCCc
Q 001318 982 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGG 1058 (1101)
Q Consensus 982 ~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~---~~dg~ 1058 (1101)
...+.+++..+|..++++-+.|+++|||++.+++++.........+.. .. .. .....|..+.++.+- ..+|.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~--~~-~~--~~~~~~~~~~~i~v~~s~~~~g~ 309 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL--QS-FP--YLTSDHTTNSFIALYYPDNSHGS 309 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS--CC-CC--CEEECSSSTTEEEEEECCSSSCE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc--cc-cc--ccccCCCcccEEEEEEcCCCCcE
Confidence 346777888889999999999999999999999999876543322221 11 11 122233334443322 24577
Q ss_pred EEEEeccCCC
Q 001318 1059 VHVFEPLESE 1068 (1101)
Q Consensus 1059 v~vW~~~~~~ 1068 (1101)
.++|.+....
T Consensus 310 F~~~~~~~~~ 319 (950)
T 4gq2_M 310 FSIYKLNANA 319 (950)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEecCC
Confidence 7888775443
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=77.68 E-value=79 Score=33.78 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=42.1
Q ss_pred CeEEEEEccCC--ceeeeeeeecc----ccCCeeEEEEc---CC---CCeEEEEEecCCCcEEEEeCCCCceEEEe
Q 001318 429 HIVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 492 (1101)
Q Consensus 429 ~~i~iwd~~~~--~~~~~~~~l~~----h~~~V~~~~~s---~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 492 (1101)
-.|.+||+.++ +.++.. .+.. ....+..+++. ++ +.....++-+...-|.|+|+.+++.-+.+
T Consensus 123 pkLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp CEEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 35788899988 766543 3321 23468888887 22 12325566667788999999999876655
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.20 E-value=81 Score=38.86 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=47.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcCCCCC---CCcCeEEEcc-CCCEEEEE---eCCCcEEEEEec
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 635 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-~~~~l~~~---~~dg~i~iw~~~ 635 (1101)
.+.++...++..++++.+.|+++|+|++.+++++.+....... .........+ .+.++.+- ..+|..++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 4556677788889999999999999999999999887542211 1112233444 33443332 245777888664
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.42 E-value=99 Score=33.28 Aligned_cols=202 Identities=11% Similarity=0.085 Sum_probs=90.0
Q ss_pred CcEEEEEeccCeEEEEEeec----ceEeeeecCcccCeeEEEEcC--CCCEEEEEeCCC----ceEEEeCCCccccccee
Q 001318 859 NNIIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRF 928 (1101)
Q Consensus 859 ~~~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s~--dg~~l~s~s~D~----~v~iwd~~~~~~~~~~~ 928 (1101)
...|.+|+..| +.+++... .+..... .....|.+|++.| ++.+.+. +..+ .|...+ +.++. ...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~t--W~~ 95 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGGN--WTE 95 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTSC--CEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCCC--ceE
Confidence 34566677776 55555432 2222111 1235699999998 4555544 3333 333322 22221 111
Q ss_pred eecCCCCCC--------CCCCCeEEEEcC---CCcEEEEEeCCeEEEEEcCC--ceeeeecc--C------------CCC
Q 001318 929 LQIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTK--LECVKQWV--P------------RES 981 (1101)
Q Consensus 929 ~~~~~~~~~--------~~~~v~~~~~s~---dg~~la~~~d~~v~vwd~~~--~~~~~~~~--~------------~~h 981 (1101)
+....+... ....|.++++.| .+..++.+..+.|...+-.. -+.+.... . ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 111000000 012467788986 45555545666655443221 12221110 0 011
Q ss_pred CCCeeEEEEcCC-CCEEEEEEcCCeEEEEEcCCceeeeecCC---CcccCCCCC--CCCccceEEEEeCCCCCEEEEEec
Q 001318 982 SAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLS 1055 (1101)
Q Consensus 982 ~~~i~~l~~spd-g~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~--~~~v~~~~i~~~~~d~~~l~s~~~ 1055 (1101)
...+.+|.+.|. ...|+.+..++.|...+ +.|+.-..+.. ..+++.... ...+. .+.+.|.++..|..+..
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~--~i~~~~~~~~~l~vg~~ 252 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPH--CVVQHPAAPDILYQQNH 252 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEE--EEEECSSSTTEEEEEET
T ss_pred CCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCccee--EEEECCCCCCEEEEEcC
Confidence 346889999983 44455555555544432 33333222221 111221100 01133 78888866677777765
Q ss_pred CCcEEEEeccCCCcccc
Q 001318 1056 DGGVHVFEPLESEGKWG 1072 (1101)
Q Consensus 1056 dg~v~vW~~~~~~~~~~ 1072 (1101)
.| ||...++..+|.
T Consensus 253 ~g---l~~s~D~G~tW~ 266 (394)
T 3b7f_A 253 CG---IYRMDRREGVWK 266 (394)
T ss_dssp TE---EEEEETTTTEEE
T ss_pred Ce---EEEeCCCCCcce
Confidence 44 333334444443
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.93 E-value=99 Score=31.37 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=72.9
Q ss_pred CCCCeeEEEEec-CCCEEEEEe-CCeEEEEECCCCc------eeeEecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEE
Q 001318 804 PEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 875 (1101)
Q Consensus 804 ~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd 875 (1101)
....|..+.... +..+++..+ +|.++-..+.... ....++ ....+..+.... +...|+..+..|.++.+.
T Consensus 66 ~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEE
Confidence 355566665421 467888888 8999999876543 111122 234566665555 556788888999998887
Q ss_pred eecc---------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCC
Q 001318 876 VRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 920 (1101)
Q Consensus 876 ~~~~---------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~ 920 (1101)
...- ...-.+.. ...|.++...+++..|+..+..|.++...+..
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 6431 11122332 35566666666677888999999999888754
No 364
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.69 E-value=28 Score=36.27 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred HHHHHHHhhcCCh---HHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhc-cccccccCHHHHH
Q 001318 25 MKYFEDEVHNGNW---DDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD-LKVFSTFNEELFK 100 (1101)
Q Consensus 25 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~-l~~l~~~~~~~~~ 100 (1101)
+.+|++.|-+|++ =||.+.+..+ |.-++..+++.+|+.+|.+- +.=|+.-+..---
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV--------------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH--------------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 7899999999999 6777655543 23334456777777777763 2222222444455
Q ss_pred HhhhhhcccCcchhhhhhccCCchHHHHHHHHHHhhcccCCccccccccCCCCChHHHHHHHHHhHHHHHHhc
Q 001318 101 EITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 173 (1101)
Q Consensus 101 ~L~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 173 (1101)
.|+.+|..- -...++.-..+++.+|++.+.. +|+ -.|.| ..+|+.|++|-...-
T Consensus 76 DL~~llvev-----y~~~~~~~~~~~~~rL~~L~~~-~~~------------~~p~r-~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVDT-----FRQAGQRVDGASRGKLLGCLRL-FQP------------GEPVR-KRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHHH-----HHHHTCCCCHHHHHHHHHHHTT-SCT------------TCHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHHh-CCC------------CCcHH-HHHHHHHHHHHhhcC
Confidence 677666531 1222333356677787777764 444 22333 789999999987743
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.12 E-value=1.3e+02 Score=31.50 Aligned_cols=158 Identities=8% Similarity=0.041 Sum_probs=91.5
Q ss_pred CCCeeEEEEec---CCCEEEEEe-CCeEEEEECCCCcee-------eEecCCCCCeEEEEEecCCCcEEEEEeccCeEEE
Q 001318 805 EEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 873 (1101)
Q Consensus 805 ~~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v 873 (1101)
...|.++..-+ +..+++..+ +|.++-..+...... ..++. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 45565554433 467888888 899998887653322 12332 34565555555 4567777889999988
Q ss_pred EEee--c---------ceEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-----cceeeecCCCCCC
Q 001318 874 YNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIPTGRTP 937 (1101)
Q Consensus 874 wd~~--~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~ 937 (1101)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-... ....+.....
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~--- 247 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR--- 247 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT---
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC---
Confidence 8776 2 11112232 2345777766666778999999999988876543221 1111221110
Q ss_pred CCCCCeEEE-EcCCCcEEEEEeCCeEEEEEcCC
Q 001318 938 TAQSDTRVQ-FHQDQIHFLVVHETQLAIFETTK 969 (1101)
Q Consensus 938 ~~~~v~~~~-~s~dg~~la~~~d~~v~vwd~~~ 969 (1101)
.+.+..+. ...+...++++.+|.+.-++...
T Consensus 248 -~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 -RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp -TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred -CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 02333333 33444455557777777776654
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=66.88 E-value=1.4e+02 Score=32.02 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=39.5
Q ss_pred CeEEEEEecCCCcEEEEEeccCeEEEEEeecc-e----------EeeeecCc-ccCeeEEEEcCCCCEEEEEeCCCceEE
Q 001318 848 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-E----------VKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCV 915 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~----------~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~D~~v~i 915 (1101)
.|..++... +..+.+.-..||.|+.|-.... + ....+..- ...|..|+... .+.+....||.|..
T Consensus 212 ~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~ 288 (389)
T 3kci_A 212 RVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYT 288 (389)
T ss_dssp CEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEE
T ss_pred eEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEE
Confidence 466666543 3345566678999999965431 1 11122211 12466666543 34444567899999
Q ss_pred EeCCC
Q 001318 916 WSSDG 920 (1101)
Q Consensus 916 wd~~~ 920 (1101)
|-...
T Consensus 289 wG~n~ 293 (389)
T 3kci_A 289 WGKGD 293 (389)
T ss_dssp EECCG
T ss_pred EeCCC
Confidence 97643
No 367
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.67 E-value=41 Score=34.80 Aligned_cols=110 Identities=12% Similarity=0.234 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhc-cccccccCHHHHHHhh
Q 001318 25 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD-LKVFSTFNEELFKEIT 103 (1101)
Q Consensus 25 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~-l~~l~~~~~~~~~~L~ 103 (1101)
..+|++.|-+|++=||.+.+..+ |.-++.++++.+|+.+|.+- +.=++.-+..---.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 77899999999999988866644 33344456777777777763 2222332444455666
Q ss_pred hhhcccCcchhhhhhccCCchHHHHHHHHHHhhcccCCccccccccCCCCChHHHHHHHHHhHHHHHHhc
Q 001318 104 QLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 173 (1101)
Q Consensus 104 ~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 173 (1101)
.++... -...++.-..+++.+|++.++. +|++ .+. ..++++.+++|-....
T Consensus 77 ~llvev-----~~~~~~~~~~~~~~rl~~l~~~-~p~~------------~~~-r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-----YDLAEVKVDDISVARLVRLIAE-LDPS------------EPN-LKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-----HHHTTCCCSHHHHHHHHHHHTT-CCTT------------CTT-HHHHHHHHHHHHHHTS
T ss_pred HHHHHH-----HHHcCCCCCHHHHHHHHHHHHH-CCCC------------Cch-HHHHHHHHHHHHhhcC
Confidence 666531 1112233356677888755554 4542 122 4889999999987744
No 368
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=54.31 E-value=2.1e+02 Score=29.78 Aligned_cols=248 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEE
Q 001318 355 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 434 (1101)
Q Consensus 355 pdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 434 (1101)
|+... +++-+.+|.|+--.+..-+......+++-+ .+.+..+........|+..+..|.+.-.
T Consensus 3 ~~e~~-~v~lT~~G~IKr~~~~~~~~~~~~~~~lke----------------~D~l~~~~~~~t~d~ll~fT~~Gr~~~~ 65 (323)
T 1wp5_A 3 ASEDV-IVTVTKDGYVKRTSLRSYAASNGQDFAMKD----------------TDRLLAMLEMNTKDVLLLFTNKGNYLYC 65 (323)
T ss_dssp SCCEE-EEEEETTCEEEEEEHHHHHHTTTCCCCCCT----------------TCCEEEEEEEETTSEEEEEETTSEEEEE
T ss_pred cCCcE-EEEEeCCCEEEEeEHHHhhhcCccccccCC----------------CCEEEEEEEECCCCEEEEEECCCEEEEE
Q ss_pred Ec---------cCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeC--------CCCceEEEecCc
Q 001318 435 SY---------HGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDA--------TNGAKQYIFEGH 495 (1101)
Q Consensus 435 d~---------~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~--------~~~~~~~~~~~h 495 (1101)
.. ..|..+.....+..-..-+..+.... ++. +++..+.+|.++...+ ..|.....+...
T Consensus 66 ~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~--~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~ 143 (323)
T 1wp5_A 66 PVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNG--YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND 143 (323)
T ss_dssp EGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSC--EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT
T ss_pred EHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCc--eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC
Q ss_pred ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCE
Q 001318 496 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 575 (1101)
Q Consensus 496 ~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1101)
+.+..+.. ..+.+.++..+.+|.+..+.... +.........+..+.+.++.. .+.+..+.++...
T Consensus 144 -d~lv~~~~--~~~~~~i~l~T~~G~~irf~~~e---v~~~gR~a~GV~~i~L~~~d~---------Vv~~~~~~~~~~~ 208 (323)
T 1wp5_A 144 -DQVVDVHL--TDGMNELFLVTHNGYALWFDESE---VSIVGVRAAGVKGMNLKEGDY---------IVSGQLITSKDES 208 (323)
T ss_dssp -CCEEEEEE--ECSCSEEEEEETTSEEEEEEGGG---SCBCCSSCCCEECCCCCTTCC---------EEEEEEECCTTCE
T ss_pred -CEEEEEEE--eCCCCEEEEEeCCCcEEEEEHHH---CcccCCCCcCEEEEEeCCCCE---------EEEEEEEcCCCcE
Q ss_pred EEEEeCCCcEEEEECCC-------CceeEEEcCCCCCC-CcCeEEEccCCCEEEEEeCCCcEEEEEecC
Q 001318 576 FLAAGDDFSIKFWDMDS-------VQLLTSIDADGGLP-ASPRIRFNKDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 576 l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
+++.+..|..+..++.. ++-+..+....... .+..+....++..++..+.+|.+.-..+..
T Consensus 209 ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 209 IVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
No 369
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=52.53 E-value=20 Score=34.05 Aligned_cols=96 Identities=8% Similarity=0.135 Sum_probs=63.8
Q ss_pred eehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHH-HHhhhhhcccCcchhhhhhccCCchHHHHHHHHHHhh
Q 001318 58 KIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELF-KEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKK 136 (1101)
Q Consensus 58 ~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~-~~L~~ll~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 136 (1101)
+++-+|.+|..+=.+++|++.+|..+|.+.+.. .. +...+ .+|..++-+.+ ..+..+.+. |-..++++|..
T Consensus 111 ~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~-~~-s~~kLr~kL~~II~~Kd-~~H~~lqnF-----Sy~~~~~ki~~ 182 (235)
T 3bu8_A 111 SSRKLVKEAAVIICIKNKEFEKASKILKKHMSK-DP-TTQKLRNDLLNIIREKN-LAHPVIQNF-----SYETFQQKMLR 182 (235)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-CG-GGHHHHHHHHHHHHHTC-TTSHHHHTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC-CC-CchHHHHHHHHHHhccC-cccHHHHhc-----cHHHHHHHHHH
Confidence 488899999999999999999999999987775 32 34434 46666666653 344554444 45666777777
Q ss_pred cccCCccccccccCCCCChHHHHHHHHHhHHHHHHhc
Q 001318 137 LIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLC 173 (1101)
Q Consensus 137 ~i~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~ 173 (1101)
|+..-.- .++. .||+.|.+-+.+.|
T Consensus 183 fve~~~~---------~a~~---FLL~~A~Kv~ks~~ 207 (235)
T 3bu8_A 183 FLESHLD---------DAEP---YLLTMAKKALKSES 207 (235)
T ss_dssp HHHTTSC---------CCCC---HHHHHHHHHTTTC-
T ss_pred HHHHHhc---------ccch---HHHHHHHHHHhhcc
Confidence 7665221 1122 57777777666655
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.67 E-value=2.2e+02 Score=29.31 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=100.1
Q ss_pred EEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEEEcc--
Q 001318 360 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-- 437 (1101)
Q Consensus 360 llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-- 437 (1101)
++++-+.+|.|+--.+.+-+...... .......+. ..+.+..+........|+..+..|.++-....
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~----------~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~el 73 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGG----------KGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 73 (307)
T ss_dssp EEEEEETTSEEEEEECC-------------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCC----------CCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHC
Confidence 47778888998876665432211100 000000112 23455566666667778888888886665542
Q ss_pred -C------CceeeeeeeeccccCCeeEEEEc---CCCCeEEEEEecCCCcEEEEeCCC-------CceEEEecCcccCeE
Q 001318 438 -G------GDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIKVWDATN-------GAKQYIFEGHEAPVY 500 (1101)
Q Consensus 438 -~------~~~~~~~~~l~~h~~~V~~~~~s---~d~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~h~~~v~ 500 (1101)
. |..+.....+. ....|.++... .++. +++..+.+|.++.-.+.. |.....+..+ +.+.
T Consensus 74 p~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~--~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv 149 (307)
T 1zi0_A 74 PEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGV--KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELI 149 (307)
T ss_dssp CCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEE
T ss_pred cCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCc--EEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEE
Confidence 2 11111111222 23445555432 2444 578888999999987642 2222223333 4454
Q ss_pred EEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcCCCCEEEEEe
Q 001318 501 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 580 (1101)
Q Consensus 501 ~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (1101)
.+... .. ...++..+.+|.+..+....-.. .......+..+.+.++. .+..+..-.++..+++.+
T Consensus 150 ~~~~~-~~-~~~i~l~T~~G~~irf~~~~v~~---~gr~a~Gv~~i~L~~~d----------~Vv~~~~~~~~~~ll~~T 214 (307)
T 1zi0_A 150 GVDLT-SG-EDEVMLFSAEGKVVRFKESSVRA---MGCNTTGVRGIRLGEGD----------KVVSLIVPRGDGAILTAT 214 (307)
T ss_dssp EEEEE-CT-TCEEEEEETTSEEEEEEGGGSCB---CCTTCCCEECCCCCTTC----------CEEEEECCCSSCEEEEEE
T ss_pred EEEEe-CC-CCEEEEECCCCcEEEEEHHHcCc---cCCCCCCeEeEEeCCCC----------EEEEEEEecCCCEEEEEE
Confidence 44432 22 24677777888887776643211 11112223333332222 222232223445688889
Q ss_pred CCCcEEEEECC
Q 001318 581 DDFSIKFWDMD 591 (1101)
Q Consensus 581 ~dg~i~iwd~~ 591 (1101)
..|.++-.++.
T Consensus 215 ~~G~~Kr~~~~ 225 (307)
T 1zi0_A 215 QNGYGKRTAVA 225 (307)
T ss_dssp TTSEEEEECGG
T ss_pred cCCceEEEEHH
Confidence 99998888763
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.44 E-value=34 Score=39.20 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCcEEEEEe-------------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 941 SDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~-------------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
..-.|+|+|.|.++++.. +..+.+.+..+++..+.+.. ....+++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 457899999999666521 12466777777777665543 2367999999999999887653
No 372
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=50.53 E-value=3.7e+02 Score=31.59 Aligned_cols=180 Identities=11% Similarity=0.020 Sum_probs=91.4
Q ss_pred CeEEEEECCCCc--eeeEecCCCCCe-EEEEEecCCCc-----EEEEEecc---CeEEEEEeec--ceEeeeecCcccCe
Q 001318 826 GKISLFNMMTFK--TMATFMPPPPAA-TFLAFHPQDNN-----IIAIGMDD---SSIQIYNVRV--DEVKSKLKGHSKRI 892 (1101)
Q Consensus 826 g~i~vwd~~~~~--~~~~~~~~~~~i-~~l~~sp~d~~-----~lasg~~d---g~v~vwd~~~--~~~~~~l~~h~~~V 892 (1101)
.+|+.|.+-+.. -...+.+....+ .....++ +++ .+++.+.+ ..+++.+... ++. ..+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--
Confidence 468889887642 233344443333 3344556 444 24443322 3556666543 332 22222222
Q ss_pred eEEEEcCCCCEEEEEe----------CCCceEEEeCCCccc-----ccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEE
Q 001318 893 TGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 957 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s----------~D~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 957 (1101)
..+..+.++.+++... ..+.|.+.++.++.. .....+-.... ...+..+.+..+.-++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA----NEVFNFISTTKDRVFLATY 367 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT----TEEEEEEEECSSCEEEEEE
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC----CCeEEEEEEECCEEEEEEE
Confidence 1233455666666332 356788898877431 11111111111 1356788888774333334
Q ss_pred eCC--eEEEEEcCCce-eeee-ccCCCCCCCeeEEEEcCCCCEE-EEEEc---CCeEEEEEcCCce
Q 001318 958 HET--QLAIFETTKLE-CVKQ-WVPRESSAPITHATFSCDSQLV-YACFL---DATVCVFSAANLK 1015 (1101)
Q Consensus 958 ~d~--~v~vwd~~~~~-~~~~-~~~~~h~~~i~~l~~spdg~~l-~s~s~---dg~v~vwd~~~~~ 1015 (1101)
.++ .+.++|+.++. .... +.... .+.+....+++++..+ ++.+. -+.+..+|+. ++
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 565 57788877664 2222 22211 2457667777877644 44432 3568888877 54
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.94 E-value=45 Score=37.65 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCcEEEEEe-------------CCeEEEEEcCCceeeeeccCCCCCCCeeEEEEcCCCCEEEEEE
Q 001318 940 QSDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1001 (1101)
Q Consensus 940 ~~v~~~~~s~dg~~la~~~-------------d~~v~vwd~~~~~~~~~~~~~~h~~~i~~l~~spdg~~l~s~s 1001 (1101)
.....|+|+++|.+.++.. ...+..++..+++....+.. .....++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 3567899999999877421 12677778877876655431 1246799999999999887664
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.01 E-value=47 Score=38.68 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=30.9
Q ss_pred CeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCC
Q 001318 984 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1022 (1101)
Q Consensus 984 ~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 1022 (1101)
.|.++.+ +..+|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555555 578999999999999999999999887664
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.44 E-value=14 Score=46.81 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=35.0
Q ss_pred CCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCceeeeecCCCc
Q 001318 983 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1024 (1101)
Q Consensus 983 ~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 1024 (1101)
..+.+++..++..+|++-+.|+++|||++.+++++.......
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 355666777899999999999999999999999988766433
No 376
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=42.70 E-value=4.1e+02 Score=29.87 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=28.1
Q ss_pred ccCCeeEEEEcCCCCeEEEEEecCCCc----------------------------EEEEeCCCCceEEEec
Q 001318 451 HVGGVNDIAFSHPNKQLCVITCGDDKT----------------------------IKVWDATNGAKQYIFE 493 (1101)
Q Consensus 451 h~~~V~~~~~s~d~~~~~l~s~~~d~~----------------------------i~iwd~~~~~~~~~~~ 493 (1101)
|-..+....|.-||+. -++....+++ +.|+|=.+|+.+.++.
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTAN 246 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEE
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEeccc
Confidence 5556777777777776 3444444443 7888888888877653
No 377
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.74 E-value=36 Score=30.91 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=15.4
Q ss_pred HHHHHhcCCCHHHHHHHHHh
Q 001318 67 KYLEALDKHDRAKAVEILVK 86 (1101)
Q Consensus 67 ~~lEll~~~~~~~Al~~L~~ 86 (1101)
..-|++..++..+|.+|+++
T Consensus 15 lL~EY~~~~D~~EA~~cl~E 34 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKE 34 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 34567778899999999885
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=39.00 E-value=3.5e+02 Score=28.05 Aligned_cols=204 Identities=11% Similarity=0.106 Sum_probs=107.1
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEE---ECCCC------ceeeE-ec-CCCCCeEEEEEecC--CCcEEEEEeccCe
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLF---NMMTF------KTMAT-FM-PPPPAATFLAFHPQ--DNNIIAIGMDDSS 870 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vw---d~~~~------~~~~~-~~-~~~~~i~~l~~sp~--d~~~lasg~~dg~ 870 (1101)
.+.+..+........++.-+ .|.++-. ++... ..+.. +. .....|.++..-++ +..+++..+.+|.
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 34455555444444555444 6775544 44322 22111 11 12345666544331 3678999999999
Q ss_pred EEEEEeecce-------EeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCC--C----ccc-ccceeeecCCCCC
Q 001318 871 IQIYNVRVDE-------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD--G----WEK-QKNRFLQIPTGRT 936 (1101)
Q Consensus 871 v~vwd~~~~~-------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~--~----~~~-~~~~~~~~~~~~~ 936 (1101)
|+--.+.... ....++. .+.+..+........|+..+..|.+..+.+. . +.. .....+....+
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~-- 197 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID-- 197 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTT--
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCC--
Confidence 9998876532 2223333 3445555555556678888888988777766 2 111 11112222222
Q ss_pred CCCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCcee-------eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEE
Q 001318 937 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1008 (1101)
Q Consensus 937 ~~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~-------~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~v 1008 (1101)
..|.++...+++.+++. +..|.++.-.+..... +..+....-.+.+..+....+...++..+.+|.+.-
T Consensus 198 ---d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 198 ---DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp ---CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred ---CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 34566655555544444 7888888776543222 222222111234444444444455666677787777
Q ss_pred EEcCCc
Q 001318 1009 FSAANL 1014 (1101)
Q Consensus 1009 wd~~~~ 1014 (1101)
++...-
T Consensus 275 ~~~~~i 280 (327)
T 3uc1_A 275 TAARQV 280 (327)
T ss_dssp EEGGGS
T ss_pred Eehhhc
Confidence 776543
No 379
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.97 E-value=39 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=15.2
Q ss_pred HHHHHhcCCCHHHHHHHHHh
Q 001318 67 KYLEALDKHDRAKAVEILVK 86 (1101)
Q Consensus 67 ~~lEll~~~~~~~Al~~L~~ 86 (1101)
..-|++..++..+|.+|+++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 34566777888888888885
No 380
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=38.34 E-value=4.7e+02 Score=29.36 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=93.2
Q ss_pred CCCCcEEEEEecCCCeEEEEEecCCc----------------------------EEEEeCCCcceeEeeeeeeeecCCCC
Q 001318 344 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 395 (1101)
Q Consensus 344 h~~~v~~~~~spdg~~llatg~~dg~----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 395 (1101)
|-..+....|.-||+.=++..+.+|+ +.|+|-.||+.+...++..-. ..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~r---g~ 253 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPAR---GN 253 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCC---CC
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCC---Cc
Confidence 55667788888888755777766665 788888888887654331000 00
Q ss_pred ccccc-ccccCCCCC--eEEEEEecCCC--eEEEEE---cCCeEEEEEccCCceeeeeeeeccc-----------cCCee
Q 001318 396 MPLQA-ALVKDPGVS--VNRVIWSPDGS--LFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAH-----------VGGVN 456 (1101)
Q Consensus 396 ~~~~~-~~~~~h~~~--V~~l~~spdg~--~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h-----------~~~V~ 456 (1101)
... ---.++... ..++++- ||+ .++.+- ....|..||..+++... ...+... ...+.
T Consensus 254 --~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~ 329 (591)
T 2zux_A 254 --VSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLS 329 (591)
T ss_dssp --GGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCE
T ss_pred --ccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCe
Confidence 000 000001000 1122221 221 223221 12347777777665322 1112110 02344
Q ss_pred EEEEcCCCCeEEEEEecCCCcEEEEeCCCCceEEEe-cCcccCeEEEeeeecCCccEEEEEecCC----cEEEEecCCCC
Q 001318 457 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNLG 531 (1101)
Q Consensus 457 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~ 531 (1101)
-..+.-||+. -|+.|+. +.| .+|+.+... .+|...+....|.++..|..++.+..++ -..+.|..+++
T Consensus 330 vaDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 330 IADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp EECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred eEeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 4556667776 4555552 344 455555444 3688887777776666566777776652 24456777777
Q ss_pred ceeeec
Q 001318 532 SRVDYE 537 (1101)
Q Consensus 532 ~~~~~~ 537 (1101)
.+....
T Consensus 403 vlw~~~ 408 (591)
T 2zux_A 403 ILWGVY 408 (591)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 766554
No 381
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=38.33 E-value=40 Score=27.55 Aligned_cols=70 Identities=7% Similarity=0.071 Sum_probs=41.5
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhcc--ccccccCHHHHHHhhhhh
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDL--KVFSTFNEELFKEITQLL 106 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l--~~l~~~~~~~~~~L~~ll 106 (1101)
-....|+|++|+..+.+...+.... . ..+..+=+.| ...|+.++|+..+++-+ .| ..-+.....+|..+|
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~-~--~a~~~lg~~~---~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDY-V--GTYYHLGKLY---ERLDRTDDAIDTYAQGIEVAR-EEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC-T--HHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-H--HHHHHHHHHH---HHcCCHHHHHHHHHHHHhhhh-cCCchhHHHHHHHHH
Confidence 3466899999999999864443332 1 1222223333 34799999999999843 33 222444455554444
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.21 E-value=3.5e+02 Score=27.80 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=110.8
Q ss_pred cCccceeeccCCCcceeeeccccCCCcc----ccccccCccccccceEEEEEcCCCceEEeeecCceEEeeeccccccCC
Q 001318 699 ADVKPRITEESNDKSKVWKLTELSEPNQ----CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 774 (1101)
Q Consensus 699 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 774 (1101)
++...+++.+.+|.|+--.+........ ...+.+. ....+..+........++..+..|.++-+.... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~--ip~ 80 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYE--IKD 80 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG--SCC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH--CCC
Confidence 3456788888899998877765432211 1111111 234455555555556677788887766544321 000
Q ss_pred CCceeeeecCccccCCCccccccccCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEECCCCc-------eeeEec
Q 001318 775 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFK-------TMATFM 843 (1101)
Q Consensus 775 ~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~-------~~~~~~ 843 (1101)
.+ .. ..|..+...+. ......|.++...+ +..+++..+ .|.++...+.... ....+.
T Consensus 81 ~~-r~----------~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 81 SS-RA----------SKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp ------------------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred CC-cc----------CCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 00 00 11221111111 11344555554433 456666666 8998888875432 222233
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeecc---------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceE
Q 001318 844 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 914 (1101)
Q Consensus 844 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~ 914 (1101)
. ...+..+.... +...++..+.+|.+..+....- .....+.. .+.|.++..-.++..|++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceE
Confidence 2 45566665554 5567888899999999987541 12222332 34566666655667788889999988
Q ss_pred EEeCCC
Q 001318 915 VWSSDG 920 (1101)
Q Consensus 915 iwd~~~ 920 (1101)
...+..
T Consensus 226 r~~~~e 231 (312)
T 1suu_A 226 RLNMSK 231 (312)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 888754
No 383
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.16 E-value=51 Score=41.73 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=32.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 563 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 563 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
.+.+++..++..++++.+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344556667788999999999999999999999988764
No 384
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.94 E-value=3.4e+02 Score=27.30 Aligned_cols=205 Identities=10% Similarity=0.039 Sum_probs=107.7
Q ss_pred CeEEEEEecCCCcEEEEEeccCeEEE---EEeecceEeeeecCcccCeeEEEEcC-CCCEEEEEeCCCceEEEeCCCcc-
Q 001318 848 AATFLAFHPQDNNIIAIGMDDSSIQI---YNVRVDEVKSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWE- 922 (1101)
Q Consensus 848 ~i~~l~~sp~d~~~lasg~~dg~v~v---wd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~D~~v~iwd~~~~~- 922 (1101)
.+..+.... ...+|+.-+++|.++- |++..++-...+. ....|.++.... +..+++.++.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 444444333 3345555666776654 3333221111133 345566664421 56799999999999998876532
Q ss_pred -cccceeeecCCCCCCCCCCCeEEEEcCCCc-EEEEEeCCeEEEEEcCCcee-------eeeccCCCCCCCeeEEEEcCC
Q 001318 923 -KQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCD 993 (1101)
Q Consensus 923 -~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~la~~~d~~v~vwd~~~~~~-------~~~~~~~~h~~~i~~l~~spd 993 (1101)
......+....+ ..+..+....+.. .++.+..|.+..+....-.. +..+.... ...|.++...++
T Consensus 103 ~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESS
T ss_pred hcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCC
Confidence 111112222222 2445554444444 44447888888777543211 11122222 456777666666
Q ss_pred CCEEEEEEcCCeEEEEEcCCceeeeecCCC-cccCCCCCCCCccceEEEEeCCCCCEEEEEecCCcEEE--EeccC
Q 001318 994 SQLVYACFLDATVCVFSAANLKLRCRINPS-AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV--FEPLE 1066 (1101)
Q Consensus 994 g~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~i~~~~~d~~~l~s~~~dg~v~v--W~~~~ 1066 (1101)
+..|+..+..|.++...+..-....+-... ..+.. +..+. .+.... +.+.++..+.+|.+.. +++.+
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGT---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCS---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcC---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 778888999999999887654333221000 00011 11122 333322 3346777778888887 77754
No 385
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.18 E-value=4.3e+02 Score=27.95 Aligned_cols=252 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCCcEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEEEEEcCCeEEEE
Q 001318 355 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 434 (1101)
Q Consensus 355 pdg~~llatg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iw 434 (1101)
|+..+ +++.+.+|.|+--.+.+-+.... ...-....-....+.+..+........|+..+..|.++-+
T Consensus 5 ~~e~~-~v~lT~~GyIKr~~l~~y~~~~r-----------~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~ 72 (370)
T 3l6v_A 5 APEDV-VVTLSHAGYAKRQPVSAYRAQRR-----------GGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWL 72 (370)
T ss_dssp CCCCE-EEEEESSCEEEEEEHHHHHHTCC-----------CCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred cCCCE-EEEEeCCCEEEEeeHHHhhhhcc-----------CCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEE
Q ss_pred E---------ccCCceeeeeeeeccccCCeeEEEEcC--CCCeEEEEEecCCCcEEEEeC-------CCCceEEEecCcc
Q 001318 435 S---------YHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDA-------TNGAKQYIFEGHE 496 (1101)
Q Consensus 435 d---------~~~~~~~~~~~~l~~h~~~V~~~~~s~--d~~~~~l~s~~~d~~i~iwd~-------~~~~~~~~~~~h~ 496 (1101)
. ...|..+.....+.....-+..+.... ++. +|+.++..|.++...+ ..|.....+.. .
T Consensus 73 ~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~--~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~ 149 (370)
T 3l6v_A 73 PVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNR--YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-G 149 (370)
T ss_dssp EGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-T
T ss_pred EHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCc--EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-C
Q ss_pred cCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceEEeccccCceeEEEEcC-----
Q 001318 497 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----- 571 (1101)
Q Consensus 497 ~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~----- 571 (1101)
+.+..+.. ..+...++..+.+|.+..+.... +..+.-...|-+.+.-..+..+..+...+
T Consensus 150 d~lv~v~~--~~~~~~i~l~T~~G~~irf~~~~-------------v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ 214 (370)
T 3l6v_A 150 DALVGVAL--TDGDRDVLLFASNGKTVRFGEST-------------VRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGV 214 (370)
T ss_dssp CCEEEEEE--ECSCCEEEEEETTSEEEEEEGGG-------------SCBCCTTCCCEECCCCCTTCCEEEEEEECCC---
T ss_pred CEEEEEEE--eCCCceEEEEeCCCeEEEEEccc-------------cCccCCCCCCeeeEEeCCCCEEEEEEEecccccc
Q ss_pred ------------------------------CCCEEEEEeCCCcEEEEEC-------CCCceeEEEcCCCCCCCcCeEEEc
Q 001318 572 ------------------------------TKNRFLAAGDDFSIKFWDM-------DSVQLLTSIDADGGLPASPRIRFN 614 (1101)
Q Consensus 572 ------------------------------~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~~~~~~~~~v~~~~~s 614 (1101)
.+..+++.+..|..+...+ +.++-+..++.......+..+.+.
T Consensus 215 ~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v 294 (370)
T 3l6v_A 215 EDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLL 294 (370)
T ss_dssp --------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEe
Q ss_pred cCCCEEEEEeCCCcEEEEEecC
Q 001318 615 KDGCLLAVSTNDNGIKILATSD 636 (1101)
Q Consensus 615 ~~~~~l~~~~~dg~i~iw~~~~ 636 (1101)
.+...++..+..|.+.-..+..
T Consensus 295 ~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 295 GSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CTTCEEEEEETTCCEEEEEGGG
T ss_pred CCCceEEEEcCCCeEEEeeHhh
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=33.53 E-value=1.9e+02 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.469 Sum_probs=27.5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEcC
Q 001318 571 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 601 (1101)
Q Consensus 571 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 601 (1101)
.+..++++-+.|.++|+|++.+++++.....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3467999999999999999999999888775
No 387
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.65 E-value=56 Score=28.15 Aligned_cols=72 Identities=7% Similarity=0.018 Sum_probs=41.1
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcc
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 108 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~ 108 (1101)
.....|+|++|+..+.+...+.... . .++-..=.=++..|+..+|+..+.+-+.- ...+.+-+..|+.++..
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~----~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPEN----A--ILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC----H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC----H--HHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHH
Confidence 3567888888888887753333221 1 11112222234568888888888875432 22355666666665543
No 388
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.32 E-value=67 Score=30.12 Aligned_cols=94 Identities=10% Similarity=0.117 Sum_probs=59.0
Q ss_pred HHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcccCcchhhhhh
Q 001318 39 DVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS 118 (1101)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~ 118 (1101)
.|+..+..+..-.+ ....+++-+|.+|..+=.+++|++.+|..+|++.+..-.. +...-.+|..++-+.+. .+..++
T Consensus 96 SAl~v~~~I~~e~~-~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~-~~~lr~kL~~II~~Kd~-~H~~lq 172 (211)
T 3bqo_A 96 SALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNS-HMPFKSKLLMIISQKDT-FHSFFQ 172 (211)
T ss_dssp HHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCTTHHHHHHHHHTTCT-TCHHHH
T ss_pred HHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCC-chHHHHHHHHHHHccCC-CcHHHH
Confidence 56777777733332 3444588899999999999999999999999987665222 33344466666666533 444444
Q ss_pred ccCCchHHHHHHHHHHhhcccC
Q 001318 119 KYGDTKSARSIMLVELKKLIEA 140 (1101)
Q Consensus 119 ~~~~~~~~r~~l~~~l~~~i~~ 140 (1101)
+. |-..++++|..++..
T Consensus 173 nF-----Sy~~~~~kik~fve~ 189 (211)
T 3bqo_A 173 HF-----SYNHMMEKIKSYVNY 189 (211)
T ss_dssp HS-----CHHHHHHHHHHHHHH
T ss_pred Hc-----cHHHHHHHHHHHHHH
Confidence 33 334555555555543
No 389
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=31.74 E-value=19 Score=32.69 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=41.4
Q ss_pred hhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccc
Q 001318 32 VHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVF 91 (1101)
Q Consensus 32 i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l 91 (1101)
+|..-|+...+.+.--..-|+.+++. +.++|.+..+|++++.|++.+|+..|+++-..|
T Consensus 69 fl~~Tw~~~~~~lgl~~F~P~~QD~~-A~~Li~~rgal~~i~~G~i~~a~~~la~~WASL 127 (158)
T 1am7_A 69 LLSRXXDAYRKQLGLKDFSPKSQDAV-ALQQIKERGALPMIDRGDIRQAIDRCSNIXASL 127 (158)
T ss_dssp BCHHHHHHHHHHHTCCCCCHHHHHHH-HHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTS
T ss_pred hhHHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHHcCcHHHHHcCCHHHHHHHhccccccC
Confidence 34445776666554212223333444 889999999999999999999999999875554
No 390
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=30.67 E-value=1.5e+02 Score=26.16 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHhHhcCcccc--HHHH---HHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHH
Q 001318 4 LSRELVFLILQLEQESGFFFN--MKYF---EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRA 78 (1101)
Q Consensus 4 ~~~e~vrli~ql~~esg~~~~--~~~~---~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~ 78 (1101)
-+.|+=+-|..+++-.-..-+ +..| +-....|+|++|+.++.+...+.... . -.+..+=.. +...|+.+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~--~a~~~lg~~---~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-P--KAHRFLGLL---YELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-H--HHHHHHHHH---HHHTTCHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H--HHHHHHHHH---HHHcCchH
Confidence 356666666665554443332 1111 23467899999999999864444332 1 112222222 33479999
Q ss_pred HHHHHHHhccccccccCHHHHHHhhhhhcc
Q 001318 79 KAVEILVKDLKVFSTFNEELFKEITQLLTL 108 (1101)
Q Consensus 79 ~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~ 108 (1101)
+|+..+++-+.- ...+.+-+..|+.++..
T Consensus 83 ~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 83 KAVECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 999999985432 22467888888877654
No 391
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.01 E-value=2e+02 Score=32.46 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCeeEEEEecCCCEEEEEeC-------------CeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCcEEEEE
Q 001318 806 EAVPCFALSKNDSYVMSASG-------------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 806 ~~i~~~~~s~dg~~la~~sd-------------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg 865 (1101)
.....|+|+++|.+.+.... +.|..++..+++..+.+.+. ..+++.++|+| |++.|.++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 44677999999987764331 15777777778776666543 45789999999 77777665
No 392
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.89 E-value=9.7 Score=31.92 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=25.7
Q ss_pred HhHhcCccccHHHHHHHhhcCChHHHHHHhccc
Q 001318 15 LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47 (1101)
Q Consensus 15 l~~esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 47 (1101)
+-+|||+.+++..+-.-| +|+||++.+.+..+
T Consensus 41 vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 41 KISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 445899999877776665 49999999998876
No 393
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=25.55 E-value=92 Score=26.46 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=44.1
Q ss_pred HHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhc--cccccccCHHHHHHhhhhh
Q 001318 29 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLL 106 (1101)
Q Consensus 29 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~--l~~l~~~~~~~~~~L~~ll 106 (1101)
...+..|+|++|+..+.....+.... .. +.| .+=..| ...|+.++|+..+++- +.| .+.+-+..|+.++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~-~~-a~~-~lg~~~---~~~g~~~~A~~~~~~al~l~P---~~~~~~~~la~~~ 95 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER-EE-AWR-SLGLTQ---AENEKDGLAIIALNHARMLDP---KDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC-HH-HHH-HHHHHH---HHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC-HH-HHH-HHHHHH---HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence 45678999999999999864443332 11 222 222233 3479999999999984 444 3555566666555
Q ss_pred c
Q 001318 107 T 107 (1101)
Q Consensus 107 ~ 107 (1101)
.
T Consensus 96 ~ 96 (121)
T 1hxi_A 96 T 96 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 394
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=24.33 E-value=8e+02 Score=27.63 Aligned_cols=132 Identities=9% Similarity=0.038 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCcEEEEEeCCeEEEEEcCCceeeeeccCCCC-CCCeeEEEEcCCCCEEEEEEc--------------CCe
Q 001318 941 SDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFL--------------DAT 1005 (1101)
Q Consensus 941 ~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~i~~l~~spdg~~l~s~s~--------------dg~ 1005 (1101)
.+....-.++|.++.. ....+..+|.. ++.+..+....+ ...-..+...|+|..|+.+.. +..
T Consensus 208 ~l~~~~g~~nG~l~~g-~G~~i~elD~~-Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~ 285 (571)
T 3elq_A 208 YLMGIRETPRGTFTAV-QGQHWYEFDMM-GQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDH 285 (571)
T ss_dssp CCEEEEECTTSCEEEE-EBTEEEEECTT-CCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCE
T ss_pred eEEEEEecCCCCEEEe-cCcEEEEECCC-CcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccE
Confidence 3445555677776554 22456666764 444444332221 112244667889998876532 335
Q ss_pred EEEEEcCCceeeeecCCCcccCC-----------------------C------------------CCCCCccceEEEEeC
Q 001318 1006 VCVFSAANLKLRCRINPSAYLPA-----------------------G------------------VSSSNVHPLVIAAHP 1044 (1101)
Q Consensus 1006 v~vwd~~~~~~~~~~~~~~~~~~-----------------------~------------------~~~~~v~~~~i~~~~ 1044 (1101)
|...| .+|+.+.......++.. | ....+...-++.+.+
T Consensus 286 I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~ 364 (571)
T 3elq_A 286 ILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDA 364 (571)
T ss_dssp EEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEET
T ss_pred EEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcC
Confidence 66677 78888775543222210 0 001223345888988
Q ss_pred CCCCEEEEEecCCcEEEEeccCCCccccCCCCC
Q 001318 1045 QEPNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1077 (1101)
Q Consensus 1045 ~d~~~l~s~~~dg~v~vW~~~~~~~~~~~~~~~ 1077 (1101)
.|+++|+++-.- .|..-+- +++-.|.+..+.
T Consensus 365 ~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 365 KDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 665677776655 6666664 777777776654
No 395
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=23.85 E-value=1.7e+02 Score=33.41 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=40.9
Q ss_pred CeeEEEEecCCCEEEEEe-C------------CeEEEEECCCCceeeEecCC-CCCeEEEEEecCCCcEEEEE
Q 001318 807 AVPCFALSKNDSYVMSAS-G------------GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIG 865 (1101)
Q Consensus 807 ~i~~~~~s~dg~~la~~s-d------------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg 865 (1101)
..-.|+|+++|.+++.-. + +.+.+.+..+++..+-+.++ ..+++.++|+| |++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 456799999999665543 1 13566677777777666655 46799999999 77766654
No 396
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=23.81 E-value=1.2e+02 Score=25.49 Aligned_cols=72 Identities=7% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcc
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 108 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~ 108 (1101)
.....|+|++|+.++.......... ..++...=.-++..++.++|+.++++-+.- ...+...+..|+.+...
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHH
Confidence 4567999999999999864433221 112222222345689999999999985442 22355566666655543
No 397
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.49 E-value=3.2e+02 Score=22.78 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=40.5
Q ss_pred eEEEEcCCCCEEEEEeCCCceEEEeCCCcccccceeeecCCCCCCCCCCCeEEEEcCCCcEEEEEeCCeEEEEEcCCcee
Q 001318 893 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 972 (1101)
Q Consensus 893 ~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~v~vwd~~~~~~ 972 (1101)
..+.+..||.+++... ++ +|...+... ..-..+.+..+|.+++...++...+|...+..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~~- 80 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVYPRSV- 80 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEESSSC-
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEecccc-
Confidence 4566667777666432 22 777554210 01245677788887766444444466433210
Q ss_pred eeeccCCCCCCCeeEEEEcCCCCEEEE
Q 001318 973 VKQWVPRESSAPITHATFSCDSQLVYA 999 (1101)
Q Consensus 973 ~~~~~~~~h~~~i~~l~~spdg~~l~s 999 (1101)
........+.+-+||.+++-
T Consensus 81 -------~~~~~~~~l~Lq~dGNlvly 100 (111)
T 3mez_A 81 -------NTVRGNYAATLGPDQHVTIY 100 (111)
T ss_dssp -------CCCSSCCEEEECTTSCEEEE
T ss_pred -------CCCCcCEEEEECCCCeEEEe
Confidence 01122345566666666554
No 398
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=23.44 E-value=39 Score=25.77 Aligned_cols=20 Identities=5% Similarity=-0.137 Sum_probs=16.3
Q ss_pred cchhHHHHHHHHHhHhcCcc
Q 001318 3 SLSRELVFLILQLEQESGFF 22 (1101)
Q Consensus 3 ~~~~e~vrli~ql~~esg~~ 22 (1101)
..|+|+|.+++|+|.|-...
T Consensus 14 ltreELi~l~lk~~~~l~~k 33 (75)
T 3tso_C 14 LTYEEVLQELVKHKELLRRK 33 (75)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 46899999999988876655
No 399
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.88 E-value=6.9e+02 Score=26.38 Aligned_cols=202 Identities=10% Similarity=0.141 Sum_probs=95.3
Q ss_pred cCCCeEEEEEcCCeEEEEEccCCce--------eeeeeeecc-ccCCeeEEEEcCCCCeEEEEEecCCCcEEEEeCCCC-
Q 001318 417 PDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG- 486 (1101)
Q Consensus 417 pdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~-h~~~V~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~- 486 (1101)
-.....+.-..||.|..|-...... ......+.. ....+..++.+.... ..+.-..||.|+.|-....
T Consensus 60 ~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~--h~~al~~~G~v~~wG~n~~G 137 (389)
T 3kci_A 60 GGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK--HCLALSSEGEVYSWGEAEDG 137 (389)
T ss_dssp EETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS--EEEEEETTSCEEEEECCGGG
T ss_pred eCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC--eEEEEcCCCCEEEEeCCCCC
Confidence 3355566667888888886442111 111111221 122455566665555 3455567899999964321
Q ss_pred c----------eEEEecCc-ccCeEEEeeeecCCccEEEEEecCCcEEEEecCCCCceeeecCCCCceeEEEEccCCceE
Q 001318 487 A----------KQYIFEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 555 (1101)
Q Consensus 487 ~----------~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 555 (1101)
+ ....+... ...|..++. .. ...+....||.|..|-.....+.-.-. .... ..| ..
T Consensus 138 qLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~-~hs~alt~~G~v~~wG~n~~GqLG~~~--~~~~----~~p---~~ 204 (389)
T 3kci_A 138 KLGHGNRSPCDRPRVIESLRGIEVVDVAA---GG-AHSACVTAAGDLYTWGKGRYGRLGHSD--SEDQ----LKP---KL 204 (389)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEE---CS-SEEEEEETTSCEEEEECCGGGTTCSSS--CCCE----EEE---EE
T ss_pred cCCCCCCccCcCCeEecccCCCeEEEEEe---Cc-CeEEEEeCCCeEEEeCCCCCCCcCCCC--Cccc----ccc---eE
Confidence 0 11112211 124555542 22 355666779999999654322211000 0000 000 11
Q ss_pred EeccccCceeEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eeEEEcCCCCCCCcCeEEEccCCCEEEEEe
Q 001318 556 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-Q----------LLTSIDADGGLPASPRIRFNKDGCLLAVST 624 (1101)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 624 (1101)
+.......+..++......+.++...||.|+.|-.... + ....+..... ..| +.++....+.++-.
T Consensus 205 v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v--~~v~~G~~hs~alt 281 (389)
T 3kci_A 205 VEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGV--VKVECGSQFSVALT 281 (389)
T ss_dssp CGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCE--EEEEEETTEEEEEE
T ss_pred ecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcE--EEEeCCCCEEEEEe
Confidence 11111123333333332345666778999999965421 1 1111111111 123 33333445555667
Q ss_pred CCCcEEEEEecC
Q 001318 625 NDNGIKILATSD 636 (1101)
Q Consensus 625 ~dg~i~iw~~~~ 636 (1101)
.+|.|+.|-...
T Consensus 282 ~~G~v~~wG~n~ 293 (389)
T 3kci_A 282 KSGAVYTWGKGD 293 (389)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCeEEEEeCCC
Confidence 899999997543
No 400
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.84 E-value=6.2e+02 Score=25.79 Aligned_cols=202 Identities=8% Similarity=0.069 Sum_probs=99.7
Q ss_pred CCCeeEEEEecCCCEEEEEe-CCeEEEEECC---C------Cceee---EecCCCCCeEEEEEec--CCCcEEEEEeccC
Q 001318 805 EEAVPCFALSKNDSYVMSAS-GGKISLFNMM---T------FKTMA---TFMPPPPAATFLAFHP--QDNNIIAIGMDDS 869 (1101)
Q Consensus 805 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~---~------~~~~~---~~~~~~~~i~~l~~sp--~d~~~lasg~~dg 869 (1101)
.+.+..+........++..+ .|.++-+... . |..+. .+. ....|.++..-+ .+..+++..+.+|
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G 119 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANG 119 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 34444444444444455444 7876655542 2 22111 122 234566654321 1456788899999
Q ss_pred eEEEEEeecc-------eEeeeecCcccCeeEEEEcCCCCEEEEEeCCCceEEEeCCCcccc-----cceeeecCCCCCC
Q 001318 870 SIQIYNVRVD-------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIPTGRTP 937 (1101)
Q Consensus 870 ~v~vwd~~~~-------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~ 937 (1101)
.++--.+... .....+..+ +.+..+....+...|+..+.+|.+..++...-... ....+....+
T Consensus 120 ~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~--- 195 (307)
T 1zi0_A 120 TVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEG--- 195 (307)
T ss_dssp EEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT---
T ss_pred eEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCC---
Confidence 9999887532 222234444 55666555555567777888888877776431111 1112222222
Q ss_pred CCCCCeEEEEcCCCcEEEE-EeCCeEEEEEcCCcee-------eeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEE
Q 001318 938 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1009 (1101)
Q Consensus 938 ~~~~v~~~~~s~dg~~la~-~~d~~v~vwd~~~~~~-------~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vw 1009 (1101)
..|..+....++..+++ +..|.++-.++..-.. +..+....-.+.+-.+....+..-|+..+.+|.+.-+
T Consensus 196 --d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~ 273 (307)
T 1zi0_A 196 --DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRT 273 (307)
T ss_dssp --CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEE
T ss_pred --CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEE
Confidence 34555554444444444 6777777776633211 1111111112344444333333434445566665555
Q ss_pred EcCC
Q 001318 1010 SAAN 1013 (1101)
Q Consensus 1010 d~~~ 1013 (1101)
++..
T Consensus 274 ~~~~ 277 (307)
T 1zi0_A 274 RVSE 277 (307)
T ss_dssp EGGG
T ss_pred eccc
Confidence 5543
No 401
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=22.77 E-value=12 Score=31.57 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.1
Q ss_pred HhHhcCccccHHHHHHHhhcCChHHHHHHhccc
Q 001318 15 LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47 (1101)
Q Consensus 15 l~~esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 47 (1101)
+-+|||+.+++..+-..| +|+||++.+.+...
T Consensus 33 vl~~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 64 (109)
T 1yqh_A 33 VVQQSGVRYEVGAMETTL-EGELDVLLDVVKRA 64 (109)
T ss_dssp HHHHSCSEEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 344899999877766655 49999999998875
No 402
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.55 E-value=1.1e+02 Score=26.33 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=39.6
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhh
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 106 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll 106 (1101)
-....|+|++|+..+.+...+..... -.|.-+=.. +...|++++|+..+++-|.- ...+.+-...|..+|
T Consensus 56 ~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~lg~~---~~~~~~~~~A~~~~~~al~l-~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 56 CLTKLMEFQRALDDCDTCIRLDSKFI---KGYIRKAAC---LVAMREWSKAQRAYEDALQV-DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHC
T ss_pred HHHhhccHHHHHHHHHHHHHhhhhhh---HHHHHHHHH---HHHCCCHHHHHHHHHHHHHH-CcCCHHHHHHHHHhc
Confidence 44667888888888887544433321 111122222 34568888888888874322 223555555665544
No 403
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.43 E-value=1.2e+02 Score=26.27 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=45.6
Q ss_pred HHHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcc
Q 001318 29 EDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 108 (1101)
Q Consensus 29 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~ 108 (1101)
......|+|++|+.++.....+..... ....++...-.=++..+++++|+..+++-+.- ...+...+..++.++..
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHHHHHHH
Confidence 456789999999999998644332210 11222222222345689999999999875443 22245556666665543
No 404
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=22.25 E-value=8.8e+02 Score=27.38 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred cCCCeE------EEEEecCC-----cEEEEeCCCcceeEeeeeeeeecCCCCcccccccccCCCCCeEEEEEecCCCeEE
Q 001318 355 PVQQTL------LLVGTNVG-----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 423 (1101)
Q Consensus 355 pdg~~l------latg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 423 (1101)
|+|+.+ ++.|..|| .|..|+....+... ..+..+.+.-.+|.-||++|
T Consensus 109 p~g~t~~y~and~sVgDLDGDG~~EIVv~~d~~n~~d~s--------------------~~g~tg~~~l~aY~ldG~~L- 167 (620)
T 2zuy_A 109 PDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNA--------------------HDGYTGEVLIDAYKLDGTFL- 167 (620)
T ss_dssp TTSCEECEEEEEEEEECSSSSSSCEEEEEEEETTCCCTT--------------------SCCCCCCCEEEEECTTSCEE-
T ss_pred CCCcCcceecCCCeEEecCCCCCeEEEEEECCCcccccc--------------------ccccCCCcEEEEEECCCCEE-
Q ss_pred EEEcCCeEEEEEccCCceeeeeeeeccccCCeeEEEEcCCCCeEEEEEecCCCcE-------------------------
Q 001318 424 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI------------------------- 478 (1101)
Q Consensus 424 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~~~~s~d~~~~~l~s~~~d~~i------------------------- 478 (1101)
|.+.-+..++ ...|-..+....|.-||+. -++....++++
T Consensus 168 ----------W~idlg~Ni~----aGahyt~~~V~DlDGDGka-EIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ 232 (620)
T 2zuy_A 168 ----------WRINLGRNIR----AGAHYTQFMVYDLDGDGKA-EIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGP 232 (620)
T ss_dssp ----------EEEECCTTSC----CSTTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSC
T ss_pred ----------EEEcCCCCcc----cccccCceeEEEcCCCCcc-eEEEEccCCcccCcceeecccccccccccceEecCC
Q ss_pred ---EEEeCCCCceEEEecCcc----------------cCeEEEeeeecCCccEEEEEe---cCCcEEEEecCCCCceeee
Q 001318 479 ---KVWDATNGAKQYIFEGHE----------------APVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDY 536 (1101)
Q Consensus 479 ---~iwd~~~~~~~~~~~~h~----------------~~v~~v~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~ 536 (1101)
.|+|=.+|+.+.++.-.. .......-..+.+...++.+- .-..|..||++..+....+
T Consensus 233 eyL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W 312 (620)
T 2zuy_A 233 EYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRW 312 (620)
T ss_dssp CEEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEE
T ss_pred eEEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeee
Q ss_pred cCCC-------------CceeEEEEccCCc-----------------eEEeccccCceeEEEEcCC--CCEEEEEeCC--
Q 001318 537 EAPG-------------RWCTTMAYSADGT-----------------RTYQGFRKRSLGVVQFDTT--KNRFLAAGDD-- 582 (1101)
Q Consensus 537 ~~~~-------------~~v~~~~~s~~~~-----------------~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d-- 582 (1101)
.... +.+.-..+.-||+ ....-.+...+.+-.|.|+ |-.++.+.++
T Consensus 313 ~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs~~iD~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~ 392 (620)
T 2zuy_A 313 VFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDAT 392 (620)
T ss_dssp EEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETTEEECTTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTT
T ss_pred EecCCCCcccccccccCcCceEEecCCCCceeEEEeeeEECCCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCC
Q ss_pred --CcEEEEECCCCceeEEEcCCCCCCCcCeEEEccCCC
Q 001318 583 --FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 618 (1101)
Q Consensus 583 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 618 (1101)
....+.|..+|+.+.......+........|.|+..
T Consensus 393 ~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~p 430 (620)
T 2zuy_A 393 KPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYK 430 (620)
T ss_dssp SSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSS
T ss_pred CCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCC
No 405
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=21.84 E-value=1.4e+02 Score=22.94 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=39.2
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhh
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 105 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~l 105 (1101)
.....|+|++|+..+.+...+.... ..+.+.+ =.=+...++.++|+..+++-+.- ...+.+.+..|..+
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l----~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL----GNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHH----HHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 3567899999999998763333221 1122211 11233579999999999875332 11244445555443
No 406
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.71 E-value=1.4e+02 Score=23.88 Aligned_cols=72 Identities=13% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhcccccccc--CHHHHHHhhhhhc
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTF--NEELFKEITQLLT 107 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~--~~~~~~~L~~ll~ 107 (1101)
.....|+|++|+.++.+...+.... ..+.+ .+=.. +...+++++|+.++++-+.- ... +.+.+..|+.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~-~~a~~---~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLDPEE--SKYWL-MKGKA---LYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHCCCC--HHHHH-HHHHH---HHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHhCcCC--HHHHH-HHHHH---HHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHHH
Confidence 4567899999999998863333221 11111 11122 33579999999999985432 222 4566666666654
Q ss_pred c
Q 001318 108 L 108 (1101)
Q Consensus 108 ~ 108 (1101)
.
T Consensus 88 ~ 88 (112)
T 2kck_A 88 Y 88 (112)
T ss_dssp T
T ss_pred H
Confidence 4
No 407
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.15 E-value=1.2e+02 Score=25.50 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=44.8
Q ss_pred HHhhcCChHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHHHHHhccccccccCHHHHHHhhhhhcc
Q 001318 30 DEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 108 (1101)
Q Consensus 30 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~~L~~~l~~l~~~~~~~~~~L~~ll~~ 108 (1101)
.....|+|++|+..+.....+.... ..++-..=.-++..|++.+|+..+++-+.- ...+..-+..|+.++..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 4577899999999998863433332 112222222334579999999999985432 22356666666666544
No 408
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=20.98 E-value=11 Score=31.27 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=24.6
Q ss_pred hHhcCccccHHHHHHHhhcCChHHHHHHhccc
Q 001318 16 EQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 47 (1101)
Q Consensus 16 ~~esg~~~~~~~~~~~i~~g~w~~~~~~l~~~ 47 (1101)
-+|||+.+++..+-..| +|+||++.+.+...
T Consensus 33 l~~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (100)
T 2epi_A 33 FKKYDLKVETNAMGTVL-EGDLDEILKAFKEA 63 (100)
T ss_dssp HTTSSCEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 34899999877766655 49999999998875
No 409
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Probab=20.60 E-value=1.4e+02 Score=30.65 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHhHhc-Ccccc-----HHHHHHHhhcCC-----hHHHHHHhcccccccCccccceehhhhHHhHHHHHhcCCCHHHHHH
Q 001318 14 QLEQES-GFFFN-----MKYFEDEVHNGN-----WDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVE 82 (1101)
Q Consensus 14 ql~~es-g~~~~-----~~~~~~~i~~g~-----w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lEll~~~~~~~Al~ 82 (1101)
|||.|. |.+.| -.-.-.+++.|. |+..++++.++. .... +. + +..|.-=.+.++...|+.
T Consensus 114 ~Le~~~~g~P~NPmINAGAI~~~sll~~~~~~~r~~~il~~~~~la---g~~~---i~--~-~~V~~SE~~t~~RN~AlA 184 (330)
T 1mki_A 114 RLEINKPGKPFNPMINAGALTIASILPGESAYEKLEFLYSVMETLI---GKRP---RI--H-EEVFRSEWETAHRNRALA 184 (330)
T ss_dssp HHHHSTTCCCSCSSSHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHH---SSCC---CB--C-HHHHHHHHHHCHHHHHHH
T ss_pred hhcccCCCCCCCCccchhHHHHHHhccCCChHHHHHHHHHHHHHHh---CCCC---CC--h-HHHHHHHHhhhHHHHHHH
Confidence 389998 99997 233334555665 666666666552 2211 22 2 556666667889999999
Q ss_pred HHHhccccccccC----HHHHHHhhhhhcc
Q 001318 83 ILVKDLKVFSTFN----EELFKEITQLLTL 108 (1101)
Q Consensus 83 ~L~~~l~~l~~~~----~~~~~~L~~ll~~ 108 (1101)
.|.+...-+.. + -+.|-+.|++.+.
T Consensus 185 y~Lks~g~i~~-dve~~Ld~Yf~qCSi~vt 213 (330)
T 1mki_A 185 YYLKETNFLEA-EVEETLEVYLKQCAMEST 213 (330)
T ss_dssp HHHHHTTCCSS-CHHHHHHHHHHHHTBEEC
T ss_pred HHHHHCCCCCC-CHHHHHHHHHHHhchhcC
Confidence 88887655553 3 4445666666544
No 410
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.02 E-value=7.1e+02 Score=25.41 Aligned_cols=192 Identities=8% Similarity=0.081 Sum_probs=108.8
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCceee---------EecCCCCCeEEEEEecCCCcEEEEEeccCeEEEEEeec------
Q 001318 815 KNDSYVMSAS-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------ 878 (1101)
Q Consensus 815 ~dg~~la~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------ 878 (1101)
++..++++.+ +|.|+-..+...+..+ .++ ....+..+.... ....++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3455677777 8988888765443221 122 233455555554 455677788899888776542
Q ss_pred ---ceEe---eeecCcccCeeEEEEcC---CCCEEEEEeCCCceEEEeCCCccc---ccceeeecCCCCCCCCCCCeEEE
Q 001318 879 ---DEVK---SKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEK---QKNRFLQIPTGRTPTAQSDTRVQ 946 (1101)
Q Consensus 879 ---~~~~---~~l~~h~~~V~~l~~s~---dg~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~ 946 (1101)
|..+ -.+. ....|.++...+ +..+|+..+..|.++...+..-.. .....+....+ ..+..+.
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~ 157 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAE 157 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEE
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEE
Confidence 1111 1122 123455554332 467888899999999887754321 11222222222 2444444
Q ss_pred E-cCCCcEEEEEeCCeEEEEEcCCce-------eeeeccCCCCCCCeeEEEEcCCCCEEEEEEcCCeEEEEEcCCce
Q 001318 947 F-HQDQIHFLVVHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1015 (1101)
Q Consensus 947 ~-s~dg~~la~~~d~~v~vwd~~~~~-------~~~~~~~~~h~~~i~~l~~spdg~~l~s~s~dg~v~vwd~~~~~ 1015 (1101)
. .++...++++.+|.+..+....-. -+..+.... ...|.++..-.++..|++.+..|..+..++..-.
T Consensus 158 ~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~ 233 (312)
T 1suu_A 158 IVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKIS 233 (312)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred EeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhc
Confidence 4 444455555888988888875421 122222222 4567777666666778888999999999886543
Done!